Multiple sequence alignment - TraesCS3B01G367700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G367700 chr3B 100.000 5282 0 0 1 5282 580029113 580034394 0.000000e+00 9755.0
1 TraesCS3B01G367700 chr3B 98.942 189 2 0 4944 5132 580033872 580034060 6.550000e-89 339.0
2 TraesCS3B01G367700 chr3B 98.942 189 2 0 4760 4948 580034056 580034244 6.550000e-89 339.0
3 TraesCS3B01G367700 chr3B 82.373 295 24 22 4802 5082 580033821 580034101 1.140000e-56 231.0
4 TraesCS3B01G367700 chr3B 82.373 295 24 22 4709 4989 580033914 580034194 1.140000e-56 231.0
5 TraesCS3B01G367700 chr3B 100.000 97 0 0 4986 5082 580033821 580033917 4.200000e-41 180.0
6 TraesCS3B01G367700 chr3B 100.000 97 0 0 4709 4805 580034098 580034194 4.200000e-41 180.0
7 TraesCS3B01G367700 chr2A 93.891 4109 160 32 442 4523 337859038 337863082 0.000000e+00 6113.0
8 TraesCS3B01G367700 chr2A 93.405 4109 168 33 442 4523 337719245 337723277 0.000000e+00 5991.0
9 TraesCS3B01G367700 chr2A 93.593 1670 67 20 442 2089 337856426 337854775 0.000000e+00 2455.0
10 TraesCS3B01G367700 chr2A 93.477 1671 68 12 442 2089 337716647 337714995 0.000000e+00 2444.0
11 TraesCS3B01G367700 chr2A 89.498 438 30 10 1 433 337718670 337719096 1.670000e-149 540.0
12 TraesCS3B01G367700 chr2A 89.498 438 30 10 1 433 337858463 337858889 1.670000e-149 540.0
13 TraesCS3B01G367700 chr2A 88.356 438 35 10 1 433 337857001 337856575 3.650000e-141 512.0
14 TraesCS3B01G367700 chr2A 87.443 438 33 11 1 433 337717216 337716796 7.950000e-133 484.0
15 TraesCS3B01G367700 chr2A 81.224 245 25 9 50 276 707004909 707004668 1.510000e-40 178.0
16 TraesCS3B01G367700 chr7B 93.739 4105 169 34 445 4523 32024287 32020245 0.000000e+00 6076.0
17 TraesCS3B01G367700 chr7B 96.483 1052 32 3 1040 2086 32024969 32026020 0.000000e+00 1733.0
18 TraesCS3B01G367700 chr7B 88.584 438 34 10 1 433 32024866 32024440 7.840000e-143 518.0
19 TraesCS3B01G367700 chr7B 91.071 112 9 1 5110 5220 650237817 650237706 3.300000e-32 150.0
20 TraesCS3B01G367700 chr7B 90.826 109 7 3 5108 5215 32019917 32019811 5.510000e-30 143.0
21 TraesCS3B01G367700 chr3A 92.513 2057 111 18 2311 4361 583698392 583700411 0.000000e+00 2905.0
22 TraesCS3B01G367700 chr3A 92.683 1230 67 13 355 1565 583696407 583697632 0.000000e+00 1751.0
23 TraesCS3B01G367700 chr3A 94.143 700 36 3 1590 2286 583697625 583698322 0.000000e+00 1061.0
24 TraesCS3B01G367700 chr3A 93.204 206 13 1 151 356 583696122 583696326 8.600000e-78 302.0
25 TraesCS3B01G367700 chr3A 87.597 129 10 6 5120 5246 583703906 583704030 1.530000e-30 145.0
26 TraesCS3B01G367700 chr3D 92.136 2060 121 21 2311 4361 442392806 442394833 0.000000e+00 2868.0
27 TraesCS3B01G367700 chr3D 94.064 1196 56 5 1122 2304 442391551 442392744 0.000000e+00 1801.0
28 TraesCS3B01G367700 chr3D 89.539 1128 70 14 6 1124 442390407 442391495 0.000000e+00 1386.0
29 TraesCS3B01G367700 chr3D 87.413 143 18 0 5120 5262 442499377 442499519 1.180000e-36 165.0
30 TraesCS3B01G367700 chr2B 83.117 231 34 4 50 276 680205711 680205482 6.930000e-49 206.0
31 TraesCS3B01G367700 chr2D 81.933 238 30 7 50 276 567488973 567488738 6.980000e-44 189.0
32 TraesCS3B01G367700 chr2D 93.333 45 3 0 315 359 567488737 567488693 3.410000e-07 67.6
33 TraesCS3B01G367700 chr1A 94.175 103 5 1 5116 5217 3369045 3369147 7.080000e-34 156.0
34 TraesCS3B01G367700 chr1D 95.745 94 4 0 5116 5209 560671 560764 9.160000e-33 152.0
35 TraesCS3B01G367700 chr5D 93.069 101 5 2 5109 5209 545942685 545942783 4.260000e-31 147.0
36 TraesCS3B01G367700 chr5B 93.069 101 6 1 5109 5209 689115708 689115807 4.260000e-31 147.0
37 TraesCS3B01G367700 chr4A 92.233 103 6 1 5107 5209 623387090 623386990 1.530000e-30 145.0
38 TraesCS3B01G367700 chr6B 93.333 45 3 0 315 359 223620460 223620416 3.410000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G367700 chr3B 580029113 580034394 5281 False 1607.857143 9755 94.661429 1 5282 7 chr3B.!!$F1 5281
1 TraesCS3B01G367700 chr2A 337858463 337863082 4619 False 3326.500000 6113 91.694500 1 4523 2 chr2A.!!$F2 4522
2 TraesCS3B01G367700 chr2A 337718670 337723277 4607 False 3265.500000 5991 91.451500 1 4523 2 chr2A.!!$F1 4522
3 TraesCS3B01G367700 chr2A 337854775 337857001 2226 True 1483.500000 2455 90.974500 1 2089 2 chr2A.!!$R3 2088
4 TraesCS3B01G367700 chr2A 337714995 337717216 2221 True 1464.000000 2444 90.460000 1 2089 2 chr2A.!!$R2 2088
5 TraesCS3B01G367700 chr7B 32019811 32024866 5055 True 2245.666667 6076 91.049667 1 5215 3 chr7B.!!$R2 5214
6 TraesCS3B01G367700 chr7B 32024969 32026020 1051 False 1733.000000 1733 96.483000 1040 2086 1 chr7B.!!$F1 1046
7 TraesCS3B01G367700 chr3A 583696122 583704030 7908 False 1232.800000 2905 92.028000 151 5246 5 chr3A.!!$F1 5095
8 TraesCS3B01G367700 chr3D 442390407 442394833 4426 False 2018.333333 2868 91.913000 6 4361 3 chr3D.!!$F2 4355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 751 0.825840 AGCGCTTAGTTTTTGGCCCA 60.826 50.000 2.64 0.0 0.00 5.36 F
1056 1272 1.365633 GTTGGCGCCAATGTCCAAA 59.634 52.632 41.80 17.6 41.05 3.28 F
2015 2302 1.676006 GTAGTGATTCCCCCATTTGCG 59.324 52.381 0.00 0.0 0.00 4.85 F
2994 3362 0.035630 GAGCTCAGTGACAGGCCAAT 60.036 55.000 9.40 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2069 1.452773 GTCGACGATAACAACACGCAA 59.547 47.619 0.00 0.0 0.00 4.85 R
2985 3353 0.700564 ATCCACTGTCATTGGCCTGT 59.299 50.000 3.32 0.0 33.71 4.00 R
3543 3913 1.742761 AAATGAGGACATGACAGCGG 58.257 50.000 0.00 0.0 36.79 5.52 R
4930 8272 0.038251 CTCTGCTGACCACGCTGTTA 60.038 55.000 0.00 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 3.330720 CACCCTTTCCCGCCCTCT 61.331 66.667 0.00 0.00 0.00 3.69
98 99 2.674380 CTCAAGCCGCCTTGCCTT 60.674 61.111 0.24 0.00 46.38 4.35
112 113 2.670934 CCTTCAAGTGGCTGCGCT 60.671 61.111 9.73 0.00 0.00 5.92
302 306 1.410153 CAGCCACCTTTTTGCAGAGTT 59.590 47.619 0.00 0.00 0.00 3.01
309 313 5.111293 CACCTTTTTGCAGAGTTGATTTGT 58.889 37.500 0.00 0.00 0.00 2.83
347 351 1.831736 AGGTAAGATTGAGGTGGACCG 59.168 52.381 0.00 0.00 42.08 4.79
375 383 8.872845 GTTGCTAATTGTTTGCTAATTGCTATT 58.127 29.630 0.00 0.00 43.37 1.73
381 389 7.686438 TTGTTTGCTAATTGCTATTCAGAGA 57.314 32.000 0.00 0.00 43.37 3.10
395 404 6.935771 GCTATTCAGAGAACAATGATGATCCT 59.064 38.462 0.00 0.00 0.00 3.24
442 451 8.461222 CAAGAACAAGTTGCTAATTGATATCCA 58.539 33.333 14.92 0.00 0.00 3.41
443 452 8.218338 AGAACAAGTTGCTAATTGATATCCAG 57.782 34.615 14.92 0.00 0.00 3.86
477 663 8.647143 TGATGAACACATACACATGTACATAG 57.353 34.615 8.32 6.97 43.73 2.23
490 676 8.629158 ACACATGTACATAGTTTTGTTGTCAAT 58.371 29.630 8.32 0.00 33.32 2.57
564 751 0.825840 AGCGCTTAGTTTTTGGCCCA 60.826 50.000 2.64 0.00 0.00 5.36
570 757 2.480642 TAGTTTTTGGCCCAGGGTTT 57.519 45.000 7.55 0.00 0.00 3.27
630 817 2.071540 TCTTGAAGATCTGTGCTTGCG 58.928 47.619 0.00 0.00 0.00 4.85
676 863 3.206150 GCCACGACTTATCCATGTCAAT 58.794 45.455 0.00 0.00 33.18 2.57
723 910 2.125512 GTTCCTCGCGGCACATCT 60.126 61.111 6.13 0.00 0.00 2.90
853 1068 8.742554 AACCAAACAATCGACTTTGAATATTC 57.257 30.769 8.60 8.60 30.20 1.75
869 1084 5.824624 TGAATATTCCATCAAAGGCTGACTC 59.175 40.000 12.90 0.00 36.69 3.36
940 1155 5.947663 TCAAATTCCTCCAACCTTACTTCA 58.052 37.500 0.00 0.00 0.00 3.02
978 1194 3.264450 TCTTTCAGTCAGATCTTTCCCCC 59.736 47.826 0.00 0.00 0.00 5.40
1056 1272 1.365633 GTTGGCGCCAATGTCCAAA 59.634 52.632 41.80 17.60 41.05 3.28
1134 1408 8.739039 TCAATCTTTTCAATACCATACACTTGG 58.261 33.333 0.00 0.00 42.82 3.61
1175 1449 2.420129 GGACATAGTGAATTGGCGGAGT 60.420 50.000 0.00 0.00 0.00 3.85
1188 1462 2.223745 GGCGGAGTTGTAGTTGGAAAA 58.776 47.619 0.00 0.00 0.00 2.29
1240 1514 2.415625 CGACACAGTTGGTAGGAGTAGC 60.416 54.545 0.00 0.00 0.00 3.58
1276 1550 7.985634 TGACAGAAAGTTTTCAACATTTAGC 57.014 32.000 7.30 0.00 39.61 3.09
1295 1569 1.909376 CACTGACATCGGGTAACTCG 58.091 55.000 0.00 0.00 0.00 4.18
1511 1791 2.026542 ACAAGCATCAGCCATCTCAAGA 60.027 45.455 0.00 0.00 43.56 3.02
1621 1904 9.753674 TTGAATTTGGAAGGAACATATTACTCT 57.246 29.630 0.00 0.00 0.00 3.24
1995 2282 9.847224 AATCCCTATTTGTACAGTTAATAGGTG 57.153 33.333 27.76 22.24 44.80 4.00
2015 2302 1.676006 GTAGTGATTCCCCCATTTGCG 59.324 52.381 0.00 0.00 0.00 4.85
2145 2432 4.251268 TCATTTGCTCTCACAGATGTCAG 58.749 43.478 0.00 0.00 34.60 3.51
2290 2582 4.457257 GCTCTAAGCTTTGGTGAATGAAGT 59.543 41.667 3.20 0.00 38.45 3.01
2698 3048 8.618240 TTCTTCCTGGTGGTCTTTATATCTAA 57.382 34.615 0.00 0.00 34.23 2.10
2737 3087 4.652175 CACTGCTGTGTGTATGTAACTG 57.348 45.455 15.05 0.00 39.24 3.16
2759 3110 2.162208 ACAGTACAGAAAATGCCATGCG 59.838 45.455 0.00 0.00 0.00 4.73
2770 3121 6.886459 AGAAAATGCCATGCGGAATACTATAT 59.114 34.615 0.00 0.00 26.03 0.86
2960 3317 7.440523 AAAAGATCCGATTATATTGGAGTGC 57.559 36.000 2.34 0.00 45.81 4.40
2985 3353 7.923344 GCTAATTATAGAGTTTGAGCTCAGTGA 59.077 37.037 17.43 4.46 37.94 3.41
2986 3354 9.243637 CTAATTATAGAGTTTGAGCTCAGTGAC 57.756 37.037 17.43 16.11 37.94 3.67
2987 3355 6.590234 TTATAGAGTTTGAGCTCAGTGACA 57.410 37.500 17.43 0.00 37.94 3.58
2988 3356 3.383620 AGAGTTTGAGCTCAGTGACAG 57.616 47.619 17.43 0.00 37.94 3.51
2989 3357 2.036992 AGAGTTTGAGCTCAGTGACAGG 59.963 50.000 17.43 0.00 37.94 4.00
2990 3358 0.871057 GTTTGAGCTCAGTGACAGGC 59.129 55.000 17.43 0.00 0.00 4.85
2991 3359 0.250467 TTTGAGCTCAGTGACAGGCC 60.250 55.000 17.43 0.00 0.00 5.19
2992 3360 1.410050 TTGAGCTCAGTGACAGGCCA 61.410 55.000 17.43 0.00 0.00 5.36
2993 3361 1.372683 GAGCTCAGTGACAGGCCAA 59.627 57.895 9.40 0.00 0.00 4.52
2994 3362 0.035630 GAGCTCAGTGACAGGCCAAT 60.036 55.000 9.40 0.00 0.00 3.16
2995 3363 0.322277 AGCTCAGTGACAGGCCAATG 60.322 55.000 5.01 0.00 33.86 2.82
3037 3405 3.588396 TGTTAGGGGAAATACCGGTTCTT 59.412 43.478 15.04 6.46 40.11 2.52
3166 3534 7.649533 TGCATGATTCTTATCTTTGGACATT 57.350 32.000 0.00 0.00 0.00 2.71
3331 3700 6.613153 AAAGGTAGCTACATCTCTCTGTTT 57.387 37.500 24.75 4.24 0.00 2.83
3397 3766 4.025145 GGTCTCAGAAAAGGTGTTGTTACG 60.025 45.833 0.00 0.00 0.00 3.18
3452 3821 0.036671 CTCAGAGGCATGCACACTCA 60.037 55.000 21.36 0.55 33.76 3.41
3454 3823 1.003928 TCAGAGGCATGCACACTCATT 59.996 47.619 21.36 0.00 33.76 2.57
3543 3913 7.674471 ACTTACCAGTAGAAGCATTTTCTTC 57.326 36.000 0.00 0.00 42.01 2.87
3545 3915 4.003648 ACCAGTAGAAGCATTTTCTTCCG 58.996 43.478 0.41 0.00 42.52 4.30
3552 3922 2.440409 AGCATTTTCTTCCGCTGTCAT 58.560 42.857 0.00 0.00 32.33 3.06
3564 3934 3.055458 TCCGCTGTCATGTCCTCATTTTA 60.055 43.478 0.00 0.00 31.15 1.52
3565 3935 3.063997 CCGCTGTCATGTCCTCATTTTAC 59.936 47.826 0.00 0.00 31.15 2.01
3685 4057 9.255304 GCTGTCTAATATTTTTGTGTTTTCCAA 57.745 29.630 0.00 0.00 0.00 3.53
3862 4234 6.650807 TGAATTCTATTTGCAGTCTCTTCGTT 59.349 34.615 7.05 0.00 0.00 3.85
3889 4261 4.159693 TGCTTTATTACTTCAGCCTCGAGA 59.840 41.667 15.71 0.00 0.00 4.04
3908 4280 7.538678 CCTCGAGATTTTCAGTTGGTTAAAATG 59.461 37.037 15.71 0.00 33.99 2.32
3944 4316 1.282157 ACATTGACTAAGCCTCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
3977 4349 5.079643 GGCACCATATTTTACCAGGATGAT 58.920 41.667 0.00 0.00 39.69 2.45
3986 4358 1.150081 CCAGGATGATGGGCAGTCC 59.850 63.158 0.00 0.00 39.69 3.85
4078 4450 1.570813 TATTCGATGCAGGTTCGCAG 58.429 50.000 3.32 0.00 46.99 5.18
4144 4516 5.400485 GCTATTTTGTGACAGAAGTTTGCTG 59.600 40.000 0.00 0.00 39.26 4.41
4323 4695 3.190079 TGATGATAAACTGAGCAGCGTC 58.810 45.455 0.00 0.00 0.00 5.19
4341 4713 3.001330 GCGTCAACATTAGTGCCTGATAC 59.999 47.826 0.00 0.00 0.00 2.24
4347 4719 6.316140 TCAACATTAGTGCCTGATACACAATC 59.684 38.462 0.00 0.00 40.59 2.67
4381 4753 2.809665 GCATTGTGATCAGGGGCTAGAG 60.810 54.545 0.00 0.00 0.00 2.43
4401 4773 4.408378 GGCCCTGCCGAAAACTTA 57.592 55.556 0.00 0.00 39.62 2.24
4411 4783 5.184287 CCTGCCGAAAACTTAAAAGGGATAA 59.816 40.000 0.00 0.00 0.00 1.75
4416 4788 7.913821 GCCGAAAACTTAAAAGGGATAAGTATG 59.086 37.037 0.00 0.00 41.49 2.39
4441 4814 7.670559 TGCCTATTTACCCTTAGCAGTTTAAAA 59.329 33.333 0.00 0.00 0.00 1.52
4442 4815 8.692710 GCCTATTTACCCTTAGCAGTTTAAAAT 58.307 33.333 0.00 0.00 0.00 1.82
4493 4866 9.191995 CAAGTTGGTTATTTCCTAATGTTTGTC 57.808 33.333 0.00 0.00 0.00 3.18
4507 4880 2.143925 GTTTGTCAGTTCGGCTTAGCT 58.856 47.619 3.59 0.00 0.00 3.32
4510 4883 1.618837 TGTCAGTTCGGCTTAGCTTCT 59.381 47.619 3.59 0.00 0.00 2.85
4527 4900 4.519350 AGCTTCTAAGTTTGTAAGTTGGCC 59.481 41.667 0.00 0.00 0.00 5.36
4545 4918 4.644103 GGCCATATAATGCCTAGCAATG 57.356 45.455 0.00 0.00 43.62 2.82
4546 4919 3.181483 GGCCATATAATGCCTAGCAATGC 60.181 47.826 0.00 0.00 43.62 3.56
4564 4937 5.675575 GCAATGCCAGTGAATAGACAAGAAG 60.676 44.000 0.00 0.00 0.00 2.85
4565 4938 4.890158 TGCCAGTGAATAGACAAGAAGA 57.110 40.909 0.00 0.00 0.00 2.87
4566 4939 5.227569 TGCCAGTGAATAGACAAGAAGAA 57.772 39.130 0.00 0.00 0.00 2.52
4584 4957 9.722056 CAAGAAGAAAAATAGTCCCAATTATCG 57.278 33.333 0.00 0.00 0.00 2.92
4588 4961 6.486993 AGAAAAATAGTCCCAATTATCGCTCC 59.513 38.462 0.00 0.00 0.00 4.70
4592 4965 2.505819 AGTCCCAATTATCGCTCCAAGT 59.494 45.455 0.00 0.00 0.00 3.16
4600 4973 1.280457 ATCGCTCCAAGTTTCTCCCT 58.720 50.000 0.00 0.00 0.00 4.20
4608 4981 3.650942 TCCAAGTTTCTCCCTTGCTCTTA 59.349 43.478 0.00 0.00 38.36 2.10
4615 4988 4.803098 TCTCCCTTGCTCTTAGTTGTAC 57.197 45.455 0.00 0.00 0.00 2.90
4617 4990 2.000447 CCCTTGCTCTTAGTTGTACGC 59.000 52.381 0.00 0.00 0.00 4.42
4622 4996 1.404315 GCTCTTAGTTGTACGCAGCCT 60.404 52.381 0.00 0.00 0.00 4.58
4627 5001 0.900647 AGTTGTACGCAGCCTCCTCT 60.901 55.000 0.00 0.00 0.00 3.69
4642 5016 3.535629 CTCTTGGCTGGGTGTCGCA 62.536 63.158 0.00 0.00 0.00 5.10
4652 5026 4.573162 GTGTCGCACCTCTACCAC 57.427 61.111 0.00 0.00 0.00 4.16
4654 5028 0.109226 GTGTCGCACCTCTACCACTC 60.109 60.000 0.00 0.00 0.00 3.51
4655 5029 0.251209 TGTCGCACCTCTACCACTCT 60.251 55.000 0.00 0.00 0.00 3.24
4656 5030 0.171455 GTCGCACCTCTACCACTCTG 59.829 60.000 0.00 0.00 0.00 3.35
4657 5031 0.251209 TCGCACCTCTACCACTCTGT 60.251 55.000 0.00 0.00 0.00 3.41
4658 5032 0.171455 CGCACCTCTACCACTCTGTC 59.829 60.000 0.00 0.00 0.00 3.51
4660 5034 1.067495 GCACCTCTACCACTCTGTCAC 60.067 57.143 0.00 0.00 0.00 3.67
4661 5035 1.200252 CACCTCTACCACTCTGTCACG 59.800 57.143 0.00 0.00 0.00 4.35
4662 5036 1.073444 ACCTCTACCACTCTGTCACGA 59.927 52.381 0.00 0.00 0.00 4.35
4663 5037 2.160205 CCTCTACCACTCTGTCACGAA 58.840 52.381 0.00 0.00 0.00 3.85
4664 5038 2.162608 CCTCTACCACTCTGTCACGAAG 59.837 54.545 0.00 0.00 0.00 3.79
4667 5041 0.315568 ACCACTCTGTCACGAAGAGC 59.684 55.000 0.00 0.00 44.22 4.09
4668 5042 0.389166 CCACTCTGTCACGAAGAGCC 60.389 60.000 0.00 0.00 44.22 4.70
4669 5043 0.315251 CACTCTGTCACGAAGAGCCA 59.685 55.000 0.00 0.00 44.22 4.75
4670 5044 1.040646 ACTCTGTCACGAAGAGCCAA 58.959 50.000 0.00 0.00 44.22 4.52
4671 5045 1.412710 ACTCTGTCACGAAGAGCCAAA 59.587 47.619 0.00 0.00 44.22 3.28
4672 5046 2.158957 ACTCTGTCACGAAGAGCCAAAA 60.159 45.455 0.00 0.00 44.22 2.44
4673 5047 2.872245 CTCTGTCACGAAGAGCCAAAAA 59.128 45.455 0.00 0.00 35.13 1.94
4674 5048 2.872245 TCTGTCACGAAGAGCCAAAAAG 59.128 45.455 0.00 0.00 0.00 2.27
4675 5049 2.872245 CTGTCACGAAGAGCCAAAAAGA 59.128 45.455 0.00 0.00 0.00 2.52
4676 5050 3.275143 TGTCACGAAGAGCCAAAAAGAA 58.725 40.909 0.00 0.00 0.00 2.52
4677 5051 3.064820 TGTCACGAAGAGCCAAAAAGAAC 59.935 43.478 0.00 0.00 0.00 3.01
4678 5052 3.064820 GTCACGAAGAGCCAAAAAGAACA 59.935 43.478 0.00 0.00 0.00 3.18
4680 5054 5.049680 GTCACGAAGAGCCAAAAAGAACATA 60.050 40.000 0.00 0.00 0.00 2.29
4681 5055 5.179368 TCACGAAGAGCCAAAAAGAACATAG 59.821 40.000 0.00 0.00 0.00 2.23
4682 5056 5.179368 CACGAAGAGCCAAAAAGAACATAGA 59.821 40.000 0.00 0.00 0.00 1.98
4683 5057 5.763204 ACGAAGAGCCAAAAAGAACATAGAA 59.237 36.000 0.00 0.00 0.00 2.10
4685 5059 6.293407 CGAAGAGCCAAAAAGAACATAGAACA 60.293 38.462 0.00 0.00 0.00 3.18
4687 5061 5.827797 AGAGCCAAAAAGAACATAGAACACA 59.172 36.000 0.00 0.00 0.00 3.72
4689 5063 6.449698 AGCCAAAAAGAACATAGAACACATG 58.550 36.000 0.00 0.00 0.00 3.21
4710 7647 3.503363 TGAGAAACATGCCAATCTCACAC 59.497 43.478 13.28 0.00 42.36 3.82
4712 7649 4.084287 AGAAACATGCCAATCTCACACAT 58.916 39.130 0.00 0.00 0.00 3.21
4719 7656 6.602803 ACATGCCAATCTCACACATACAAATA 59.397 34.615 0.00 0.00 0.00 1.40
4720 7657 7.286087 ACATGCCAATCTCACACATACAAATAT 59.714 33.333 0.00 0.00 0.00 1.28
4721 7658 7.030075 TGCCAATCTCACACATACAAATATG 57.970 36.000 0.00 0.00 43.46 1.78
4778 8120 3.760693 GCAGAGAATGCGTAGGGAA 57.239 52.632 0.00 0.00 46.99 3.97
4779 8121 2.024176 GCAGAGAATGCGTAGGGAAA 57.976 50.000 0.00 0.00 46.99 3.13
4780 8122 2.356135 GCAGAGAATGCGTAGGGAAAA 58.644 47.619 0.00 0.00 46.99 2.29
4781 8123 2.747446 GCAGAGAATGCGTAGGGAAAAA 59.253 45.455 0.00 0.00 46.99 1.94
4782 8124 3.426292 GCAGAGAATGCGTAGGGAAAAAC 60.426 47.826 0.00 0.00 46.99 2.43
4783 8125 3.751175 CAGAGAATGCGTAGGGAAAAACA 59.249 43.478 0.00 0.00 0.00 2.83
4784 8126 4.396166 CAGAGAATGCGTAGGGAAAAACAT 59.604 41.667 0.00 0.00 0.00 2.71
4785 8127 5.010282 AGAGAATGCGTAGGGAAAAACATT 58.990 37.500 0.00 0.00 0.00 2.71
4786 8128 6.093495 CAGAGAATGCGTAGGGAAAAACATTA 59.907 38.462 0.00 0.00 0.00 1.90
4787 8129 6.316390 AGAGAATGCGTAGGGAAAAACATTAG 59.684 38.462 0.00 0.00 0.00 1.73
4788 8130 5.357032 AGAATGCGTAGGGAAAAACATTAGG 59.643 40.000 0.00 0.00 0.00 2.69
4789 8131 4.289238 TGCGTAGGGAAAAACATTAGGA 57.711 40.909 0.00 0.00 0.00 2.94
4790 8132 4.653868 TGCGTAGGGAAAAACATTAGGAA 58.346 39.130 0.00 0.00 0.00 3.36
4791 8133 5.071370 TGCGTAGGGAAAAACATTAGGAAA 58.929 37.500 0.00 0.00 0.00 3.13
4792 8134 5.182380 TGCGTAGGGAAAAACATTAGGAAAG 59.818 40.000 0.00 0.00 0.00 2.62
4793 8135 5.413523 GCGTAGGGAAAAACATTAGGAAAGA 59.586 40.000 0.00 0.00 0.00 2.52
4794 8136 6.403309 GCGTAGGGAAAAACATTAGGAAAGAG 60.403 42.308 0.00 0.00 0.00 2.85
4795 8137 6.877322 CGTAGGGAAAAACATTAGGAAAGAGA 59.123 38.462 0.00 0.00 0.00 3.10
4796 8138 7.389607 CGTAGGGAAAAACATTAGGAAAGAGAA 59.610 37.037 0.00 0.00 0.00 2.87
4797 8139 9.074576 GTAGGGAAAAACATTAGGAAAGAGAAA 57.925 33.333 0.00 0.00 0.00 2.52
4798 8140 8.183104 AGGGAAAAACATTAGGAAAGAGAAAG 57.817 34.615 0.00 0.00 0.00 2.62
4799 8141 6.868864 GGGAAAAACATTAGGAAAGAGAAAGC 59.131 38.462 0.00 0.00 0.00 3.51
4800 8142 6.868864 GGAAAAACATTAGGAAAGAGAAAGCC 59.131 38.462 0.00 0.00 0.00 4.35
4801 8143 5.984695 AAACATTAGGAAAGAGAAAGCCC 57.015 39.130 0.00 0.00 0.00 5.19
4802 8144 4.657814 ACATTAGGAAAGAGAAAGCCCA 57.342 40.909 0.00 0.00 0.00 5.36
4803 8145 4.336280 ACATTAGGAAAGAGAAAGCCCAC 58.664 43.478 0.00 0.00 0.00 4.61
4804 8146 4.202567 ACATTAGGAAAGAGAAAGCCCACA 60.203 41.667 0.00 0.00 0.00 4.17
4805 8147 4.657814 TTAGGAAAGAGAAAGCCCACAT 57.342 40.909 0.00 0.00 0.00 3.21
4806 8148 5.772393 TTAGGAAAGAGAAAGCCCACATA 57.228 39.130 0.00 0.00 0.00 2.29
4807 8149 3.956744 AGGAAAGAGAAAGCCCACATAC 58.043 45.455 0.00 0.00 0.00 2.39
4808 8150 3.330701 AGGAAAGAGAAAGCCCACATACA 59.669 43.478 0.00 0.00 0.00 2.29
4809 8151 4.079253 GGAAAGAGAAAGCCCACATACAA 58.921 43.478 0.00 0.00 0.00 2.41
4810 8152 4.522789 GGAAAGAGAAAGCCCACATACAAA 59.477 41.667 0.00 0.00 0.00 2.83
4811 8153 5.185828 GGAAAGAGAAAGCCCACATACAAAT 59.814 40.000 0.00 0.00 0.00 2.32
4812 8154 6.377146 GGAAAGAGAAAGCCCACATACAAATA 59.623 38.462 0.00 0.00 0.00 1.40
4813 8155 7.068716 GGAAAGAGAAAGCCCACATACAAATAT 59.931 37.037 0.00 0.00 0.00 1.28
4814 8156 6.949352 AGAGAAAGCCCACATACAAATATG 57.051 37.500 0.00 0.00 43.46 1.78
4879 8221 7.999679 CAGAGAATGCATAGGGAAAAACATTA 58.000 34.615 0.00 0.00 0.00 1.90
4881 8223 7.286316 AGAGAATGCATAGGGAAAAACATTAGG 59.714 37.037 0.00 0.00 0.00 2.69
4882 8224 7.125391 AGAATGCATAGGGAAAAACATTAGGA 58.875 34.615 0.00 0.00 0.00 2.94
4885 8227 7.169158 TGCATAGGGAAAAACATTAGGAAAG 57.831 36.000 0.00 0.00 0.00 2.62
4887 8229 7.122650 TGCATAGGGAAAAACATTAGGAAAGAG 59.877 37.037 0.00 0.00 0.00 2.85
4889 8231 9.243105 CATAGGGAAAAACATTAGGAAAGAGAA 57.757 33.333 0.00 0.00 0.00 2.87
4890 8232 9.822727 ATAGGGAAAAACATTAGGAAAGAGAAA 57.177 29.630 0.00 0.00 0.00 2.52
4894 8236 5.984695 AAACATTAGGAAAGAGAAAGCCC 57.015 39.130 0.00 0.00 0.00 5.19
4896 8238 4.336280 ACATTAGGAAAGAGAAAGCCCAC 58.664 43.478 0.00 0.00 0.00 4.61
4897 8239 4.202567 ACATTAGGAAAGAGAAAGCCCACA 60.203 41.667 0.00 0.00 0.00 4.17
4898 8240 4.447138 TTAGGAAAGAGAAAGCCCACAA 57.553 40.909 0.00 0.00 0.00 3.33
4899 8241 2.868899 AGGAAAGAGAAAGCCCACAAG 58.131 47.619 0.00 0.00 0.00 3.16
4900 8242 2.443255 AGGAAAGAGAAAGCCCACAAGA 59.557 45.455 0.00 0.00 0.00 3.02
4902 8244 3.829026 GGAAAGAGAAAGCCCACAAGATT 59.171 43.478 0.00 0.00 0.00 2.40
4903 8245 4.281941 GGAAAGAGAAAGCCCACAAGATTT 59.718 41.667 0.00 0.00 0.00 2.17
4905 8247 4.379302 AGAGAAAGCCCACAAGATTTCT 57.621 40.909 4.60 4.60 42.96 2.52
4906 8248 5.505181 AGAGAAAGCCCACAAGATTTCTA 57.495 39.130 4.91 0.00 40.97 2.10
4909 8251 5.249420 AGAAAGCCCACAAGATTTCTAGTC 58.751 41.667 3.16 0.00 39.55 2.59
4911 8253 4.851639 AGCCCACAAGATTTCTAGTCAT 57.148 40.909 0.00 0.00 0.00 3.06
4914 8256 6.904626 AGCCCACAAGATTTCTAGTCATAAT 58.095 36.000 0.00 0.00 0.00 1.28
4915 8257 6.769822 AGCCCACAAGATTTCTAGTCATAATG 59.230 38.462 0.00 0.00 0.00 1.90
4916 8258 6.543831 GCCCACAAGATTTCTAGTCATAATGT 59.456 38.462 0.00 0.00 0.00 2.71
4917 8259 7.467811 GCCCACAAGATTTCTAGTCATAATGTG 60.468 40.741 9.74 9.74 35.45 3.21
4918 8260 7.554118 CCCACAAGATTTCTAGTCATAATGTGT 59.446 37.037 13.29 0.00 34.24 3.72
4944 8286 3.963383 AAAAACTAACAGCGTGGTCAG 57.037 42.857 0.00 0.00 0.00 3.51
4945 8287 1.226746 AAACTAACAGCGTGGTCAGC 58.773 50.000 0.00 0.00 0.00 4.26
4946 8288 0.105964 AACTAACAGCGTGGTCAGCA 59.894 50.000 0.00 0.00 37.01 4.41
4947 8289 0.319900 ACTAACAGCGTGGTCAGCAG 60.320 55.000 0.00 0.00 37.01 4.24
4948 8290 0.038251 CTAACAGCGTGGTCAGCAGA 60.038 55.000 0.00 0.00 37.01 4.26
4949 8291 0.038251 TAACAGCGTGGTCAGCAGAG 60.038 55.000 0.00 0.00 37.01 3.35
4950 8292 1.748329 AACAGCGTGGTCAGCAGAGA 61.748 55.000 0.00 0.00 37.01 3.10
4951 8293 1.005748 CAGCGTGGTCAGCAGAGAA 60.006 57.895 0.00 0.00 37.01 2.87
4952 8294 0.390866 CAGCGTGGTCAGCAGAGAAT 60.391 55.000 0.00 0.00 37.01 2.40
4953 8295 0.390866 AGCGTGGTCAGCAGAGAATG 60.391 55.000 0.00 0.00 37.01 2.67
4962 8304 3.760693 GCAGAGAATGCGTAGGGAA 57.239 52.632 0.00 0.00 46.99 3.97
4963 8305 2.024176 GCAGAGAATGCGTAGGGAAA 57.976 50.000 0.00 0.00 46.99 3.13
4964 8306 2.356135 GCAGAGAATGCGTAGGGAAAA 58.644 47.619 0.00 0.00 46.99 2.29
4965 8307 2.747446 GCAGAGAATGCGTAGGGAAAAA 59.253 45.455 0.00 0.00 46.99 1.94
4966 8308 3.426292 GCAGAGAATGCGTAGGGAAAAAC 60.426 47.826 0.00 0.00 46.99 2.43
4967 8309 3.751175 CAGAGAATGCGTAGGGAAAAACA 59.249 43.478 0.00 0.00 0.00 2.83
4968 8310 4.396166 CAGAGAATGCGTAGGGAAAAACAT 59.604 41.667 0.00 0.00 0.00 2.71
4969 8311 5.010282 AGAGAATGCGTAGGGAAAAACATT 58.990 37.500 0.00 0.00 0.00 2.71
4970 8312 6.093495 CAGAGAATGCGTAGGGAAAAACATTA 59.907 38.462 0.00 0.00 0.00 1.90
4971 8313 6.316390 AGAGAATGCGTAGGGAAAAACATTAG 59.684 38.462 0.00 0.00 0.00 1.73
4972 8314 5.357032 AGAATGCGTAGGGAAAAACATTAGG 59.643 40.000 0.00 0.00 0.00 2.69
4973 8315 4.289238 TGCGTAGGGAAAAACATTAGGA 57.711 40.909 0.00 0.00 0.00 2.94
4974 8316 4.653868 TGCGTAGGGAAAAACATTAGGAA 58.346 39.130 0.00 0.00 0.00 3.36
4975 8317 5.071370 TGCGTAGGGAAAAACATTAGGAAA 58.929 37.500 0.00 0.00 0.00 3.13
4976 8318 5.182380 TGCGTAGGGAAAAACATTAGGAAAG 59.818 40.000 0.00 0.00 0.00 2.62
4977 8319 5.413523 GCGTAGGGAAAAACATTAGGAAAGA 59.586 40.000 0.00 0.00 0.00 2.52
4978 8320 6.403309 GCGTAGGGAAAAACATTAGGAAAGAG 60.403 42.308 0.00 0.00 0.00 2.85
4979 8321 6.877322 CGTAGGGAAAAACATTAGGAAAGAGA 59.123 38.462 0.00 0.00 0.00 3.10
4980 8322 7.389607 CGTAGGGAAAAACATTAGGAAAGAGAA 59.610 37.037 0.00 0.00 0.00 2.87
4981 8323 9.074576 GTAGGGAAAAACATTAGGAAAGAGAAA 57.925 33.333 0.00 0.00 0.00 2.52
4982 8324 8.183104 AGGGAAAAACATTAGGAAAGAGAAAG 57.817 34.615 0.00 0.00 0.00 2.62
4983 8325 6.868864 GGGAAAAACATTAGGAAAGAGAAAGC 59.131 38.462 0.00 0.00 0.00 3.51
4984 8326 6.868864 GGAAAAACATTAGGAAAGAGAAAGCC 59.131 38.462 0.00 0.00 0.00 4.35
4985 8327 5.984695 AAACATTAGGAAAGAGAAAGCCC 57.015 39.130 0.00 0.00 0.00 5.19
4986 8328 4.657814 ACATTAGGAAAGAGAAAGCCCA 57.342 40.909 0.00 0.00 0.00 5.36
4987 8329 4.336280 ACATTAGGAAAGAGAAAGCCCAC 58.664 43.478 0.00 0.00 0.00 4.61
4988 8330 4.202567 ACATTAGGAAAGAGAAAGCCCACA 60.203 41.667 0.00 0.00 0.00 4.17
4989 8331 4.657814 TTAGGAAAGAGAAAGCCCACAT 57.342 40.909 0.00 0.00 0.00 3.21
4990 8332 5.772393 TTAGGAAAGAGAAAGCCCACATA 57.228 39.130 0.00 0.00 0.00 2.29
4991 8333 3.956744 AGGAAAGAGAAAGCCCACATAC 58.043 45.455 0.00 0.00 0.00 2.39
4992 8334 3.330701 AGGAAAGAGAAAGCCCACATACA 59.669 43.478 0.00 0.00 0.00 2.29
4997 8339 7.068716 GGAAAGAGAAAGCCCACATACAAATAT 59.931 37.037 0.00 0.00 0.00 1.28
4998 8340 6.949352 AGAGAAAGCCCACATACAAATATG 57.051 37.500 0.00 0.00 43.46 1.78
5056 8405 2.024176 GCAGAGAATGCGTAGGGAAA 57.976 50.000 0.00 0.00 46.99 3.13
5058 8407 2.747446 GCAGAGAATGCGTAGGGAAAAA 59.253 45.455 0.00 0.00 46.99 1.94
5059 8408 3.426292 GCAGAGAATGCGTAGGGAAAAAC 60.426 47.826 0.00 0.00 46.99 2.43
5060 8409 3.751175 CAGAGAATGCGTAGGGAAAAACA 59.249 43.478 0.00 0.00 0.00 2.83
5061 8410 4.396166 CAGAGAATGCGTAGGGAAAAACAT 59.604 41.667 0.00 0.00 0.00 2.71
5062 8411 5.010282 AGAGAATGCGTAGGGAAAAACATT 58.990 37.500 0.00 0.00 0.00 2.71
5063 8412 6.093495 CAGAGAATGCGTAGGGAAAAACATTA 59.907 38.462 0.00 0.00 0.00 1.90
5065 8414 5.357032 AGAATGCGTAGGGAAAAACATTAGG 59.643 40.000 0.00 0.00 0.00 2.69
5069 8418 5.182380 TGCGTAGGGAAAAACATTAGGAAAG 59.818 40.000 0.00 0.00 0.00 2.62
5071 8420 6.403309 GCGTAGGGAAAAACATTAGGAAAGAG 60.403 42.308 0.00 0.00 0.00 2.85
5072 8421 6.877322 CGTAGGGAAAAACATTAGGAAAGAGA 59.123 38.462 0.00 0.00 0.00 3.10
5073 8422 7.389607 CGTAGGGAAAAACATTAGGAAAGAGAA 59.610 37.037 0.00 0.00 0.00 2.87
5074 8423 9.074576 GTAGGGAAAAACATTAGGAAAGAGAAA 57.925 33.333 0.00 0.00 0.00 2.52
5075 8424 8.183104 AGGGAAAAACATTAGGAAAGAGAAAG 57.817 34.615 0.00 0.00 0.00 2.62
5076 8425 6.868864 GGGAAAAACATTAGGAAAGAGAAAGC 59.131 38.462 0.00 0.00 0.00 3.51
5077 8426 6.868864 GGAAAAACATTAGGAAAGAGAAAGCC 59.131 38.462 0.00 0.00 0.00 4.35
5078 8427 5.984695 AAACATTAGGAAAGAGAAAGCCC 57.015 39.130 0.00 0.00 0.00 5.19
5079 8428 4.657814 ACATTAGGAAAGAGAAAGCCCA 57.342 40.909 0.00 0.00 0.00 5.36
5080 8429 4.336280 ACATTAGGAAAGAGAAAGCCCAC 58.664 43.478 0.00 0.00 0.00 4.61
5081 8430 4.202567 ACATTAGGAAAGAGAAAGCCCACA 60.203 41.667 0.00 0.00 0.00 4.17
5082 8431 4.447138 TTAGGAAAGAGAAAGCCCACAA 57.553 40.909 0.00 0.00 0.00 3.33
5083 8432 2.868899 AGGAAAGAGAAAGCCCACAAG 58.131 47.619 0.00 0.00 0.00 3.16
5084 8433 2.443255 AGGAAAGAGAAAGCCCACAAGA 59.557 45.455 0.00 0.00 0.00 3.02
5085 8434 3.075134 AGGAAAGAGAAAGCCCACAAGAT 59.925 43.478 0.00 0.00 0.00 2.40
5086 8435 3.829026 GGAAAGAGAAAGCCCACAAGATT 59.171 43.478 0.00 0.00 0.00 2.40
5087 8436 4.281941 GGAAAGAGAAAGCCCACAAGATTT 59.718 41.667 0.00 0.00 0.00 2.17
5088 8437 5.459536 AAAGAGAAAGCCCACAAGATTTC 57.540 39.130 0.00 0.00 32.95 2.17
5089 8438 4.379302 AGAGAAAGCCCACAAGATTTCT 57.621 40.909 4.60 4.60 42.96 2.52
5090 8439 5.505181 AGAGAAAGCCCACAAGATTTCTA 57.495 39.130 4.91 0.00 40.97 2.10
5091 8440 5.495640 AGAGAAAGCCCACAAGATTTCTAG 58.504 41.667 4.91 0.00 40.97 2.43
5092 8441 5.013599 AGAGAAAGCCCACAAGATTTCTAGT 59.986 40.000 4.91 0.00 40.97 2.57
5093 8442 5.249420 AGAAAGCCCACAAGATTTCTAGTC 58.751 41.667 3.16 0.00 39.55 2.59
5094 8443 4.640771 AAGCCCACAAGATTTCTAGTCA 57.359 40.909 0.00 0.00 0.00 3.41
5095 8444 4.851639 AGCCCACAAGATTTCTAGTCAT 57.148 40.909 0.00 0.00 0.00 3.06
5096 8445 5.957771 AGCCCACAAGATTTCTAGTCATA 57.042 39.130 0.00 0.00 0.00 2.15
5097 8446 6.313519 AGCCCACAAGATTTCTAGTCATAA 57.686 37.500 0.00 0.00 0.00 1.90
5098 8447 6.904626 AGCCCACAAGATTTCTAGTCATAAT 58.095 36.000 0.00 0.00 0.00 1.28
5099 8448 6.769822 AGCCCACAAGATTTCTAGTCATAATG 59.230 38.462 0.00 0.00 0.00 1.90
5100 8449 6.543831 GCCCACAAGATTTCTAGTCATAATGT 59.456 38.462 0.00 0.00 0.00 2.71
5101 8450 7.467811 GCCCACAAGATTTCTAGTCATAATGTG 60.468 40.741 9.74 9.74 35.45 3.21
5102 8451 7.554118 CCCACAAGATTTCTAGTCATAATGTGT 59.446 37.037 13.29 0.00 34.24 3.72
5103 8452 9.599866 CCACAAGATTTCTAGTCATAATGTGTA 57.400 33.333 13.29 0.00 34.24 2.90
5185 8534 4.746535 TTTCTAGTCATGCCCGATAACA 57.253 40.909 0.00 0.00 0.00 2.41
5199 8548 2.683968 GATAACAACTCCAGCACGACA 58.316 47.619 0.00 0.00 0.00 4.35
5204 8553 1.670811 CAACTCCAGCACGACAACTTT 59.329 47.619 0.00 0.00 0.00 2.66
5205 8554 1.299541 ACTCCAGCACGACAACTTTG 58.700 50.000 0.00 0.00 0.00 2.77
5206 8555 1.134521 ACTCCAGCACGACAACTTTGA 60.135 47.619 0.00 0.00 0.00 2.69
5215 8564 6.467047 CAGCACGACAACTTTGATGAATATTC 59.533 38.462 8.60 8.60 0.00 1.75
5217 8566 7.549134 AGCACGACAACTTTGATGAATATTCTA 59.451 33.333 16.24 3.85 0.00 2.10
5265 8614 6.935741 ATAATAAAGCGTGCCTAATTGTGA 57.064 33.333 0.00 0.00 0.00 3.58
5266 8615 5.835113 AATAAAGCGTGCCTAATTGTGAT 57.165 34.783 0.00 0.00 0.00 3.06
5267 8616 3.492421 AAAGCGTGCCTAATTGTGATG 57.508 42.857 0.00 0.00 0.00 3.07
5268 8617 2.401583 AGCGTGCCTAATTGTGATGA 57.598 45.000 0.00 0.00 0.00 2.92
5269 8618 2.283298 AGCGTGCCTAATTGTGATGAG 58.717 47.619 0.00 0.00 0.00 2.90
5270 8619 1.331756 GCGTGCCTAATTGTGATGAGG 59.668 52.381 0.00 0.00 37.01 3.86
5271 8620 2.905075 CGTGCCTAATTGTGATGAGGA 58.095 47.619 0.00 0.00 36.09 3.71
5272 8621 2.868583 CGTGCCTAATTGTGATGAGGAG 59.131 50.000 0.00 0.00 36.09 3.69
5273 8622 3.430790 CGTGCCTAATTGTGATGAGGAGA 60.431 47.826 0.00 0.00 36.09 3.71
5274 8623 4.125703 GTGCCTAATTGTGATGAGGAGAG 58.874 47.826 0.00 0.00 36.09 3.20
5275 8624 3.135348 TGCCTAATTGTGATGAGGAGAGG 59.865 47.826 0.00 0.00 36.09 3.69
5276 8625 3.495806 GCCTAATTGTGATGAGGAGAGGG 60.496 52.174 0.00 0.00 36.09 4.30
5277 8626 3.969976 CCTAATTGTGATGAGGAGAGGGA 59.030 47.826 0.00 0.00 36.09 4.20
5278 8627 4.410228 CCTAATTGTGATGAGGAGAGGGAA 59.590 45.833 0.00 0.00 36.09 3.97
5279 8628 4.934797 AATTGTGATGAGGAGAGGGAAA 57.065 40.909 0.00 0.00 0.00 3.13
5280 8629 4.934797 ATTGTGATGAGGAGAGGGAAAA 57.065 40.909 0.00 0.00 0.00 2.29
5281 8630 4.934797 TTGTGATGAGGAGAGGGAAAAT 57.065 40.909 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.614241 GCTTGAGTTAGAGGGCGGGA 61.614 60.000 0.00 0.00 0.00 5.14
78 79 1.674322 GGCAAGGCGGCTTGAGTTA 60.674 57.895 44.65 0.00 36.50 2.24
112 113 4.340246 CAGCAGCAGGGCACAGGA 62.340 66.667 0.00 0.00 35.83 3.86
221 225 3.003173 CGTCTTCAGGCCCCAGGA 61.003 66.667 0.00 0.00 0.00 3.86
233 237 2.878406 AGCTTGTTATGTTGCACGTCTT 59.122 40.909 0.00 0.00 0.00 3.01
289 293 5.111293 ACCACAAATCAACTCTGCAAAAAG 58.889 37.500 0.00 0.00 0.00 2.27
302 306 2.622942 GCTCTGGACAAACCACAAATCA 59.377 45.455 0.00 0.00 44.64 2.57
347 351 5.163864 GCAATTAGCAAACAATTAGCAACCC 60.164 40.000 0.00 0.00 44.79 4.11
375 383 5.601729 AGCTAGGATCATCATTGTTCTCTGA 59.398 40.000 0.00 0.00 0.00 3.27
381 389 5.822132 AGCTAGCTAGGATCATCATTGTT 57.178 39.130 17.69 0.00 0.00 2.83
421 430 7.112122 TGTCTGGATATCAATTAGCAACTTGT 58.888 34.615 4.83 0.00 0.00 3.16
433 442 5.603813 TCATCAGGTCATGTCTGGATATCAA 59.396 40.000 4.83 0.00 33.36 2.57
435 444 5.735285 TCATCAGGTCATGTCTGGATATC 57.265 43.478 15.15 0.00 33.36 1.63
436 445 5.367644 TGTTCATCAGGTCATGTCTGGATAT 59.632 40.000 15.15 3.62 33.36 1.63
439 448 2.905736 TGTTCATCAGGTCATGTCTGGA 59.094 45.455 15.15 6.42 33.36 3.86
440 449 3.005554 GTGTTCATCAGGTCATGTCTGG 58.994 50.000 15.15 4.71 33.36 3.86
442 451 4.564782 ATGTGTTCATCAGGTCATGTCT 57.435 40.909 0.00 0.00 0.00 3.41
443 452 5.063944 GTGTATGTGTTCATCAGGTCATGTC 59.936 44.000 0.00 0.00 35.70 3.06
570 757 4.666253 GGAGCCAGGGTTGCAGCA 62.666 66.667 2.05 0.00 0.00 4.41
630 817 1.003718 GCGCCCATCCCTATACACC 60.004 63.158 0.00 0.00 0.00 4.16
688 875 3.499926 GGAACTCCTCGGAGGATATGGTA 60.500 52.174 26.22 3.21 44.81 3.25
723 910 1.527034 GCTCTCCAGCACATTGTTCA 58.473 50.000 0.00 0.00 46.06 3.18
822 1037 5.514274 AAGTCGATTGTTTGGTTTGATGT 57.486 34.783 0.00 0.00 0.00 3.06
853 1068 2.486472 AGTGAGTCAGCCTTTGATGG 57.514 50.000 0.00 0.00 38.29 3.51
940 1155 9.942850 TGACTGAAAGAAAAAGGAAAAGAAATT 57.057 25.926 0.00 0.00 37.43 1.82
978 1194 0.608640 AGTCCAGCTAAACCTGACGG 59.391 55.000 0.00 0.00 34.77 4.79
1066 1282 0.961019 AAATCAAAGAAGCAGCGCCA 59.039 45.000 2.29 0.00 0.00 5.69
1134 1408 3.005684 TCCACTGCAAATGGTGAATCAAC 59.994 43.478 14.73 0.00 38.47 3.18
1188 1462 6.430616 CCATGTTAATTCACAATGGGCTTTTT 59.569 34.615 0.00 0.00 0.00 1.94
1240 1514 6.727824 AACTTTCTGTCAATATCTGGTTCG 57.272 37.500 0.00 0.00 0.00 3.95
1276 1550 1.469251 CCGAGTTACCCGATGTCAGTG 60.469 57.143 0.00 0.00 0.00 3.66
1511 1791 5.997384 AAGGGAAATACTAGACACGACTT 57.003 39.130 0.00 0.00 0.00 3.01
1621 1904 6.015856 TGTTCTCCAAAACACACAAAAGAAGA 60.016 34.615 0.00 0.00 34.31 2.87
1784 2069 1.452773 GTCGACGATAACAACACGCAA 59.547 47.619 0.00 0.00 0.00 4.85
1995 2282 1.676006 CGCAAATGGGGGAATCACTAC 59.324 52.381 0.00 0.00 0.00 2.73
2015 2302 6.412362 ACTATCAATAGGTCTGACATGTCC 57.588 41.667 22.85 8.30 34.69 4.02
2290 2582 5.170021 GCATTCATAAACTGGCAAATGACA 58.830 37.500 9.37 0.00 0.00 3.58
2737 3087 3.728864 CGCATGGCATTTTCTGTACTGTC 60.729 47.826 0.00 0.00 0.00 3.51
2770 3121 5.562696 GCACACTACAAAAGCTGAAGCATTA 60.563 40.000 4.90 0.00 45.16 1.90
2786 3137 2.092882 GTTCCCGCGAGCACACTAC 61.093 63.158 8.23 0.00 0.00 2.73
2960 3317 9.243637 GTCACTGAGCTCAAACTCTATAATTAG 57.756 37.037 18.85 3.08 37.58 1.73
2985 3353 0.700564 ATCCACTGTCATTGGCCTGT 59.299 50.000 3.32 0.00 33.71 4.00
2986 3354 2.171237 TCTATCCACTGTCATTGGCCTG 59.829 50.000 3.32 0.00 33.71 4.85
2987 3355 2.481441 TCTATCCACTGTCATTGGCCT 58.519 47.619 3.32 0.00 33.71 5.19
2988 3356 3.498774 ATCTATCCACTGTCATTGGCC 57.501 47.619 4.33 0.00 33.71 5.36
2989 3357 4.514441 CAGAATCTATCCACTGTCATTGGC 59.486 45.833 4.33 0.00 33.71 4.52
2990 3358 5.922053 TCAGAATCTATCCACTGTCATTGG 58.078 41.667 2.77 2.77 35.18 3.16
2991 3359 7.498239 ACAATCAGAATCTATCCACTGTCATTG 59.502 37.037 0.00 0.00 0.00 2.82
2992 3360 7.571919 ACAATCAGAATCTATCCACTGTCATT 58.428 34.615 0.00 0.00 0.00 2.57
2993 3361 7.134362 ACAATCAGAATCTATCCACTGTCAT 57.866 36.000 0.00 0.00 0.00 3.06
2994 3362 6.550938 ACAATCAGAATCTATCCACTGTCA 57.449 37.500 0.00 0.00 0.00 3.58
2995 3363 7.655328 CCTAACAATCAGAATCTATCCACTGTC 59.345 40.741 0.00 0.00 0.00 3.51
3037 3405 3.831323 TGAGTTCTGGCTGATTTCCAAA 58.169 40.909 0.00 0.00 32.41 3.28
3118 3486 9.299465 GCATAATATACTAGGGTCCTATACTCC 57.701 40.741 0.00 0.00 0.00 3.85
3119 3487 9.863650 TGCATAATATACTAGGGTCCTATACTC 57.136 37.037 0.00 0.00 0.00 2.59
3123 3491 9.904732 ATCATGCATAATATACTAGGGTCCTAT 57.095 33.333 0.00 0.00 0.00 2.57
3124 3492 9.729550 AATCATGCATAATATACTAGGGTCCTA 57.270 33.333 0.00 0.00 0.00 2.94
3125 3493 8.629821 AATCATGCATAATATACTAGGGTCCT 57.370 34.615 0.00 0.00 0.00 3.85
3166 3534 8.982723 AGAGATACTAGTTTCAGCCAAATAGAA 58.017 33.333 14.67 0.00 0.00 2.10
3331 3700 2.108157 GTGACACCGGCACACTCA 59.892 61.111 15.70 1.92 36.31 3.41
3397 3766 4.272504 TCACAGCTGTTTTACTGCAACTAC 59.727 41.667 18.94 0.00 44.20 2.73
3452 3821 7.065683 AGGAAATGCAAAAGTTCGAACAAAAAT 59.934 29.630 28.78 12.13 33.59 1.82
3454 3823 5.872070 AGGAAATGCAAAAGTTCGAACAAAA 59.128 32.000 28.78 9.42 33.59 2.44
3543 3913 1.742761 AAATGAGGACATGACAGCGG 58.257 50.000 0.00 0.00 36.79 5.52
3545 3915 4.697352 ACTGTAAAATGAGGACATGACAGC 59.303 41.667 0.00 0.00 41.27 4.40
3552 3922 3.563808 GTGCACACTGTAAAATGAGGACA 59.436 43.478 13.17 0.00 30.21 4.02
3564 3934 2.159254 GGTTCATTGTTGTGCACACTGT 60.159 45.455 21.56 3.00 37.34 3.55
3565 3935 2.099592 AGGTTCATTGTTGTGCACACTG 59.900 45.455 21.56 14.49 37.39 3.66
3685 4057 7.936301 TCAAAACTTTAGCTGGGCAAAATAAAT 59.064 29.630 0.00 0.00 0.00 1.40
3862 4234 5.116084 AGGCTGAAGTAATAAAGCATGGA 57.884 39.130 0.00 0.00 37.40 3.41
3889 4261 7.334171 GCCATAGCATTTTAACCAACTGAAAAT 59.666 33.333 0.00 0.00 39.53 1.82
3908 4280 2.880890 CAATGTTCCTACAGGCCATAGC 59.119 50.000 5.01 0.00 37.77 2.97
3944 4316 7.173907 TGGTAAAATATGGTGCCAACATTTTTG 59.826 33.333 21.34 0.00 32.44 2.44
3977 4349 3.399181 GGATCCACGGACTGCCCA 61.399 66.667 6.95 0.00 34.14 5.36
3986 4358 2.202797 CTGTCCAGCGGATCCACG 60.203 66.667 13.41 0.00 32.73 4.94
4052 4424 4.214119 CGAACCTGCATCGAATAATCCAAT 59.786 41.667 1.97 0.00 42.76 3.16
4088 4460 4.836125 AAACAGAAAGTAGTGGCATGTG 57.164 40.909 0.00 0.00 0.00 3.21
4144 4516 3.027412 TGACTATCTTCTCCTGCAGGAC 58.973 50.000 32.00 18.24 39.78 3.85
4323 4695 5.878332 TTGTGTATCAGGCACTAATGTTG 57.122 39.130 0.00 0.00 36.02 3.33
4341 4713 3.655486 TGCTTGCAGGAAAATGATTGTG 58.345 40.909 0.00 0.00 0.00 3.33
4347 4719 3.655486 TCACAATGCTTGCAGGAAAATG 58.345 40.909 0.00 0.00 0.00 2.32
4367 4739 1.191489 GCCCTCTCTAGCCCCTGATC 61.191 65.000 0.00 0.00 0.00 2.92
4370 4742 2.846754 GGCCCTCTCTAGCCCCTG 60.847 72.222 0.00 0.00 43.76 4.45
4389 4761 5.771165 ACTTATCCCTTTTAAGTTTTCGGCA 59.229 36.000 0.00 0.00 36.70 5.69
4393 4765 8.967918 AGGCATACTTATCCCTTTTAAGTTTTC 58.032 33.333 1.84 0.00 39.80 2.29
4401 4773 7.948447 GGGTAAATAGGCATACTTATCCCTTTT 59.052 37.037 0.00 0.00 0.00 2.27
4411 4783 5.607171 ACTGCTAAGGGTAAATAGGCATACT 59.393 40.000 0.00 0.00 0.00 2.12
4416 4788 7.634671 TTTAAACTGCTAAGGGTAAATAGGC 57.365 36.000 0.00 0.00 0.00 3.93
4464 4837 8.706322 AACATTAGGAAATAACCAACTTGAGT 57.294 30.769 0.00 0.00 0.00 3.41
4493 4866 3.851098 ACTTAGAAGCTAAGCCGAACTG 58.149 45.455 12.73 0.00 0.00 3.16
4507 4880 9.742144 TTATATGGCCAACTTACAAACTTAGAA 57.258 29.630 10.96 0.00 0.00 2.10
4510 4883 8.410141 GCATTATATGGCCAACTTACAAACTTA 58.590 33.333 10.96 0.00 0.00 2.24
4527 4900 4.703575 ACTGGCATTGCTAGGCATTATATG 59.296 41.667 23.67 0.00 41.48 1.78
4541 4914 5.645067 TCTTCTTGTCTATTCACTGGCATTG 59.355 40.000 0.00 0.00 0.00 2.82
4545 4918 6.560253 TTTTCTTCTTGTCTATTCACTGGC 57.440 37.500 0.00 0.00 0.00 4.85
4564 4937 6.262273 TGGAGCGATAATTGGGACTATTTTTC 59.738 38.462 0.00 0.00 0.00 2.29
4565 4938 6.126409 TGGAGCGATAATTGGGACTATTTTT 58.874 36.000 0.00 0.00 0.00 1.94
4566 4939 5.690865 TGGAGCGATAATTGGGACTATTTT 58.309 37.500 0.00 0.00 0.00 1.82
4584 4957 0.884514 GCAAGGGAGAAACTTGGAGC 59.115 55.000 7.22 0.00 44.16 4.70
4588 4961 4.646572 ACTAAGAGCAAGGGAGAAACTTG 58.353 43.478 0.00 0.00 46.15 3.16
4592 4965 4.706842 ACAACTAAGAGCAAGGGAGAAA 57.293 40.909 0.00 0.00 0.00 2.52
4600 4973 2.066262 GCTGCGTACAACTAAGAGCAA 58.934 47.619 0.00 0.00 34.04 3.91
4608 4981 0.900647 AGAGGAGGCTGCGTACAACT 60.901 55.000 7.38 3.18 0.00 3.16
4622 4996 2.583441 CGACACCCAGCCAAGAGGA 61.583 63.158 0.00 0.00 36.89 3.71
4642 5016 1.073444 TCGTGACAGAGTGGTAGAGGT 59.927 52.381 0.00 0.00 0.00 3.85
4644 5018 3.075148 TCTTCGTGACAGAGTGGTAGAG 58.925 50.000 0.00 0.00 0.00 2.43
4647 5021 1.540267 GCTCTTCGTGACAGAGTGGTA 59.460 52.381 2.48 0.00 40.13 3.25
4648 5022 0.315568 GCTCTTCGTGACAGAGTGGT 59.684 55.000 2.48 0.00 40.13 4.16
4649 5023 0.389166 GGCTCTTCGTGACAGAGTGG 60.389 60.000 2.48 0.00 40.13 4.00
4650 5024 0.315251 TGGCTCTTCGTGACAGAGTG 59.685 55.000 2.48 0.00 40.13 3.51
4651 5025 1.040646 TTGGCTCTTCGTGACAGAGT 58.959 50.000 2.48 0.00 40.13 3.24
4652 5026 2.154854 TTTGGCTCTTCGTGACAGAG 57.845 50.000 0.00 0.00 40.84 3.35
4654 5028 2.872245 TCTTTTTGGCTCTTCGTGACAG 59.128 45.455 0.00 0.00 0.00 3.51
4655 5029 2.912771 TCTTTTTGGCTCTTCGTGACA 58.087 42.857 0.00 0.00 0.00 3.58
4656 5030 3.064820 TGTTCTTTTTGGCTCTTCGTGAC 59.935 43.478 0.00 0.00 0.00 3.67
4657 5031 3.275143 TGTTCTTTTTGGCTCTTCGTGA 58.725 40.909 0.00 0.00 0.00 4.35
4658 5032 3.691049 TGTTCTTTTTGGCTCTTCGTG 57.309 42.857 0.00 0.00 0.00 4.35
4660 5034 5.862924 TCTATGTTCTTTTTGGCTCTTCG 57.137 39.130 0.00 0.00 0.00 3.79
4661 5035 6.858478 GTGTTCTATGTTCTTTTTGGCTCTTC 59.142 38.462 0.00 0.00 0.00 2.87
4662 5036 6.321181 TGTGTTCTATGTTCTTTTTGGCTCTT 59.679 34.615 0.00 0.00 0.00 2.85
4663 5037 5.827797 TGTGTTCTATGTTCTTTTTGGCTCT 59.172 36.000 0.00 0.00 0.00 4.09
4664 5038 6.072112 TGTGTTCTATGTTCTTTTTGGCTC 57.928 37.500 0.00 0.00 0.00 4.70
4667 5041 7.874940 TCTCATGTGTTCTATGTTCTTTTTGG 58.125 34.615 0.00 0.00 0.00 3.28
4668 5042 9.734620 TTTCTCATGTGTTCTATGTTCTTTTTG 57.265 29.630 0.00 0.00 0.00 2.44
4669 5043 9.736023 GTTTCTCATGTGTTCTATGTTCTTTTT 57.264 29.630 0.00 0.00 0.00 1.94
4670 5044 8.902806 TGTTTCTCATGTGTTCTATGTTCTTTT 58.097 29.630 0.00 0.00 0.00 2.27
4671 5045 8.450578 TGTTTCTCATGTGTTCTATGTTCTTT 57.549 30.769 0.00 0.00 0.00 2.52
4672 5046 8.509690 CATGTTTCTCATGTGTTCTATGTTCTT 58.490 33.333 0.00 0.00 46.18 2.52
4673 5047 8.037382 CATGTTTCTCATGTGTTCTATGTTCT 57.963 34.615 0.00 0.00 46.18 3.01
4687 5061 4.157289 GTGTGAGATTGGCATGTTTCTCAT 59.843 41.667 17.32 0.00 44.50 2.90
4689 5063 3.503363 TGTGTGAGATTGGCATGTTTCTC 59.497 43.478 0.00 9.17 36.09 2.87
4761 8103 3.751175 TGTTTTTCCCTACGCATTCTCTG 59.249 43.478 0.00 0.00 0.00 3.35
4762 8104 4.015872 TGTTTTTCCCTACGCATTCTCT 57.984 40.909 0.00 0.00 0.00 3.10
4763 8105 4.965119 ATGTTTTTCCCTACGCATTCTC 57.035 40.909 0.00 0.00 0.00 2.87
4764 8106 5.357032 CCTAATGTTTTTCCCTACGCATTCT 59.643 40.000 0.00 0.00 0.00 2.40
4765 8107 5.355910 TCCTAATGTTTTTCCCTACGCATTC 59.644 40.000 0.00 0.00 0.00 2.67
4766 8108 5.258051 TCCTAATGTTTTTCCCTACGCATT 58.742 37.500 0.00 0.00 0.00 3.56
4767 8109 4.850680 TCCTAATGTTTTTCCCTACGCAT 58.149 39.130 0.00 0.00 0.00 4.73
4768 8110 4.289238 TCCTAATGTTTTTCCCTACGCA 57.711 40.909 0.00 0.00 0.00 5.24
4769 8111 5.413523 TCTTTCCTAATGTTTTTCCCTACGC 59.586 40.000 0.00 0.00 0.00 4.42
4770 8112 6.877322 TCTCTTTCCTAATGTTTTTCCCTACG 59.123 38.462 0.00 0.00 0.00 3.51
4771 8113 8.631480 TTCTCTTTCCTAATGTTTTTCCCTAC 57.369 34.615 0.00 0.00 0.00 3.18
4772 8114 9.297037 CTTTCTCTTTCCTAATGTTTTTCCCTA 57.703 33.333 0.00 0.00 0.00 3.53
4773 8115 7.255977 GCTTTCTCTTTCCTAATGTTTTTCCCT 60.256 37.037 0.00 0.00 0.00 4.20
4774 8116 6.868864 GCTTTCTCTTTCCTAATGTTTTTCCC 59.131 38.462 0.00 0.00 0.00 3.97
4775 8117 6.868864 GGCTTTCTCTTTCCTAATGTTTTTCC 59.131 38.462 0.00 0.00 0.00 3.13
4776 8118 6.868864 GGGCTTTCTCTTTCCTAATGTTTTTC 59.131 38.462 0.00 0.00 0.00 2.29
4777 8119 6.326323 TGGGCTTTCTCTTTCCTAATGTTTTT 59.674 34.615 0.00 0.00 0.00 1.94
4778 8120 5.838521 TGGGCTTTCTCTTTCCTAATGTTTT 59.161 36.000 0.00 0.00 0.00 2.43
4779 8121 5.243954 GTGGGCTTTCTCTTTCCTAATGTTT 59.756 40.000 0.00 0.00 0.00 2.83
4780 8122 4.767409 GTGGGCTTTCTCTTTCCTAATGTT 59.233 41.667 0.00 0.00 0.00 2.71
4781 8123 4.202567 TGTGGGCTTTCTCTTTCCTAATGT 60.203 41.667 0.00 0.00 0.00 2.71
4782 8124 4.335416 TGTGGGCTTTCTCTTTCCTAATG 58.665 43.478 0.00 0.00 0.00 1.90
4783 8125 4.657814 TGTGGGCTTTCTCTTTCCTAAT 57.342 40.909 0.00 0.00 0.00 1.73
4784 8126 4.657814 ATGTGGGCTTTCTCTTTCCTAA 57.342 40.909 0.00 0.00 0.00 2.69
4785 8127 4.534500 TGTATGTGGGCTTTCTCTTTCCTA 59.466 41.667 0.00 0.00 0.00 2.94
4786 8128 3.330701 TGTATGTGGGCTTTCTCTTTCCT 59.669 43.478 0.00 0.00 0.00 3.36
4787 8129 3.686016 TGTATGTGGGCTTTCTCTTTCC 58.314 45.455 0.00 0.00 0.00 3.13
4788 8130 5.705609 TTTGTATGTGGGCTTTCTCTTTC 57.294 39.130 0.00 0.00 0.00 2.62
4789 8131 7.397192 ACATATTTGTATGTGGGCTTTCTCTTT 59.603 33.333 0.61 0.00 39.05 2.52
4790 8132 6.891908 ACATATTTGTATGTGGGCTTTCTCTT 59.108 34.615 0.61 0.00 39.05 2.85
4791 8133 6.426587 ACATATTTGTATGTGGGCTTTCTCT 58.573 36.000 0.61 0.00 39.05 3.10
4792 8134 6.699575 ACATATTTGTATGTGGGCTTTCTC 57.300 37.500 0.61 0.00 39.05 2.87
4856 8198 7.285401 TCCTAATGTTTTTCCCTATGCATTCTC 59.715 37.037 3.54 0.00 0.00 2.87
4858 8200 7.346751 TCCTAATGTTTTTCCCTATGCATTC 57.653 36.000 3.54 0.00 0.00 2.67
4861 8203 6.951198 TCTTTCCTAATGTTTTTCCCTATGCA 59.049 34.615 0.00 0.00 0.00 3.96
4862 8204 7.339466 TCTCTTTCCTAATGTTTTTCCCTATGC 59.661 37.037 0.00 0.00 0.00 3.14
4867 8209 6.868864 GCTTTCTCTTTCCTAATGTTTTTCCC 59.131 38.462 0.00 0.00 0.00 3.97
4868 8210 6.868864 GGCTTTCTCTTTCCTAATGTTTTTCC 59.131 38.462 0.00 0.00 0.00 3.13
4875 8217 4.335416 TGTGGGCTTTCTCTTTCCTAATG 58.665 43.478 0.00 0.00 0.00 1.90
4879 8221 2.443255 TCTTGTGGGCTTTCTCTTTCCT 59.557 45.455 0.00 0.00 0.00 3.36
4881 8223 5.242615 AGAAATCTTGTGGGCTTTCTCTTTC 59.757 40.000 0.00 0.00 33.79 2.62
4882 8224 5.143369 AGAAATCTTGTGGGCTTTCTCTTT 58.857 37.500 0.00 0.00 33.79 2.52
4885 8227 5.249420 ACTAGAAATCTTGTGGGCTTTCTC 58.751 41.667 0.00 0.00 38.52 2.87
4887 8229 5.003804 TGACTAGAAATCTTGTGGGCTTTC 58.996 41.667 0.00 0.00 32.36 2.62
4889 8231 4.640771 TGACTAGAAATCTTGTGGGCTT 57.359 40.909 0.00 0.00 32.36 4.35
4890 8232 4.851639 ATGACTAGAAATCTTGTGGGCT 57.148 40.909 0.00 0.00 32.36 5.19
4924 8266 2.032924 GCTGACCACGCTGTTAGTTTTT 59.967 45.455 0.00 0.00 0.00 1.94
4925 8267 1.602377 GCTGACCACGCTGTTAGTTTT 59.398 47.619 0.00 0.00 0.00 2.43
4926 8268 1.226746 GCTGACCACGCTGTTAGTTT 58.773 50.000 0.00 0.00 0.00 2.66
4930 8272 0.038251 CTCTGCTGACCACGCTGTTA 60.038 55.000 0.00 0.00 0.00 2.41
4933 8275 0.390866 ATTCTCTGCTGACCACGCTG 60.391 55.000 0.00 0.00 0.00 5.18
4934 8276 0.390866 CATTCTCTGCTGACCACGCT 60.391 55.000 0.00 0.00 0.00 5.07
4935 8277 2.084844 CATTCTCTGCTGACCACGC 58.915 57.895 0.00 0.00 0.00 5.34
4945 8287 3.751175 TGTTTTTCCCTACGCATTCTCTG 59.249 43.478 0.00 0.00 0.00 3.35
4946 8288 4.015872 TGTTTTTCCCTACGCATTCTCT 57.984 40.909 0.00 0.00 0.00 3.10
4947 8289 4.965119 ATGTTTTTCCCTACGCATTCTC 57.035 40.909 0.00 0.00 0.00 2.87
4948 8290 5.357032 CCTAATGTTTTTCCCTACGCATTCT 59.643 40.000 0.00 0.00 0.00 2.40
4949 8291 5.355910 TCCTAATGTTTTTCCCTACGCATTC 59.644 40.000 0.00 0.00 0.00 2.67
4950 8292 5.258051 TCCTAATGTTTTTCCCTACGCATT 58.742 37.500 0.00 0.00 0.00 3.56
4951 8293 4.850680 TCCTAATGTTTTTCCCTACGCAT 58.149 39.130 0.00 0.00 0.00 4.73
4952 8294 4.289238 TCCTAATGTTTTTCCCTACGCA 57.711 40.909 0.00 0.00 0.00 5.24
4953 8295 5.413523 TCTTTCCTAATGTTTTTCCCTACGC 59.586 40.000 0.00 0.00 0.00 4.42
4954 8296 6.877322 TCTCTTTCCTAATGTTTTTCCCTACG 59.123 38.462 0.00 0.00 0.00 3.51
4955 8297 8.631480 TTCTCTTTCCTAATGTTTTTCCCTAC 57.369 34.615 0.00 0.00 0.00 3.18
4956 8298 9.297037 CTTTCTCTTTCCTAATGTTTTTCCCTA 57.703 33.333 0.00 0.00 0.00 3.53
4957 8299 7.255977 GCTTTCTCTTTCCTAATGTTTTTCCCT 60.256 37.037 0.00 0.00 0.00 4.20
4958 8300 6.868864 GCTTTCTCTTTCCTAATGTTTTTCCC 59.131 38.462 0.00 0.00 0.00 3.97
4959 8301 6.868864 GGCTTTCTCTTTCCTAATGTTTTTCC 59.131 38.462 0.00 0.00 0.00 3.13
4960 8302 6.868864 GGGCTTTCTCTTTCCTAATGTTTTTC 59.131 38.462 0.00 0.00 0.00 2.29
4961 8303 6.326323 TGGGCTTTCTCTTTCCTAATGTTTTT 59.674 34.615 0.00 0.00 0.00 1.94
4962 8304 5.838521 TGGGCTTTCTCTTTCCTAATGTTTT 59.161 36.000 0.00 0.00 0.00 2.43
4963 8305 5.243954 GTGGGCTTTCTCTTTCCTAATGTTT 59.756 40.000 0.00 0.00 0.00 2.83
4964 8306 4.767409 GTGGGCTTTCTCTTTCCTAATGTT 59.233 41.667 0.00 0.00 0.00 2.71
4965 8307 4.202567 TGTGGGCTTTCTCTTTCCTAATGT 60.203 41.667 0.00 0.00 0.00 2.71
4966 8308 4.335416 TGTGGGCTTTCTCTTTCCTAATG 58.665 43.478 0.00 0.00 0.00 1.90
4967 8309 4.657814 TGTGGGCTTTCTCTTTCCTAAT 57.342 40.909 0.00 0.00 0.00 1.73
4968 8310 4.657814 ATGTGGGCTTTCTCTTTCCTAA 57.342 40.909 0.00 0.00 0.00 2.69
4969 8311 4.534500 TGTATGTGGGCTTTCTCTTTCCTA 59.466 41.667 0.00 0.00 0.00 2.94
4970 8312 3.330701 TGTATGTGGGCTTTCTCTTTCCT 59.669 43.478 0.00 0.00 0.00 3.36
4971 8313 3.686016 TGTATGTGGGCTTTCTCTTTCC 58.314 45.455 0.00 0.00 0.00 3.13
4972 8314 5.705609 TTTGTATGTGGGCTTTCTCTTTC 57.294 39.130 0.00 0.00 0.00 2.62
4973 8315 7.397192 ACATATTTGTATGTGGGCTTTCTCTTT 59.603 33.333 0.61 0.00 39.05 2.52
4974 8316 6.891908 ACATATTTGTATGTGGGCTTTCTCTT 59.108 34.615 0.61 0.00 39.05 2.85
4975 8317 6.426587 ACATATTTGTATGTGGGCTTTCTCT 58.573 36.000 0.61 0.00 39.05 3.10
4976 8318 6.699575 ACATATTTGTATGTGGGCTTTCTC 57.300 37.500 0.61 0.00 39.05 2.87
5042 8391 5.355910 TCCTAATGTTTTTCCCTACGCATTC 59.644 40.000 0.00 0.00 0.00 2.67
5048 8397 8.631480 TTCTCTTTCCTAATGTTTTTCCCTAC 57.369 34.615 0.00 0.00 0.00 3.18
5052 8401 6.868864 GGCTTTCTCTTTCCTAATGTTTTTCC 59.131 38.462 0.00 0.00 0.00 3.13
5054 8403 6.326323 TGGGCTTTCTCTTTCCTAATGTTTTT 59.674 34.615 0.00 0.00 0.00 1.94
5056 8405 5.243954 GTGGGCTTTCTCTTTCCTAATGTTT 59.756 40.000 0.00 0.00 0.00 2.83
5058 8407 4.202567 TGTGGGCTTTCTCTTTCCTAATGT 60.203 41.667 0.00 0.00 0.00 2.71
5059 8408 4.335416 TGTGGGCTTTCTCTTTCCTAATG 58.665 43.478 0.00 0.00 0.00 1.90
5060 8409 4.657814 TGTGGGCTTTCTCTTTCCTAAT 57.342 40.909 0.00 0.00 0.00 1.73
5061 8410 4.104102 TCTTGTGGGCTTTCTCTTTCCTAA 59.896 41.667 0.00 0.00 0.00 2.69
5062 8411 3.650942 TCTTGTGGGCTTTCTCTTTCCTA 59.349 43.478 0.00 0.00 0.00 2.94
5063 8412 2.443255 TCTTGTGGGCTTTCTCTTTCCT 59.557 45.455 0.00 0.00 0.00 3.36
5065 8414 5.242615 AGAAATCTTGTGGGCTTTCTCTTTC 59.757 40.000 0.00 0.00 33.79 2.62
5069 8418 5.249420 ACTAGAAATCTTGTGGGCTTTCTC 58.751 41.667 0.00 0.00 38.52 2.87
5071 8420 5.003804 TGACTAGAAATCTTGTGGGCTTTC 58.996 41.667 0.00 0.00 32.36 2.62
5072 8421 4.985538 TGACTAGAAATCTTGTGGGCTTT 58.014 39.130 0.00 0.00 32.36 3.51
5073 8422 4.640771 TGACTAGAAATCTTGTGGGCTT 57.359 40.909 0.00 0.00 32.36 4.35
5074 8423 4.851639 ATGACTAGAAATCTTGTGGGCT 57.148 40.909 0.00 0.00 32.36 5.19
5075 8424 6.543831 ACATTATGACTAGAAATCTTGTGGGC 59.456 38.462 0.00 0.00 32.36 5.36
5076 8425 7.554118 ACACATTATGACTAGAAATCTTGTGGG 59.446 37.037 17.99 5.95 36.08 4.61
5077 8426 8.498054 ACACATTATGACTAGAAATCTTGTGG 57.502 34.615 17.99 8.81 36.08 4.17
5108 8457 1.600485 CCGACCACGCTGTTAGTTTTT 59.400 47.619 0.00 0.00 38.29 1.94
5109 8458 1.223187 CCGACCACGCTGTTAGTTTT 58.777 50.000 0.00 0.00 38.29 2.43
5110 8459 1.226030 GCCGACCACGCTGTTAGTTT 61.226 55.000 0.00 0.00 38.29 2.66
5111 8460 1.666872 GCCGACCACGCTGTTAGTT 60.667 57.895 0.00 0.00 38.29 2.24
5112 8461 2.048503 GCCGACCACGCTGTTAGT 60.049 61.111 0.00 0.00 38.29 2.24
5113 8462 2.048597 TGCCGACCACGCTGTTAG 60.049 61.111 0.00 0.00 38.29 2.34
5114 8463 2.048597 CTGCCGACCACGCTGTTA 60.049 61.111 0.00 0.00 38.29 2.41
5115 8464 4.988598 CCTGCCGACCACGCTGTT 62.989 66.667 0.00 0.00 38.29 3.16
5117 8466 3.958147 AATCCTGCCGACCACGCTG 62.958 63.158 0.00 0.00 38.29 5.18
5118 8467 3.665675 GAATCCTGCCGACCACGCT 62.666 63.158 0.00 0.00 38.29 5.07
5185 8534 1.670811 CAAAGTTGTCGTGCTGGAGTT 59.329 47.619 0.00 0.00 0.00 3.01
5240 8589 8.439993 TCACAATTAGGCACGCTTTATTATTA 57.560 30.769 0.00 0.00 0.00 0.98
5241 8590 7.328277 TCACAATTAGGCACGCTTTATTATT 57.672 32.000 0.00 0.00 0.00 1.40
5243 8592 6.540551 TCATCACAATTAGGCACGCTTTATTA 59.459 34.615 0.00 0.00 0.00 0.98
5244 8593 5.356751 TCATCACAATTAGGCACGCTTTATT 59.643 36.000 0.00 0.00 0.00 1.40
5245 8594 4.881273 TCATCACAATTAGGCACGCTTTAT 59.119 37.500 0.00 0.00 0.00 1.40
5246 8595 4.257731 TCATCACAATTAGGCACGCTTTA 58.742 39.130 0.00 0.00 0.00 1.85
5247 8596 3.081061 TCATCACAATTAGGCACGCTTT 58.919 40.909 0.00 0.00 0.00 3.51
5248 8597 2.679837 CTCATCACAATTAGGCACGCTT 59.320 45.455 0.00 0.00 0.00 4.68
5249 8598 2.283298 CTCATCACAATTAGGCACGCT 58.717 47.619 0.00 0.00 0.00 5.07
5250 8599 1.331756 CCTCATCACAATTAGGCACGC 59.668 52.381 0.00 0.00 0.00 5.34
5251 8600 2.868583 CTCCTCATCACAATTAGGCACG 59.131 50.000 0.00 0.00 0.00 5.34
5252 8601 4.125703 CTCTCCTCATCACAATTAGGCAC 58.874 47.826 0.00 0.00 0.00 5.01
5253 8602 3.135348 CCTCTCCTCATCACAATTAGGCA 59.865 47.826 0.00 0.00 0.00 4.75
5254 8603 3.495806 CCCTCTCCTCATCACAATTAGGC 60.496 52.174 0.00 0.00 0.00 3.93
5255 8604 3.969976 TCCCTCTCCTCATCACAATTAGG 59.030 47.826 0.00 0.00 0.00 2.69
5256 8605 5.620738 TTCCCTCTCCTCATCACAATTAG 57.379 43.478 0.00 0.00 0.00 1.73
5257 8606 6.387192 TTTTCCCTCTCCTCATCACAATTA 57.613 37.500 0.00 0.00 0.00 1.40
5258 8607 4.934797 TTTCCCTCTCCTCATCACAATT 57.065 40.909 0.00 0.00 0.00 2.32
5259 8608 4.934797 TTTTCCCTCTCCTCATCACAAT 57.065 40.909 0.00 0.00 0.00 2.71
5260 8609 4.934797 ATTTTCCCTCTCCTCATCACAA 57.065 40.909 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.