Multiple sequence alignment - TraesCS3B01G367900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G367900 | chr3B | 100.000 | 2993 | 0 | 0 | 1 | 2993 | 580061576 | 580064568 | 0.000000e+00 | 5528.0 |
1 | TraesCS3B01G367900 | chr3B | 93.651 | 63 | 3 | 1 | 109 | 170 | 91030482 | 91030420 | 3.180000e-15 | 93.5 |
2 | TraesCS3B01G367900 | chr3D | 90.491 | 2913 | 133 | 54 | 178 | 2993 | 442510477 | 442513342 | 0.000000e+00 | 3712.0 |
3 | TraesCS3B01G367900 | chr3A | 88.294 | 1905 | 112 | 49 | 500 | 2376 | 583747627 | 583749448 | 0.000000e+00 | 2180.0 |
4 | TraesCS3B01G367900 | chr3A | 88.010 | 1251 | 82 | 15 | 1047 | 2271 | 434799142 | 434800350 | 0.000000e+00 | 1417.0 |
5 | TraesCS3B01G367900 | chr3A | 92.123 | 584 | 41 | 3 | 2411 | 2993 | 583749449 | 583750028 | 0.000000e+00 | 819.0 |
6 | TraesCS3B01G367900 | chr3A | 87.791 | 172 | 15 | 4 | 2307 | 2473 | 434800349 | 434800519 | 2.350000e-46 | 196.0 |
7 | TraesCS3B01G367900 | chr3A | 83.945 | 218 | 17 | 12 | 179 | 384 | 583747369 | 583747580 | 3.040000e-45 | 193.0 |
8 | TraesCS3B01G367900 | chr2D | 89.752 | 1249 | 75 | 15 | 1047 | 2269 | 568757266 | 568758487 | 0.000000e+00 | 1548.0 |
9 | TraesCS3B01G367900 | chr5B | 89.448 | 1251 | 73 | 17 | 1053 | 2271 | 524221799 | 524220576 | 0.000000e+00 | 1524.0 |
10 | TraesCS3B01G367900 | chr5B | 93.548 | 62 | 2 | 2 | 114 | 174 | 392707732 | 392707792 | 1.140000e-14 | 91.6 |
11 | TraesCS3B01G367900 | chr5B | 90.769 | 65 | 4 | 2 | 115 | 177 | 596721160 | 596721096 | 5.320000e-13 | 86.1 |
12 | TraesCS3B01G367900 | chr1B | 89.343 | 1248 | 77 | 16 | 1053 | 2271 | 443488940 | 443487720 | 0.000000e+00 | 1517.0 |
13 | TraesCS3B01G367900 | chr7A | 88.514 | 1245 | 75 | 15 | 1053 | 2271 | 48766857 | 48765655 | 0.000000e+00 | 1445.0 |
14 | TraesCS3B01G367900 | chr4D | 88.169 | 1251 | 73 | 23 | 1047 | 2271 | 30394026 | 30395227 | 0.000000e+00 | 1421.0 |
15 | TraesCS3B01G367900 | chr7D | 89.762 | 1094 | 60 | 17 | 1203 | 2271 | 207789238 | 207788172 | 0.000000e+00 | 1352.0 |
16 | TraesCS3B01G367900 | chr1A | 90.510 | 706 | 44 | 15 | 1585 | 2271 | 512465714 | 512466415 | 0.000000e+00 | 911.0 |
17 | TraesCS3B01G367900 | chr6A | 89.813 | 481 | 30 | 8 | 1808 | 2271 | 535421589 | 535421111 | 1.540000e-167 | 599.0 |
18 | TraesCS3B01G367900 | chr6A | 83.554 | 377 | 22 | 9 | 1053 | 1414 | 535421938 | 535421587 | 1.730000e-82 | 316.0 |
19 | TraesCS3B01G367900 | chr6A | 91.176 | 68 | 3 | 3 | 104 | 170 | 457399344 | 457399409 | 4.110000e-14 | 89.8 |
20 | TraesCS3B01G367900 | chr6B | 92.424 | 66 | 3 | 2 | 114 | 177 | 52974434 | 52974369 | 3.180000e-15 | 93.5 |
21 | TraesCS3B01G367900 | chr2A | 94.915 | 59 | 3 | 0 | 112 | 170 | 753531295 | 753531353 | 3.180000e-15 | 93.5 |
22 | TraesCS3B01G367900 | chr4A | 94.915 | 59 | 2 | 1 | 113 | 170 | 8156307 | 8156365 | 1.140000e-14 | 91.6 |
23 | TraesCS3B01G367900 | chr7B | 88.312 | 77 | 5 | 4 | 105 | 177 | 633011252 | 633011176 | 4.110000e-14 | 89.8 |
24 | TraesCS3B01G367900 | chrUn | 83.158 | 95 | 12 | 4 | 85 | 177 | 88208006 | 88207914 | 1.910000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G367900 | chr3B | 580061576 | 580064568 | 2992 | False | 5528.0 | 5528 | 100.000000 | 1 | 2993 | 1 | chr3B.!!$F1 | 2992 |
1 | TraesCS3B01G367900 | chr3D | 442510477 | 442513342 | 2865 | False | 3712.0 | 3712 | 90.491000 | 178 | 2993 | 1 | chr3D.!!$F1 | 2815 |
2 | TraesCS3B01G367900 | chr3A | 583747369 | 583750028 | 2659 | False | 1064.0 | 2180 | 88.120667 | 179 | 2993 | 3 | chr3A.!!$F2 | 2814 |
3 | TraesCS3B01G367900 | chr3A | 434799142 | 434800519 | 1377 | False | 806.5 | 1417 | 87.900500 | 1047 | 2473 | 2 | chr3A.!!$F1 | 1426 |
4 | TraesCS3B01G367900 | chr2D | 568757266 | 568758487 | 1221 | False | 1548.0 | 1548 | 89.752000 | 1047 | 2269 | 1 | chr2D.!!$F1 | 1222 |
5 | TraesCS3B01G367900 | chr5B | 524220576 | 524221799 | 1223 | True | 1524.0 | 1524 | 89.448000 | 1053 | 2271 | 1 | chr5B.!!$R1 | 1218 |
6 | TraesCS3B01G367900 | chr1B | 443487720 | 443488940 | 1220 | True | 1517.0 | 1517 | 89.343000 | 1053 | 2271 | 1 | chr1B.!!$R1 | 1218 |
7 | TraesCS3B01G367900 | chr7A | 48765655 | 48766857 | 1202 | True | 1445.0 | 1445 | 88.514000 | 1053 | 2271 | 1 | chr7A.!!$R1 | 1218 |
8 | TraesCS3B01G367900 | chr4D | 30394026 | 30395227 | 1201 | False | 1421.0 | 1421 | 88.169000 | 1047 | 2271 | 1 | chr4D.!!$F1 | 1224 |
9 | TraesCS3B01G367900 | chr7D | 207788172 | 207789238 | 1066 | True | 1352.0 | 1352 | 89.762000 | 1203 | 2271 | 1 | chr7D.!!$R1 | 1068 |
10 | TraesCS3B01G367900 | chr1A | 512465714 | 512466415 | 701 | False | 911.0 | 911 | 90.510000 | 1585 | 2271 | 1 | chr1A.!!$F1 | 686 |
11 | TraesCS3B01G367900 | chr6A | 535421111 | 535421938 | 827 | True | 457.5 | 599 | 86.683500 | 1053 | 2271 | 2 | chr6A.!!$R1 | 1218 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
23 | 24 | 0.034186 | TCACTTGGGCATGGACCATC | 60.034 | 55.0 | 3.21 | 0.0 | 42.18 | 3.51 | F |
793 | 870 | 0.179145 | CGCGCTCTATATAACCCCCG | 60.179 | 60.0 | 5.56 | 0.0 | 0.00 | 5.73 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1962 | 2097 | 1.053424 | AGAACAGGAACGGCACCTTA | 58.947 | 50.0 | 0.0 | 0.0 | 35.35 | 2.69 | R |
2052 | 2195 | 0.039326 | AGCAGCCTGAATCCTTTGCT | 59.961 | 50.0 | 0.0 | 0.0 | 37.09 | 3.91 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.802792 | CGCATCACTTGGGCATGG | 59.197 | 61.111 | 0.00 | 0.00 | 0.00 | 3.66 |
18 | 19 | 1.750018 | CGCATCACTTGGGCATGGA | 60.750 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
19 | 20 | 1.811860 | GCATCACTTGGGCATGGAC | 59.188 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
20 | 21 | 1.669999 | GCATCACTTGGGCATGGACC | 61.670 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
21 | 22 | 0.323633 | CATCACTTGGGCATGGACCA | 60.324 | 55.000 | 0.00 | 0.00 | 40.08 | 4.02 |
22 | 23 | 0.632835 | ATCACTTGGGCATGGACCAT | 59.367 | 50.000 | 0.00 | 0.00 | 42.18 | 3.55 |
23 | 24 | 0.034186 | TCACTTGGGCATGGACCATC | 60.034 | 55.000 | 3.21 | 0.00 | 42.18 | 3.51 |
24 | 25 | 1.039233 | CACTTGGGCATGGACCATCC | 61.039 | 60.000 | 3.21 | 9.03 | 42.18 | 3.51 |
32 | 33 | 4.100084 | TGGACCATCCAGCTGCCG | 62.100 | 66.667 | 8.66 | 0.00 | 42.67 | 5.69 |
44 | 45 | 3.865383 | CTGCCGCCTGCCAGGATA | 61.865 | 66.667 | 16.85 | 0.00 | 37.67 | 2.59 |
45 | 46 | 4.175337 | TGCCGCCTGCCAGGATAC | 62.175 | 66.667 | 16.85 | 2.38 | 37.67 | 2.24 |
66 | 67 | 9.647797 | GGATACTCTATCGATCGATCTATACAT | 57.352 | 37.037 | 32.50 | 19.11 | 36.03 | 2.29 |
70 | 71 | 9.203421 | ACTCTATCGATCGATCTATACATCATC | 57.797 | 37.037 | 32.50 | 0.00 | 36.17 | 2.92 |
71 | 72 | 8.541133 | TCTATCGATCGATCTATACATCATCC | 57.459 | 38.462 | 32.50 | 0.00 | 36.17 | 3.51 |
72 | 73 | 8.150945 | TCTATCGATCGATCTATACATCATCCA | 58.849 | 37.037 | 32.50 | 10.23 | 36.17 | 3.41 |
73 | 74 | 6.364945 | TCGATCGATCTATACATCATCCAC | 57.635 | 41.667 | 22.43 | 0.00 | 0.00 | 4.02 |
74 | 75 | 6.116126 | TCGATCGATCTATACATCATCCACT | 58.884 | 40.000 | 22.43 | 0.00 | 0.00 | 4.00 |
75 | 76 | 6.037610 | TCGATCGATCTATACATCATCCACTG | 59.962 | 42.308 | 22.43 | 1.70 | 0.00 | 3.66 |
76 | 77 | 5.316327 | TCGATCTATACATCATCCACTGC | 57.684 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
77 | 78 | 4.101235 | CGATCTATACATCATCCACTGCG | 58.899 | 47.826 | 0.00 | 0.00 | 0.00 | 5.18 |
78 | 79 | 4.379918 | CGATCTATACATCATCCACTGCGT | 60.380 | 45.833 | 0.00 | 0.00 | 0.00 | 5.24 |
79 | 80 | 5.163754 | CGATCTATACATCATCCACTGCGTA | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 4.42 |
80 | 81 | 6.590234 | ATCTATACATCATCCACTGCGTAA | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
81 | 82 | 6.399639 | TCTATACATCATCCACTGCGTAAA | 57.600 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
82 | 83 | 6.213677 | TCTATACATCATCCACTGCGTAAAC | 58.786 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
83 | 84 | 3.052455 | ACATCATCCACTGCGTAAACA | 57.948 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
84 | 85 | 3.609853 | ACATCATCCACTGCGTAAACAT | 58.390 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
85 | 86 | 4.009675 | ACATCATCCACTGCGTAAACATT | 58.990 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
86 | 87 | 4.142622 | ACATCATCCACTGCGTAAACATTG | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
87 | 88 | 2.746904 | TCATCCACTGCGTAAACATTGG | 59.253 | 45.455 | 0.00 | 0.00 | 40.71 | 3.16 |
88 | 89 | 2.552599 | TCCACTGCGTAAACATTGGA | 57.447 | 45.000 | 0.00 | 0.00 | 44.46 | 3.53 |
89 | 90 | 3.066291 | TCCACTGCGTAAACATTGGAT | 57.934 | 42.857 | 0.00 | 0.00 | 42.54 | 3.41 |
90 | 91 | 3.417101 | TCCACTGCGTAAACATTGGATT | 58.583 | 40.909 | 0.00 | 0.00 | 42.54 | 3.01 |
91 | 92 | 4.580868 | TCCACTGCGTAAACATTGGATTA | 58.419 | 39.130 | 0.00 | 0.00 | 42.54 | 1.75 |
92 | 93 | 5.189928 | TCCACTGCGTAAACATTGGATTAT | 58.810 | 37.500 | 0.00 | 0.00 | 42.54 | 1.28 |
93 | 94 | 6.350103 | TCCACTGCGTAAACATTGGATTATA | 58.650 | 36.000 | 0.00 | 0.00 | 42.54 | 0.98 |
94 | 95 | 6.259167 | TCCACTGCGTAAACATTGGATTATAC | 59.741 | 38.462 | 0.00 | 0.00 | 42.54 | 1.47 |
95 | 96 | 6.037720 | CCACTGCGTAAACATTGGATTATACA | 59.962 | 38.462 | 0.00 | 0.00 | 41.61 | 2.29 |
96 | 97 | 7.125755 | CACTGCGTAAACATTGGATTATACAG | 58.874 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
97 | 98 | 6.821665 | ACTGCGTAAACATTGGATTATACAGT | 59.178 | 34.615 | 11.90 | 11.90 | 31.54 | 3.55 |
98 | 99 | 7.335924 | ACTGCGTAAACATTGGATTATACAGTT | 59.664 | 33.333 | 11.90 | 0.00 | 31.97 | 3.16 |
99 | 100 | 7.690228 | TGCGTAAACATTGGATTATACAGTTC | 58.310 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
100 | 101 | 6.844279 | GCGTAAACATTGGATTATACAGTTCG | 59.156 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
101 | 102 | 6.844279 | CGTAAACATTGGATTATACAGTTCGC | 59.156 | 38.462 | 0.00 | 0.00 | 0.00 | 4.70 |
102 | 103 | 7.254319 | CGTAAACATTGGATTATACAGTTCGCT | 60.254 | 37.037 | 0.00 | 0.00 | 0.00 | 4.93 |
103 | 104 | 9.037737 | GTAAACATTGGATTATACAGTTCGCTA | 57.962 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
104 | 105 | 7.715265 | AACATTGGATTATACAGTTCGCTAG | 57.285 | 36.000 | 0.00 | 0.00 | 0.00 | 3.42 |
105 | 106 | 6.223852 | ACATTGGATTATACAGTTCGCTAGG | 58.776 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
106 | 107 | 6.041637 | ACATTGGATTATACAGTTCGCTAGGA | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
107 | 108 | 5.707242 | TGGATTATACAGTTCGCTAGGAG | 57.293 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
108 | 109 | 4.022242 | TGGATTATACAGTTCGCTAGGAGC | 60.022 | 45.833 | 0.00 | 0.00 | 38.02 | 4.70 |
109 | 110 | 4.022242 | GGATTATACAGTTCGCTAGGAGCA | 60.022 | 45.833 | 0.00 | 0.00 | 42.58 | 4.26 |
110 | 111 | 2.873133 | ATACAGTTCGCTAGGAGCAC | 57.127 | 50.000 | 0.00 | 0.00 | 42.58 | 4.40 |
111 | 112 | 1.835494 | TACAGTTCGCTAGGAGCACT | 58.165 | 50.000 | 0.00 | 0.00 | 42.58 | 4.40 |
112 | 113 | 1.835494 | ACAGTTCGCTAGGAGCACTA | 58.165 | 50.000 | 0.00 | 0.00 | 42.58 | 2.74 |
113 | 114 | 2.379972 | ACAGTTCGCTAGGAGCACTAT | 58.620 | 47.619 | 0.00 | 0.00 | 42.58 | 2.12 |
114 | 115 | 2.761208 | ACAGTTCGCTAGGAGCACTATT | 59.239 | 45.455 | 0.00 | 0.00 | 42.58 | 1.73 |
115 | 116 | 3.952323 | ACAGTTCGCTAGGAGCACTATTA | 59.048 | 43.478 | 0.00 | 0.00 | 42.58 | 0.98 |
116 | 117 | 4.585162 | ACAGTTCGCTAGGAGCACTATTAT | 59.415 | 41.667 | 0.00 | 0.00 | 42.58 | 1.28 |
117 | 118 | 5.768662 | ACAGTTCGCTAGGAGCACTATTATA | 59.231 | 40.000 | 0.00 | 0.00 | 42.58 | 0.98 |
118 | 119 | 6.072397 | ACAGTTCGCTAGGAGCACTATTATAG | 60.072 | 42.308 | 0.00 | 0.00 | 42.58 | 1.31 |
119 | 120 | 6.005198 | AGTTCGCTAGGAGCACTATTATAGT | 58.995 | 40.000 | 0.00 | 0.00 | 42.58 | 2.12 |
120 | 121 | 6.149807 | AGTTCGCTAGGAGCACTATTATAGTC | 59.850 | 42.308 | 1.33 | 0.00 | 42.58 | 2.59 |
121 | 122 | 4.942483 | TCGCTAGGAGCACTATTATAGTCC | 59.058 | 45.833 | 1.33 | 1.50 | 42.58 | 3.85 |
122 | 123 | 4.944930 | CGCTAGGAGCACTATTATAGTCCT | 59.055 | 45.833 | 13.38 | 13.38 | 42.58 | 3.85 |
123 | 124 | 5.416326 | CGCTAGGAGCACTATTATAGTCCTT | 59.584 | 44.000 | 13.89 | 2.56 | 42.58 | 3.36 |
124 | 125 | 6.403855 | CGCTAGGAGCACTATTATAGTCCTTC | 60.404 | 46.154 | 13.89 | 5.18 | 42.58 | 3.46 |
125 | 126 | 6.127563 | GCTAGGAGCACTATTATAGTCCTTCC | 60.128 | 46.154 | 13.89 | 13.88 | 41.89 | 3.46 |
126 | 127 | 4.767928 | AGGAGCACTATTATAGTCCTTCCG | 59.232 | 45.833 | 1.33 | 0.00 | 36.76 | 4.30 |
127 | 128 | 4.523558 | GGAGCACTATTATAGTCCTTCCGT | 59.476 | 45.833 | 1.33 | 0.00 | 36.76 | 4.69 |
128 | 129 | 5.335819 | GGAGCACTATTATAGTCCTTCCGTC | 60.336 | 48.000 | 1.33 | 0.00 | 36.76 | 4.79 |
129 | 130 | 4.523558 | AGCACTATTATAGTCCTTCCGTCC | 59.476 | 45.833 | 1.33 | 0.00 | 36.76 | 4.79 |
130 | 131 | 4.615452 | GCACTATTATAGTCCTTCCGTCCG | 60.615 | 50.000 | 1.33 | 0.00 | 36.76 | 4.79 |
131 | 132 | 4.758674 | CACTATTATAGTCCTTCCGTCCGA | 59.241 | 45.833 | 1.33 | 0.00 | 36.76 | 4.55 |
132 | 133 | 5.240183 | CACTATTATAGTCCTTCCGTCCGAA | 59.760 | 44.000 | 1.33 | 0.00 | 36.76 | 4.30 |
133 | 134 | 5.829924 | ACTATTATAGTCCTTCCGTCCGAAA | 59.170 | 40.000 | 0.00 | 0.00 | 32.47 | 3.46 |
134 | 135 | 5.603170 | ATTATAGTCCTTCCGTCCGAAAA | 57.397 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
135 | 136 | 5.603170 | TTATAGTCCTTCCGTCCGAAAAT | 57.397 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
136 | 137 | 6.713762 | TTATAGTCCTTCCGTCCGAAAATA | 57.286 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
137 | 138 | 3.242549 | AGTCCTTCCGTCCGAAAATAC | 57.757 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
138 | 139 | 2.830321 | AGTCCTTCCGTCCGAAAATACT | 59.170 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
139 | 140 | 3.260128 | AGTCCTTCCGTCCGAAAATACTT | 59.740 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
140 | 141 | 3.370061 | GTCCTTCCGTCCGAAAATACTTG | 59.630 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
141 | 142 | 3.007182 | TCCTTCCGTCCGAAAATACTTGT | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
142 | 143 | 3.370061 | CCTTCCGTCCGAAAATACTTGTC | 59.630 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
143 | 144 | 3.663995 | TCCGTCCGAAAATACTTGTCA | 57.336 | 42.857 | 0.00 | 0.00 | 0.00 | 3.58 |
144 | 145 | 4.196626 | TCCGTCCGAAAATACTTGTCAT | 57.803 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
145 | 146 | 4.178540 | TCCGTCCGAAAATACTTGTCATC | 58.821 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
146 | 147 | 3.930229 | CCGTCCGAAAATACTTGTCATCA | 59.070 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
147 | 148 | 4.390603 | CCGTCCGAAAATACTTGTCATCAA | 59.609 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
148 | 149 | 5.106869 | CCGTCCGAAAATACTTGTCATCAAA | 60.107 | 40.000 | 0.00 | 0.00 | 32.87 | 2.69 |
149 | 150 | 6.367421 | CGTCCGAAAATACTTGTCATCAAAA | 58.633 | 36.000 | 0.00 | 0.00 | 32.87 | 2.44 |
150 | 151 | 7.021196 | CGTCCGAAAATACTTGTCATCAAAAT | 58.979 | 34.615 | 0.00 | 0.00 | 32.87 | 1.82 |
151 | 152 | 7.007367 | CGTCCGAAAATACTTGTCATCAAAATG | 59.993 | 37.037 | 0.00 | 0.00 | 32.87 | 2.32 |
152 | 153 | 7.273381 | GTCCGAAAATACTTGTCATCAAAATGG | 59.727 | 37.037 | 0.00 | 0.00 | 33.42 | 3.16 |
153 | 154 | 7.175816 | TCCGAAAATACTTGTCATCAAAATGGA | 59.824 | 33.333 | 0.00 | 0.00 | 33.42 | 3.41 |
154 | 155 | 7.273381 | CCGAAAATACTTGTCATCAAAATGGAC | 59.727 | 37.037 | 0.00 | 0.00 | 33.42 | 4.02 |
155 | 156 | 7.807433 | CGAAAATACTTGTCATCAAAATGGACA | 59.193 | 33.333 | 0.00 | 0.00 | 33.42 | 4.02 |
156 | 157 | 9.474920 | GAAAATACTTGTCATCAAAATGGACAA | 57.525 | 29.630 | 0.00 | 0.00 | 34.59 | 3.18 |
157 | 158 | 9.829507 | AAAATACTTGTCATCAAAATGGACAAA | 57.170 | 25.926 | 7.70 | 0.00 | 34.98 | 2.83 |
158 | 159 | 9.829507 | AAATACTTGTCATCAAAATGGACAAAA | 57.170 | 25.926 | 7.70 | 0.84 | 34.98 | 2.44 |
159 | 160 | 9.829507 | AATACTTGTCATCAAAATGGACAAAAA | 57.170 | 25.926 | 7.70 | 0.55 | 34.98 | 1.94 |
160 | 161 | 7.775397 | ACTTGTCATCAAAATGGACAAAAAG | 57.225 | 32.000 | 7.70 | 0.11 | 34.98 | 2.27 |
161 | 162 | 7.555087 | ACTTGTCATCAAAATGGACAAAAAGA | 58.445 | 30.769 | 7.70 | 0.00 | 34.98 | 2.52 |
162 | 163 | 8.040132 | ACTTGTCATCAAAATGGACAAAAAGAA | 58.960 | 29.630 | 7.70 | 0.00 | 34.98 | 2.52 |
163 | 164 | 8.961294 | TTGTCATCAAAATGGACAAAAAGAAT | 57.039 | 26.923 | 4.15 | 0.00 | 33.71 | 2.40 |
164 | 165 | 8.367943 | TGTCATCAAAATGGACAAAAAGAATG | 57.632 | 30.769 | 0.00 | 0.00 | 33.42 | 2.67 |
165 | 166 | 7.986320 | TGTCATCAAAATGGACAAAAAGAATGT | 59.014 | 29.630 | 0.00 | 0.00 | 33.42 | 2.71 |
166 | 167 | 9.474920 | GTCATCAAAATGGACAAAAAGAATGTA | 57.525 | 29.630 | 0.00 | 0.00 | 33.42 | 2.29 |
192 | 193 | 8.650143 | TCTTAATTAATTTTGGCTCCAAGAGT | 57.350 | 30.769 | 5.91 | 0.00 | 37.24 | 3.24 |
262 | 263 | 4.078516 | GGGTCGCGTTGCCTACCT | 62.079 | 66.667 | 5.77 | 0.00 | 33.36 | 3.08 |
263 | 264 | 2.813908 | GGTCGCGTTGCCTACCTG | 60.814 | 66.667 | 5.77 | 0.00 | 31.11 | 4.00 |
264 | 265 | 2.048503 | GTCGCGTTGCCTACCTGT | 60.049 | 61.111 | 5.77 | 0.00 | 0.00 | 4.00 |
265 | 266 | 2.048597 | TCGCGTTGCCTACCTGTG | 60.049 | 61.111 | 5.77 | 0.00 | 0.00 | 3.66 |
266 | 267 | 2.357034 | CGCGTTGCCTACCTGTGT | 60.357 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
267 | 268 | 2.380410 | CGCGTTGCCTACCTGTGTC | 61.380 | 63.158 | 0.00 | 0.00 | 0.00 | 3.67 |
289 | 295 | 4.435970 | TGCCCTCCCGCGTCTCTA | 62.436 | 66.667 | 4.92 | 0.00 | 0.00 | 2.43 |
363 | 393 | 3.200593 | CATGAGCTGGCTGCCGTC | 61.201 | 66.667 | 14.98 | 11.08 | 44.23 | 4.79 |
418 | 454 | 1.648467 | GCTCTGGTGGCCGTGAAATC | 61.648 | 60.000 | 0.00 | 0.00 | 0.00 | 2.17 |
424 | 460 | 0.730265 | GTGGCCGTGAAATCGCATAA | 59.270 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
439 | 475 | 1.198867 | GCATAAACCACATGACACGCA | 59.801 | 47.619 | 0.00 | 0.00 | 0.00 | 5.24 |
458 | 494 | 2.605338 | GCATGCAGAGTGAAGCGAAAAA | 60.605 | 45.455 | 14.21 | 0.00 | 0.00 | 1.94 |
459 | 495 | 3.231965 | CATGCAGAGTGAAGCGAAAAAG | 58.768 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
460 | 496 | 2.288666 | TGCAGAGTGAAGCGAAAAAGT | 58.711 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
484 | 529 | 5.755375 | TGTGTGTGTGTGACAATTTTTGTTT | 59.245 | 32.000 | 0.00 | 0.00 | 45.52 | 2.83 |
488 | 533 | 5.866633 | TGTGTGTGACAATTTTTGTTTCTCC | 59.133 | 36.000 | 0.00 | 0.00 | 45.52 | 3.71 |
489 | 534 | 5.866633 | GTGTGTGACAATTTTTGTTTCTCCA | 59.133 | 36.000 | 0.00 | 0.00 | 45.52 | 3.86 |
490 | 535 | 6.534793 | GTGTGTGACAATTTTTGTTTCTCCAT | 59.465 | 34.615 | 0.00 | 0.00 | 45.52 | 3.41 |
492 | 537 | 5.523188 | TGTGACAATTTTTGTTTCTCCATGC | 59.477 | 36.000 | 0.00 | 0.00 | 45.52 | 4.06 |
494 | 539 | 4.942852 | ACAATTTTTGTTTCTCCATGCGA | 58.057 | 34.783 | 0.00 | 0.00 | 42.22 | 5.10 |
495 | 540 | 5.540911 | ACAATTTTTGTTTCTCCATGCGAT | 58.459 | 33.333 | 0.00 | 0.00 | 42.22 | 4.58 |
496 | 541 | 5.406175 | ACAATTTTTGTTTCTCCATGCGATG | 59.594 | 36.000 | 0.00 | 0.00 | 42.22 | 3.84 |
497 | 542 | 2.634982 | TTTGTTTCTCCATGCGATGC | 57.365 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
503 | 554 | 2.962827 | CTCCATGCGATGCGATGCC | 61.963 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
517 | 568 | 3.286694 | ATGCCATGCGTGTCCCCTT | 62.287 | 57.895 | 4.96 | 0.00 | 0.00 | 3.95 |
527 | 578 | 1.067071 | CGTGTCCCCTTGAACTACTCC | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
528 | 579 | 1.975680 | GTGTCCCCTTGAACTACTCCA | 59.024 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
529 | 580 | 2.028020 | GTGTCCCCTTGAACTACTCCAG | 60.028 | 54.545 | 0.00 | 0.00 | 0.00 | 3.86 |
581 | 636 | 3.808466 | TGCATTAACGAGCAGAGATCT | 57.192 | 42.857 | 0.00 | 0.00 | 35.51 | 2.75 |
591 | 646 | 0.734253 | GCAGAGATCTGTGTTCGCGT | 60.734 | 55.000 | 20.02 | 0.00 | 45.45 | 6.01 |
626 | 681 | 1.813753 | CTTGCCTTGCCATGCATGC | 60.814 | 57.895 | 21.69 | 11.82 | 38.76 | 4.06 |
627 | 682 | 3.650907 | TTGCCTTGCCATGCATGCG | 62.651 | 57.895 | 21.69 | 15.04 | 38.76 | 4.73 |
628 | 683 | 4.884257 | GCCTTGCCATGCATGCGG | 62.884 | 66.667 | 21.69 | 17.34 | 38.76 | 5.69 |
629 | 684 | 3.142162 | CCTTGCCATGCATGCGGA | 61.142 | 61.111 | 21.69 | 12.74 | 38.76 | 5.54 |
630 | 685 | 2.103538 | CTTGCCATGCATGCGGAC | 59.896 | 61.111 | 21.69 | 10.31 | 38.76 | 4.79 |
673 | 728 | 1.107945 | ACACCTTTGTTTCCCCGTTG | 58.892 | 50.000 | 0.00 | 0.00 | 28.43 | 4.10 |
732 | 788 | 3.411351 | CACGCGGTTTCCAGGACG | 61.411 | 66.667 | 12.47 | 0.00 | 0.00 | 4.79 |
745 | 808 | 3.839432 | GGACGCTCCCTCCTTCGG | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
749 | 812 | 3.394836 | GCTCCCTCCTTCGGCAGT | 61.395 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
793 | 870 | 0.179145 | CGCGCTCTATATAACCCCCG | 60.179 | 60.000 | 5.56 | 0.00 | 0.00 | 5.73 |
819 | 897 | 4.851214 | GCCCTCCCCGCTCTCTCT | 62.851 | 72.222 | 0.00 | 0.00 | 0.00 | 3.10 |
823 | 901 | 3.347590 | TCCCCGCTCTCTCTCCCA | 61.348 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
824 | 902 | 2.123077 | CCCCGCTCTCTCTCCCAT | 60.123 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
849 | 927 | 4.039357 | ACCTCCTCGCACGTCACG | 62.039 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
857 | 935 | 2.126424 | GCACGTCACGTCCCTCTC | 60.126 | 66.667 | 0.00 | 0.00 | 38.32 | 3.20 |
865 | 943 | 1.931705 | ACGTCCCTCTCCTCCTCCT | 60.932 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
866 | 944 | 1.152839 | CGTCCCTCTCCTCCTCCTC | 60.153 | 68.421 | 0.00 | 0.00 | 0.00 | 3.71 |
869 | 947 | 2.612251 | CCTCTCCTCCTCCTCCCC | 59.388 | 72.222 | 0.00 | 0.00 | 0.00 | 4.81 |
877 | 955 | 2.444895 | CCTCCTCCCCCTCCTTCG | 60.445 | 72.222 | 0.00 | 0.00 | 0.00 | 3.79 |
880 | 958 | 2.764547 | CCTCCCCCTCCTTCGTCC | 60.765 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
881 | 959 | 2.038975 | CTCCCCCTCCTTCGTCCA | 59.961 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
889 | 967 | 0.320771 | CTCCTTCGTCCACCACAAGG | 60.321 | 60.000 | 0.00 | 0.00 | 42.21 | 3.61 |
967 | 1052 | 3.818787 | GCGTCGCCGTCTTCCCTA | 61.819 | 66.667 | 5.75 | 0.00 | 36.15 | 3.53 |
977 | 1062 | 1.530891 | TCTTCCCTATCTCCGGCCG | 60.531 | 63.158 | 21.04 | 21.04 | 0.00 | 6.13 |
995 | 1089 | 3.553922 | GGCCGGATTTGTTTGTCAATTGA | 60.554 | 43.478 | 5.05 | 3.38 | 35.84 | 2.57 |
1000 | 1094 | 7.312154 | CCGGATTTGTTTGTCAATTGAGAATA | 58.688 | 34.615 | 17.76 | 8.43 | 35.84 | 1.75 |
1001 | 1095 | 7.975616 | CCGGATTTGTTTGTCAATTGAGAATAT | 59.024 | 33.333 | 17.76 | 9.72 | 35.84 | 1.28 |
1008 | 1102 | 6.757897 | TTGTCAATTGAGAATATGGTGACC | 57.242 | 37.500 | 13.63 | 0.00 | 34.40 | 4.02 |
1009 | 1103 | 5.814481 | TGTCAATTGAGAATATGGTGACCA | 58.186 | 37.500 | 6.84 | 6.84 | 38.19 | 4.02 |
1010 | 1104 | 5.882000 | TGTCAATTGAGAATATGGTGACCAG | 59.118 | 40.000 | 11.23 | 0.00 | 36.75 | 4.00 |
1012 | 1106 | 6.375455 | GTCAATTGAGAATATGGTGACCAGTT | 59.625 | 38.462 | 11.23 | 7.64 | 36.75 | 3.16 |
1013 | 1107 | 6.599244 | TCAATTGAGAATATGGTGACCAGTTC | 59.401 | 38.462 | 19.15 | 19.15 | 36.75 | 3.01 |
1014 | 1108 | 5.762179 | TTGAGAATATGGTGACCAGTTCT | 57.238 | 39.130 | 25.70 | 25.70 | 41.68 | 3.01 |
1015 | 1109 | 5.089970 | TGAGAATATGGTGACCAGTTCTG | 57.910 | 43.478 | 28.65 | 0.00 | 40.23 | 3.02 |
1016 | 1110 | 4.080919 | TGAGAATATGGTGACCAGTTCTGG | 60.081 | 45.833 | 28.65 | 16.25 | 40.23 | 3.86 |
1017 | 1111 | 4.104086 | AGAATATGGTGACCAGTTCTGGA | 58.896 | 43.478 | 25.14 | 3.02 | 39.37 | 3.86 |
1018 | 1112 | 4.536090 | AGAATATGGTGACCAGTTCTGGAA | 59.464 | 41.667 | 25.14 | 9.76 | 39.37 | 3.53 |
1020 | 1114 | 2.566833 | TGGTGACCAGTTCTGGAATG | 57.433 | 50.000 | 23.45 | 0.00 | 0.00 | 2.67 |
1029 | 1135 | 3.129287 | CCAGTTCTGGAATGTACCAATGC | 59.871 | 47.826 | 13.02 | 0.00 | 39.59 | 3.56 |
1040 | 1146 | 4.285807 | TGTACCAATGCGCATCAATTAC | 57.714 | 40.909 | 25.53 | 20.55 | 0.00 | 1.89 |
1063 | 1169 | 3.785189 | GACAGTGTGGCACGGACGT | 62.785 | 63.158 | 13.77 | 7.31 | 39.64 | 4.34 |
1275 | 1399 | 2.730094 | CAAAACAAGCCGCAGCCT | 59.270 | 55.556 | 0.00 | 0.00 | 41.25 | 4.58 |
1287 | 1411 | 2.809601 | CAGCCTGGCACGTACGTC | 60.810 | 66.667 | 19.94 | 13.15 | 0.00 | 4.34 |
1320 | 1444 | 0.896940 | AGGACAAGGTCTTCCGCGTA | 60.897 | 55.000 | 4.92 | 0.00 | 36.95 | 4.42 |
1962 | 2097 | 2.915659 | TCCAGGTCCTGCGACGTT | 60.916 | 61.111 | 13.99 | 0.00 | 40.17 | 3.99 |
2000 | 2140 | 1.218316 | GGAGGAACTGACGCCGAAT | 59.782 | 57.895 | 0.00 | 0.00 | 41.55 | 3.34 |
2065 | 2212 | 2.681848 | CAGGTAGCAGCAAAGGATTCAG | 59.318 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2117 | 2265 | 9.566530 | CGATTAATTTGTATGTTGGTTTGATCA | 57.433 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
2399 | 2564 | 9.932207 | TTCTGAATATGAAATGCATGAACTTTT | 57.068 | 25.926 | 0.00 | 0.00 | 37.87 | 2.27 |
2513 | 2683 | 4.503741 | AGTCCCATGACAAAATTGAACG | 57.496 | 40.909 | 0.00 | 0.00 | 44.33 | 3.95 |
2524 | 2694 | 2.774439 | AATTGAACGTTCAGCACCAC | 57.226 | 45.000 | 28.21 | 1.72 | 38.61 | 4.16 |
2557 | 2727 | 1.950954 | GCTTGTTAGTCCAGGGGAAGC | 60.951 | 57.143 | 0.00 | 0.00 | 31.38 | 3.86 |
2559 | 2729 | 0.984230 | TGTTAGTCCAGGGGAAGCAG | 59.016 | 55.000 | 0.00 | 0.00 | 31.38 | 4.24 |
2567 | 2737 | 0.600057 | CAGGGGAAGCAGCTCAAAAC | 59.400 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2588 | 2758 | 8.773645 | CAAAACTCTGTGTAGACATGAACATAA | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
2598 | 2768 | 6.149129 | AGACATGAACATAATCAGCTCGTA | 57.851 | 37.500 | 0.00 | 0.00 | 31.76 | 3.43 |
2601 | 2771 | 6.106003 | ACATGAACATAATCAGCTCGTACAA | 58.894 | 36.000 | 0.00 | 0.00 | 31.76 | 2.41 |
2603 | 2773 | 5.109210 | TGAACATAATCAGCTCGTACAAGG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
2655 | 2835 | 7.495606 | TGAACAAATCAGCTCGTACATATGATT | 59.504 | 33.333 | 10.38 | 6.72 | 41.18 | 2.57 |
2670 | 2850 | 6.653020 | ACATATGATTAGACTTGCAGGTCAA | 58.347 | 36.000 | 28.25 | 19.98 | 38.57 | 3.18 |
2673 | 2853 | 5.885230 | TGATTAGACTTGCAGGTCAAATG | 57.115 | 39.130 | 28.25 | 0.00 | 38.57 | 2.32 |
2746 | 2927 | 7.011109 | AGTGGTTTCGAATACATATTAGTGTGC | 59.989 | 37.037 | 0.00 | 0.00 | 33.62 | 4.57 |
2753 | 2934 | 6.564709 | AATACATATTAGTGTGCATGCCAG | 57.435 | 37.500 | 16.68 | 1.99 | 33.62 | 4.85 |
2758 | 2939 | 6.429078 | ACATATTAGTGTGCATGCCAGATTAG | 59.571 | 38.462 | 16.68 | 0.00 | 0.00 | 1.73 |
2835 | 3016 | 2.484594 | GGATAGAGCCTGTTCTTCTGCC | 60.485 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
2846 | 3027 | 3.188460 | TGTTCTTCTGCCGTTATCTTTGC | 59.812 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
2867 | 3048 | 2.350772 | CCGTCTGGTCAATGCTGAAAAC | 60.351 | 50.000 | 0.00 | 0.00 | 31.88 | 2.43 |
2901 | 3082 | 1.544691 | CCCAGCGACTAAGTGTAGTGT | 59.455 | 52.381 | 0.00 | 0.00 | 40.82 | 3.55 |
2903 | 3084 | 2.415625 | CCAGCGACTAAGTGTAGTGTCC | 60.416 | 54.545 | 0.00 | 0.00 | 40.82 | 4.02 |
2934 | 3115 | 1.862602 | GCCGGCCGAACATGAAAACT | 61.863 | 55.000 | 30.73 | 0.00 | 0.00 | 2.66 |
2960 | 3141 | 6.680874 | ATCAGAGAAATTGTCAGAATCTGC | 57.319 | 37.500 | 5.18 | 1.65 | 34.18 | 4.26 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.750018 | TCCATGCCCAAGTGATGCG | 60.750 | 57.895 | 0.00 | 0.00 | 0.00 | 4.73 |
1 | 2 | 1.669999 | GGTCCATGCCCAAGTGATGC | 61.670 | 60.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2 | 3 | 0.323633 | TGGTCCATGCCCAAGTGATG | 60.324 | 55.000 | 0.16 | 0.00 | 0.00 | 3.07 |
3 | 4 | 0.632835 | ATGGTCCATGCCCAAGTGAT | 59.367 | 50.000 | 2.68 | 0.00 | 35.14 | 3.06 |
6 | 7 | 1.307647 | GGATGGTCCATGCCCAAGT | 59.692 | 57.895 | 9.76 | 0.00 | 36.28 | 3.16 |
7 | 8 | 1.307309 | TGGATGGTCCATGCCCAAG | 59.693 | 57.895 | 19.72 | 0.00 | 42.67 | 3.61 |
8 | 9 | 3.518035 | TGGATGGTCCATGCCCAA | 58.482 | 55.556 | 19.72 | 0.00 | 42.67 | 4.12 |
15 | 16 | 4.100084 | CGGCAGCTGGATGGTCCA | 62.100 | 66.667 | 17.12 | 0.00 | 45.98 | 4.02 |
29 | 30 | 3.816367 | GAGTATCCTGGCAGGCGGC | 62.816 | 68.421 | 29.02 | 18.87 | 43.74 | 6.53 |
30 | 31 | 0.827925 | TAGAGTATCCTGGCAGGCGG | 60.828 | 60.000 | 29.02 | 6.82 | 34.61 | 6.13 |
31 | 32 | 1.203523 | GATAGAGTATCCTGGCAGGCG | 59.796 | 57.143 | 29.02 | 6.54 | 34.61 | 5.52 |
32 | 33 | 1.203523 | CGATAGAGTATCCTGGCAGGC | 59.796 | 57.143 | 29.02 | 14.98 | 34.10 | 4.85 |
33 | 34 | 2.796557 | TCGATAGAGTATCCTGGCAGG | 58.203 | 52.381 | 28.01 | 28.01 | 42.67 | 4.85 |
47 | 48 | 8.227119 | GTGGATGATGTATAGATCGATCGATAG | 58.773 | 40.741 | 29.45 | 0.00 | 34.60 | 2.08 |
48 | 49 | 7.934120 | AGTGGATGATGTATAGATCGATCGATA | 59.066 | 37.037 | 29.45 | 20.31 | 34.60 | 2.92 |
49 | 50 | 6.770303 | AGTGGATGATGTATAGATCGATCGAT | 59.230 | 38.462 | 29.76 | 29.76 | 37.59 | 3.59 |
50 | 51 | 6.037610 | CAGTGGATGATGTATAGATCGATCGA | 59.962 | 42.308 | 21.86 | 21.86 | 0.00 | 3.59 |
51 | 52 | 6.197981 | CAGTGGATGATGTATAGATCGATCG | 58.802 | 44.000 | 19.33 | 9.36 | 0.00 | 3.69 |
52 | 53 | 5.976534 | GCAGTGGATGATGTATAGATCGATC | 59.023 | 44.000 | 17.91 | 17.91 | 0.00 | 3.69 |
53 | 54 | 5.449725 | CGCAGTGGATGATGTATAGATCGAT | 60.450 | 44.000 | 0.00 | 0.00 | 0.00 | 3.59 |
54 | 55 | 4.142600 | CGCAGTGGATGATGTATAGATCGA | 60.143 | 45.833 | 5.48 | 0.00 | 0.00 | 3.59 |
55 | 56 | 4.101235 | CGCAGTGGATGATGTATAGATCG | 58.899 | 47.826 | 5.48 | 0.00 | 0.00 | 3.69 |
56 | 57 | 5.065704 | ACGCAGTGGATGATGTATAGATC | 57.934 | 43.478 | 2.91 | 2.91 | 42.51 | 2.75 |
57 | 58 | 6.590234 | TTACGCAGTGGATGATGTATAGAT | 57.410 | 37.500 | 0.00 | 0.00 | 45.73 | 1.98 |
58 | 59 | 6.183360 | TGTTTACGCAGTGGATGATGTATAGA | 60.183 | 38.462 | 0.00 | 0.00 | 45.73 | 1.98 |
59 | 60 | 5.983118 | TGTTTACGCAGTGGATGATGTATAG | 59.017 | 40.000 | 0.00 | 0.00 | 45.73 | 1.31 |
60 | 61 | 5.908341 | TGTTTACGCAGTGGATGATGTATA | 58.092 | 37.500 | 0.00 | 0.00 | 45.73 | 1.47 |
61 | 62 | 4.765273 | TGTTTACGCAGTGGATGATGTAT | 58.235 | 39.130 | 0.00 | 0.00 | 45.73 | 2.29 |
62 | 63 | 4.195225 | TGTTTACGCAGTGGATGATGTA | 57.805 | 40.909 | 0.00 | 0.00 | 45.73 | 2.29 |
63 | 64 | 3.052455 | TGTTTACGCAGTGGATGATGT | 57.948 | 42.857 | 0.00 | 0.00 | 45.73 | 3.06 |
64 | 65 | 4.345288 | CAATGTTTACGCAGTGGATGATG | 58.655 | 43.478 | 0.00 | 0.00 | 45.73 | 3.07 |
65 | 66 | 4.621068 | CAATGTTTACGCAGTGGATGAT | 57.379 | 40.909 | 0.00 | 0.00 | 45.73 | 2.45 |
71 | 72 | 7.010697 | TGTATAATCCAATGTTTACGCAGTG | 57.989 | 36.000 | 0.00 | 0.00 | 45.73 | 3.66 |
73 | 74 | 7.246674 | ACTGTATAATCCAATGTTTACGCAG | 57.753 | 36.000 | 0.00 | 0.00 | 0.00 | 5.18 |
74 | 75 | 7.464844 | CGAACTGTATAATCCAATGTTTACGCA | 60.465 | 37.037 | 0.00 | 0.00 | 0.00 | 5.24 |
75 | 76 | 6.844279 | CGAACTGTATAATCCAATGTTTACGC | 59.156 | 38.462 | 0.00 | 0.00 | 0.00 | 4.42 |
76 | 77 | 6.844279 | GCGAACTGTATAATCCAATGTTTACG | 59.156 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
77 | 78 | 7.916552 | AGCGAACTGTATAATCCAATGTTTAC | 58.083 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
78 | 79 | 9.256477 | CTAGCGAACTGTATAATCCAATGTTTA | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
79 | 80 | 7.226720 | CCTAGCGAACTGTATAATCCAATGTTT | 59.773 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
80 | 81 | 6.706270 | CCTAGCGAACTGTATAATCCAATGTT | 59.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
81 | 82 | 6.041637 | TCCTAGCGAACTGTATAATCCAATGT | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
82 | 83 | 6.455647 | TCCTAGCGAACTGTATAATCCAATG | 58.544 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
83 | 84 | 6.665992 | TCCTAGCGAACTGTATAATCCAAT | 57.334 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
84 | 85 | 5.509163 | GCTCCTAGCGAACTGTATAATCCAA | 60.509 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
85 | 86 | 4.022242 | GCTCCTAGCGAACTGTATAATCCA | 60.022 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
86 | 87 | 4.022242 | TGCTCCTAGCGAACTGTATAATCC | 60.022 | 45.833 | 0.00 | 0.00 | 46.26 | 3.01 |
87 | 88 | 4.918583 | GTGCTCCTAGCGAACTGTATAATC | 59.081 | 45.833 | 0.00 | 0.00 | 46.26 | 1.75 |
88 | 89 | 4.585162 | AGTGCTCCTAGCGAACTGTATAAT | 59.415 | 41.667 | 0.00 | 0.00 | 46.26 | 1.28 |
89 | 90 | 3.952323 | AGTGCTCCTAGCGAACTGTATAA | 59.048 | 43.478 | 0.00 | 0.00 | 46.26 | 0.98 |
90 | 91 | 3.552875 | AGTGCTCCTAGCGAACTGTATA | 58.447 | 45.455 | 0.00 | 0.00 | 46.26 | 1.47 |
91 | 92 | 2.379972 | AGTGCTCCTAGCGAACTGTAT | 58.620 | 47.619 | 0.00 | 0.00 | 46.26 | 2.29 |
92 | 93 | 1.835494 | AGTGCTCCTAGCGAACTGTA | 58.165 | 50.000 | 0.00 | 0.00 | 46.26 | 2.74 |
93 | 94 | 1.835494 | TAGTGCTCCTAGCGAACTGT | 58.165 | 50.000 | 3.01 | 0.00 | 46.26 | 3.55 |
94 | 95 | 3.444703 | AATAGTGCTCCTAGCGAACTG | 57.555 | 47.619 | 3.01 | 0.00 | 46.26 | 3.16 |
95 | 96 | 6.005198 | ACTATAATAGTGCTCCTAGCGAACT | 58.995 | 40.000 | 0.00 | 0.00 | 46.26 | 3.01 |
96 | 97 | 6.256912 | ACTATAATAGTGCTCCTAGCGAAC | 57.743 | 41.667 | 0.00 | 0.00 | 46.26 | 3.95 |
97 | 98 | 5.415077 | GGACTATAATAGTGCTCCTAGCGAA | 59.585 | 44.000 | 0.00 | 0.00 | 46.26 | 4.70 |
98 | 99 | 4.942483 | GGACTATAATAGTGCTCCTAGCGA | 59.058 | 45.833 | 0.00 | 0.00 | 46.26 | 4.93 |
99 | 100 | 5.238006 | GGACTATAATAGTGCTCCTAGCG | 57.762 | 47.826 | 0.00 | 0.00 | 46.26 | 4.26 |
107 | 108 | 4.615452 | CGGACGGAAGGACTATAATAGTGC | 60.615 | 50.000 | 0.00 | 0.00 | 46.12 | 4.40 |
108 | 109 | 4.758674 | TCGGACGGAAGGACTATAATAGTG | 59.241 | 45.833 | 0.00 | 0.00 | 39.59 | 2.74 |
109 | 110 | 4.978099 | TCGGACGGAAGGACTATAATAGT | 58.022 | 43.478 | 0.00 | 0.00 | 42.86 | 2.12 |
110 | 111 | 5.954296 | TTCGGACGGAAGGACTATAATAG | 57.046 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
111 | 112 | 6.713762 | TTTTCGGACGGAAGGACTATAATA | 57.286 | 37.500 | 0.00 | 0.00 | 35.70 | 0.98 |
112 | 113 | 5.603170 | TTTTCGGACGGAAGGACTATAAT | 57.397 | 39.130 | 0.00 | 0.00 | 35.70 | 1.28 |
113 | 114 | 5.603170 | ATTTTCGGACGGAAGGACTATAA | 57.397 | 39.130 | 0.00 | 0.00 | 35.70 | 0.98 |
114 | 115 | 5.829924 | AGTATTTTCGGACGGAAGGACTATA | 59.170 | 40.000 | 1.24 | 0.00 | 35.70 | 1.31 |
115 | 116 | 4.648307 | AGTATTTTCGGACGGAAGGACTAT | 59.352 | 41.667 | 1.24 | 0.00 | 35.70 | 2.12 |
116 | 117 | 4.019174 | AGTATTTTCGGACGGAAGGACTA | 58.981 | 43.478 | 1.24 | 0.00 | 35.70 | 2.59 |
117 | 118 | 2.830321 | AGTATTTTCGGACGGAAGGACT | 59.170 | 45.455 | 0.00 | 0.00 | 35.70 | 3.85 |
118 | 119 | 3.242549 | AGTATTTTCGGACGGAAGGAC | 57.757 | 47.619 | 0.00 | 0.00 | 35.70 | 3.85 |
119 | 120 | 3.007182 | ACAAGTATTTTCGGACGGAAGGA | 59.993 | 43.478 | 0.00 | 0.00 | 35.70 | 3.36 |
120 | 121 | 3.332034 | ACAAGTATTTTCGGACGGAAGG | 58.668 | 45.455 | 0.00 | 0.00 | 35.70 | 3.46 |
121 | 122 | 3.991773 | TGACAAGTATTTTCGGACGGAAG | 59.008 | 43.478 | 0.00 | 0.00 | 35.70 | 3.46 |
122 | 123 | 3.992643 | TGACAAGTATTTTCGGACGGAA | 58.007 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
123 | 124 | 3.663995 | TGACAAGTATTTTCGGACGGA | 57.336 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
124 | 125 | 3.930229 | TGATGACAAGTATTTTCGGACGG | 59.070 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
125 | 126 | 5.524511 | TTGATGACAAGTATTTTCGGACG | 57.475 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
126 | 127 | 7.273381 | CCATTTTGATGACAAGTATTTTCGGAC | 59.727 | 37.037 | 0.00 | 0.00 | 37.32 | 4.79 |
127 | 128 | 7.175816 | TCCATTTTGATGACAAGTATTTTCGGA | 59.824 | 33.333 | 0.00 | 0.00 | 37.32 | 4.55 |
128 | 129 | 7.273381 | GTCCATTTTGATGACAAGTATTTTCGG | 59.727 | 37.037 | 0.00 | 0.00 | 37.32 | 4.30 |
129 | 130 | 7.807433 | TGTCCATTTTGATGACAAGTATTTTCG | 59.193 | 33.333 | 0.00 | 0.00 | 37.32 | 3.46 |
130 | 131 | 9.474920 | TTGTCCATTTTGATGACAAGTATTTTC | 57.525 | 29.630 | 0.00 | 0.00 | 37.32 | 2.29 |
131 | 132 | 9.829507 | TTTGTCCATTTTGATGACAAGTATTTT | 57.170 | 25.926 | 0.00 | 0.00 | 37.13 | 1.82 |
132 | 133 | 9.829507 | TTTTGTCCATTTTGATGACAAGTATTT | 57.170 | 25.926 | 0.00 | 0.00 | 37.13 | 1.40 |
133 | 134 | 9.829507 | TTTTTGTCCATTTTGATGACAAGTATT | 57.170 | 25.926 | 0.00 | 0.00 | 37.13 | 1.89 |
134 | 135 | 9.480053 | CTTTTTGTCCATTTTGATGACAAGTAT | 57.520 | 29.630 | 0.00 | 0.00 | 37.13 | 2.12 |
135 | 136 | 8.690884 | TCTTTTTGTCCATTTTGATGACAAGTA | 58.309 | 29.630 | 0.00 | 0.00 | 37.13 | 2.24 |
136 | 137 | 7.555087 | TCTTTTTGTCCATTTTGATGACAAGT | 58.445 | 30.769 | 0.00 | 0.00 | 37.13 | 3.16 |
137 | 138 | 8.422973 | TTCTTTTTGTCCATTTTGATGACAAG | 57.577 | 30.769 | 0.00 | 0.00 | 37.13 | 3.16 |
138 | 139 | 8.828644 | CATTCTTTTTGTCCATTTTGATGACAA | 58.171 | 29.630 | 0.00 | 0.00 | 34.47 | 3.18 |
139 | 140 | 7.986320 | ACATTCTTTTTGTCCATTTTGATGACA | 59.014 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
140 | 141 | 8.369218 | ACATTCTTTTTGTCCATTTTGATGAC | 57.631 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
166 | 167 | 9.259832 | ACTCTTGGAGCCAAAATTAATTAAGAT | 57.740 | 29.630 | 0.01 | 0.00 | 35.33 | 2.40 |
167 | 168 | 8.650143 | ACTCTTGGAGCCAAAATTAATTAAGA | 57.350 | 30.769 | 0.01 | 3.77 | 35.33 | 2.10 |
168 | 169 | 9.710900 | AAACTCTTGGAGCCAAAATTAATTAAG | 57.289 | 29.630 | 0.01 | 0.00 | 35.33 | 1.85 |
171 | 172 | 9.875691 | GATAAACTCTTGGAGCCAAAATTAATT | 57.124 | 29.630 | 3.24 | 0.00 | 35.33 | 1.40 |
172 | 173 | 9.259832 | AGATAAACTCTTGGAGCCAAAATTAAT | 57.740 | 29.630 | 3.24 | 0.00 | 35.33 | 1.40 |
173 | 174 | 8.522830 | CAGATAAACTCTTGGAGCCAAAATTAA | 58.477 | 33.333 | 3.24 | 0.00 | 35.33 | 1.40 |
174 | 175 | 7.888021 | TCAGATAAACTCTTGGAGCCAAAATTA | 59.112 | 33.333 | 3.24 | 1.89 | 35.33 | 1.40 |
175 | 176 | 6.721208 | TCAGATAAACTCTTGGAGCCAAAATT | 59.279 | 34.615 | 3.24 | 0.00 | 35.33 | 1.82 |
176 | 177 | 6.151817 | GTCAGATAAACTCTTGGAGCCAAAAT | 59.848 | 38.462 | 3.24 | 0.00 | 35.33 | 1.82 |
192 | 193 | 3.054166 | CCAACACGTCACGTCAGATAAA | 58.946 | 45.455 | 0.00 | 0.00 | 38.32 | 1.40 |
262 | 263 | 2.818169 | GGGAGGGCACACAGACACA | 61.818 | 63.158 | 0.00 | 0.00 | 0.00 | 3.72 |
263 | 264 | 2.032681 | GGGAGGGCACACAGACAC | 59.967 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
264 | 265 | 3.625897 | CGGGAGGGCACACAGACA | 61.626 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
347 | 377 | 4.827087 | CGACGGCAGCCAGCTCAT | 62.827 | 66.667 | 13.30 | 0.00 | 44.79 | 2.90 |
418 | 454 | 1.790123 | GCGTGTCATGTGGTTTATGCG | 60.790 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
439 | 475 | 2.880890 | ACTTTTTCGCTTCACTCTGCAT | 59.119 | 40.909 | 0.00 | 0.00 | 0.00 | 3.96 |
458 | 494 | 4.782019 | AAAATTGTCACACACACACACT | 57.218 | 36.364 | 0.00 | 0.00 | 33.41 | 3.55 |
459 | 495 | 4.683781 | ACAAAAATTGTCACACACACACAC | 59.316 | 37.500 | 0.00 | 0.00 | 40.56 | 3.82 |
460 | 496 | 4.876125 | ACAAAAATTGTCACACACACACA | 58.124 | 34.783 | 0.00 | 0.00 | 40.56 | 3.72 |
484 | 529 | 1.957695 | GCATCGCATCGCATGGAGA | 60.958 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
488 | 533 | 1.442017 | CATGGCATCGCATCGCATG | 60.442 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
489 | 534 | 2.951458 | CATGGCATCGCATCGCAT | 59.049 | 55.556 | 0.00 | 0.00 | 0.00 | 4.73 |
490 | 535 | 3.956317 | GCATGGCATCGCATCGCA | 61.956 | 61.111 | 14.33 | 0.00 | 0.00 | 5.10 |
492 | 537 | 3.642981 | ACGCATGGCATCGCATCG | 61.643 | 61.111 | 17.71 | 10.37 | 0.00 | 3.84 |
494 | 539 | 2.825387 | ACACGCATGGCATCGCAT | 60.825 | 55.556 | 17.71 | 4.23 | 0.00 | 4.73 |
495 | 540 | 3.498834 | GACACGCATGGCATCGCA | 61.499 | 61.111 | 17.71 | 0.00 | 32.03 | 5.10 |
496 | 541 | 4.241999 | GGACACGCATGGCATCGC | 62.242 | 66.667 | 15.79 | 13.26 | 34.30 | 4.58 |
497 | 542 | 3.576356 | GGGACACGCATGGCATCG | 61.576 | 66.667 | 14.74 | 14.74 | 34.30 | 3.84 |
503 | 554 | 0.606401 | AGTTCAAGGGGACACGCATG | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
517 | 568 | 3.079578 | CGGTGAGTACTGGAGTAGTTCA | 58.920 | 50.000 | 0.00 | 0.00 | 40.89 | 3.18 |
527 | 578 | 2.181021 | GGCGTCCGGTGAGTACTG | 59.819 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
528 | 579 | 3.437795 | CGGCGTCCGGTGAGTACT | 61.438 | 66.667 | 0.00 | 0.00 | 44.15 | 2.73 |
581 | 636 | 1.226435 | GTTGGCAAACGCGAACACA | 60.226 | 52.632 | 15.93 | 1.62 | 44.68 | 3.72 |
628 | 683 | 2.579684 | GATCCTGGACTGCACCGGTC | 62.580 | 65.000 | 2.59 | 0.00 | 38.88 | 4.79 |
629 | 684 | 2.607750 | ATCCTGGACTGCACCGGT | 60.608 | 61.111 | 0.00 | 0.00 | 34.74 | 5.28 |
630 | 685 | 2.187946 | GATCCTGGACTGCACCGG | 59.812 | 66.667 | 0.00 | 0.00 | 36.18 | 5.28 |
673 | 728 | 5.245075 | TGTGGGTTTATGGAAGGTTTTGATC | 59.755 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
745 | 808 | 2.820037 | GGTCGGGCTGCTTACTGC | 60.820 | 66.667 | 0.00 | 0.00 | 43.25 | 4.40 |
749 | 812 | 3.766691 | GTCGGGTCGGGCTGCTTA | 61.767 | 66.667 | 0.00 | 0.00 | 0.00 | 3.09 |
769 | 837 | 1.153901 | TTATATAGAGCGCGGCGGC | 60.154 | 57.895 | 25.03 | 15.97 | 0.00 | 6.53 |
819 | 897 | 1.909302 | GAGGAGGTGAACAAGATGGGA | 59.091 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
823 | 901 | 0.976641 | TGCGAGGAGGTGAACAAGAT | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
824 | 902 | 0.033504 | GTGCGAGGAGGTGAACAAGA | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
849 | 927 | 1.231928 | GGAGGAGGAGGAGAGGGAC | 59.768 | 68.421 | 0.00 | 0.00 | 0.00 | 4.46 |
853 | 931 | 2.018086 | AGGGGGAGGAGGAGGAGAG | 61.018 | 68.421 | 0.00 | 0.00 | 0.00 | 3.20 |
857 | 935 | 2.613576 | GAAGGAGGGGGAGGAGGAGG | 62.614 | 70.000 | 0.00 | 0.00 | 0.00 | 4.30 |
865 | 943 | 2.284405 | GTGGACGAAGGAGGGGGA | 60.284 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
866 | 944 | 3.400054 | GGTGGACGAAGGAGGGGG | 61.400 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
869 | 947 | 0.320771 | CTTGTGGTGGACGAAGGAGG | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
877 | 955 | 1.605753 | GTTTCTCCCTTGTGGTGGAC | 58.394 | 55.000 | 0.00 | 0.00 | 34.77 | 4.02 |
889 | 967 | 0.112412 | TTCTGGCTTGGGGTTTCTCC | 59.888 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
977 | 1062 | 9.090692 | CCATATTCTCAATTGACAAACAAATCC | 57.909 | 33.333 | 3.38 | 0.00 | 42.03 | 3.01 |
995 | 1089 | 4.494091 | CCAGAACTGGTCACCATATTCT | 57.506 | 45.455 | 15.06 | 15.06 | 45.53 | 2.40 |
1008 | 1102 | 3.181507 | CGCATTGGTACATTCCAGAACTG | 60.182 | 47.826 | 0.00 | 0.00 | 39.30 | 3.16 |
1009 | 1103 | 3.009723 | CGCATTGGTACATTCCAGAACT | 58.990 | 45.455 | 0.00 | 0.00 | 39.30 | 3.01 |
1010 | 1104 | 2.477863 | GCGCATTGGTACATTCCAGAAC | 60.478 | 50.000 | 0.30 | 0.00 | 39.30 | 3.01 |
1012 | 1106 | 1.339535 | TGCGCATTGGTACATTCCAGA | 60.340 | 47.619 | 5.66 | 0.00 | 39.30 | 3.86 |
1013 | 1107 | 1.093972 | TGCGCATTGGTACATTCCAG | 58.906 | 50.000 | 5.66 | 0.00 | 39.30 | 3.86 |
1014 | 1108 | 1.675483 | GATGCGCATTGGTACATTCCA | 59.325 | 47.619 | 26.12 | 0.00 | 39.30 | 3.53 |
1015 | 1109 | 1.675483 | TGATGCGCATTGGTACATTCC | 59.325 | 47.619 | 26.12 | 7.91 | 39.30 | 3.01 |
1016 | 1110 | 3.419264 | TTGATGCGCATTGGTACATTC | 57.581 | 42.857 | 26.12 | 9.74 | 39.30 | 2.67 |
1017 | 1111 | 4.389890 | AATTGATGCGCATTGGTACATT | 57.610 | 36.364 | 26.12 | 10.65 | 39.30 | 2.71 |
1018 | 1112 | 4.337836 | TGTAATTGATGCGCATTGGTACAT | 59.662 | 37.500 | 26.12 | 9.89 | 39.30 | 2.29 |
1020 | 1114 | 4.285807 | TGTAATTGATGCGCATTGGTAC | 57.714 | 40.909 | 26.12 | 21.75 | 0.00 | 3.34 |
1029 | 1135 | 4.083855 | ACACTGTCAGTTGTAATTGATGCG | 60.084 | 41.667 | 1.67 | 0.00 | 0.00 | 4.73 |
1040 | 1146 | 1.643292 | CGTGCCACACTGTCAGTTG | 59.357 | 57.895 | 1.67 | 5.58 | 31.34 | 3.16 |
1063 | 1169 | 4.033243 | CGAATCAATCTGCGACATCAGAAA | 59.967 | 41.667 | 0.00 | 0.00 | 45.17 | 2.52 |
1260 | 1375 | 3.297620 | CCAGGCTGCGGCTTGTTT | 61.298 | 61.111 | 25.98 | 1.44 | 42.88 | 2.83 |
1423 | 1558 | 3.213402 | GACGGCGAGGGAGAGGAG | 61.213 | 72.222 | 16.62 | 0.00 | 0.00 | 3.69 |
1467 | 1602 | 2.098831 | GGGCTTGAACGCGAGGTAC | 61.099 | 63.158 | 15.93 | 0.00 | 0.00 | 3.34 |
1939 | 2074 | 2.959484 | CGCAGGACCTGGACACCAT | 61.959 | 63.158 | 23.09 | 0.00 | 30.82 | 3.55 |
1962 | 2097 | 1.053424 | AGAACAGGAACGGCACCTTA | 58.947 | 50.000 | 0.00 | 0.00 | 35.35 | 2.69 |
2000 | 2140 | 4.038642 | GGCCAGTAACCATTTTTGTCTTGA | 59.961 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2052 | 2195 | 0.039326 | AGCAGCCTGAATCCTTTGCT | 59.961 | 50.000 | 0.00 | 0.00 | 37.09 | 3.91 |
2065 | 2212 | 0.598065 | AAAACATCACGGAAGCAGCC | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2117 | 2265 | 6.512297 | ACGGACAAAAGAATTAACATTGCTT | 58.488 | 32.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2296 | 2461 | 8.964476 | ACCATATGACAAAACTTATACTCCTG | 57.036 | 34.615 | 3.65 | 0.00 | 0.00 | 3.86 |
2425 | 2595 | 6.777213 | ATGACCTAGTGTAAACTGGAGTAG | 57.223 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2513 | 2683 | 2.331451 | GTTGCCGTGGTGCTGAAC | 59.669 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
2524 | 2694 | 2.126228 | CAAGCATGCCTGTTGCCG | 60.126 | 61.111 | 15.66 | 0.00 | 41.06 | 5.69 |
2541 | 2711 | 0.393132 | GCTGCTTCCCCTGGACTAAC | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2557 | 2727 | 4.371786 | TGTCTACACAGAGTTTTGAGCTG | 58.628 | 43.478 | 0.00 | 0.00 | 35.81 | 4.24 |
2559 | 2729 | 4.991056 | TCATGTCTACACAGAGTTTTGAGC | 59.009 | 41.667 | 0.00 | 0.00 | 35.41 | 4.26 |
2567 | 2737 | 7.042858 | GCTGATTATGTTCATGTCTACACAGAG | 60.043 | 40.741 | 0.00 | 0.00 | 35.41 | 3.35 |
2588 | 2758 | 2.447443 | TCAGTCCTTGTACGAGCTGAT | 58.553 | 47.619 | 13.56 | 0.00 | 0.00 | 2.90 |
2655 | 2835 | 4.318332 | CAGACATTTGACCTGCAAGTCTA | 58.682 | 43.478 | 16.18 | 6.26 | 38.95 | 2.59 |
2670 | 2850 | 2.579873 | AGTGCTTGAACTGCAGACATT | 58.420 | 42.857 | 23.35 | 3.80 | 41.41 | 2.71 |
2673 | 2853 | 2.032204 | CAGAAGTGCTTGAACTGCAGAC | 60.032 | 50.000 | 23.35 | 14.31 | 41.41 | 3.51 |
2736 | 2917 | 6.173427 | TCTAATCTGGCATGCACACTAATA | 57.827 | 37.500 | 21.36 | 2.63 | 0.00 | 0.98 |
2746 | 2927 | 3.741249 | AGTGCTGATCTAATCTGGCATG | 58.259 | 45.455 | 0.00 | 0.00 | 39.39 | 4.06 |
2753 | 2934 | 4.186926 | TGTGCTGAAGTGCTGATCTAATC | 58.813 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
2758 | 2939 | 1.875514 | TGTTGTGCTGAAGTGCTGATC | 59.124 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
2835 | 3016 | 1.659098 | GACCAGACGGCAAAGATAACG | 59.341 | 52.381 | 0.00 | 0.00 | 34.57 | 3.18 |
2846 | 3027 | 1.522668 | TTTCAGCATTGACCAGACGG | 58.477 | 50.000 | 0.00 | 0.00 | 38.77 | 4.79 |
2867 | 3048 | 0.524862 | GCTGGGAGCTCACAACATTG | 59.475 | 55.000 | 21.33 | 9.04 | 38.45 | 2.82 |
2901 | 3082 | 2.342279 | CGGCCAAGACGTGAAGGA | 59.658 | 61.111 | 2.24 | 0.00 | 0.00 | 3.36 |
2903 | 3084 | 3.423154 | GCCGGCCAAGACGTGAAG | 61.423 | 66.667 | 18.11 | 0.00 | 28.54 | 3.02 |
2934 | 3115 | 9.486497 | GCAGATTCTGACAATTTCTCTGATATA | 57.514 | 33.333 | 17.87 | 0.00 | 32.44 | 0.86 |
2960 | 3141 | 2.376808 | ATCCGAACAGAAGTGCAGAG | 57.623 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.