Multiple sequence alignment - TraesCS3B01G369800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G369800 chr3B 100.000 3892 0 0 1 3892 581905961 581909852 0.000000e+00 7188.0
1 TraesCS3B01G369800 chr3B 95.815 693 27 2 3201 3892 812702456 812703147 0.000000e+00 1118.0
2 TraesCS3B01G369800 chr3B 83.178 214 28 6 539 746 800141581 800141792 5.130000e-44 189.0
3 TraesCS3B01G369800 chr3B 97.647 85 0 2 3061 3145 751981570 751981488 1.130000e-30 145.0
4 TraesCS3B01G369800 chr3D 91.304 1219 61 16 811 1998 443722985 443724189 0.000000e+00 1622.0
5 TraesCS3B01G369800 chr3D 95.815 693 27 2 3201 3892 134085178 134084487 0.000000e+00 1118.0
6 TraesCS3B01G369800 chr3D 92.027 602 24 11 2001 2595 443724283 443724867 0.000000e+00 824.0
7 TraesCS3B01G369800 chr3D 93.127 291 16 1 2610 2900 443725240 443725526 1.290000e-114 424.0
8 TraesCS3B01G369800 chr3D 90.805 87 8 0 2962 3048 443727574 443727660 2.460000e-22 117.0
9 TraesCS3B01G369800 chr3D 97.297 37 1 0 2932 2968 443725729 443725765 3.250000e-06 63.9
10 TraesCS3B01G369800 chr3A 89.012 1083 62 24 793 1866 584954737 584955771 0.000000e+00 1288.0
11 TraesCS3B01G369800 chr3A 89.565 920 50 22 2001 2900 584956610 584957503 0.000000e+00 1125.0
12 TraesCS3B01G369800 chr3A 85.870 828 66 13 2 791 584953606 584954420 0.000000e+00 833.0
13 TraesCS3B01G369800 chr3A 96.429 140 2 1 1856 1995 584956126 584956262 1.090000e-55 228.0
14 TraesCS3B01G369800 chr3A 84.106 151 22 2 647 796 646133246 646133395 1.130000e-30 145.0
15 TraesCS3B01G369800 chr3A 96.875 32 1 0 143 174 1212220 1212189 2.000000e-03 54.7
16 TraesCS3B01G369800 chr3A 96.774 31 1 0 147 177 1242668 1242638 7.000000e-03 52.8
17 TraesCS3B01G369800 chr3A 96.774 31 1 0 147 177 1255011 1254981 7.000000e-03 52.8
18 TraesCS3B01G369800 chr1B 96.248 693 24 2 3201 3892 584600079 584600770 0.000000e+00 1134.0
19 TraesCS3B01G369800 chr1B 95.815 693 26 3 3201 3892 520360478 520359788 0.000000e+00 1116.0
20 TraesCS3B01G369800 chr1B 85.000 280 39 3 513 789 512979580 512979859 8.230000e-72 281.0
21 TraesCS3B01G369800 chr5D 96.104 693 26 1 3201 3892 76232745 76233437 0.000000e+00 1129.0
22 TraesCS3B01G369800 chr5D 95.815 693 27 2 3201 3892 398866409 398867100 0.000000e+00 1118.0
23 TraesCS3B01G369800 chr7D 95.960 693 27 1 3201 3892 205948197 205948889 0.000000e+00 1123.0
24 TraesCS3B01G369800 chr7D 96.277 188 7 0 1385 1572 549769248 549769435 3.780000e-80 309.0
25 TraesCS3B01G369800 chr7D 83.766 308 27 9 912 1214 94649668 94649957 1.780000e-68 270.0
26 TraesCS3B01G369800 chr7D 80.970 268 46 5 528 794 8995766 8995503 1.420000e-49 207.0
27 TraesCS3B01G369800 chr7D 96.040 101 4 0 1050 1150 549768784 549768884 8.650000e-37 165.0
28 TraesCS3B01G369800 chr7D 96.552 87 2 1 3061 3146 486627960 486628046 4.050000e-30 143.0
29 TraesCS3B01G369800 chr1D 95.671 693 29 1 3201 3892 41769533 41770225 0.000000e+00 1112.0
30 TraesCS3B01G369800 chr1D 95.671 693 29 1 3201 3892 268477273 268477965 0.000000e+00 1112.0
31 TraesCS3B01G369800 chr1D 98.810 84 0 1 3061 3144 283582823 283582905 8.710000e-32 148.0
32 TraesCS3B01G369800 chr1D 79.739 153 23 6 212 361 464401738 464401591 1.910000e-18 104.0
33 TraesCS3B01G369800 chr6D 81.985 1038 151 25 976 1998 427229751 427230767 0.000000e+00 848.0
34 TraesCS3B01G369800 chr6D 95.213 188 9 0 1385 1572 469343131 469342944 8.180000e-77 298.0
35 TraesCS3B01G369800 chr6D 97.030 101 3 0 1050 1150 469343626 469343526 1.860000e-38 171.0
36 TraesCS3B01G369800 chr6D 100.000 80 0 0 3061 3140 140998124 140998203 8.710000e-32 148.0
37 TraesCS3B01G369800 chr6D 91.781 73 6 0 1194 1266 469343294 469343222 6.880000e-18 102.0
38 TraesCS3B01G369800 chr6A 81.956 726 102 14 976 1692 571928209 571928914 4.330000e-164 588.0
39 TraesCS3B01G369800 chr6B 81.706 727 102 16 976 1692 643164480 643165185 9.380000e-161 577.0
40 TraesCS3B01G369800 chr6B 84.000 200 31 1 593 791 709563114 709563313 1.430000e-44 191.0
41 TraesCS3B01G369800 chr4D 96.809 188 6 0 1385 1572 463693724 463693911 8.120000e-82 315.0
42 TraesCS3B01G369800 chr4D 98.795 83 1 0 3061 3143 507164705 507164787 8.710000e-32 148.0
43 TraesCS3B01G369800 chr4D 81.098 164 29 1 212 375 336131579 336131418 3.160000e-26 130.0
44 TraesCS3B01G369800 chr4D 93.151 73 5 0 1194 1266 463693615 463693687 1.480000e-19 108.0
45 TraesCS3B01G369800 chr4D 87.719 57 7 0 233 289 371135667 371135723 2.510000e-07 67.6
46 TraesCS3B01G369800 chr2B 95.213 188 9 0 1385 1572 767953185 767952998 8.180000e-77 298.0
47 TraesCS3B01G369800 chr2B 84.644 267 38 3 528 791 519693879 519694145 2.980000e-66 263.0
48 TraesCS3B01G369800 chr2B 96.364 110 2 2 1050 1159 767953375 767953268 3.090000e-41 180.0
49 TraesCS3B01G369800 chr2B 81.818 121 18 4 211 330 657302376 657302493 8.900000e-17 99.0
50 TraesCS3B01G369800 chr5B 84.674 261 36 4 539 796 535696250 535695991 1.390000e-64 257.0
51 TraesCS3B01G369800 chr5B 84.577 201 31 0 583 783 422559479 422559279 2.370000e-47 200.0
52 TraesCS3B01G369800 chr5B 92.553 94 4 2 3061 3153 557264909 557264818 8.770000e-27 132.0
53 TraesCS3B01G369800 chr5B 83.562 146 17 5 211 355 520902497 520902358 3.160000e-26 130.0
54 TraesCS3B01G369800 chr2D 84.706 255 36 3 539 791 24221289 24221036 6.460000e-63 252.0
55 TraesCS3B01G369800 chr7B 94.792 96 5 0 3059 3154 713590331 713590236 2.420000e-32 150.0
56 TraesCS3B01G369800 chr2A 97.674 86 2 0 3061 3146 630090986 630090901 8.710000e-32 148.0
57 TraesCS3B01G369800 chr2A 91.000 100 7 2 3061 3160 385904608 385904511 2.440000e-27 134.0
58 TraesCS3B01G369800 chr1A 80.102 196 33 6 513 705 530722698 530722890 1.460000e-29 141.0
59 TraesCS3B01G369800 chr1A 79.856 139 24 4 213 350 585627064 585626929 8.900000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G369800 chr3B 581905961 581909852 3891 False 7188.00 7188 100.0000 1 3892 1 chr3B.!!$F1 3891
1 TraesCS3B01G369800 chr3B 812702456 812703147 691 False 1118.00 1118 95.8150 3201 3892 1 chr3B.!!$F3 691
2 TraesCS3B01G369800 chr3D 134084487 134085178 691 True 1118.00 1118 95.8150 3201 3892 1 chr3D.!!$R1 691
3 TraesCS3B01G369800 chr3D 443722985 443727660 4675 False 610.18 1622 92.9120 811 3048 5 chr3D.!!$F1 2237
4 TraesCS3B01G369800 chr3A 584953606 584957503 3897 False 868.50 1288 90.2190 2 2900 4 chr3A.!!$F2 2898
5 TraesCS3B01G369800 chr1B 584600079 584600770 691 False 1134.00 1134 96.2480 3201 3892 1 chr1B.!!$F2 691
6 TraesCS3B01G369800 chr1B 520359788 520360478 690 True 1116.00 1116 95.8150 3201 3892 1 chr1B.!!$R1 691
7 TraesCS3B01G369800 chr5D 76232745 76233437 692 False 1129.00 1129 96.1040 3201 3892 1 chr5D.!!$F1 691
8 TraesCS3B01G369800 chr5D 398866409 398867100 691 False 1118.00 1118 95.8150 3201 3892 1 chr5D.!!$F2 691
9 TraesCS3B01G369800 chr7D 205948197 205948889 692 False 1123.00 1123 95.9600 3201 3892 1 chr7D.!!$F2 691
10 TraesCS3B01G369800 chr7D 549768784 549769435 651 False 237.00 309 96.1585 1050 1572 2 chr7D.!!$F4 522
11 TraesCS3B01G369800 chr1D 41769533 41770225 692 False 1112.00 1112 95.6710 3201 3892 1 chr1D.!!$F1 691
12 TraesCS3B01G369800 chr1D 268477273 268477965 692 False 1112.00 1112 95.6710 3201 3892 1 chr1D.!!$F2 691
13 TraesCS3B01G369800 chr6D 427229751 427230767 1016 False 848.00 848 81.9850 976 1998 1 chr6D.!!$F2 1022
14 TraesCS3B01G369800 chr6A 571928209 571928914 705 False 588.00 588 81.9560 976 1692 1 chr6A.!!$F1 716
15 TraesCS3B01G369800 chr6B 643164480 643165185 705 False 577.00 577 81.7060 976 1692 1 chr6B.!!$F1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1250 0.179108 GAGCCGACGACCTAGCATTT 60.179 55.0 0.00 0.0 0.0 2.32 F
991 1352 0.250234 CAACCATGGAGAAGAGCGGA 59.750 55.0 21.47 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 2881 0.323633 CAATCAGGCACCATCCACCA 60.324 55.0 0.0 0.0 0.00 4.17 R
2901 4598 0.035056 GCACATGCTCACCCCTAACT 60.035 55.0 0.0 0.0 38.21 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 241 4.348863 AAGTCTCAGTCAGCTGACATTT 57.651 40.909 40.25 23.43 45.94 2.32
260 261 6.535150 ACATTTCGTTATGTCTCAATCGATGT 59.465 34.615 0.00 0.00 33.58 3.06
285 286 9.252962 GTTATATTCCTTTGATTTTGCATGGAG 57.747 33.333 0.00 0.00 0.00 3.86
295 296 7.172868 TGATTTTGCATGGAGATTTGTACAT 57.827 32.000 0.00 0.00 0.00 2.29
296 297 7.613585 TGATTTTGCATGGAGATTTGTACATT 58.386 30.769 0.00 0.00 0.00 2.71
298 299 8.851541 ATTTTGCATGGAGATTTGTACATTTT 57.148 26.923 0.00 0.00 0.00 1.82
367 368 7.784470 ACTTGAGTGAGACTAGGTTAAATCT 57.216 36.000 0.00 0.00 0.00 2.40
380 381 7.921745 ACTAGGTTAAATCTCAGTCGATTTAGC 59.078 37.037 9.97 9.97 43.10 3.09
381 382 6.640518 AGGTTAAATCTCAGTCGATTTAGCA 58.359 36.000 16.39 0.51 43.21 3.49
415 432 2.522185 TCACGAGTTTACCTAGCCACT 58.478 47.619 0.00 0.00 0.00 4.00
433 450 7.170393 AGCCACTCCCTTTTTAAATATTCAC 57.830 36.000 0.00 0.00 0.00 3.18
437 454 7.120726 CCACTCCCTTTTTAAATATTCACGAGT 59.879 37.037 0.00 0.00 0.00 4.18
439 456 8.512138 ACTCCCTTTTTAAATATTCACGAGTTG 58.488 33.333 0.00 0.00 0.00 3.16
454 472 9.787532 ATTCACGAGTTGTAAAAATATTCATGG 57.212 29.630 0.00 0.00 0.00 3.66
563 600 7.645402 ACAGTACCGTGATTTAAAAAGGAAAG 58.355 34.615 0.00 0.00 0.00 2.62
564 601 7.499895 ACAGTACCGTGATTTAAAAAGGAAAGA 59.500 33.333 0.00 0.00 0.00 2.52
566 603 8.565416 AGTACCGTGATTTAAAAAGGAAAGAAG 58.435 33.333 0.00 0.00 0.00 2.85
569 606 7.919091 ACCGTGATTTAAAAAGGAAAGAAGTTC 59.081 33.333 0.00 0.00 35.28 3.01
570 607 7.918562 CCGTGATTTAAAAAGGAAAGAAGTTCA 59.081 33.333 5.50 0.00 38.06 3.18
610 648 3.238232 GTGCAAGATGCTCCTGTCA 57.762 52.632 3.78 0.00 45.31 3.58
614 652 2.290450 TGCAAGATGCTCCTGTCATGAA 60.290 45.455 0.00 0.00 45.31 2.57
623 661 0.320683 CCTGTCATGAACTCCGTGCA 60.321 55.000 0.00 0.00 0.00 4.57
635 673 3.705604 ACTCCGTGCAAAATTTTGTGAG 58.294 40.909 27.13 25.41 40.24 3.51
653 691 2.290896 TGAGGTTTGGCCATTCGAGAAT 60.291 45.455 6.09 0.00 40.61 2.40
654 692 2.094675 AGGTTTGGCCATTCGAGAATG 58.905 47.619 6.09 16.54 45.77 2.67
688 727 2.549754 AGACAAAATCAGGCGTGAACTG 59.450 45.455 13.87 12.60 35.88 3.16
698 737 1.599419 GGCGTGAACTGTGCGATTTTT 60.599 47.619 0.00 0.00 0.00 1.94
707 746 7.630606 GTGAACTGTGCGATTTTTAAAAGTTTG 59.369 33.333 0.14 0.00 0.00 2.93
709 748 7.216920 ACTGTGCGATTTTTAAAAGTTTGTC 57.783 32.000 0.14 0.00 0.00 3.18
717 756 8.690840 CGATTTTTAAAAGTTTGTCAGACATCC 58.309 33.333 3.45 0.00 0.00 3.51
723 762 7.504924 AAAAGTTTGTCAGACATCCGAAATA 57.495 32.000 3.45 0.00 0.00 1.40
727 766 6.655003 AGTTTGTCAGACATCCGAAATATGTT 59.345 34.615 3.45 0.00 37.69 2.71
747 786 0.465460 TTTTGTGCCACGAGCTCCTT 60.465 50.000 8.47 0.00 44.23 3.36
754 793 1.813513 CCACGAGCTCCTTGAATGTT 58.186 50.000 8.47 0.00 0.00 2.71
778 817 2.726633 ACTTCACAAAATTTCGCACGG 58.273 42.857 0.00 0.00 0.00 4.94
786 825 0.511221 AATTTCGCACGGAGTTCACG 59.489 50.000 0.00 0.00 41.61 4.35
791 830 2.928361 CACGGAGTTCACGCACAC 59.072 61.111 0.00 0.00 41.61 3.82
794 833 1.947146 CGGAGTTCACGCACACGAA 60.947 57.895 0.00 0.00 43.93 3.85
804 1158 0.433492 CGCACACGAAGTTAGAACGG 59.567 55.000 0.00 0.00 41.61 4.44
809 1163 0.387750 ACGAAGTTAGAACGGGTCGC 60.388 55.000 12.84 0.00 37.78 5.19
850 1204 5.749596 TGACAAAACATTCGATGTCACTT 57.250 34.783 12.08 0.00 45.14 3.16
896 1250 0.179108 GAGCCGACGACCTAGCATTT 60.179 55.000 0.00 0.00 0.00 2.32
991 1352 0.250234 CAACCATGGAGAAGAGCGGA 59.750 55.000 21.47 0.00 0.00 5.54
1017 1378 4.669809 ATGGCGTTTTGGGGCGGA 62.670 61.111 0.00 0.00 0.00 5.54
1079 1444 3.186047 GCGCCGCGTGTATGACTT 61.186 61.111 15.34 0.00 0.00 3.01
1313 1894 2.778299 AGTTTCATACGAGGCAGCAAA 58.222 42.857 0.00 0.00 0.00 3.68
1326 1907 2.914838 GGCAGCAAAAGTAAACGCATAC 59.085 45.455 0.00 0.00 0.00 2.39
1327 1908 3.365969 GGCAGCAAAAGTAAACGCATACT 60.366 43.478 0.00 0.00 37.73 2.12
1328 1909 3.846335 GCAGCAAAAGTAAACGCATACTC 59.154 43.478 1.64 0.00 35.09 2.59
1329 1910 4.403453 CAGCAAAAGTAAACGCATACTCC 58.597 43.478 1.64 0.00 35.09 3.85
1415 2000 4.994201 GGCGACGTCGTGCTCACA 62.994 66.667 35.48 0.00 42.22 3.58
1448 2033 2.094545 CCACGCCATCGAGATCATGATA 60.095 50.000 8.54 0.00 39.41 2.15
1557 2142 1.002087 AGTTCCGGCACTTCGATCTTT 59.998 47.619 0.00 0.00 0.00 2.52
1695 2280 1.350019 ACCACTTGGCCAAGGTAGTAC 59.650 52.381 41.04 0.00 42.53 2.73
1697 2282 1.001633 CACTTGGCCAAGGTAGTACGT 59.998 52.381 41.04 21.37 42.53 3.57
1714 2299 6.364945 AGTACGTATCTACCTTAAACGGTC 57.635 41.667 0.00 0.00 38.49 4.79
1715 2300 5.880332 AGTACGTATCTACCTTAAACGGTCA 59.120 40.000 0.00 0.00 38.49 4.02
1840 2440 2.625823 CGGCCATTGCGTCTTTGGT 61.626 57.895 2.24 0.00 38.85 3.67
1916 2881 2.586792 GAGGCATCTCCAAGCGGT 59.413 61.111 0.00 0.00 37.29 5.68
1932 2897 2.756400 GTGGTGGATGGTGCCTGA 59.244 61.111 0.00 0.00 0.00 3.86
1998 2963 3.087031 TCAGGGACAAGAAGGTACGTAG 58.913 50.000 0.00 0.00 0.00 3.51
1999 2964 1.823610 AGGGACAAGAAGGTACGTAGC 59.176 52.381 16.85 16.85 0.00 3.58
2000 2965 1.547372 GGGACAAGAAGGTACGTAGCA 59.453 52.381 25.28 0.00 0.00 3.49
2003 2968 1.881973 ACAAGAAGGTACGTAGCACGA 59.118 47.619 25.28 0.00 46.05 4.35
2004 2969 2.248487 CAAGAAGGTACGTAGCACGAC 58.752 52.381 25.28 13.23 46.05 4.34
2008 3324 1.138247 GGTACGTAGCACGACCCAG 59.862 63.158 19.43 0.00 46.05 4.45
2026 3342 2.322161 CAGCTTTCAAGTGGCGAATTG 58.678 47.619 2.20 2.20 0.00 2.32
2044 3360 2.131776 TGAATCTGGTCATGCATGCA 57.868 45.000 25.04 25.04 0.00 3.96
2045 3361 2.661718 TGAATCTGGTCATGCATGCAT 58.338 42.857 27.46 27.46 37.08 3.96
2059 3375 4.401202 ATGCATGCATGACATCTGAAAGAA 59.599 37.500 31.74 0.00 40.30 2.52
2191 3521 3.166489 AGTATCAGCGCTGGTAGTTTC 57.834 47.619 35.36 20.89 0.00 2.78
2210 3540 2.048222 CTCTCAGCGCCGTGGAAA 60.048 61.111 2.29 0.00 0.00 3.13
2211 3541 1.448540 CTCTCAGCGCCGTGGAAAT 60.449 57.895 2.29 0.00 0.00 2.17
2212 3542 0.179111 CTCTCAGCGCCGTGGAAATA 60.179 55.000 2.29 0.00 0.00 1.40
2213 3543 0.464036 TCTCAGCGCCGTGGAAATAT 59.536 50.000 2.29 0.00 0.00 1.28
2253 3583 2.516227 TACCCCAAATCATCGCCAAA 57.484 45.000 0.00 0.00 0.00 3.28
2265 3595 0.886938 TCGCCAAAACGGATGAAGCA 60.887 50.000 0.00 0.00 36.56 3.91
2399 3729 0.037303 ATGGTGAAGCTGGACCTGTG 59.963 55.000 14.05 0.00 32.98 3.66
2475 3805 0.039618 AATCCGTGGTCATTTGCCCT 59.960 50.000 0.00 0.00 0.00 5.19
2515 3845 5.823209 TCATGCATTGGACTTATCAACTG 57.177 39.130 0.00 0.00 0.00 3.16
2517 3847 6.413892 TCATGCATTGGACTTATCAACTGTA 58.586 36.000 0.00 0.00 0.00 2.74
2519 3849 5.555966 TGCATTGGACTTATCAACTGTACA 58.444 37.500 0.00 0.00 0.00 2.90
2520 3850 5.643348 TGCATTGGACTTATCAACTGTACAG 59.357 40.000 21.44 21.44 0.00 2.74
2522 3852 6.816640 GCATTGGACTTATCAACTGTACAGTA 59.183 38.462 28.13 14.72 41.58 2.74
2523 3853 7.495934 GCATTGGACTTATCAACTGTACAGTAT 59.504 37.037 28.13 20.40 41.58 2.12
2524 3854 9.383519 CATTGGACTTATCAACTGTACAGTATT 57.616 33.333 28.13 17.43 41.58 1.89
2526 3856 9.865321 TTGGACTTATCAACTGTACAGTATTAC 57.135 33.333 28.13 8.46 41.58 1.89
2527 3857 9.027202 TGGACTTATCAACTGTACAGTATTACA 57.973 33.333 28.13 10.93 41.58 2.41
2536 3866 7.307493 ACTGTACAGTATTACATGCATTGTG 57.693 36.000 26.91 0.00 40.43 3.33
2539 3869 5.239359 ACAGTATTACATGCATTGTGCTG 57.761 39.130 0.00 5.30 45.31 4.41
2540 3870 4.039703 CAGTATTACATGCATTGTGCTGC 58.960 43.478 0.00 0.00 45.31 5.25
2589 3920 7.678194 AACTTGTTTTGACATCGTTTACATG 57.322 32.000 0.00 0.00 0.00 3.21
2595 3926 2.297701 GACATCGTTTACATGGCCCAT 58.702 47.619 0.00 0.00 0.00 4.00
2598 3929 1.745232 TCGTTTACATGGCCCATGAC 58.255 50.000 29.99 16.31 43.81 3.06
2599 3930 1.280710 TCGTTTACATGGCCCATGACT 59.719 47.619 29.99 11.34 43.81 3.41
2602 3933 3.250762 CGTTTACATGGCCCATGACTATG 59.749 47.826 29.99 14.38 43.81 2.23
2603 3934 4.207165 GTTTACATGGCCCATGACTATGT 58.793 43.478 29.99 10.69 43.81 2.29
2605 3936 2.658285 ACATGGCCCATGACTATGTTG 58.342 47.619 29.99 1.83 43.81 3.33
2607 3938 3.201930 ACATGGCCCATGACTATGTTGTA 59.798 43.478 29.99 0.00 43.81 2.41
2608 3939 4.206375 CATGGCCCATGACTATGTTGTAA 58.794 43.478 19.32 0.00 43.81 2.41
2654 4343 5.181748 CAAACCTCTTCCTTCCATAGTCTG 58.818 45.833 0.00 0.00 0.00 3.51
2703 4400 2.311542 TGGGGTATCTGCTGGTTCAATT 59.688 45.455 0.00 0.00 0.00 2.32
2704 4401 3.525609 TGGGGTATCTGCTGGTTCAATTA 59.474 43.478 0.00 0.00 0.00 1.40
2705 4402 3.883489 GGGGTATCTGCTGGTTCAATTAC 59.117 47.826 0.00 0.00 0.00 1.89
2706 4403 3.560068 GGGTATCTGCTGGTTCAATTACG 59.440 47.826 0.00 0.00 0.00 3.18
2774 4471 0.247736 GCACTACAGGGAGTGGACTG 59.752 60.000 13.29 0.00 45.85 3.51
2807 4504 0.654160 GGCTCCGTATTACGTTTGCC 59.346 55.000 20.29 20.29 40.58 4.52
2861 4558 2.550180 GAGGGTCAAGTCTTTCTGCAAC 59.450 50.000 0.00 0.00 0.00 4.17
2900 4597 7.547370 GCTAAGGAGGTGAAGTAATATATGCAG 59.453 40.741 0.00 0.00 0.00 4.41
2901 4598 7.618019 AAGGAGGTGAAGTAATATATGCAGA 57.382 36.000 0.00 0.00 0.00 4.26
2902 4599 7.238486 AGGAGGTGAAGTAATATATGCAGAG 57.762 40.000 0.00 0.00 0.00 3.35
2903 4600 6.784969 AGGAGGTGAAGTAATATATGCAGAGT 59.215 38.462 0.00 0.00 0.00 3.24
2905 4602 8.585881 GGAGGTGAAGTAATATATGCAGAGTTA 58.414 37.037 0.00 0.00 0.00 2.24
2906 4603 9.632807 GAGGTGAAGTAATATATGCAGAGTTAG 57.367 37.037 0.00 0.00 0.00 2.34
2926 4644 0.675633 GGGTGAGCATGTGCAACTTT 59.324 50.000 7.83 0.00 45.16 2.66
2927 4645 1.603678 GGGTGAGCATGTGCAACTTTG 60.604 52.381 7.83 0.00 45.16 2.77
2928 4646 1.067516 GGTGAGCATGTGCAACTTTGT 59.932 47.619 7.83 0.00 45.16 2.83
2929 4647 2.481795 GGTGAGCATGTGCAACTTTGTT 60.482 45.455 7.83 0.00 45.16 2.83
2930 4648 2.536803 GTGAGCATGTGCAACTTTGTTG 59.463 45.455 7.83 6.12 45.16 3.33
2931 4649 1.523934 GAGCATGTGCAACTTTGTTGC 59.476 47.619 23.43 23.43 45.16 4.17
2968 4836 5.462068 TCAAACTCGGATGAATGTAATAGCG 59.538 40.000 0.00 0.00 0.00 4.26
2974 6657 3.493129 GGATGAATGTAATAGCGAACGCA 59.507 43.478 20.66 7.73 44.88 5.24
2978 6661 4.390603 TGAATGTAATAGCGAACGCAAAGT 59.609 37.500 20.66 10.21 44.88 2.66
2982 6665 5.162794 TGTAATAGCGAACGCAAAGTCTAA 58.837 37.500 20.66 0.00 44.88 2.10
2993 6676 3.003480 GCAAAGTCTAACCTGCCACTAG 58.997 50.000 0.00 0.00 0.00 2.57
3039 6722 6.089820 GTGCCACATTTTAATTGTCACTGATG 59.910 38.462 0.00 0.00 0.00 3.07
3048 6731 5.649782 AATTGTCACTGATGAAATGTCCC 57.350 39.130 0.00 0.00 36.31 4.46
3049 6732 3.071874 TGTCACTGATGAAATGTCCCC 57.928 47.619 0.00 0.00 36.31 4.81
3050 6733 2.290896 TGTCACTGATGAAATGTCCCCC 60.291 50.000 0.00 0.00 36.31 5.40
3051 6734 1.991813 TCACTGATGAAATGTCCCCCA 59.008 47.619 0.00 0.00 0.00 4.96
3052 6735 2.094675 CACTGATGAAATGTCCCCCAC 58.905 52.381 0.00 0.00 0.00 4.61
3053 6736 1.995542 ACTGATGAAATGTCCCCCACT 59.004 47.619 0.00 0.00 0.00 4.00
3054 6737 3.054434 CACTGATGAAATGTCCCCCACTA 60.054 47.826 0.00 0.00 0.00 2.74
3055 6738 3.591527 ACTGATGAAATGTCCCCCACTAA 59.408 43.478 0.00 0.00 0.00 2.24
3056 6739 4.230502 ACTGATGAAATGTCCCCCACTAAT 59.769 41.667 0.00 0.00 0.00 1.73
3057 6740 5.431731 ACTGATGAAATGTCCCCCACTAATA 59.568 40.000 0.00 0.00 0.00 0.98
3058 6741 6.103205 ACTGATGAAATGTCCCCCACTAATAT 59.897 38.462 0.00 0.00 0.00 1.28
3059 6742 6.921412 TGATGAAATGTCCCCCACTAATATT 58.079 36.000 0.00 0.00 0.00 1.28
3060 6743 7.361438 TGATGAAATGTCCCCCACTAATATTT 58.639 34.615 0.00 0.00 0.00 1.40
3061 6744 7.505585 TGATGAAATGTCCCCCACTAATATTTC 59.494 37.037 0.00 0.00 35.02 2.17
3062 6745 6.133356 TGAAATGTCCCCCACTAATATTTCC 58.867 40.000 0.00 0.00 34.08 3.13
3063 6746 3.849563 TGTCCCCCACTAATATTTCCG 57.150 47.619 0.00 0.00 0.00 4.30
3064 6747 3.116959 TGTCCCCCACTAATATTTCCGT 58.883 45.455 0.00 0.00 0.00 4.69
3065 6748 3.524380 TGTCCCCCACTAATATTTCCGTT 59.476 43.478 0.00 0.00 0.00 4.44
3066 6749 4.132336 GTCCCCCACTAATATTTCCGTTC 58.868 47.826 0.00 0.00 0.00 3.95
3067 6750 3.136992 TCCCCCACTAATATTTCCGTTCC 59.863 47.826 0.00 0.00 0.00 3.62
3068 6751 3.117813 CCCCCACTAATATTTCCGTTCCA 60.118 47.826 0.00 0.00 0.00 3.53
3069 6752 4.528920 CCCCACTAATATTTCCGTTCCAA 58.471 43.478 0.00 0.00 0.00 3.53
3070 6753 4.951094 CCCCACTAATATTTCCGTTCCAAA 59.049 41.667 0.00 0.00 0.00 3.28
3071 6754 5.596772 CCCCACTAATATTTCCGTTCCAAAT 59.403 40.000 0.00 0.00 0.00 2.32
3072 6755 6.097696 CCCCACTAATATTTCCGTTCCAAATT 59.902 38.462 0.00 0.00 0.00 1.82
3073 6756 7.285858 CCCCACTAATATTTCCGTTCCAAATTA 59.714 37.037 0.00 0.00 0.00 1.40
3074 6757 8.132995 CCCACTAATATTTCCGTTCCAAATTAC 58.867 37.037 0.00 0.00 0.00 1.89
3075 6758 8.899771 CCACTAATATTTCCGTTCCAAATTACT 58.100 33.333 0.00 0.00 0.00 2.24
3076 6759 9.931210 CACTAATATTTCCGTTCCAAATTACTC 57.069 33.333 0.00 0.00 0.00 2.59
3077 6760 8.823818 ACTAATATTTCCGTTCCAAATTACTCG 58.176 33.333 0.00 0.00 0.00 4.18
3078 6761 7.619964 AATATTTCCGTTCCAAATTACTCGT 57.380 32.000 0.00 0.00 0.00 4.18
3079 6762 4.996062 TTTCCGTTCCAAATTACTCGTC 57.004 40.909 0.00 0.00 0.00 4.20
3080 6763 2.598589 TCCGTTCCAAATTACTCGTCG 58.401 47.619 0.00 0.00 0.00 5.12
3081 6764 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
3082 6765 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
3083 6766 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
3084 6767 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
3085 6768 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
3086 6769 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
3087 6770 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
3088 6771 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
3089 6772 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
3090 6773 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
3091 6774 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
3092 6775 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
3093 6776 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3094 6777 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3095 6778 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3096 6779 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3097 6780 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3098 6781 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3099 6782 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3100 6783 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3101 6784 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3114 6797 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3115 6798 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3116 6799 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3117 6800 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3118 6801 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3119 6802 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3120 6803 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3121 6804 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
3122 6805 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
3123 6806 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
3124 6807 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
3125 6808 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
3126 6809 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
3127 6810 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
3128 6811 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
3129 6812 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
3130 6813 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
3131 6814 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
3132 6815 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3133 6816 3.671433 CGACGAGTAATTTGGAACGGAGA 60.671 47.826 0.00 0.00 0.00 3.71
3134 6817 3.846360 ACGAGTAATTTGGAACGGAGAG 58.154 45.455 0.00 0.00 0.00 3.20
3135 6818 3.508793 ACGAGTAATTTGGAACGGAGAGA 59.491 43.478 0.00 0.00 0.00 3.10
3136 6819 4.106197 CGAGTAATTTGGAACGGAGAGAG 58.894 47.826 0.00 0.00 0.00 3.20
3137 6820 4.380655 CGAGTAATTTGGAACGGAGAGAGT 60.381 45.833 0.00 0.00 0.00 3.24
3138 6821 5.163683 CGAGTAATTTGGAACGGAGAGAGTA 60.164 44.000 0.00 0.00 0.00 2.59
3139 6822 5.963594 AGTAATTTGGAACGGAGAGAGTAC 58.036 41.667 0.00 0.00 0.00 2.73
3140 6823 4.884668 AATTTGGAACGGAGAGAGTACA 57.115 40.909 0.00 0.00 0.00 2.90
3141 6824 5.422214 AATTTGGAACGGAGAGAGTACAT 57.578 39.130 0.00 0.00 0.00 2.29
3142 6825 6.540438 AATTTGGAACGGAGAGAGTACATA 57.460 37.500 0.00 0.00 0.00 2.29
3143 6826 5.578005 TTTGGAACGGAGAGAGTACATAG 57.422 43.478 0.00 0.00 0.00 2.23
3144 6827 2.950309 TGGAACGGAGAGAGTACATAGC 59.050 50.000 0.00 0.00 0.00 2.97
3145 6828 2.950309 GGAACGGAGAGAGTACATAGCA 59.050 50.000 0.00 0.00 0.00 3.49
3146 6829 3.003897 GGAACGGAGAGAGTACATAGCAG 59.996 52.174 0.00 0.00 0.00 4.24
3147 6830 3.284793 ACGGAGAGAGTACATAGCAGT 57.715 47.619 0.00 0.00 0.00 4.40
3148 6831 2.946329 ACGGAGAGAGTACATAGCAGTG 59.054 50.000 0.00 0.00 0.00 3.66
3149 6832 2.292016 CGGAGAGAGTACATAGCAGTGG 59.708 54.545 0.00 0.00 0.00 4.00
3150 6833 3.556999 GGAGAGAGTACATAGCAGTGGA 58.443 50.000 0.00 0.00 0.00 4.02
3151 6834 3.568007 GGAGAGAGTACATAGCAGTGGAG 59.432 52.174 0.00 0.00 0.00 3.86
3152 6835 3.561143 AGAGAGTACATAGCAGTGGAGG 58.439 50.000 0.00 0.00 0.00 4.30
3153 6836 3.203263 AGAGAGTACATAGCAGTGGAGGA 59.797 47.826 0.00 0.00 0.00 3.71
3154 6837 3.954904 GAGAGTACATAGCAGTGGAGGAA 59.045 47.826 0.00 0.00 0.00 3.36
3155 6838 4.353777 AGAGTACATAGCAGTGGAGGAAA 58.646 43.478 0.00 0.00 0.00 3.13
3156 6839 4.777896 AGAGTACATAGCAGTGGAGGAAAA 59.222 41.667 0.00 0.00 0.00 2.29
3157 6840 5.426833 AGAGTACATAGCAGTGGAGGAAAAT 59.573 40.000 0.00 0.00 0.00 1.82
3158 6841 6.067217 AGTACATAGCAGTGGAGGAAAATT 57.933 37.500 0.00 0.00 0.00 1.82
3159 6842 7.125811 AGAGTACATAGCAGTGGAGGAAAATTA 59.874 37.037 0.00 0.00 0.00 1.40
3160 6843 7.048512 AGTACATAGCAGTGGAGGAAAATTAC 58.951 38.462 0.00 0.00 0.00 1.89
3161 6844 5.815581 ACATAGCAGTGGAGGAAAATTACA 58.184 37.500 0.00 0.00 0.00 2.41
3162 6845 5.882557 ACATAGCAGTGGAGGAAAATTACAG 59.117 40.000 0.00 0.00 0.00 2.74
3163 6846 4.373156 AGCAGTGGAGGAAAATTACAGT 57.627 40.909 0.00 0.00 0.00 3.55
3164 6847 4.074970 AGCAGTGGAGGAAAATTACAGTG 58.925 43.478 0.00 0.00 36.00 3.66
3165 6848 3.191371 GCAGTGGAGGAAAATTACAGTGG 59.809 47.826 0.00 0.00 34.08 4.00
3166 6849 3.191371 CAGTGGAGGAAAATTACAGTGGC 59.809 47.826 0.00 0.00 0.00 5.01
3167 6850 2.492088 GTGGAGGAAAATTACAGTGGCC 59.508 50.000 0.00 0.00 0.00 5.36
3168 6851 1.743394 GGAGGAAAATTACAGTGGCCG 59.257 52.381 0.00 0.00 0.00 6.13
3169 6852 2.433436 GAGGAAAATTACAGTGGCCGT 58.567 47.619 0.00 0.00 0.00 5.68
3170 6853 2.817844 GAGGAAAATTACAGTGGCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
3171 6854 2.556622 AGGAAAATTACAGTGGCCGTTG 59.443 45.455 0.00 0.67 0.00 4.10
3172 6855 2.324860 GAAAATTACAGTGGCCGTTGC 58.675 47.619 0.00 0.00 0.00 4.17
3173 6856 1.323412 AAATTACAGTGGCCGTTGCA 58.677 45.000 0.00 0.00 40.13 4.08
3174 6857 0.596082 AATTACAGTGGCCGTTGCAC 59.404 50.000 0.00 0.00 40.13 4.57
3175 6858 1.241315 ATTACAGTGGCCGTTGCACC 61.241 55.000 0.00 0.00 40.13 5.01
3176 6859 2.610532 TTACAGTGGCCGTTGCACCA 62.611 55.000 0.00 0.00 40.13 4.17
3185 6868 4.947147 GTTGCACCACTCGGCCCA 62.947 66.667 0.00 0.00 34.57 5.36
3186 6869 3.965258 TTGCACCACTCGGCCCAT 61.965 61.111 0.00 0.00 34.57 4.00
3187 6870 3.918253 TTGCACCACTCGGCCCATC 62.918 63.158 0.00 0.00 34.57 3.51
3188 6871 4.408821 GCACCACTCGGCCCATCA 62.409 66.667 0.00 0.00 34.57 3.07
3189 6872 2.436646 CACCACTCGGCCCATCAC 60.437 66.667 0.00 0.00 34.57 3.06
3190 6873 2.607750 ACCACTCGGCCCATCACT 60.608 61.111 0.00 0.00 34.57 3.41
3191 6874 2.124983 CCACTCGGCCCATCACTG 60.125 66.667 0.00 0.00 0.00 3.66
3192 6875 2.124983 CACTCGGCCCATCACTGG 60.125 66.667 0.00 0.00 42.73 4.00
3193 6876 2.607750 ACTCGGCCCATCACTGGT 60.608 61.111 0.00 0.00 41.37 4.00
3194 6877 1.305802 ACTCGGCCCATCACTGGTA 60.306 57.895 0.00 0.00 41.37 3.25
3195 6878 1.144057 CTCGGCCCATCACTGGTAC 59.856 63.158 0.00 0.00 41.37 3.34
3196 6879 1.305802 TCGGCCCATCACTGGTACT 60.306 57.895 0.00 0.00 41.37 2.73
3197 6880 0.907704 TCGGCCCATCACTGGTACTT 60.908 55.000 0.00 0.00 41.37 2.24
3198 6881 0.744414 CGGCCCATCACTGGTACTTG 60.744 60.000 0.00 0.00 41.37 3.16
3199 6882 0.618458 GGCCCATCACTGGTACTTGA 59.382 55.000 0.00 0.00 41.37 3.02
3239 6922 1.002868 GTCATCTGGCACCAGCTGT 60.003 57.895 17.58 0.00 43.31 4.40
3338 7021 3.132824 TGAAGGCATCGTCATGTGACTAT 59.867 43.478 11.03 3.28 42.66 2.12
3430 7113 1.595794 GCGGTGTCGTTTCTCTTTTGA 59.404 47.619 0.00 0.00 38.89 2.69
3576 7260 3.770040 TCGGCAGGTGCTACGCAT 61.770 61.111 1.26 0.00 41.91 4.73
3609 7294 1.598130 GGCTTCAAGCTGTGTCGGT 60.598 57.895 9.83 0.00 41.99 4.69
3676 7361 0.376852 GACGTGTTCAGCTGTTTGCA 59.623 50.000 14.67 5.93 45.94 4.08
3725 7410 0.101759 GGTGGCGTTGACGATAGCTA 59.898 55.000 7.85 0.00 43.02 3.32
3762 7447 5.550290 TGATGCATCAGTACAGTTCTGAAA 58.450 37.500 25.42 4.04 43.65 2.69
3831 7516 2.118732 TGTGTGCCCTAGACCCGA 59.881 61.111 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 241 9.908152 AATATAACATCGATTGAGACATAACGA 57.092 29.630 0.00 0.00 0.00 3.85
253 254 9.683069 GCAAAATCAAAGGAATATAACATCGAT 57.317 29.630 0.00 0.00 0.00 3.59
255 256 8.854979 TGCAAAATCAAAGGAATATAACATCG 57.145 30.769 0.00 0.00 0.00 3.84
260 261 9.199645 TCTCCATGCAAAATCAAAGGAATATAA 57.800 29.630 0.00 0.00 0.00 0.98
347 348 7.399245 ACTGAGATTTAACCTAGTCTCACTC 57.601 40.000 4.77 0.00 41.40 3.51
349 350 6.093771 TCGACTGAGATTTAACCTAGTCTCAC 59.906 42.308 4.77 0.00 41.40 3.51
357 358 6.640518 TGCTAAATCGACTGAGATTTAACCT 58.359 36.000 16.89 0.00 46.28 3.50
367 368 6.552859 TTTTTCACATGCTAAATCGACTGA 57.447 33.333 0.00 0.00 0.00 3.41
399 416 2.468915 AGGGAGTGGCTAGGTAAACTC 58.531 52.381 0.00 0.00 38.65 3.01
415 432 8.398878 ACAACTCGTGAATATTTAAAAAGGGA 57.601 30.769 0.00 0.00 0.00 4.20
495 513 9.445786 TGAATTATCGAGTGTTTTGTTCTTTTC 57.554 29.630 0.00 0.00 0.00 2.29
500 521 6.581166 GGGTTGAATTATCGAGTGTTTTGTTC 59.419 38.462 0.00 0.00 0.00 3.18
536 557 5.702209 TCCTTTTTAAATCACGGTACTGTCC 59.298 40.000 3.76 0.00 0.00 4.02
537 558 6.790285 TCCTTTTTAAATCACGGTACTGTC 57.210 37.500 3.76 0.00 0.00 3.51
538 559 7.499895 TCTTTCCTTTTTAAATCACGGTACTGT 59.500 33.333 0.04 0.04 0.00 3.55
539 560 7.867752 TCTTTCCTTTTTAAATCACGGTACTG 58.132 34.615 0.00 0.00 0.00 2.74
610 648 4.507388 CACAAAATTTTGCACGGAGTTCAT 59.493 37.500 26.94 3.96 38.88 2.57
614 652 3.490761 CCTCACAAAATTTTGCACGGAGT 60.491 43.478 26.94 6.49 41.79 3.85
623 661 4.227864 TGGCCAAACCTCACAAAATTTT 57.772 36.364 0.61 0.00 40.22 1.82
635 673 2.566952 CATTCTCGAATGGCCAAACC 57.433 50.000 10.96 0.05 43.25 3.27
670 708 2.653890 CACAGTTCACGCCTGATTTTG 58.346 47.619 0.00 0.00 34.04 2.44
679 718 1.753956 AAAAATCGCACAGTTCACGC 58.246 45.000 0.00 0.00 0.00 5.34
688 727 7.008810 TGTCTGACAAACTTTTAAAAATCGCAC 59.991 33.333 8.27 0.00 0.00 5.34
698 737 6.928979 TTTCGGATGTCTGACAAACTTTTA 57.071 33.333 15.31 0.00 0.00 1.52
727 766 0.465460 AGGAGCTCGTGGCACAAAAA 60.465 50.000 19.09 0.00 44.16 1.94
732 771 0.674895 ATTCAAGGAGCTCGTGGCAC 60.675 55.000 10.16 7.79 44.79 5.01
747 786 8.379161 CGAAATTTTGTGAAGTTTGAACATTCA 58.621 29.630 0.00 0.00 34.92 2.57
754 793 4.264145 CGTGCGAAATTTTGTGAAGTTTGA 59.736 37.500 7.27 0.00 0.00 2.69
778 817 0.928229 AACTTCGTGTGCGTGAACTC 59.072 50.000 0.00 0.00 39.49 3.01
781 820 2.495409 TCTAACTTCGTGTGCGTGAA 57.505 45.000 0.00 0.00 39.49 3.18
786 825 0.788391 CCCGTTCTAACTTCGTGTGC 59.212 55.000 0.00 0.00 0.00 4.57
791 830 1.400990 CGCGACCCGTTCTAACTTCG 61.401 60.000 0.00 0.00 0.00 3.79
804 1158 4.849329 CGTAGGAGGCACGCGACC 62.849 72.222 15.93 14.66 31.94 4.79
809 1163 0.524862 AACTACACGTAGGAGGCACG 59.475 55.000 8.97 0.00 44.80 5.34
850 1204 2.034532 TCACGGCGGGACTGTCTA 59.965 61.111 8.28 0.00 34.87 2.59
896 1250 1.336148 CGTGTGCGTGTTTACCTAGGA 60.336 52.381 17.98 0.00 0.00 2.94
966 1327 0.107017 CTTCTCCATGGTTGCCCGAT 60.107 55.000 12.58 0.00 0.00 4.18
991 1352 1.303317 AAAACGCCATTCCGCCTCT 60.303 52.632 0.00 0.00 0.00 3.69
1006 1367 3.552219 GGGTTTTCCGCCCCAAAA 58.448 55.556 0.00 0.00 40.88 2.44
1079 1444 3.371063 GGTCGCTCGTGTCCAGGA 61.371 66.667 0.00 0.00 0.00 3.86
1326 1907 5.347342 GCTGCAGCAGTACATATATAGGAG 58.653 45.833 33.36 0.00 41.59 3.69
1327 1908 4.142381 CGCTGCAGCAGTACATATATAGGA 60.142 45.833 36.03 0.00 42.21 2.94
1328 1909 4.108336 CGCTGCAGCAGTACATATATAGG 58.892 47.826 36.03 12.42 42.21 2.57
1329 1910 3.549471 GCGCTGCAGCAGTACATATATAG 59.451 47.826 36.03 17.00 42.21 1.31
1557 2142 3.646715 CCACCCCTTCTCCGGCAA 61.647 66.667 0.00 0.00 0.00 4.52
1695 2280 4.142403 TGGTGACCGTTTAAGGTAGATACG 60.142 45.833 0.00 0.00 46.09 3.06
1697 2282 5.018809 AGTGGTGACCGTTTAAGGTAGATA 58.981 41.667 0.00 0.00 46.09 1.98
1711 2296 2.676463 GCATCTCTCTGAAGTGGTGACC 60.676 54.545 0.00 0.00 30.24 4.02
1714 2299 2.344950 GTGCATCTCTCTGAAGTGGTG 58.655 52.381 0.00 0.00 31.62 4.17
1715 2300 1.067283 CGTGCATCTCTCTGAAGTGGT 60.067 52.381 0.00 0.00 0.00 4.16
1747 2332 9.556030 GCAATCTGTTTGATCATCACATATATG 57.444 33.333 11.29 11.29 37.53 1.78
1754 2339 5.353400 TCTCTGCAATCTGTTTGATCATCAC 59.647 40.000 0.00 0.00 37.53 3.06
1793 2393 3.108881 CGTCACTGATTACCATGACTCG 58.891 50.000 0.00 0.00 39.45 4.18
1819 2419 0.732571 CAAAGACGCAATGGCCGTAT 59.267 50.000 0.00 0.00 36.38 3.06
1840 2440 2.740826 GGCACGAACGGCTTGCTA 60.741 61.111 8.47 0.00 41.19 3.49
1914 2879 2.215451 ATCAGGCACCATCCACCACC 62.215 60.000 0.00 0.00 0.00 4.61
1915 2880 0.323725 AATCAGGCACCATCCACCAC 60.324 55.000 0.00 0.00 0.00 4.16
1916 2881 0.323633 CAATCAGGCACCATCCACCA 60.324 55.000 0.00 0.00 0.00 4.17
1932 2897 0.749454 GATCCAGCCAAGTCGCCAAT 60.749 55.000 0.00 0.00 0.00 3.16
1998 2963 1.166531 ACTTGAAAGCTGGGTCGTGC 61.167 55.000 0.00 0.00 0.00 5.34
1999 2964 0.588252 CACTTGAAAGCTGGGTCGTG 59.412 55.000 0.00 0.00 0.00 4.35
2000 2965 0.535102 CCACTTGAAAGCTGGGTCGT 60.535 55.000 0.00 0.00 0.00 4.34
2003 2968 1.898574 CGCCACTTGAAAGCTGGGT 60.899 57.895 11.26 0.00 31.84 4.51
2004 2969 1.172180 TTCGCCACTTGAAAGCTGGG 61.172 55.000 11.26 3.79 31.84 4.45
2008 3324 2.704725 TCAATTCGCCACTTGAAAGC 57.295 45.000 0.00 0.00 0.00 3.51
2044 3360 9.918630 CAAATTAGGTTTTCTTTCAGATGTCAT 57.081 29.630 0.00 0.00 0.00 3.06
2045 3361 8.912988 ACAAATTAGGTTTTCTTTCAGATGTCA 58.087 29.630 0.00 0.00 0.00 3.58
2046 3362 9.750125 AACAAATTAGGTTTTCTTTCAGATGTC 57.250 29.630 0.00 0.00 0.00 3.06
2047 3363 9.750125 GAACAAATTAGGTTTTCTTTCAGATGT 57.250 29.630 0.00 0.00 0.00 3.06
2059 3375 6.206048 CCTGTTACCGAGAACAAATTAGGTTT 59.794 38.462 4.07 0.00 38.80 3.27
2070 3386 5.476614 ACTGAATAACCTGTTACCGAGAAC 58.523 41.667 0.00 0.00 0.00 3.01
2074 3390 3.758023 TCGACTGAATAACCTGTTACCGA 59.242 43.478 0.00 0.00 0.00 4.69
2104 3424 2.426024 GTCTACCGAGATGCCACAGTAA 59.574 50.000 0.00 0.00 33.14 2.24
2191 3521 2.492449 TTTCCACGGCGCTGAGAGAG 62.492 60.000 25.98 6.31 0.00 3.20
2210 3540 9.203163 GTATAGCTCCCTGGTCAAGTTATATAT 57.797 37.037 0.00 0.00 0.00 0.86
2211 3541 7.618512 GGTATAGCTCCCTGGTCAAGTTATATA 59.381 40.741 0.00 0.00 0.00 0.86
2212 3542 6.440965 GGTATAGCTCCCTGGTCAAGTTATAT 59.559 42.308 0.00 0.00 0.00 0.86
2213 3543 5.778750 GGTATAGCTCCCTGGTCAAGTTATA 59.221 44.000 0.00 0.00 0.00 0.98
2265 3595 2.672961 TCATGGCGTTCTCGAAGAAT 57.327 45.000 0.00 0.00 36.50 2.40
2399 3729 0.864455 GTCGATGCCATCTAAGCAGC 59.136 55.000 2.75 0.00 44.90 5.25
2536 3866 4.399303 ACAATACCAAAACCAGATAGCAGC 59.601 41.667 0.00 0.00 0.00 5.25
2539 3869 7.625828 AGTTACAATACCAAAACCAGATAGC 57.374 36.000 0.00 0.00 0.00 2.97
2589 3920 6.714810 TGATTATTACAACATAGTCATGGGCC 59.285 38.462 0.00 0.00 36.39 5.80
2603 3934 9.983024 TCCTCCCAGTTAATTTGATTATTACAA 57.017 29.630 0.00 0.00 0.00 2.41
2607 3938 8.893563 TGTTCCTCCCAGTTAATTTGATTATT 57.106 30.769 0.00 0.00 0.00 1.40
2608 3939 8.893563 TTGTTCCTCCCAGTTAATTTGATTAT 57.106 30.769 0.00 0.00 0.00 1.28
2654 4343 7.432252 CCCGTGAATTGTAGCAAGAATATTTTC 59.568 37.037 0.00 0.00 0.00 2.29
2704 4401 7.857885 GCAGAATACTACCGTTAATTAGTACGT 59.142 37.037 8.46 0.00 34.40 3.57
2705 4402 7.857389 TGCAGAATACTACCGTTAATTAGTACG 59.143 37.037 3.23 3.23 34.40 3.67
2706 4403 9.520204 TTGCAGAATACTACCGTTAATTAGTAC 57.480 33.333 0.00 0.00 34.40 2.73
2774 4471 1.697284 GGAGCCAATCCTTCATTCCC 58.303 55.000 0.00 0.00 45.64 3.97
2807 4504 0.525668 CGAGAAGGGGTCGATCAACG 60.526 60.000 0.00 0.00 39.92 4.10
2834 4531 2.704190 AAGACTTGACCCTCTCCAGA 57.296 50.000 0.00 0.00 0.00 3.86
2861 4558 0.458669 CCTTAGCTTTGCCATGCCTG 59.541 55.000 0.00 0.00 0.00 4.85
2873 4570 7.235606 TGCATATATTACTTCACCTCCTTAGCT 59.764 37.037 0.00 0.00 0.00 3.32
2900 4597 2.014068 GCACATGCTCACCCCTAACTC 61.014 57.143 0.00 0.00 38.21 3.01
2901 4598 0.035056 GCACATGCTCACCCCTAACT 60.035 55.000 0.00 0.00 38.21 2.24
2902 4599 0.322456 TGCACATGCTCACCCCTAAC 60.322 55.000 5.31 0.00 42.66 2.34
2903 4600 0.403655 TTGCACATGCTCACCCCTAA 59.596 50.000 5.31 0.00 42.66 2.69
2905 4602 1.604593 GTTGCACATGCTCACCCCT 60.605 57.895 5.31 0.00 42.66 4.79
2906 4603 1.181098 AAGTTGCACATGCTCACCCC 61.181 55.000 5.31 0.00 42.66 4.95
2926 4644 7.413328 CGAGTTTGATTTCTCTCATATGCAACA 60.413 37.037 0.00 0.00 0.00 3.33
2927 4645 6.904011 CGAGTTTGATTTCTCTCATATGCAAC 59.096 38.462 0.00 0.00 0.00 4.17
2928 4646 6.037500 CCGAGTTTGATTTCTCTCATATGCAA 59.962 38.462 0.00 0.00 0.00 4.08
2929 4647 5.525012 CCGAGTTTGATTTCTCTCATATGCA 59.475 40.000 0.00 0.00 0.00 3.96
2930 4648 5.755375 TCCGAGTTTGATTTCTCTCATATGC 59.245 40.000 0.00 0.00 0.00 3.14
2931 4649 7.654923 TCATCCGAGTTTGATTTCTCTCATATG 59.345 37.037 0.00 0.00 0.00 1.78
2932 4650 7.730084 TCATCCGAGTTTGATTTCTCTCATAT 58.270 34.615 0.00 0.00 0.00 1.78
2933 4651 7.112452 TCATCCGAGTTTGATTTCTCTCATA 57.888 36.000 0.00 0.00 0.00 2.15
2968 4836 1.197036 GGCAGGTTAGACTTTGCGTTC 59.803 52.381 0.00 0.00 37.43 3.95
2974 6657 6.622427 AATACTAGTGGCAGGTTAGACTTT 57.378 37.500 5.39 0.00 0.00 2.66
2978 6661 7.670605 ATGTAAATACTAGTGGCAGGTTAGA 57.329 36.000 5.39 0.00 0.00 2.10
2982 6665 5.664006 TGGTATGTAAATACTAGTGGCAGGT 59.336 40.000 5.39 0.00 0.00 4.00
2993 6676 4.574828 CACCTGCCACTGGTATGTAAATAC 59.425 45.833 0.00 0.00 33.97 1.89
3039 6722 5.240844 CGGAAATATTAGTGGGGGACATTTC 59.759 44.000 0.00 0.00 32.66 2.17
3044 6727 3.851458 ACGGAAATATTAGTGGGGGAC 57.149 47.619 0.00 0.00 0.00 4.46
3048 6731 6.709018 ATTTGGAACGGAAATATTAGTGGG 57.291 37.500 0.00 0.00 0.00 4.61
3049 6732 8.899771 AGTAATTTGGAACGGAAATATTAGTGG 58.100 33.333 0.00 0.00 0.00 4.00
3050 6733 9.931210 GAGTAATTTGGAACGGAAATATTAGTG 57.069 33.333 0.00 0.00 0.00 2.74
3051 6734 8.823818 CGAGTAATTTGGAACGGAAATATTAGT 58.176 33.333 0.00 0.00 0.00 2.24
3052 6735 8.823818 ACGAGTAATTTGGAACGGAAATATTAG 58.176 33.333 0.00 0.00 0.00 1.73
3053 6736 8.721019 ACGAGTAATTTGGAACGGAAATATTA 57.279 30.769 0.00 0.00 0.00 0.98
3054 6737 7.464977 CGACGAGTAATTTGGAACGGAAATATT 60.465 37.037 0.00 0.00 0.00 1.28
3055 6738 6.019318 CGACGAGTAATTTGGAACGGAAATAT 60.019 38.462 0.00 0.00 0.00 1.28
3056 6739 5.289193 CGACGAGTAATTTGGAACGGAAATA 59.711 40.000 0.00 0.00 0.00 1.40
3057 6740 4.092383 CGACGAGTAATTTGGAACGGAAAT 59.908 41.667 0.00 0.00 0.00 2.17
3058 6741 3.429543 CGACGAGTAATTTGGAACGGAAA 59.570 43.478 0.00 0.00 0.00 3.13
3059 6742 2.988493 CGACGAGTAATTTGGAACGGAA 59.012 45.455 0.00 0.00 0.00 4.30
3060 6743 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
3061 6744 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
3062 6745 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
3063 6746 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
3064 6747 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
3065 6748 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
3066 6749 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
3067 6750 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
3068 6751 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
3069 6752 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
3070 6753 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
3071 6754 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3072 6755 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3073 6756 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3074 6757 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3075 6758 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
3076 6759 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
3077 6760 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
3090 6773 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
3091 6774 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
3092 6775 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
3093 6776 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
3094 6777 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
3095 6778 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
3096 6779 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3097 6780 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3098 6781 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3099 6782 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
3100 6783 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
3101 6784 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
3102 6785 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
3103 6786 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
3104 6787 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
3105 6788 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
3106 6789 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
3107 6790 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
3108 6791 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
3109 6792 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
3110 6793 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
3111 6794 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3112 6795 3.841643 TCTCCGTTCCAAATTACTCGTC 58.158 45.455 0.00 0.00 0.00 4.20
3113 6796 3.508793 TCTCTCCGTTCCAAATTACTCGT 59.491 43.478 0.00 0.00 0.00 4.18
3114 6797 4.106029 TCTCTCCGTTCCAAATTACTCG 57.894 45.455 0.00 0.00 0.00 4.18
3115 6798 5.074584 ACTCTCTCCGTTCCAAATTACTC 57.925 43.478 0.00 0.00 0.00 2.59
3116 6799 5.479375 TGTACTCTCTCCGTTCCAAATTACT 59.521 40.000 0.00 0.00 0.00 2.24
3117 6800 5.717119 TGTACTCTCTCCGTTCCAAATTAC 58.283 41.667 0.00 0.00 0.00 1.89
3118 6801 5.988310 TGTACTCTCTCCGTTCCAAATTA 57.012 39.130 0.00 0.00 0.00 1.40
3119 6802 4.884668 TGTACTCTCTCCGTTCCAAATT 57.115 40.909 0.00 0.00 0.00 1.82
3120 6803 5.452077 GCTATGTACTCTCTCCGTTCCAAAT 60.452 44.000 0.00 0.00 0.00 2.32
3121 6804 4.142227 GCTATGTACTCTCTCCGTTCCAAA 60.142 45.833 0.00 0.00 0.00 3.28
3122 6805 3.380637 GCTATGTACTCTCTCCGTTCCAA 59.619 47.826 0.00 0.00 0.00 3.53
3123 6806 2.950309 GCTATGTACTCTCTCCGTTCCA 59.050 50.000 0.00 0.00 0.00 3.53
3124 6807 2.950309 TGCTATGTACTCTCTCCGTTCC 59.050 50.000 0.00 0.00 0.00 3.62
3125 6808 3.628487 ACTGCTATGTACTCTCTCCGTTC 59.372 47.826 0.00 0.00 0.00 3.95
3126 6809 3.378742 CACTGCTATGTACTCTCTCCGTT 59.621 47.826 0.00 0.00 0.00 4.44
3127 6810 2.946329 CACTGCTATGTACTCTCTCCGT 59.054 50.000 0.00 0.00 0.00 4.69
3128 6811 2.292016 CCACTGCTATGTACTCTCTCCG 59.708 54.545 0.00 0.00 0.00 4.63
3129 6812 3.556999 TCCACTGCTATGTACTCTCTCC 58.443 50.000 0.00 0.00 0.00 3.71
3130 6813 3.568007 CCTCCACTGCTATGTACTCTCTC 59.432 52.174 0.00 0.00 0.00 3.20
3131 6814 3.203263 TCCTCCACTGCTATGTACTCTCT 59.797 47.826 0.00 0.00 0.00 3.10
3132 6815 3.556999 TCCTCCACTGCTATGTACTCTC 58.443 50.000 0.00 0.00 0.00 3.20
3133 6816 3.671740 TCCTCCACTGCTATGTACTCT 57.328 47.619 0.00 0.00 0.00 3.24
3134 6817 4.737855 TTTCCTCCACTGCTATGTACTC 57.262 45.455 0.00 0.00 0.00 2.59
3135 6818 5.700402 ATTTTCCTCCACTGCTATGTACT 57.300 39.130 0.00 0.00 0.00 2.73
3136 6819 6.821665 TGTAATTTTCCTCCACTGCTATGTAC 59.178 38.462 0.00 0.00 0.00 2.90
3137 6820 6.953101 TGTAATTTTCCTCCACTGCTATGTA 58.047 36.000 0.00 0.00 0.00 2.29
3138 6821 5.815581 TGTAATTTTCCTCCACTGCTATGT 58.184 37.500 0.00 0.00 0.00 2.29
3139 6822 5.882557 ACTGTAATTTTCCTCCACTGCTATG 59.117 40.000 0.00 0.00 0.00 2.23
3140 6823 5.882557 CACTGTAATTTTCCTCCACTGCTAT 59.117 40.000 0.00 0.00 0.00 2.97
3141 6824 5.245531 CACTGTAATTTTCCTCCACTGCTA 58.754 41.667 0.00 0.00 0.00 3.49
3142 6825 4.074970 CACTGTAATTTTCCTCCACTGCT 58.925 43.478 0.00 0.00 0.00 4.24
3143 6826 3.191371 CCACTGTAATTTTCCTCCACTGC 59.809 47.826 0.00 0.00 0.00 4.40
3144 6827 3.191371 GCCACTGTAATTTTCCTCCACTG 59.809 47.826 0.00 0.00 0.00 3.66
3145 6828 3.421844 GCCACTGTAATTTTCCTCCACT 58.578 45.455 0.00 0.00 0.00 4.00
3146 6829 2.492088 GGCCACTGTAATTTTCCTCCAC 59.508 50.000 0.00 0.00 0.00 4.02
3147 6830 2.802719 GGCCACTGTAATTTTCCTCCA 58.197 47.619 0.00 0.00 0.00 3.86
3148 6831 1.743394 CGGCCACTGTAATTTTCCTCC 59.257 52.381 2.24 0.00 0.00 4.30
3149 6832 2.433436 ACGGCCACTGTAATTTTCCTC 58.567 47.619 2.24 0.00 0.00 3.71
3150 6833 2.556622 CAACGGCCACTGTAATTTTCCT 59.443 45.455 2.24 0.00 0.00 3.36
3151 6834 2.924880 GCAACGGCCACTGTAATTTTCC 60.925 50.000 2.24 0.00 0.00 3.13
3152 6835 2.287909 TGCAACGGCCACTGTAATTTTC 60.288 45.455 2.24 0.00 40.13 2.29
3153 6836 1.683917 TGCAACGGCCACTGTAATTTT 59.316 42.857 2.24 0.00 40.13 1.82
3154 6837 1.000717 GTGCAACGGCCACTGTAATTT 60.001 47.619 2.24 0.00 40.13 1.82
3155 6838 0.596082 GTGCAACGGCCACTGTAATT 59.404 50.000 2.24 0.00 40.13 1.40
3156 6839 1.241315 GGTGCAACGGCCACTGTAAT 61.241 55.000 2.24 0.00 40.13 1.89
3157 6840 1.894756 GGTGCAACGGCCACTGTAA 60.895 57.895 2.24 0.00 40.13 2.41
3158 6841 2.281208 GGTGCAACGGCCACTGTA 60.281 61.111 2.24 0.00 40.13 2.74
3159 6842 4.497984 TGGTGCAACGGCCACTGT 62.498 61.111 2.24 0.00 40.13 3.55
3168 6851 4.947147 TGGGCCGAGTGGTGCAAC 62.947 66.667 0.00 0.00 37.67 4.17
3169 6852 3.918253 GATGGGCCGAGTGGTGCAA 62.918 63.158 0.00 0.00 37.67 4.08
3170 6853 4.408821 GATGGGCCGAGTGGTGCA 62.409 66.667 0.00 0.00 37.67 4.57
3171 6854 4.408821 TGATGGGCCGAGTGGTGC 62.409 66.667 0.00 0.00 37.67 5.01
3172 6855 2.436646 GTGATGGGCCGAGTGGTG 60.437 66.667 0.00 0.00 37.67 4.17
3173 6856 2.607750 AGTGATGGGCCGAGTGGT 60.608 61.111 0.00 0.00 37.67 4.16
3174 6857 2.124983 CAGTGATGGGCCGAGTGG 60.125 66.667 0.00 0.00 38.77 4.00
3175 6858 1.613317 TACCAGTGATGGGCCGAGTG 61.613 60.000 0.00 0.00 0.00 3.51
3176 6859 1.305802 TACCAGTGATGGGCCGAGT 60.306 57.895 0.00 0.00 0.00 4.18
3177 6860 1.144057 GTACCAGTGATGGGCCGAG 59.856 63.158 0.00 0.00 0.00 4.63
3178 6861 0.907704 AAGTACCAGTGATGGGCCGA 60.908 55.000 0.00 0.00 0.00 5.54
3179 6862 0.744414 CAAGTACCAGTGATGGGCCG 60.744 60.000 0.00 0.00 0.00 6.13
3180 6863 0.618458 TCAAGTACCAGTGATGGGCC 59.382 55.000 0.00 0.00 0.00 5.80
3181 6864 1.407437 CCTCAAGTACCAGTGATGGGC 60.407 57.143 0.00 0.00 0.00 5.36
3182 6865 1.909302 ACCTCAAGTACCAGTGATGGG 59.091 52.381 0.00 0.00 0.00 4.00
3183 6866 2.303022 ACACCTCAAGTACCAGTGATGG 59.697 50.000 0.00 0.00 32.76 3.51
3184 6867 3.685139 ACACCTCAAGTACCAGTGATG 57.315 47.619 0.00 0.72 32.76 3.07
3185 6868 3.306088 CGAACACCTCAAGTACCAGTGAT 60.306 47.826 0.00 0.00 32.76 3.06
3186 6869 2.035449 CGAACACCTCAAGTACCAGTGA 59.965 50.000 0.00 0.00 32.76 3.41
3187 6870 2.404215 CGAACACCTCAAGTACCAGTG 58.596 52.381 0.00 0.00 34.61 3.66
3188 6871 1.343465 CCGAACACCTCAAGTACCAGT 59.657 52.381 0.00 0.00 0.00 4.00
3189 6872 1.616865 TCCGAACACCTCAAGTACCAG 59.383 52.381 0.00 0.00 0.00 4.00
3190 6873 1.707106 TCCGAACACCTCAAGTACCA 58.293 50.000 0.00 0.00 0.00 3.25
3191 6874 2.496470 AGATCCGAACACCTCAAGTACC 59.504 50.000 0.00 0.00 0.00 3.34
3192 6875 3.731264 CGAGATCCGAACACCTCAAGTAC 60.731 52.174 0.00 0.00 41.76 2.73
3193 6876 2.422479 CGAGATCCGAACACCTCAAGTA 59.578 50.000 0.00 0.00 41.76 2.24
3194 6877 1.202582 CGAGATCCGAACACCTCAAGT 59.797 52.381 0.00 0.00 41.76 3.16
3195 6878 1.469940 CCGAGATCCGAACACCTCAAG 60.470 57.143 5.32 0.00 41.76 3.02
3196 6879 0.530744 CCGAGATCCGAACACCTCAA 59.469 55.000 5.32 0.00 41.76 3.02
3197 6880 1.320344 CCCGAGATCCGAACACCTCA 61.320 60.000 5.32 0.00 41.76 3.86
3198 6881 1.035932 TCCCGAGATCCGAACACCTC 61.036 60.000 5.32 0.00 41.76 3.85
3199 6882 0.397254 ATCCCGAGATCCGAACACCT 60.397 55.000 5.32 0.00 41.76 4.00
3239 6922 0.037303 AACTACGTCTCCCCGACTCA 59.963 55.000 0.00 0.00 40.59 3.41
3430 7113 1.160137 GCTCCACAAAACGATGCTCT 58.840 50.000 0.00 0.00 0.00 4.09
3576 7260 1.556911 GAAGCCCTTGGAGATCTGTCA 59.443 52.381 0.00 0.00 0.00 3.58
3609 7294 0.112218 ATGCTGCCAAGTACCACCAA 59.888 50.000 0.00 0.00 0.00 3.67
3676 7361 2.930562 GGCACCTCCTCCCTGTGT 60.931 66.667 0.00 0.00 32.62 3.72
3714 7399 1.227639 GCTCGGTCTAGCTATCGTCA 58.772 55.000 0.00 0.00 39.50 4.35
3725 7410 0.674895 GCATCAACCTTGCTCGGTCT 60.675 55.000 0.00 0.00 35.89 3.85
3762 7447 1.973281 CAACTGCCACCGCTCCATT 60.973 57.895 0.00 0.00 35.36 3.16
3831 7516 1.065997 ACCCCAACCTAGCCACTTGT 61.066 55.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.