Multiple sequence alignment - TraesCS3B01G368500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G368500 chr3B 100.000 2743 0 0 1 2743 580787968 580785226 0.000000e+00 5066.0
1 TraesCS3B01G368500 chr3B 88.146 793 86 3 807 1599 408345656 408344872 0.000000e+00 937.0
2 TraesCS3B01G368500 chr3B 83.333 612 91 8 953 1558 99696760 99696154 3.090000e-154 555.0
3 TraesCS3B01G368500 chr3B 88.172 372 40 3 219 587 408346391 408346021 9.020000e-120 440.0
4 TraesCS3B01G368500 chr3B 97.368 38 1 0 2408 2445 727745647 727745684 6.340000e-07 65.8
5 TraesCS3B01G368500 chr3D 92.987 1269 68 13 821 2081 442976064 442974809 0.000000e+00 1831.0
6 TraesCS3B01G368500 chr3D 94.852 777 39 1 1 776 442976819 442976043 0.000000e+00 1212.0
7 TraesCS3B01G368500 chr3D 87.032 401 21 15 2344 2735 442974288 442973910 9.080000e-115 424.0
8 TraesCS3B01G368500 chr3A 90.190 1213 70 20 1146 2345 584112196 584111020 0.000000e+00 1535.0
9 TraesCS3B01G368500 chr3A 93.782 772 45 3 1 770 584115728 584114958 0.000000e+00 1157.0
10 TraesCS3B01G368500 chr3A 94.737 76 3 1 2344 2419 584096029 584095955 1.730000e-22 117.0
11 TraesCS3B01G368500 chr3A 87.037 108 6 7 2628 2735 584095905 584095806 6.210000e-22 115.0
12 TraesCS3B01G368500 chr6D 85.437 721 86 13 942 1648 155840561 155839846 0.000000e+00 732.0
13 TraesCS3B01G368500 chr7D 79.247 983 156 26 672 1620 89289726 89290694 2.300000e-180 641.0
14 TraesCS3B01G368500 chr7B 77.966 1062 191 28 589 1625 40194399 40195442 2.320000e-175 625.0
15 TraesCS3B01G368500 chr7A 78.910 991 155 24 589 1538 90477201 90478178 8.340000e-175 623.0
16 TraesCS3B01G368500 chr5B 77.331 944 164 35 724 1624 57116975 57116039 1.880000e-141 512.0
17 TraesCS3B01G368500 chr5B 77.221 878 170 17 748 1599 248389313 248388440 1.140000e-133 486.0
18 TraesCS3B01G368500 chr5B 90.769 65 6 0 2387 2451 17551109 17551045 1.350000e-13 87.9
19 TraesCS3B01G368500 chr6B 80.570 597 111 5 956 1550 700251067 700251660 3.220000e-124 455.0
20 TraesCS3B01G368500 chr2B 89.286 84 9 0 2228 2311 448922665 448922582 3.740000e-19 106.0
21 TraesCS3B01G368500 chr2B 84.615 65 6 3 2387 2449 47506203 47506265 8.200000e-06 62.1
22 TraesCS3B01G368500 chr1D 85.577 104 12 3 2344 2446 313794336 313794437 3.740000e-19 106.0
23 TraesCS3B01G368500 chr4B 100.000 36 0 0 2410 2445 237143054 237143019 1.760000e-07 67.6
24 TraesCS3B01G368500 chr2A 79.592 98 9 6 2346 2433 511535562 511535466 2.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G368500 chr3B 580785226 580787968 2742 True 5066.000000 5066 100.000000 1 2743 1 chr3B.!!$R2 2742
1 TraesCS3B01G368500 chr3B 408344872 408346391 1519 True 688.500000 937 88.159000 219 1599 2 chr3B.!!$R3 1380
2 TraesCS3B01G368500 chr3B 99696154 99696760 606 True 555.000000 555 83.333000 953 1558 1 chr3B.!!$R1 605
3 TraesCS3B01G368500 chr3D 442973910 442976819 2909 True 1155.666667 1831 91.623667 1 2735 3 chr3D.!!$R1 2734
4 TraesCS3B01G368500 chr3A 584111020 584115728 4708 True 1346.000000 1535 91.986000 1 2345 2 chr3A.!!$R2 2344
5 TraesCS3B01G368500 chr6D 155839846 155840561 715 True 732.000000 732 85.437000 942 1648 1 chr6D.!!$R1 706
6 TraesCS3B01G368500 chr7D 89289726 89290694 968 False 641.000000 641 79.247000 672 1620 1 chr7D.!!$F1 948
7 TraesCS3B01G368500 chr7B 40194399 40195442 1043 False 625.000000 625 77.966000 589 1625 1 chr7B.!!$F1 1036
8 TraesCS3B01G368500 chr7A 90477201 90478178 977 False 623.000000 623 78.910000 589 1538 1 chr7A.!!$F1 949
9 TraesCS3B01G368500 chr5B 57116039 57116975 936 True 512.000000 512 77.331000 724 1624 1 chr5B.!!$R2 900
10 TraesCS3B01G368500 chr5B 248388440 248389313 873 True 486.000000 486 77.221000 748 1599 1 chr5B.!!$R3 851
11 TraesCS3B01G368500 chr6B 700251067 700251660 593 False 455.000000 455 80.570000 956 1550 1 chr6B.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 1020 5.006746 GCCTTGGACGATGTTATACAAAGAG 59.993 44.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2577 5618 0.247736 CGGGAGAAGTGGAGAAGTGG 59.752 60.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 224 8.656849 CACAAGTAGGTAGTTGTAAATCATCAC 58.343 37.037 9.40 0.00 45.34 3.06
366 371 6.183360 GCATTTTGAATGTGACATGATGCAAT 60.183 34.615 17.89 5.76 36.68 3.56
635 865 6.406624 CCTTGATCTGCAAATTCCTTTATGCT 60.407 38.462 0.00 0.00 39.49 3.79
666 896 9.409312 TGTTGCAATAAGTGAAATGTTATCTTG 57.591 29.630 0.59 0.00 0.00 3.02
779 1020 5.006746 GCCTTGGACGATGTTATACAAAGAG 59.993 44.000 0.00 0.00 0.00 2.85
789 1031 7.926555 CGATGTTATACAAAGAGGGTGTTATCT 59.073 37.037 0.00 0.00 0.00 1.98
919 1175 9.643693 ATGTTATCATTTGTTTGTGATTCTTCC 57.356 29.630 0.00 0.00 36.53 3.46
935 1191 8.023706 GTGATTCTTCCTCAATTGGTTAGAAAC 58.976 37.037 5.42 8.99 34.89 2.78
939 1195 5.319043 TCCTCAATTGGTTAGAAACAGGT 57.681 39.130 5.42 0.00 0.00 4.00
1206 3930 3.057019 TGACATCACTTTAGCACACGTC 58.943 45.455 0.00 0.00 0.00 4.34
1398 4132 4.348863 AGAGATGGATAGTTGGATGCAC 57.651 45.455 0.00 0.00 29.13 4.57
1409 4143 2.490903 GTTGGATGCACTTGAAGCTCAT 59.509 45.455 0.00 0.00 0.00 2.90
1418 4152 0.107703 TTGAAGCTCATGGTAGGCCG 60.108 55.000 0.00 0.00 37.67 6.13
1441 4177 5.065988 CGGGAAGGTTCAAAATACGATGATT 59.934 40.000 0.00 0.00 0.00 2.57
1672 4419 5.351458 GCATATGCATCATCGATGTACCTA 58.649 41.667 24.09 12.26 41.60 3.08
1699 4446 2.221055 GCAATGTCCGATTACTAAGGCG 59.779 50.000 0.00 0.00 0.00 5.52
1716 4463 1.022451 GCGATTTGGCGTTGGGTAGA 61.022 55.000 0.00 0.00 0.00 2.59
1749 4496 3.882888 GGTTGTGAAACTCTGAATCCACA 59.117 43.478 0.00 0.00 38.04 4.17
1754 4501 6.768483 TGTGAAACTCTGAATCCACAATCTA 58.232 36.000 0.00 0.00 38.04 1.98
1768 4515 1.003580 CAATCTAGGGCCACTGTGTGT 59.996 52.381 6.18 0.00 0.00 3.72
1781 4528 3.868661 CACTGTGTGTAGTGCAACAAGTA 59.131 43.478 0.00 0.00 41.31 2.24
1881 4632 4.144297 CTGTTTCAGGGGAAGATCAACAA 58.856 43.478 0.00 0.00 33.82 2.83
1883 4634 2.879103 TCAGGGGAAGATCAACAACC 57.121 50.000 0.00 0.00 0.00 3.77
1898 4649 5.301555 TCAACAACCTAAACGATGTCATCA 58.698 37.500 13.22 0.00 0.00 3.07
1928 4679 5.911752 TCAGAAGATCATTAGAGTCTTGGC 58.088 41.667 0.00 0.00 32.67 4.52
1929 4680 4.744137 CAGAAGATCATTAGAGTCTTGGCG 59.256 45.833 0.00 0.00 32.67 5.69
1930 4681 4.404073 AGAAGATCATTAGAGTCTTGGCGT 59.596 41.667 0.00 0.00 32.67 5.68
1931 4682 4.744795 AGATCATTAGAGTCTTGGCGTT 57.255 40.909 0.00 0.00 0.00 4.84
1932 4683 5.091261 AGATCATTAGAGTCTTGGCGTTT 57.909 39.130 0.00 0.00 0.00 3.60
1933 4684 6.222038 AGATCATTAGAGTCTTGGCGTTTA 57.778 37.500 0.00 0.00 0.00 2.01
1934 4685 6.043411 AGATCATTAGAGTCTTGGCGTTTAC 58.957 40.000 0.00 0.00 0.00 2.01
1992 4744 1.889829 GGATCCACCCTGAGAGTATCG 59.110 57.143 6.95 0.00 42.67 2.92
2004 4756 5.513441 CCTGAGAGTATCGACCTAGGTATGT 60.513 48.000 16.29 6.02 42.67 2.29
2014 4766 2.863879 ACCTAGGTATGTAGGGAGGTGT 59.136 50.000 14.41 0.00 43.67 4.16
2087 5081 3.372206 GCATCCGAGCATGTATTATCCAC 59.628 47.826 0.00 0.00 0.00 4.02
2096 5090 7.010830 CGAGCATGTATTATCCACCTATCAATG 59.989 40.741 0.00 0.00 0.00 2.82
2105 5099 4.532834 TCCACCTATCAATGTTAAAGCCC 58.467 43.478 0.00 0.00 0.00 5.19
2106 5100 4.229582 TCCACCTATCAATGTTAAAGCCCT 59.770 41.667 0.00 0.00 0.00 5.19
2150 5144 1.242076 ACATTGTGCTGGAACTGAGC 58.758 50.000 0.00 0.00 36.95 4.26
2156 5150 1.246056 TGCTGGAACTGAGCATTGCC 61.246 55.000 4.70 0.00 41.56 4.52
2166 5160 3.011818 CTGAGCATTGCCATGTGTCTTA 58.988 45.455 4.70 0.00 32.28 2.10
2179 5173 6.337356 CCATGTGTCTTACCTGTTTTGTTTT 58.663 36.000 0.00 0.00 0.00 2.43
2197 5191 9.897744 TTTTGTTTTAGTGAGAAGCAGATAATG 57.102 29.630 0.00 0.00 0.00 1.90
2207 5201 9.548208 GTGAGAAGCAGATAATGTTTTCTTTAC 57.452 33.333 0.00 0.00 36.05 2.01
2285 5280 6.666678 ACTTTGAGGATGAATGGTATCATGT 58.333 36.000 0.00 0.00 40.08 3.21
2289 5284 6.057533 TGAGGATGAATGGTATCATGTGTTC 58.942 40.000 0.00 0.00 40.08 3.18
2331 5330 4.605640 TTTTCAAAGCCCTCATTTCAGG 57.394 40.909 0.00 0.00 0.00 3.86
2412 5444 8.380743 TGAATTTTGAAAAATGTGAATGGAGG 57.619 30.769 1.91 0.00 38.53 4.30
2413 5445 6.806388 ATTTTGAAAAATGTGAATGGAGGC 57.194 33.333 0.00 0.00 37.24 4.70
2414 5446 3.959535 TGAAAAATGTGAATGGAGGCC 57.040 42.857 0.00 0.00 0.00 5.19
2415 5447 3.509442 TGAAAAATGTGAATGGAGGCCT 58.491 40.909 3.86 3.86 0.00 5.19
2416 5448 3.903090 TGAAAAATGTGAATGGAGGCCTT 59.097 39.130 6.77 0.00 0.00 4.35
2417 5449 4.021192 TGAAAAATGTGAATGGAGGCCTTC 60.021 41.667 6.77 4.87 0.00 3.46
2418 5450 2.905415 AATGTGAATGGAGGCCTTCA 57.095 45.000 18.48 18.48 0.00 3.02
2419 5451 3.393426 AATGTGAATGGAGGCCTTCAT 57.607 42.857 21.91 21.91 34.18 2.57
2420 5452 2.133281 TGTGAATGGAGGCCTTCATG 57.867 50.000 27.92 0.00 34.18 3.07
2421 5453 1.341285 TGTGAATGGAGGCCTTCATGG 60.341 52.381 27.92 0.00 34.18 3.66
2422 5454 1.064463 GTGAATGGAGGCCTTCATGGA 60.064 52.381 27.92 13.97 38.35 3.41
2433 5465 2.967929 CTTCATGGAGCTCGGCCTCG 62.968 65.000 7.83 0.00 32.57 4.63
2456 5488 6.452244 GAAAAGCAATTTTCGCAGTGTTAT 57.548 33.333 0.00 0.00 32.16 1.89
2457 5489 7.561237 GAAAAGCAATTTTCGCAGTGTTATA 57.439 32.000 0.00 0.00 32.16 0.98
2458 5490 8.173321 GAAAAGCAATTTTCGCAGTGTTATAT 57.827 30.769 0.00 0.00 32.16 0.86
2460 5492 9.632807 AAAAGCAATTTTCGCAGTGTTATATAA 57.367 25.926 0.00 0.00 0.00 0.98
2463 5495 8.458843 AGCAATTTTCGCAGTGTTATATAACTT 58.541 29.630 22.82 11.05 37.12 2.66
2464 5496 9.710979 GCAATTTTCGCAGTGTTATATAACTTA 57.289 29.630 22.82 4.62 37.12 2.24
2496 5537 3.144506 CAGACTCCTGTCAAAGCAACAT 58.855 45.455 0.00 0.00 45.20 2.71
2551 5592 3.623960 CGATAGGGTGCAAATACCGAAAA 59.376 43.478 0.00 0.00 41.79 2.29
2565 5606 9.739786 CAAATACCGAAAATTTACATCAAAAGC 57.260 29.630 0.00 0.00 0.00 3.51
2573 5614 3.334583 TTACATCAAAAGCTCGAGCCT 57.665 42.857 32.94 19.32 43.38 4.58
2574 5615 2.191128 ACATCAAAAGCTCGAGCCTT 57.809 45.000 32.94 24.40 43.38 4.35
2575 5616 2.079925 ACATCAAAAGCTCGAGCCTTC 58.920 47.619 32.94 6.74 43.38 3.46
2576 5617 2.289945 ACATCAAAAGCTCGAGCCTTCT 60.290 45.455 32.94 12.76 43.38 2.85
2577 5618 2.086054 TCAAAAGCTCGAGCCTTCTC 57.914 50.000 32.94 5.52 43.38 2.87
2578 5619 1.082690 CAAAAGCTCGAGCCTTCTCC 58.917 55.000 32.94 4.72 43.38 3.71
2579 5620 0.687354 AAAAGCTCGAGCCTTCTCCA 59.313 50.000 32.94 0.00 43.38 3.86
2580 5621 0.036858 AAAGCTCGAGCCTTCTCCAC 60.037 55.000 32.94 3.13 43.38 4.02
2581 5622 0.902516 AAGCTCGAGCCTTCTCCACT 60.903 55.000 32.94 9.10 43.38 4.00
2582 5623 0.902516 AGCTCGAGCCTTCTCCACTT 60.903 55.000 32.94 8.29 43.38 3.16
2643 5684 2.202401 GGTCACGTACGAGCGTCC 60.202 66.667 24.41 13.02 43.83 4.79
2653 5694 1.004918 CGAGCGTCCCTTCCACTTT 60.005 57.895 0.00 0.00 0.00 2.66
2654 5695 1.291877 CGAGCGTCCCTTCCACTTTG 61.292 60.000 0.00 0.00 0.00 2.77
2684 5725 1.284408 GTCGCCAAAATCAACCGCA 59.716 52.632 0.00 0.00 0.00 5.69
2720 5761 2.224548 GCCAGAGATATGTACAACCCCC 60.225 54.545 0.00 0.00 0.00 5.40
2735 5776 3.322191 ACCCCCAAAAAGAAGCTTACA 57.678 42.857 0.00 0.00 0.00 2.41
2736 5777 2.963101 ACCCCCAAAAAGAAGCTTACAC 59.037 45.455 0.00 0.00 0.00 2.90
2737 5778 3.230976 CCCCCAAAAAGAAGCTTACACT 58.769 45.455 0.00 0.00 0.00 3.55
2738 5779 3.255888 CCCCCAAAAAGAAGCTTACACTC 59.744 47.826 0.00 0.00 0.00 3.51
2739 5780 3.255888 CCCCAAAAAGAAGCTTACACTCC 59.744 47.826 0.00 0.00 0.00 3.85
2740 5781 3.888930 CCCAAAAAGAAGCTTACACTCCA 59.111 43.478 0.00 0.00 0.00 3.86
2741 5782 4.261614 CCCAAAAAGAAGCTTACACTCCAC 60.262 45.833 0.00 0.00 0.00 4.02
2742 5783 4.261614 CCAAAAAGAAGCTTACACTCCACC 60.262 45.833 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
635 865 8.659925 AACATTTCACTTATTGCAACAATGAA 57.340 26.923 0.00 7.20 0.00 2.57
666 896 2.774439 AACACCTCAAATGTTGCGTC 57.226 45.000 0.00 0.00 38.84 5.19
779 1020 6.923508 GCCTAATATTTGCAAAGATAACACCC 59.076 38.462 18.97 3.66 0.00 4.61
789 1031 9.717942 ACAATAAACTTGCCTAATATTTGCAAA 57.282 25.926 15.44 15.44 43.69 3.68
918 1174 4.827284 ACACCTGTTTCTAACCAATTGAGG 59.173 41.667 7.12 4.77 0.00 3.86
919 1175 6.710744 AGTACACCTGTTTCTAACCAATTGAG 59.289 38.462 7.12 0.00 0.00 3.02
935 1191 4.940046 AGCTCATCATCAAAAGTACACCTG 59.060 41.667 0.00 0.00 0.00 4.00
939 1195 6.980978 GCTAGTAGCTCATCATCAAAAGTACA 59.019 38.462 15.16 0.00 38.45 2.90
1069 1358 5.041191 TCATATTCTTCTTGCTCCCCTTC 57.959 43.478 0.00 0.00 0.00 3.46
1206 3930 2.401766 GGCCTCCACTGCATTGACG 61.402 63.158 5.49 0.00 0.00 4.35
1398 4132 1.673168 GGCCTACCATGAGCTTCAAG 58.327 55.000 0.00 0.00 35.26 3.02
1409 4143 2.204029 AACCTTCCCGGCCTACCA 60.204 61.111 0.00 0.00 35.61 3.25
1418 4152 6.451064 AATCATCGTATTTTGAACCTTCCC 57.549 37.500 0.00 0.00 0.00 3.97
1441 4177 1.529438 GAAGCGACAATGACGTTCCAA 59.471 47.619 6.98 0.00 0.00 3.53
1672 4419 6.183360 CCTTAGTAATCGGACATTGCCAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
1699 4446 1.129811 CGTTCTACCCAACGCCAAATC 59.870 52.381 0.00 0.00 42.45 2.17
1716 4463 2.902423 TTCACAACCTGCCCAGCGTT 62.902 55.000 0.00 0.00 0.00 4.84
1749 4496 1.362224 ACACACAGTGGCCCTAGATT 58.638 50.000 5.31 0.00 37.94 2.40
1754 4501 1.754745 CACTACACACAGTGGCCCT 59.245 57.895 5.31 0.00 41.88 5.19
1768 4515 3.278574 GCATCCCATACTTGTTGCACTA 58.721 45.455 0.00 0.00 0.00 2.74
1794 4543 1.448540 GCACCAGGGTCGATGTGAG 60.449 63.158 0.00 0.00 0.00 3.51
1805 4554 4.415150 AGGATGTGCGGCACCAGG 62.415 66.667 28.57 0.00 32.73 4.45
1816 4566 3.404869 TCTCCCATACAGTCAGGATGT 57.595 47.619 0.00 0.00 37.40 3.06
1881 4632 3.118738 GGAGGTGATGACATCGTTTAGGT 60.119 47.826 10.79 0.00 33.50 3.08
1883 4634 4.123497 TGGAGGTGATGACATCGTTTAG 57.877 45.455 10.79 0.00 33.50 1.85
1898 4649 6.142498 ACTCTAATGATCTTCTGATGGAGGT 58.858 40.000 0.00 0.00 32.19 3.85
1992 4744 3.117208 ACACCTCCCTACATACCTAGGTC 60.117 52.174 20.32 0.00 35.17 3.85
2004 4756 4.513406 AAAACAAGAACACACCTCCCTA 57.487 40.909 0.00 0.00 0.00 3.53
2039 4791 5.707066 AGGCATTGAGTAAGGAGAGAAAT 57.293 39.130 0.00 0.00 0.00 2.17
2087 5081 4.451900 ACGAGGGCTTTAACATTGATAGG 58.548 43.478 0.00 0.00 0.00 2.57
2096 5090 1.464997 CAGCAAGACGAGGGCTTTAAC 59.535 52.381 0.00 0.00 35.27 2.01
2105 5099 2.964740 TGAAAGATCCAGCAAGACGAG 58.035 47.619 0.00 0.00 0.00 4.18
2106 5100 3.401033 TTGAAAGATCCAGCAAGACGA 57.599 42.857 0.00 0.00 0.00 4.20
2150 5144 3.084039 ACAGGTAAGACACATGGCAATG 58.916 45.455 0.00 0.00 43.29 2.82
2156 5150 8.188139 ACTAAAACAAAACAGGTAAGACACATG 58.812 33.333 0.00 0.00 44.55 3.21
2166 5160 5.417580 TGCTTCTCACTAAAACAAAACAGGT 59.582 36.000 0.00 0.00 0.00 4.00
2179 5173 9.507329 AAAGAAAACATTATCTGCTTCTCACTA 57.493 29.630 0.00 0.00 32.09 2.74
2260 5255 7.067859 CACATGATACCATTCATCCTCAAAGTT 59.932 37.037 0.00 0.00 34.09 2.66
2285 5280 7.446001 AAAACAAATTTGAGGCTTTTGAACA 57.554 28.000 24.64 0.00 35.03 3.18
2403 5435 1.213678 CTCCATGAAGGCCTCCATTCA 59.786 52.381 0.00 4.16 39.59 2.57
2404 5436 1.978454 CTCCATGAAGGCCTCCATTC 58.022 55.000 0.00 0.00 37.29 2.67
2407 5439 1.617536 AGCTCCATGAAGGCCTCCA 60.618 57.895 5.23 0.00 37.29 3.86
2412 5444 2.899339 GCCGAGCTCCATGAAGGC 60.899 66.667 8.47 10.27 37.29 4.35
2413 5445 2.203126 GGCCGAGCTCCATGAAGG 60.203 66.667 8.47 3.22 39.47 3.46
2414 5446 1.227497 GAGGCCGAGCTCCATGAAG 60.227 63.158 8.47 0.00 0.00 3.02
2415 5447 2.903357 GAGGCCGAGCTCCATGAA 59.097 61.111 8.47 0.00 0.00 2.57
2416 5448 3.531207 CGAGGCCGAGCTCCATGA 61.531 66.667 8.47 0.00 38.22 3.07
2417 5449 2.578163 TTTCGAGGCCGAGCTCCATG 62.578 60.000 8.47 0.00 46.39 3.66
2418 5450 1.899437 TTTTCGAGGCCGAGCTCCAT 61.899 55.000 8.47 0.00 46.39 3.41
2419 5451 2.507110 CTTTTCGAGGCCGAGCTCCA 62.507 60.000 8.47 0.00 46.39 3.86
2420 5452 1.811679 CTTTTCGAGGCCGAGCTCC 60.812 63.158 8.47 0.00 46.39 4.70
2421 5453 2.456948 GCTTTTCGAGGCCGAGCTC 61.457 63.158 2.73 2.73 46.39 4.09
2422 5454 2.435059 GCTTTTCGAGGCCGAGCT 60.435 61.111 0.00 0.00 46.39 4.09
2433 5465 4.777140 AACACTGCGAAAATTGCTTTTC 57.223 36.364 1.96 1.96 44.45 2.29
2456 5488 8.857098 GGAGTCTGTGTGGTATCATAAGTTATA 58.143 37.037 0.00 0.00 0.00 0.98
2457 5489 7.565398 AGGAGTCTGTGTGGTATCATAAGTTAT 59.435 37.037 0.00 0.00 0.00 1.89
2458 5490 6.895756 AGGAGTCTGTGTGGTATCATAAGTTA 59.104 38.462 0.00 0.00 0.00 2.24
2460 5492 5.127845 CAGGAGTCTGTGTGGTATCATAAGT 59.872 44.000 0.00 0.00 36.30 2.24
2488 5529 0.957395 CTGGCTCGGTCATGTTGCTT 60.957 55.000 0.00 0.00 0.00 3.91
2496 5537 0.975556 TCCTATTGCTGGCTCGGTCA 60.976 55.000 0.00 0.00 0.00 4.02
2532 5573 5.986501 AAATTTTCGGTATTTGCACCCTA 57.013 34.783 0.00 0.00 34.90 3.53
2551 5592 4.265073 AGGCTCGAGCTTTTGATGTAAAT 58.735 39.130 34.46 4.45 41.70 1.40
2565 5606 1.134175 GAGAAGTGGAGAAGGCTCGAG 59.866 57.143 8.45 8.45 42.25 4.04
2573 5614 2.900546 GGAGAAGTGGAGAAGTGGAGAA 59.099 50.000 0.00 0.00 0.00 2.87
2574 5615 2.530701 GGAGAAGTGGAGAAGTGGAGA 58.469 52.381 0.00 0.00 0.00 3.71
2575 5616 1.552792 GGGAGAAGTGGAGAAGTGGAG 59.447 57.143 0.00 0.00 0.00 3.86
2576 5617 1.645710 GGGAGAAGTGGAGAAGTGGA 58.354 55.000 0.00 0.00 0.00 4.02
2577 5618 0.247736 CGGGAGAAGTGGAGAAGTGG 59.752 60.000 0.00 0.00 0.00 4.00
2578 5619 0.390472 GCGGGAGAAGTGGAGAAGTG 60.390 60.000 0.00 0.00 0.00 3.16
2579 5620 0.543174 AGCGGGAGAAGTGGAGAAGT 60.543 55.000 0.00 0.00 0.00 3.01
2580 5621 0.610687 AAGCGGGAGAAGTGGAGAAG 59.389 55.000 0.00 0.00 0.00 2.85
2581 5622 1.002087 GAAAGCGGGAGAAGTGGAGAA 59.998 52.381 0.00 0.00 0.00 2.87
2582 5623 0.608640 GAAAGCGGGAGAAGTGGAGA 59.391 55.000 0.00 0.00 0.00 3.71
2643 5684 5.301805 ACCAAATTAGTGTCAAAGTGGAAGG 59.698 40.000 0.00 0.00 0.00 3.46
2653 5694 2.552599 TGGCGACCAAATTAGTGTCA 57.447 45.000 0.00 0.00 0.00 3.58
2654 5695 3.907894 TTTGGCGACCAAATTAGTGTC 57.092 42.857 16.73 0.00 46.92 3.67
2684 5725 1.305465 TGGCCAAGGAGCATGCAAT 60.305 52.632 21.98 0.00 0.00 3.56
2720 5761 4.860072 GGTGGAGTGTAAGCTTCTTTTTG 58.140 43.478 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.