Multiple sequence alignment - TraesCS3B01G367500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G367500 chr3B 100.000 8261 0 0 1 8261 579446183 579454443 0.000000e+00 15256.0
1 TraesCS3B01G367500 chr3B 79.720 715 103 28 2892 3581 579448266 579448963 5.800000e-131 479.0
2 TraesCS3B01G367500 chr3B 79.720 715 103 28 2084 2781 579449074 579449763 5.800000e-131 479.0
3 TraesCS3B01G367500 chr3B 92.553 94 7 0 5337 5430 749683504 749683597 1.450000e-27 135.0
4 TraesCS3B01G367500 chr3B 81.373 102 15 3 896 994 62756625 62756525 6.870000e-11 80.5
5 TraesCS3B01G367500 chr3D 90.715 2617 146 43 2776 5348 442171403 442173966 0.000000e+00 3397.0
6 TraesCS3B01G367500 chr3D 92.012 2241 122 30 5429 7645 442173963 442176170 0.000000e+00 3094.0
7 TraesCS3B01G367500 chr3D 89.317 1142 79 22 1402 2538 442170074 442171177 0.000000e+00 1393.0
8 TraesCS3B01G367500 chr3D 86.022 1159 99 30 1 1118 442168424 442169560 0.000000e+00 1184.0
9 TraesCS3B01G367500 chr3D 87.071 495 35 7 7727 8220 442176369 442176835 4.390000e-147 532.0
10 TraesCS3B01G367500 chr3D 94.268 314 9 5 1120 1424 442169750 442170063 9.710000e-129 472.0
11 TraesCS3B01G367500 chr3D 76.756 783 113 38 2023 2781 442171444 442172181 2.820000e-99 374.0
12 TraesCS3B01G367500 chr3D 78.179 582 74 29 2776 3336 442170620 442171169 1.030000e-83 322.0
13 TraesCS3B01G367500 chr3D 89.266 177 18 1 2605 2781 442171184 442171359 3.880000e-53 220.0
14 TraesCS3B01G367500 chr3D 84.762 105 14 1 899 1001 597142889 597142993 4.080000e-18 104.0
15 TraesCS3B01G367500 chr3A 92.879 2247 102 28 5429 7645 583243755 583245973 0.000000e+00 3210.0
16 TraesCS3B01G367500 chr3A 89.080 2619 152 59 2783 5348 583241221 583243758 0.000000e+00 3129.0
17 TraesCS3B01G367500 chr3A 83.911 1672 149 57 1167 2781 583240384 583241992 0.000000e+00 1487.0
18 TraesCS3B01G367500 chr3A 87.044 548 33 12 7719 8259 583246230 583246746 1.190000e-162 584.0
19 TraesCS3B01G367500 chr3A 86.116 569 46 12 1 542 583239150 583239712 4.300000e-162 582.0
20 TraesCS3B01G367500 chr3A 80.645 527 54 24 620 1114 583239752 583240262 1.690000e-96 364.0
21 TraesCS3B01G367500 chr3A 82.576 132 20 3 906 1035 77470021 77469891 6.780000e-21 113.0
22 TraesCS3B01G367500 chr1D 72.822 861 189 33 5888 6725 403729582 403728744 1.380000e-62 252.0
23 TraesCS3B01G367500 chr1D 81.061 132 15 6 905 1034 471837585 471837462 6.820000e-16 97.1
24 TraesCS3B01G367500 chr1B 72.390 862 191 33 5888 6725 543180298 543179460 6.450000e-56 230.0
25 TraesCS3B01G367500 chr1B 84.848 66 10 0 4822 4887 616136525 616136460 5.350000e-07 67.6
26 TraesCS3B01G367500 chr7B 82.353 204 34 2 4714 4916 509569111 509568909 8.520000e-40 176.0
27 TraesCS3B01G367500 chr7D 81.863 204 35 2 4714 4916 483923939 483923737 3.960000e-38 171.0
28 TraesCS3B01G367500 chr7A 80.882 204 37 2 4714 4916 550303419 550303217 8.580000e-35 159.0
29 TraesCS3B01G367500 chr7A 91.111 45 2 2 296 340 624625277 624625235 8.950000e-05 60.2
30 TraesCS3B01G367500 chr1A 93.939 99 4 2 5341 5438 58166617 58166714 1.860000e-31 148.0
31 TraesCS3B01G367500 chr1A 95.455 88 4 0 5345 5432 186714746 186714659 3.110000e-29 141.0
32 TraesCS3B01G367500 chr1A 92.157 51 2 1 933 981 3225639 3225589 4.140000e-08 71.3
33 TraesCS3B01G367500 chr5A 94.681 94 3 2 5338 5430 595082538 595082630 2.400000e-30 145.0
34 TraesCS3B01G367500 chr5A 91.919 99 8 0 5344 5442 126275632 126275730 1.120000e-28 139.0
35 TraesCS3B01G367500 chr5A 88.182 110 10 3 5337 5444 394333247 394333355 2.420000e-25 128.0
36 TraesCS3B01G367500 chr6A 94.444 90 4 1 5345 5434 74241744 74241832 4.020000e-28 137.0
37 TraesCS3B01G367500 chr6A 100.000 32 0 0 310 341 324283161 324283130 8.950000e-05 60.2
38 TraesCS3B01G367500 chr6B 91.000 100 9 0 5344 5443 132894266 132894365 1.450000e-27 135.0
39 TraesCS3B01G367500 chr5D 89.623 106 8 3 5336 5440 333986365 333986468 1.870000e-26 132.0
40 TraesCS3B01G367500 chr5D 89.362 47 5 0 293 339 530608269 530608315 8.950000e-05 60.2
41 TraesCS3B01G367500 chr4D 81.343 134 20 3 914 1043 122700880 122700748 4.080000e-18 104.0
42 TraesCS3B01G367500 chr4D 91.489 47 4 0 2547 2593 442169878 442169832 1.920000e-06 65.8
43 TraesCS3B01G367500 chr4D 94.595 37 2 0 304 340 48712371 48712335 3.220000e-04 58.4
44 TraesCS3B01G367500 chr2B 80.556 108 19 2 4822 4928 663898897 663899003 1.910000e-11 82.4
45 TraesCS3B01G367500 chr2B 96.774 31 1 0 2544 2574 384396424 384396454 1.500000e-02 52.8
46 TraesCS3B01G367500 chr5B 88.525 61 6 1 901 961 604866575 604866634 1.150000e-08 73.1
47 TraesCS3B01G367500 chr5B 94.444 36 2 0 304 339 680823709 680823674 1.000000e-03 56.5
48 TraesCS3B01G367500 chr6D 91.667 48 2 2 294 340 242634289 242634243 1.920000e-06 65.8
49 TraesCS3B01G367500 chr6D 94.595 37 2 0 304 340 21613096 21613060 3.220000e-04 58.4
50 TraesCS3B01G367500 chr6D 97.059 34 1 0 2549 2582 363317814 363317847 3.220000e-04 58.4
51 TraesCS3B01G367500 chr2D 89.796 49 5 0 2547 2595 606702572 606702524 6.920000e-06 63.9
52 TraesCS3B01G367500 chr2D 85.484 62 6 1 2549 2610 574602475 574602533 2.490000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G367500 chr3B 579446183 579454443 8260 False 15256.000000 15256 100.000000 1 8261 1 chr3B.!!$F1 8260
1 TraesCS3B01G367500 chr3B 579448266 579449763 1497 False 479.000000 479 79.720000 2084 3581 2 chr3B.!!$F3 1497
2 TraesCS3B01G367500 chr3D 442168424 442176835 8411 False 1220.888889 3397 87.067333 1 8220 9 chr3D.!!$F2 8219
3 TraesCS3B01G367500 chr3A 583239150 583246746 7596 False 1559.333333 3210 86.612500 1 8259 6 chr3A.!!$F1 8258
4 TraesCS3B01G367500 chr1D 403728744 403729582 838 True 252.000000 252 72.822000 5888 6725 1 chr1D.!!$R1 837
5 TraesCS3B01G367500 chr1B 543179460 543180298 838 True 230.000000 230 72.390000 5888 6725 1 chr1B.!!$R1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 387 0.109597 GGATGTTTTCGTGCCTGCAG 60.110 55.000 6.78 6.78 0.00 4.41 F
1172 1430 0.108138 ACATGTACCAAGCCTCGCTC 60.108 55.000 0.00 0.00 38.25 5.03 F
1813 2121 0.737219 GGCCGCGTCTCTTAGAGTAA 59.263 55.000 9.25 0.00 0.00 2.24 F
1815 2123 1.401199 GCCGCGTCTCTTAGAGTAACT 59.599 52.381 9.25 0.00 0.00 2.24 F
1816 2124 2.539344 GCCGCGTCTCTTAGAGTAACTC 60.539 54.545 9.25 0.00 0.00 3.01 F
1858 2168 2.680577 GAACCACGTAACACCCTGTAG 58.319 52.381 0.00 0.00 0.00 2.74 F
2013 2352 5.106038 TGCATGATGATTGTTTGAGAAGTCC 60.106 40.000 0.00 0.00 0.00 3.85 F
2052 2392 5.116882 ACTAGGAATTTTGTGAGCGGATAC 58.883 41.667 0.00 0.00 0.00 2.24 F
4180 4611 6.428159 GTCTAGTGGTTTGATCTGTCAATTGT 59.572 38.462 5.13 0.00 43.49 2.71 F
5355 5816 0.331954 TTCAGCTCTACTCCCTCCGT 59.668 55.000 0.00 0.00 0.00 4.69 F
6311 6793 0.382515 CTCCTCGGTCGATCAGTTCC 59.617 60.000 0.00 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1509 0.315568 GTCACCACTGCTTCGTCTCT 59.684 55.000 0.00 0.0 0.00 3.10 R
2052 2392 1.151668 CTCCTGGTGAGCGTTTTGAG 58.848 55.000 0.00 0.0 33.47 3.02 R
3625 4044 2.791256 CAACGCTATTGGGCACGG 59.209 61.111 0.00 0.0 0.00 4.94 R
3806 4232 4.837860 GGATCTCTCTCTCTCTCTCTCTCT 59.162 50.000 0.00 0.0 0.00 3.10 R
3903 4333 4.069869 GGAGCTGAGCTGCAACAA 57.930 55.556 21.41 0.0 46.16 2.83 R
4025 4455 4.101448 AGCGCCCCAGATCACCAC 62.101 66.667 2.29 0.0 0.00 4.16 R
4180 4611 3.650950 GGGCTGGGCTTGTCCTCA 61.651 66.667 0.00 0.0 34.39 3.86 R
4193 4624 2.177888 AGGTGAAAAAGAGGAAAGGGCT 59.822 45.455 0.00 0.0 0.00 5.19 R
6013 6492 0.329261 TGAAATCACTGGAGCCCTGG 59.671 55.000 0.00 0.0 0.00 4.45 R
6598 7080 0.246635 ACTCCGATTTCACTGACGGG 59.753 55.000 0.00 0.0 44.57 5.28 R
7914 8654 0.179468 TAAATAGTGTGCGCCCTCCC 59.821 55.000 4.18 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.059120 GTCAGCTATACGTGCGATAGACA 60.059 47.826 7.82 0.00 39.76 3.41
38 39 0.885879 TGCGATAGACAGTGACGGTT 59.114 50.000 0.00 0.00 39.76 4.44
48 49 1.455786 CAGTGACGGTTTGCTTAGACG 59.544 52.381 0.00 0.00 0.00 4.18
55 56 2.280628 GGTTTGCTTAGACGGATCCAG 58.719 52.381 13.41 7.30 0.00 3.86
109 111 0.819582 GGTCAACGTTATCCCCTCGA 59.180 55.000 0.00 0.00 0.00 4.04
138 140 6.441274 TCGTCCAAATGTATATACGTCCTTC 58.559 40.000 8.05 0.00 0.00 3.46
139 141 6.263842 TCGTCCAAATGTATATACGTCCTTCT 59.736 38.462 8.05 0.00 0.00 2.85
140 142 6.581542 CGTCCAAATGTATATACGTCCTTCTC 59.418 42.308 8.05 0.00 0.00 2.87
157 159 1.754803 TCTCCTCATCGGTGCGTATTT 59.245 47.619 0.00 0.00 0.00 1.40
279 301 0.867746 GAAGATGAGCACGCACACAA 59.132 50.000 0.00 0.00 0.00 3.33
283 305 2.095567 AGATGAGCACGCACACAATTTC 60.096 45.455 0.00 0.00 0.00 2.17
285 307 0.310543 GAGCACGCACACAATTTCCA 59.689 50.000 0.00 0.00 0.00 3.53
308 332 7.453439 TCCATTTCAAGATATACCTCATCCGTA 59.547 37.037 0.00 0.00 0.00 4.02
309 333 8.260818 CCATTTCAAGATATACCTCATCCGTAT 58.739 37.037 0.00 0.00 0.00 3.06
329 353 9.701098 TCCGTATCATAATATAAGAGCGTTTTT 57.299 29.630 0.00 0.00 0.00 1.94
344 368 2.222640 CGTTTTTGATACTACACCGCCG 60.223 50.000 0.00 0.00 0.00 6.46
358 382 2.178273 GCCGGATGTTTTCGTGCC 59.822 61.111 5.05 0.00 0.00 5.01
359 383 2.332654 GCCGGATGTTTTCGTGCCT 61.333 57.895 5.05 0.00 0.00 4.75
360 384 1.501741 CCGGATGTTTTCGTGCCTG 59.498 57.895 0.00 0.00 0.00 4.85
361 385 1.154225 CGGATGTTTTCGTGCCTGC 60.154 57.895 0.00 0.00 0.00 4.85
362 386 1.851021 CGGATGTTTTCGTGCCTGCA 61.851 55.000 0.00 0.00 0.00 4.41
363 387 0.109597 GGATGTTTTCGTGCCTGCAG 60.110 55.000 6.78 6.78 0.00 4.41
364 388 0.593128 GATGTTTTCGTGCCTGCAGT 59.407 50.000 13.81 0.00 0.00 4.40
392 417 3.065233 GCATGAACTTGCACGATCCATAA 59.935 43.478 0.00 0.00 42.31 1.90
476 507 2.127118 GTGCAGTGACACGCATGC 60.127 61.111 21.80 16.62 40.89 4.06
477 508 2.591144 TGCAGTGACACGCATGCA 60.591 55.556 19.57 14.91 45.82 3.96
478 509 1.967494 TGCAGTGACACGCATGCAT 60.967 52.632 19.57 0.00 43.34 3.96
479 510 1.513373 GCAGTGACACGCATGCATG 60.513 57.895 22.70 22.70 38.54 4.06
514 545 0.179166 TACGGCTTTAGCGTGTACCG 60.179 55.000 8.63 8.63 45.86 4.02
535 566 4.436852 CCGCCAGTACATGTAATTTGTCAC 60.437 45.833 7.25 0.00 0.00 3.67
551 582 2.040544 CACACGGTTCCCCTGATGC 61.041 63.158 0.00 0.00 0.00 3.91
573 604 1.608336 TCAAGTCGATCCACCGGGT 60.608 57.895 6.32 0.00 34.93 5.28
589 624 1.153958 GGTACTCCGCGTGTGGTAC 60.154 63.158 4.92 15.64 35.27 3.34
595 630 2.433664 CGCGTGTGGTACTTCCCC 60.434 66.667 0.00 0.00 34.77 4.81
679 714 0.383231 ACTACCAGGTACGTATGCGC 59.617 55.000 0.00 0.00 42.83 6.09
697 733 2.888534 GCGCGGGCGTCTGAATTA 60.889 61.111 9.31 0.00 42.09 1.40
775 820 1.574134 GTGTGTTTCGTTCCTCCGAA 58.426 50.000 0.00 0.00 44.43 4.30
776 821 1.525619 GTGTGTTTCGTTCCTCCGAAG 59.474 52.381 0.00 0.00 46.35 3.79
777 822 1.409790 TGTGTTTCGTTCCTCCGAAGA 59.590 47.619 0.00 0.00 46.35 2.87
779 824 3.064931 GTGTTTCGTTCCTCCGAAGAAT 58.935 45.455 0.00 0.00 46.35 2.40
780 825 3.123116 GTGTTTCGTTCCTCCGAAGAATC 59.877 47.826 0.00 0.00 46.35 2.52
781 826 3.006537 TGTTTCGTTCCTCCGAAGAATCT 59.993 43.478 0.00 0.00 46.35 2.40
824 872 3.256960 AGGTCCACGTGGCCCAAT 61.257 61.111 34.44 14.17 35.16 3.16
859 908 1.070577 CACAGTACAACGCAAGCACTC 60.071 52.381 0.00 0.00 45.62 3.51
866 915 6.640907 CAGTACAACGCAAGCACTCATATATA 59.359 38.462 0.00 0.00 45.62 0.86
867 916 7.169140 CAGTACAACGCAAGCACTCATATATAA 59.831 37.037 0.00 0.00 45.62 0.98
868 917 6.918892 ACAACGCAAGCACTCATATATAAA 57.081 33.333 0.00 0.00 45.62 1.40
871 920 5.611374 ACGCAAGCACTCATATATAAAGGT 58.389 37.500 0.00 0.00 45.62 3.50
875 924 8.808529 CGCAAGCACTCATATATAAAGGTATAC 58.191 37.037 0.00 0.00 0.00 1.47
892 941 9.998106 AAAGGTATACACTCATCGCTATAAATT 57.002 29.630 5.01 0.00 0.00 1.82
893 942 9.640963 AAGGTATACACTCATCGCTATAAATTC 57.359 33.333 5.01 0.00 0.00 2.17
895 944 9.587772 GGTATACACTCATCGCTATAAATTCAT 57.412 33.333 5.01 0.00 0.00 2.57
902 951 7.819900 ACTCATCGCTATAAATTCATCTTACCC 59.180 37.037 0.00 0.00 0.00 3.69
903 952 7.676004 TCATCGCTATAAATTCATCTTACCCA 58.324 34.615 0.00 0.00 0.00 4.51
905 954 9.599866 CATCGCTATAAATTCATCTTACCCATA 57.400 33.333 0.00 0.00 0.00 2.74
907 956 9.599866 TCGCTATAAATTCATCTTACCCATATG 57.400 33.333 0.00 0.00 0.00 1.78
908 957 9.599866 CGCTATAAATTCATCTTACCCATATGA 57.400 33.333 3.65 0.00 0.00 2.15
941 1002 4.780021 AGAGACTGAACCAACATACCATCT 59.220 41.667 0.00 0.00 0.00 2.90
957 1018 8.041323 ACATACCATCTTGAGATTTTACGAAGT 58.959 33.333 0.00 0.00 37.29 3.01
960 1021 6.369065 ACCATCTTGAGATTTTACGAAGTCAC 59.631 38.462 0.00 0.00 35.39 3.67
964 1027 8.107399 TCTTGAGATTTTACGAAGTCACTAGA 57.893 34.615 0.00 0.00 43.93 2.43
997 1061 1.080025 CGAAACGTCTCCTCCCACC 60.080 63.158 0.00 0.00 0.00 4.61
998 1062 1.080025 GAAACGTCTCCTCCCACCG 60.080 63.158 0.00 0.00 0.00 4.94
1001 1065 0.903454 AACGTCTCCTCCCACCGAAT 60.903 55.000 0.00 0.00 0.00 3.34
1043 1108 6.407299 CCTGCAATAAATCCAGGTTAAATGCT 60.407 38.462 10.12 0.00 40.92 3.79
1044 1109 6.945218 TGCAATAAATCCAGGTTAAATGCTT 58.055 32.000 10.12 0.00 32.67 3.91
1053 1118 6.672593 TCCAGGTTAAATGCTTATTCCATCT 58.327 36.000 0.00 0.00 0.00 2.90
1062 1127 3.070734 TGCTTATTCCATCTGCTCCTCTC 59.929 47.826 0.00 0.00 0.00 3.20
1068 1133 3.947868 TCCATCTGCTCCTCTCTTTTTG 58.052 45.455 0.00 0.00 0.00 2.44
1069 1134 3.328931 TCCATCTGCTCCTCTCTTTTTGT 59.671 43.478 0.00 0.00 0.00 2.83
1070 1135 3.688673 CCATCTGCTCCTCTCTTTTTGTC 59.311 47.826 0.00 0.00 0.00 3.18
1071 1136 3.409026 TCTGCTCCTCTCTTTTTGTCC 57.591 47.619 0.00 0.00 0.00 4.02
1072 1137 2.039084 TCTGCTCCTCTCTTTTTGTCCC 59.961 50.000 0.00 0.00 0.00 4.46
1074 1139 1.002087 GCTCCTCTCTTTTTGTCCCGA 59.998 52.381 0.00 0.00 0.00 5.14
1075 1140 2.355209 GCTCCTCTCTTTTTGTCCCGAT 60.355 50.000 0.00 0.00 0.00 4.18
1118 1183 9.837681 TCCATATGAATGAATAGGGTTAGAGTA 57.162 33.333 3.65 0.00 35.81 2.59
1137 1391 1.299541 AAGTGAACTTGTGCACGAGG 58.700 50.000 32.56 18.05 39.88 4.63
1163 1417 0.320050 TCGCAGCAGACATGTACCAA 59.680 50.000 0.00 0.00 0.00 3.67
1168 1422 1.065854 AGCAGACATGTACCAAGCCTC 60.066 52.381 0.00 0.00 0.00 4.70
1172 1430 0.108138 ACATGTACCAAGCCTCGCTC 60.108 55.000 0.00 0.00 38.25 5.03
1176 1434 2.273179 TACCAAGCCTCGCTCGTGT 61.273 57.895 0.00 0.00 38.25 4.49
1248 1509 1.203212 TCTTTACAGAACCGAGGGGGA 60.203 52.381 0.00 0.00 39.97 4.81
1372 1635 6.148315 TGAGAACTGCATATTCTTGTTCACAG 59.852 38.462 13.10 0.00 39.33 3.66
1443 1744 6.385649 AATTAACAATAAATCCGCGATGGT 57.614 33.333 8.23 0.00 39.52 3.55
1472 1773 7.209471 TGTCCACTTTAAATATTTTCTGCGT 57.791 32.000 5.91 0.00 0.00 5.24
1510 1811 1.406887 GCGCAGGAGAATAGGGACAAA 60.407 52.381 0.30 0.00 0.00 2.83
1524 1825 4.781934 AGGGACAAACTGCTGGAATATAC 58.218 43.478 0.00 0.00 0.00 1.47
1525 1826 4.475016 AGGGACAAACTGCTGGAATATACT 59.525 41.667 0.00 0.00 0.00 2.12
1526 1827 4.816925 GGGACAAACTGCTGGAATATACTC 59.183 45.833 0.00 0.00 0.00 2.59
1529 1830 4.475016 ACAAACTGCTGGAATATACTCCCT 59.525 41.667 0.00 0.00 34.22 4.20
1534 1835 5.540719 ACTGCTGGAATATACTCCCTTAGAC 59.459 44.000 0.00 0.00 34.22 2.59
1538 1839 6.645790 TGGAATATACTCCCTTAGACGTTC 57.354 41.667 0.00 0.00 34.22 3.95
1544 1845 3.083293 ACTCCCTTAGACGTTCAGAGAC 58.917 50.000 0.00 0.00 0.00 3.36
1547 1848 2.820787 CCCTTAGACGTTCAGAGACAGT 59.179 50.000 0.00 0.00 0.00 3.55
1552 1853 3.215151 AGACGTTCAGAGACAGTGAGAA 58.785 45.455 0.00 0.00 0.00 2.87
1555 1856 3.381908 ACGTTCAGAGACAGTGAGAAAGT 59.618 43.478 0.00 0.00 0.00 2.66
1557 1858 4.054671 GTTCAGAGACAGTGAGAAAGTGG 58.945 47.826 0.00 0.00 33.04 4.00
1614 1921 2.239150 GGAAGGAGGGAGGGTAAAGAAC 59.761 54.545 0.00 0.00 0.00 3.01
1615 1922 3.182976 GAAGGAGGGAGGGTAAAGAACT 58.817 50.000 0.00 0.00 0.00 3.01
1616 1923 4.359996 GAAGGAGGGAGGGTAAAGAACTA 58.640 47.826 0.00 0.00 0.00 2.24
1623 1930 6.030082 AGGGAGGGTAAAGAACTAAAGATGA 58.970 40.000 0.00 0.00 0.00 2.92
1706 2013 2.700897 ACGGAGATACCCAAGATGGAAG 59.299 50.000 0.00 0.00 40.96 3.46
1724 2031 6.254281 TGGAAGTGCATCTTTAGCTTTTAC 57.746 37.500 0.00 0.00 36.40 2.01
1780 2087 6.439375 TGTGTCTAGTTACATCCATGTACCTT 59.561 38.462 2.48 0.00 42.48 3.50
1813 2121 0.737219 GGCCGCGTCTCTTAGAGTAA 59.263 55.000 9.25 0.00 0.00 2.24
1814 2122 1.533547 GGCCGCGTCTCTTAGAGTAAC 60.534 57.143 9.25 0.18 0.00 2.50
1815 2123 1.401199 GCCGCGTCTCTTAGAGTAACT 59.599 52.381 9.25 0.00 0.00 2.24
1816 2124 2.539344 GCCGCGTCTCTTAGAGTAACTC 60.539 54.545 9.25 0.00 0.00 3.01
1817 2125 2.937799 CCGCGTCTCTTAGAGTAACTCT 59.062 50.000 9.25 0.00 43.83 3.24
1818 2126 3.374678 CCGCGTCTCTTAGAGTAACTCTT 59.625 47.826 9.25 0.00 41.50 2.85
1819 2127 4.142643 CCGCGTCTCTTAGAGTAACTCTTT 60.143 45.833 9.25 0.00 41.50 2.52
1820 2128 5.392286 CGCGTCTCTTAGAGTAACTCTTTT 58.608 41.667 9.25 0.00 41.50 2.27
1821 2129 5.857517 CGCGTCTCTTAGAGTAACTCTTTTT 59.142 40.000 9.25 0.00 41.50 1.94
1858 2168 2.680577 GAACCACGTAACACCCTGTAG 58.319 52.381 0.00 0.00 0.00 2.74
2007 2346 9.791820 TTAATTAGTGCATGATGATTGTTTGAG 57.208 29.630 0.00 0.00 0.00 3.02
2013 2352 5.106038 TGCATGATGATTGTTTGAGAAGTCC 60.106 40.000 0.00 0.00 0.00 3.85
2052 2392 5.116882 ACTAGGAATTTTGTGAGCGGATAC 58.883 41.667 0.00 0.00 0.00 2.24
4180 4611 6.428159 GTCTAGTGGTTTGATCTGTCAATTGT 59.572 38.462 5.13 0.00 43.49 2.71
4193 4624 1.144708 TCAATTGTGAGGACAAGCCCA 59.855 47.619 5.13 0.00 45.29 5.36
4241 4672 0.953727 TGGCTAAAACTGCTGTGCTG 59.046 50.000 0.00 0.00 0.00 4.41
4341 4791 4.042809 TCTGCTCAATTTGGGAAGGAAGTA 59.957 41.667 4.36 0.00 0.00 2.24
4449 4902 1.202758 TGATCGGCTTCTGGTGTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
4457 4910 2.772568 TCTGGTGTTGTTTGATTGCG 57.227 45.000 0.00 0.00 0.00 4.85
4458 4911 1.130955 CTGGTGTTGTTTGATTGCGC 58.869 50.000 0.00 0.00 0.00 6.09
5071 5530 2.098117 GCTCTTTGTGTGCTGTTCTTGT 59.902 45.455 0.00 0.00 32.89 3.16
5091 5550 2.231964 GTGCCTTGCATGATTTCTTCCA 59.768 45.455 0.00 0.00 41.91 3.53
5122 5581 2.107378 TCACATGGGGTTGAAAGCTACA 59.893 45.455 0.00 0.00 0.00 2.74
5132 5591 7.234577 TGGGGTTGAAAGCTACAGATTTTTATT 59.765 33.333 0.00 0.00 33.35 1.40
5133 5592 8.094548 GGGGTTGAAAGCTACAGATTTTTATTT 58.905 33.333 0.00 0.00 33.35 1.40
5134 5593 9.489084 GGGTTGAAAGCTACAGATTTTTATTTT 57.511 29.630 0.00 0.00 33.35 1.82
5227 5688 7.043961 TGGAACTGTGTTAATATTTGTTGCA 57.956 32.000 0.00 0.00 33.34 4.08
5228 5689 6.920758 TGGAACTGTGTTAATATTTGTTGCAC 59.079 34.615 0.00 0.00 31.46 4.57
5238 5699 9.341899 GTTAATATTTGTTGCACTTCCTGTTAG 57.658 33.333 0.00 0.00 0.00 2.34
5348 5809 5.317733 ACATACTGTGTTCAGCTCTACTC 57.682 43.478 0.00 0.00 44.77 2.59
5349 5810 4.158764 ACATACTGTGTTCAGCTCTACTCC 59.841 45.833 0.00 0.00 44.77 3.85
5350 5811 1.896465 ACTGTGTTCAGCTCTACTCCC 59.104 52.381 0.00 0.00 44.77 4.30
5351 5812 2.175202 CTGTGTTCAGCTCTACTCCCT 58.825 52.381 0.00 0.00 34.79 4.20
5352 5813 2.165437 CTGTGTTCAGCTCTACTCCCTC 59.835 54.545 0.00 0.00 34.79 4.30
5353 5814 1.478916 GTGTTCAGCTCTACTCCCTCC 59.521 57.143 0.00 0.00 0.00 4.30
5354 5815 0.741915 GTTCAGCTCTACTCCCTCCG 59.258 60.000 0.00 0.00 0.00 4.63
5355 5816 0.331954 TTCAGCTCTACTCCCTCCGT 59.668 55.000 0.00 0.00 0.00 4.69
5356 5817 0.331954 TCAGCTCTACTCCCTCCGTT 59.668 55.000 0.00 0.00 0.00 4.44
5357 5818 1.187087 CAGCTCTACTCCCTCCGTTT 58.813 55.000 0.00 0.00 0.00 3.60
5358 5819 1.550976 CAGCTCTACTCCCTCCGTTTT 59.449 52.381 0.00 0.00 0.00 2.43
5359 5820 2.758979 CAGCTCTACTCCCTCCGTTTTA 59.241 50.000 0.00 0.00 0.00 1.52
5360 5821 3.194968 CAGCTCTACTCCCTCCGTTTTAA 59.805 47.826 0.00 0.00 0.00 1.52
5361 5822 3.836562 AGCTCTACTCCCTCCGTTTTAAA 59.163 43.478 0.00 0.00 0.00 1.52
5362 5823 4.470304 AGCTCTACTCCCTCCGTTTTAAAT 59.530 41.667 0.00 0.00 0.00 1.40
5363 5824 5.045797 AGCTCTACTCCCTCCGTTTTAAATT 60.046 40.000 0.00 0.00 0.00 1.82
5364 5825 6.155737 AGCTCTACTCCCTCCGTTTTAAATTA 59.844 38.462 0.00 0.00 0.00 1.40
5365 5826 6.479331 GCTCTACTCCCTCCGTTTTAAATTAG 59.521 42.308 0.00 0.00 0.00 1.73
5366 5827 7.632245 GCTCTACTCCCTCCGTTTTAAATTAGA 60.632 40.741 0.00 0.00 0.00 2.10
5367 5828 8.315220 TCTACTCCCTCCGTTTTAAATTAGAT 57.685 34.615 0.00 0.00 0.00 1.98
5368 5829 8.202137 TCTACTCCCTCCGTTTTAAATTAGATG 58.798 37.037 0.00 0.00 0.00 2.90
5369 5830 6.954232 ACTCCCTCCGTTTTAAATTAGATGA 58.046 36.000 0.00 0.00 0.00 2.92
5370 5831 7.574607 ACTCCCTCCGTTTTAAATTAGATGAT 58.425 34.615 0.00 0.00 0.00 2.45
5371 5832 7.715686 ACTCCCTCCGTTTTAAATTAGATGATC 59.284 37.037 0.00 0.00 0.00 2.92
5372 5833 6.996282 TCCCTCCGTTTTAAATTAGATGATCC 59.004 38.462 0.00 0.00 0.00 3.36
5373 5834 6.770785 CCCTCCGTTTTAAATTAGATGATCCA 59.229 38.462 0.00 0.00 0.00 3.41
5374 5835 7.284489 CCCTCCGTTTTAAATTAGATGATCCAA 59.716 37.037 0.00 0.00 0.00 3.53
5375 5836 8.129211 CCTCCGTTTTAAATTAGATGATCCAAC 58.871 37.037 0.00 0.00 0.00 3.77
5376 5837 8.801882 TCCGTTTTAAATTAGATGATCCAACT 57.198 30.769 0.00 0.00 0.00 3.16
5377 5838 9.238368 TCCGTTTTAAATTAGATGATCCAACTT 57.762 29.630 0.00 0.00 0.00 2.66
5378 5839 9.855021 CCGTTTTAAATTAGATGATCCAACTTT 57.145 29.630 0.00 0.00 0.00 2.66
5418 5879 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
5419 5880 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5420 5881 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5421 5882 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5422 5883 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5423 5884 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5424 5885 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5425 5886 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5426 5887 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5427 5888 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5428 5889 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5429 5890 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5430 5891 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
5431 5892 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
5437 5898 4.166725 TGGAACGGAGGGAGTACTATTCTA 59.833 45.833 0.00 0.00 0.00 2.10
5450 5911 8.905850 GGAGTACTATTCTAGTTACTGAAAGCT 58.094 37.037 0.00 0.00 40.14 3.74
5460 5921 2.191128 ACTGAAAGCTAGTTGGCCTG 57.809 50.000 3.32 0.00 37.60 4.85
5463 5924 1.699634 TGAAAGCTAGTTGGCCTGACT 59.300 47.619 15.21 15.21 0.00 3.41
5464 5925 2.106511 TGAAAGCTAGTTGGCCTGACTT 59.893 45.455 15.92 3.45 0.00 3.01
5465 5926 2.959465 AAGCTAGTTGGCCTGACTTT 57.041 45.000 15.92 4.12 0.00 2.66
5476 5938 4.282496 TGGCCTGACTTTTAAAAGGTTGA 58.718 39.130 27.23 10.41 40.31 3.18
5488 5950 3.810310 AAAGGTTGAAAATTGACGGCA 57.190 38.095 0.00 0.00 0.00 5.69
5489 5951 4.335400 AAAGGTTGAAAATTGACGGCAT 57.665 36.364 0.00 0.00 0.00 4.40
5490 5952 5.461032 AAAGGTTGAAAATTGACGGCATA 57.539 34.783 0.00 0.00 0.00 3.14
5491 5953 4.434713 AGGTTGAAAATTGACGGCATAC 57.565 40.909 0.00 0.00 0.00 2.39
5492 5954 3.823873 AGGTTGAAAATTGACGGCATACA 59.176 39.130 0.00 0.00 0.00 2.29
5493 5955 3.917985 GGTTGAAAATTGACGGCATACAC 59.082 43.478 0.00 0.00 0.00 2.90
5494 5956 3.840890 TGAAAATTGACGGCATACACC 57.159 42.857 0.00 0.00 0.00 4.16
5495 5957 3.149981 TGAAAATTGACGGCATACACCA 58.850 40.909 0.00 0.00 0.00 4.17
5497 5959 3.781079 AAATTGACGGCATACACCATG 57.219 42.857 0.00 0.00 37.73 3.66
5498 5960 2.418368 ATTGACGGCATACACCATGT 57.582 45.000 0.00 0.00 36.95 3.21
5499 5961 3.552132 ATTGACGGCATACACCATGTA 57.448 42.857 0.00 0.00 37.24 2.29
5500 5962 3.552132 TTGACGGCATACACCATGTAT 57.448 42.857 0.00 0.00 43.81 2.29
5549 6011 1.671379 GACTGCGTTCAAGGGGGTC 60.671 63.158 0.00 0.00 0.00 4.46
5574 6036 4.444022 CCTGCTAGTCTGGCATCTATGTTT 60.444 45.833 11.71 0.00 39.07 2.83
5575 6037 4.445453 TGCTAGTCTGGCATCTATGTTTG 58.555 43.478 6.82 0.00 34.56 2.93
5576 6038 4.162131 TGCTAGTCTGGCATCTATGTTTGA 59.838 41.667 6.82 0.00 34.56 2.69
5577 6039 4.509600 GCTAGTCTGGCATCTATGTTTGAC 59.490 45.833 2.85 0.00 0.00 3.18
5580 6042 5.316167 AGTCTGGCATCTATGTTTGACAAA 58.684 37.500 0.00 0.00 28.49 2.83
5582 6044 6.435277 AGTCTGGCATCTATGTTTGACAAATT 59.565 34.615 3.49 0.00 28.49 1.82
5583 6045 6.529125 GTCTGGCATCTATGTTTGACAAATTG 59.471 38.462 3.49 0.00 28.49 2.32
5584 6046 6.433716 TCTGGCATCTATGTTTGACAAATTGA 59.566 34.615 3.49 1.47 28.49 2.57
5585 6047 6.623486 TGGCATCTATGTTTGACAAATTGAG 58.377 36.000 3.49 2.26 0.00 3.02
5617 6081 2.159627 CGGCTATTTCAGTGTGACCAAC 59.840 50.000 0.00 0.00 0.00 3.77
5622 6086 5.701290 GCTATTTCAGTGTGACCAACTAGTT 59.299 40.000 1.12 1.12 0.00 2.24
5625 6089 6.827586 TTTCAGTGTGACCAACTAGTTTTT 57.172 33.333 5.07 0.00 0.00 1.94
5658 6122 7.454225 TGATAGTCTAGAGCAGCTACTAATCA 58.546 38.462 6.83 8.23 0.00 2.57
5659 6123 7.939588 TGATAGTCTAGAGCAGCTACTAATCAA 59.060 37.037 6.83 0.00 0.00 2.57
5763 6232 4.613437 AGCCCTACAATTGATCCATGTTT 58.387 39.130 13.59 0.00 0.00 2.83
5986 6465 4.566488 GGCTTGCCAATATATCCTGCTAGT 60.566 45.833 6.79 0.00 0.00 2.57
5995 6474 7.772292 CCAATATATCCTGCTAGTGTATGCAAT 59.228 37.037 0.00 0.00 38.81 3.56
6085 6567 9.618890 CTTCTGAATGGAAATGGTCTTTATCTA 57.381 33.333 0.00 0.00 0.00 1.98
6252 6734 3.559171 GGGATGCTAAAACAGTCTGACCA 60.559 47.826 6.91 0.00 0.00 4.02
6271 6753 3.852578 ACCATTTACTCCCTGGATTGAGT 59.147 43.478 8.76 8.76 43.85 3.41
6311 6793 0.382515 CTCCTCGGTCGATCAGTTCC 59.617 60.000 0.00 0.00 0.00 3.62
6384 6866 1.082690 GCCAACTCTAGCAGCAAGAC 58.917 55.000 0.00 0.00 0.00 3.01
6598 7080 2.029844 GCAGTCTCCGACAGCAACC 61.030 63.158 6.52 0.00 43.05 3.77
6621 7103 1.461127 GTCAGTGAAATCGGAGTGTGC 59.539 52.381 0.00 0.00 0.00 4.57
6687 7175 3.230134 CTCAGGGACTAAGATCTGGGAG 58.770 54.545 0.00 0.00 36.02 4.30
6730 7218 3.063485 GAGTTCAAGTTCCTCTGTCAGC 58.937 50.000 0.00 0.00 0.00 4.26
6795 7283 4.513442 TGTCAGGAATATTGGGAAGAACG 58.487 43.478 0.00 0.00 0.00 3.95
6805 7293 3.319137 TGGGAAGAACGTCTGAATGAG 57.681 47.619 0.00 0.00 0.00 2.90
6808 7296 4.466370 TGGGAAGAACGTCTGAATGAGTAT 59.534 41.667 0.00 0.00 0.00 2.12
6809 7297 4.806247 GGGAAGAACGTCTGAATGAGTATG 59.194 45.833 0.00 0.00 0.00 2.39
6810 7298 4.268884 GGAAGAACGTCTGAATGAGTATGC 59.731 45.833 0.00 0.00 0.00 3.14
6817 7305 2.103771 TCTGAATGAGTATGCTGCTCCC 59.896 50.000 0.00 0.00 32.31 4.30
6826 7314 1.495579 ATGCTGCTCCCTTCAGTGGT 61.496 55.000 0.00 0.00 34.21 4.16
6847 7335 4.080863 GGTAATTCACTCACTGGATCCACT 60.081 45.833 11.44 0.00 0.00 4.00
6856 7344 0.107800 CTGGATCCACTGCTCCTGTG 60.108 60.000 11.44 0.00 33.98 3.66
6893 7381 5.186996 TGATGTTTTTCAGCTCTCCAAAC 57.813 39.130 0.00 0.00 33.14 2.93
6905 7393 3.008049 GCTCTCCAAACTTTCTCCTGGTA 59.992 47.826 0.00 0.00 0.00 3.25
6928 7418 9.515226 GGTAGGTATATTTAAATTGCTCATCCA 57.485 33.333 5.91 0.00 0.00 3.41
6938 7428 6.845758 AAATTGCTCATCCATTCTTGAGAA 57.154 33.333 4.21 0.00 41.53 2.87
7087 7582 0.250901 AAACTTCAGGCCAGACGCAT 60.251 50.000 5.01 0.00 40.31 4.73
7137 7632 1.804151 GTCTTCAACAACGCCATAGCA 59.196 47.619 0.00 0.00 39.83 3.49
7365 7862 3.569548 CTCATCGATTGTATACGCTGCT 58.430 45.455 0.00 0.00 0.00 4.24
7366 7863 4.379499 CCTCATCGATTGTATACGCTGCTA 60.379 45.833 0.00 0.00 0.00 3.49
7439 7937 1.000233 CCATGCAACTAAGCCCCCA 60.000 57.895 0.00 0.00 0.00 4.96
7468 7966 6.187682 CCCAATAAAGTTGGTGGAGATAAGT 58.812 40.000 6.12 0.00 37.88 2.24
7508 8007 6.848451 TGTTTGTTTGTTTGGAACTAGAGAC 58.152 36.000 0.00 0.00 0.00 3.36
7511 8010 4.165372 TGTTTGTTTGGAACTAGAGACCCT 59.835 41.667 0.00 0.00 0.00 4.34
7516 8015 5.592688 TGTTTGGAACTAGAGACCCTTTTTG 59.407 40.000 0.00 0.00 0.00 2.44
7518 8017 4.969484 TGGAACTAGAGACCCTTTTTGTC 58.031 43.478 0.00 0.00 0.00 3.18
7519 8018 4.410883 TGGAACTAGAGACCCTTTTTGTCA 59.589 41.667 0.00 0.00 35.15 3.58
7520 8019 5.073144 TGGAACTAGAGACCCTTTTTGTCAT 59.927 40.000 0.00 0.00 35.15 3.06
7521 8020 5.644206 GGAACTAGAGACCCTTTTTGTCATC 59.356 44.000 0.00 0.00 35.15 2.92
7522 8021 6.441088 AACTAGAGACCCTTTTTGTCATCT 57.559 37.500 0.00 0.00 35.15 2.90
7523 8022 6.043854 ACTAGAGACCCTTTTTGTCATCTC 57.956 41.667 0.00 0.00 35.15 2.75
7525 8024 5.574970 AGAGACCCTTTTTGTCATCTCTT 57.425 39.130 0.00 0.00 39.89 2.85
7566 8072 8.850156 ACAATGTAAGATCAGTTACTGCTTTTT 58.150 29.630 7.61 2.39 34.51 1.94
7586 8092 5.871396 TTTTCTGGTGTACTCTCTCTTGT 57.129 39.130 0.00 0.00 0.00 3.16
7652 8158 2.048222 GCGCACAGCAGTGGAGTA 60.048 61.111 11.54 0.00 45.98 2.59
7654 8160 1.021390 GCGCACAGCAGTGGAGTATT 61.021 55.000 11.54 0.00 45.98 1.89
7657 8188 2.226437 CGCACAGCAGTGGAGTATTTTT 59.774 45.455 11.54 0.00 45.98 1.94
7704 8273 1.475280 TCCATCAAGCATTCAAGCTGC 59.525 47.619 0.00 0.00 45.89 5.25
7739 8476 7.815068 ACTATTATTATTCAGTAGCTTGCTCCG 59.185 37.037 0.00 0.00 0.00 4.63
7744 8481 1.067565 TCAGTAGCTTGCTCCGTGAAG 60.068 52.381 0.00 0.00 0.00 3.02
7747 8484 2.143925 GTAGCTTGCTCCGTGAAGTTT 58.856 47.619 0.00 0.00 0.00 2.66
7748 8485 0.947244 AGCTTGCTCCGTGAAGTTTG 59.053 50.000 0.00 0.00 0.00 2.93
7752 8490 3.682858 GCTTGCTCCGTGAAGTTTGTATA 59.317 43.478 0.00 0.00 0.00 1.47
7829 8568 1.207593 CGTGTTTGCCAGCTGCTAC 59.792 57.895 8.66 3.58 42.00 3.58
7830 8569 1.506309 CGTGTTTGCCAGCTGCTACA 61.506 55.000 8.66 6.28 42.00 2.74
7855 8594 2.738587 TGGTGGCTAAAACTTGGTGA 57.261 45.000 0.00 0.00 0.00 4.02
7861 8600 3.572255 TGGCTAAAACTTGGTGATGTTCC 59.428 43.478 0.00 0.00 0.00 3.62
7862 8601 3.056821 GGCTAAAACTTGGTGATGTTCCC 60.057 47.826 0.00 0.00 0.00 3.97
7900 8640 1.377856 GAAACAGAGGGAGCAGGGC 60.378 63.158 0.00 0.00 0.00 5.19
7901 8641 2.129555 GAAACAGAGGGAGCAGGGCA 62.130 60.000 0.00 0.00 0.00 5.36
7902 8642 1.719063 AAACAGAGGGAGCAGGGCAA 61.719 55.000 0.00 0.00 0.00 4.52
7903 8643 2.134630 AACAGAGGGAGCAGGGCAAG 62.135 60.000 0.00 0.00 0.00 4.01
7904 8644 3.013932 AGAGGGAGCAGGGCAAGG 61.014 66.667 0.00 0.00 0.00 3.61
7905 8645 4.811364 GAGGGAGCAGGGCAAGGC 62.811 72.222 0.00 0.00 0.00 4.35
7912 8652 3.333219 CAGGGCAAGGCAGGGAGA 61.333 66.667 0.00 0.00 0.00 3.71
7913 8653 3.013932 AGGGCAAGGCAGGGAGAG 61.014 66.667 0.00 0.00 0.00 3.20
7914 8654 4.120755 GGGCAAGGCAGGGAGAGG 62.121 72.222 0.00 0.00 0.00 3.69
7915 8655 4.120755 GGCAAGGCAGGGAGAGGG 62.121 72.222 0.00 0.00 0.00 4.30
7916 8656 4.120755 GCAAGGCAGGGAGAGGGG 62.121 72.222 0.00 0.00 0.00 4.79
7971 8711 3.161450 GATGCTCCGGCCCTGGTA 61.161 66.667 0.00 0.00 37.74 3.25
8027 8767 3.490759 GCATGACTCGCGTGTGGG 61.491 66.667 19.71 8.63 35.87 4.61
8029 8769 1.667830 CATGACTCGCGTGTGGGTT 60.668 57.895 19.71 0.00 0.00 4.11
8030 8770 1.374252 ATGACTCGCGTGTGGGTTC 60.374 57.895 19.71 4.26 0.00 3.62
8031 8771 1.816863 ATGACTCGCGTGTGGGTTCT 61.817 55.000 19.71 0.00 0.00 3.01
8032 8772 1.733399 GACTCGCGTGTGGGTTCTC 60.733 63.158 19.71 0.00 0.00 2.87
8033 8773 2.143594 GACTCGCGTGTGGGTTCTCT 62.144 60.000 19.71 0.00 0.00 3.10
8034 8774 1.444553 CTCGCGTGTGGGTTCTCTC 60.445 63.158 5.77 0.00 0.00 3.20
8035 8775 1.867919 CTCGCGTGTGGGTTCTCTCT 61.868 60.000 5.77 0.00 0.00 3.10
8036 8776 1.734477 CGCGTGTGGGTTCTCTCTG 60.734 63.158 0.00 0.00 0.00 3.35
8037 8777 2.029844 GCGTGTGGGTTCTCTCTGC 61.030 63.158 0.00 0.00 0.00 4.26
8038 8778 1.374758 CGTGTGGGTTCTCTCTGCC 60.375 63.158 0.00 0.00 0.00 4.85
8039 8779 1.003233 GTGTGGGTTCTCTCTGCCC 60.003 63.158 0.00 0.00 42.64 5.36
8040 8780 2.224159 TGTGGGTTCTCTCTGCCCC 61.224 63.158 0.00 0.00 41.66 5.80
8119 8859 3.152983 CACGATTAATCAACACACGCAC 58.847 45.455 15.57 0.00 0.00 5.34
8134 8874 2.125713 CACGTGCGGATGTGCCTA 60.126 61.111 16.60 0.00 32.36 3.93
8139 8879 1.668419 GTGCGGATGTGCCTAGATTT 58.332 50.000 0.00 0.00 0.00 2.17
8141 8881 2.016318 TGCGGATGTGCCTAGATTTTG 58.984 47.619 0.00 0.00 0.00 2.44
8142 8882 2.017049 GCGGATGTGCCTAGATTTTGT 58.983 47.619 0.00 0.00 0.00 2.83
8143 8883 2.032178 GCGGATGTGCCTAGATTTTGTC 59.968 50.000 0.00 0.00 0.00 3.18
8144 8884 2.614057 CGGATGTGCCTAGATTTTGTCC 59.386 50.000 0.00 0.00 0.00 4.02
8145 8885 2.952310 GGATGTGCCTAGATTTTGTCCC 59.048 50.000 0.00 0.00 0.00 4.46
8249 8993 2.315925 TTCTTCAAGGCCGATGCTAG 57.684 50.000 0.00 2.47 37.74 3.42
8259 9003 2.353607 GATGCTAGGCGTCGGACG 60.354 66.667 25.18 25.18 45.88 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.100682 CGCACGTATAGCTGACTGGT 59.899 55.000 0.00 0.00 0.00 4.00
8 9 3.135994 TGTCTATCGCACGTATAGCTGA 58.864 45.455 0.00 0.00 0.00 4.26
29 30 1.604693 CCGTCTAAGCAAACCGTCACT 60.605 52.381 0.00 0.00 0.00 3.41
38 39 2.416836 CGAACTGGATCCGTCTAAGCAA 60.417 50.000 7.39 0.00 0.00 3.91
48 49 1.227002 GCGAGGACGAACTGGATCC 60.227 63.158 4.20 4.20 42.66 3.36
55 56 0.446616 GGAAAATGGCGAGGACGAAC 59.553 55.000 0.00 0.00 42.66 3.95
109 111 6.035843 ACGTATATACATTTGGACGAACGTT 58.964 36.000 13.22 0.00 36.55 3.99
118 120 6.994221 AGGAGAAGGACGTATATACATTTGG 58.006 40.000 13.22 0.00 0.00 3.28
125 127 5.183969 CCGATGAGGAGAAGGACGTATATA 58.816 45.833 0.00 0.00 45.00 0.86
138 140 1.860950 CAAATACGCACCGATGAGGAG 59.139 52.381 0.00 0.00 45.00 3.69
139 141 1.478916 TCAAATACGCACCGATGAGGA 59.521 47.619 0.00 0.00 45.00 3.71
157 159 1.278127 GATGTTTCCTCGACCCCTTCA 59.722 52.381 0.00 0.00 0.00 3.02
269 291 3.379240 TGAAATGGAAATTGTGTGCGTG 58.621 40.909 0.00 0.00 0.00 5.34
279 301 9.525826 GGATGAGGTATATCTTGAAATGGAAAT 57.474 33.333 0.00 0.00 0.00 2.17
283 305 6.467677 ACGGATGAGGTATATCTTGAAATGG 58.532 40.000 0.00 0.00 0.00 3.16
285 307 9.035890 TGATACGGATGAGGTATATCTTGAAAT 57.964 33.333 0.00 0.00 31.01 2.17
329 353 0.671796 CATCCGGCGGTGTAGTATCA 59.328 55.000 27.32 2.67 0.00 2.15
332 356 0.896923 AAACATCCGGCGGTGTAGTA 59.103 50.000 27.32 5.33 0.00 1.82
344 368 0.109597 CTGCAGGCACGAAAACATCC 60.110 55.000 5.57 0.00 0.00 3.51
358 382 0.110509 GTTCATGCGTGTCACTGCAG 60.111 55.000 21.13 13.48 45.52 4.41
359 383 0.532640 AGTTCATGCGTGTCACTGCA 60.533 50.000 19.65 19.65 46.51 4.41
360 384 0.588252 AAGTTCATGCGTGTCACTGC 59.412 50.000 5.68 11.34 0.00 4.40
361 385 1.661178 GCAAGTTCATGCGTGTCACTG 60.661 52.381 5.68 6.11 36.45 3.66
362 386 0.588252 GCAAGTTCATGCGTGTCACT 59.412 50.000 5.68 6.75 36.45 3.41
363 387 3.077339 GCAAGTTCATGCGTGTCAC 57.923 52.632 5.68 4.45 36.45 3.67
476 507 5.107837 GCCGTATAGATCGTGAAAGTTCATG 60.108 44.000 6.88 6.88 43.79 3.07
477 508 4.982916 GCCGTATAGATCGTGAAAGTTCAT 59.017 41.667 0.00 0.00 39.73 2.57
478 509 4.097437 AGCCGTATAGATCGTGAAAGTTCA 59.903 41.667 0.00 0.00 34.20 3.18
479 510 4.608951 AGCCGTATAGATCGTGAAAGTTC 58.391 43.478 0.00 0.00 0.00 3.01
514 545 5.390613 GTGTGACAAATTACATGTACTGGC 58.609 41.667 4.68 6.39 0.00 4.85
551 582 0.458543 CGGTGGATCGACTTGACCTG 60.459 60.000 7.84 0.00 0.00 4.00
554 585 1.153628 CCCGGTGGATCGACTTGAC 60.154 63.158 7.84 0.00 0.00 3.18
556 587 0.179119 GTACCCGGTGGATCGACTTG 60.179 60.000 7.84 1.24 34.81 3.16
573 604 0.523072 GAAGTACCACACGCGGAGTA 59.477 55.000 12.47 3.20 0.00 2.59
581 612 1.003233 CTTGGAGGGGAAGTACCACAC 59.997 57.143 0.00 0.00 46.31 3.82
697 733 1.819905 CGTTTGGTGGGGTTTGCTT 59.180 52.632 0.00 0.00 0.00 3.91
775 820 6.715280 TCCATCTGCTTTTGAGTTAGATTCT 58.285 36.000 0.00 0.00 0.00 2.40
776 821 6.992063 TCCATCTGCTTTTGAGTTAGATTC 57.008 37.500 0.00 0.00 0.00 2.52
777 822 6.183360 GCATCCATCTGCTTTTGAGTTAGATT 60.183 38.462 0.00 0.00 39.12 2.40
779 824 4.637534 GCATCCATCTGCTTTTGAGTTAGA 59.362 41.667 0.00 0.00 39.12 2.10
780 825 4.397103 TGCATCCATCTGCTTTTGAGTTAG 59.603 41.667 0.00 0.00 42.75 2.34
781 826 4.334552 TGCATCCATCTGCTTTTGAGTTA 58.665 39.130 0.00 0.00 42.75 2.24
843 891 5.907197 ATATATGAGTGCTTGCGTTGTAC 57.093 39.130 0.00 0.00 0.00 2.90
866 915 9.998106 AATTTATAGCGATGAGTGTATACCTTT 57.002 29.630 0.00 0.00 0.00 3.11
867 916 9.640963 GAATTTATAGCGATGAGTGTATACCTT 57.359 33.333 0.00 0.00 0.00 3.50
868 917 8.803235 TGAATTTATAGCGATGAGTGTATACCT 58.197 33.333 0.00 0.00 0.00 3.08
875 924 8.651588 GGTAAGATGAATTTATAGCGATGAGTG 58.348 37.037 0.00 0.00 0.00 3.51
887 936 9.453572 GATGCTCATATGGGTAAGATGAATTTA 57.546 33.333 4.11 0.00 0.00 1.40
891 940 6.296087 GGAGATGCTCATATGGGTAAGATGAA 60.296 42.308 4.11 0.00 31.08 2.57
892 941 5.188555 GGAGATGCTCATATGGGTAAGATGA 59.811 44.000 4.11 0.00 31.08 2.92
893 942 5.046087 TGGAGATGCTCATATGGGTAAGATG 60.046 44.000 4.11 0.00 31.08 2.90
895 944 4.492646 TGGAGATGCTCATATGGGTAAGA 58.507 43.478 4.11 0.00 31.08 2.10
897 946 4.907269 TCTTGGAGATGCTCATATGGGTAA 59.093 41.667 4.11 0.00 31.08 2.85
902 951 5.010820 TCAGTCTCTTGGAGATGCTCATATG 59.989 44.000 0.00 0.00 40.98 1.78
903 952 5.146298 TCAGTCTCTTGGAGATGCTCATAT 58.854 41.667 0.47 0.00 40.98 1.78
905 954 3.372897 TCAGTCTCTTGGAGATGCTCAT 58.627 45.455 0.47 0.00 40.98 2.90
906 955 2.812658 TCAGTCTCTTGGAGATGCTCA 58.187 47.619 0.47 0.00 40.98 4.26
907 956 3.520569 GTTCAGTCTCTTGGAGATGCTC 58.479 50.000 0.47 0.00 40.98 4.26
908 957 2.235898 GGTTCAGTCTCTTGGAGATGCT 59.764 50.000 0.47 0.00 40.98 3.79
909 958 2.027745 TGGTTCAGTCTCTTGGAGATGC 60.028 50.000 0.47 0.00 40.98 3.91
910 959 3.969287 TGGTTCAGTCTCTTGGAGATG 57.031 47.619 0.47 1.86 40.98 2.90
941 1002 6.800408 CGTCTAGTGACTTCGTAAAATCTCAA 59.200 38.462 0.00 0.00 40.86 3.02
957 1018 1.657594 CGACTACGAAGCGTCTAGTGA 59.342 52.381 13.40 0.00 41.54 3.41
981 1044 1.117142 TTCGGTGGGAGGAGACGTTT 61.117 55.000 0.00 0.00 0.00 3.60
997 1061 2.522930 TTTTCGACGACGCGCATTCG 62.523 55.000 22.84 22.84 42.36 3.34
998 1062 0.247145 ATTTTCGACGACGCGCATTC 60.247 50.000 5.73 1.33 39.58 2.67
1001 1065 2.722731 GGATTTTCGACGACGCGCA 61.723 57.895 5.73 0.00 39.58 6.09
1006 1070 4.593597 TTATTGCAGGATTTTCGACGAC 57.406 40.909 0.00 0.00 0.00 4.34
1010 1074 6.135290 CTGGATTTATTGCAGGATTTTCGA 57.865 37.500 0.00 0.00 39.94 3.71
1043 1108 5.965033 AAAGAGAGGAGCAGATGGAATAA 57.035 39.130 0.00 0.00 0.00 1.40
1044 1109 5.965033 AAAAGAGAGGAGCAGATGGAATA 57.035 39.130 0.00 0.00 0.00 1.75
1049 1114 3.688673 GGACAAAAAGAGAGGAGCAGATG 59.311 47.826 0.00 0.00 0.00 2.90
1053 1118 1.270839 CGGGACAAAAAGAGAGGAGCA 60.271 52.381 0.00 0.00 0.00 4.26
1062 1127 5.240844 ACTCTTTTACCATCGGGACAAAAAG 59.759 40.000 0.00 0.00 38.05 2.27
1068 1133 6.997239 ATAAAACTCTTTTACCATCGGGAC 57.003 37.500 0.00 0.00 37.88 4.46
1069 1134 6.600427 GGAATAAAACTCTTTTACCATCGGGA 59.400 38.462 0.00 0.00 37.88 5.14
1070 1135 6.376018 TGGAATAAAACTCTTTTACCATCGGG 59.624 38.462 0.00 0.00 37.88 5.14
1071 1136 7.385778 TGGAATAAAACTCTTTTACCATCGG 57.614 36.000 0.00 0.00 37.88 4.18
1114 1179 3.120792 TCGTGCACAAGTTCACTTACTC 58.879 45.455 18.64 0.00 34.28 2.59
1118 1183 1.299541 CCTCGTGCACAAGTTCACTT 58.700 50.000 18.64 0.00 36.45 3.16
1120 1185 1.014352 AACCTCGTGCACAAGTTCAC 58.986 50.000 18.64 0.00 0.00 3.18
1121 1186 2.605837 TAACCTCGTGCACAAGTTCA 57.394 45.000 18.64 3.80 0.00 3.18
1122 1187 3.250040 ACATTAACCTCGTGCACAAGTTC 59.750 43.478 18.64 0.00 0.00 3.01
1163 1417 3.693128 TATTTGCACACGAGCGAGGCT 62.693 52.381 0.00 0.00 43.88 4.58
1168 1422 1.071502 CCGTATATTTGCACACGAGCG 60.072 52.381 0.00 0.00 36.53 5.03
1172 1430 1.329292 CCCACCGTATATTTGCACACG 59.671 52.381 0.00 0.00 0.00 4.49
1176 1434 1.440938 GCGCCCACCGTATATTTGCA 61.441 55.000 0.00 0.00 39.71 4.08
1248 1509 0.315568 GTCACCACTGCTTCGTCTCT 59.684 55.000 0.00 0.00 0.00 3.10
1372 1635 8.854614 ATCTGAGTATGATTAATAAACTGGCC 57.145 34.615 0.00 0.00 0.00 5.36
1472 1773 2.543031 GCGCGATCATGGTAGTACAGAA 60.543 50.000 12.10 0.00 0.00 3.02
1480 1781 1.106944 TCTCCTGCGCGATCATGGTA 61.107 55.000 12.10 0.00 0.00 3.25
1481 1782 1.960040 TTCTCCTGCGCGATCATGGT 61.960 55.000 12.10 0.00 0.00 3.55
1482 1783 0.602106 ATTCTCCTGCGCGATCATGG 60.602 55.000 12.10 3.38 0.00 3.66
1510 1811 5.540719 GTCTAAGGGAGTATATTCCAGCAGT 59.459 44.000 15.53 0.00 39.09 4.40
1524 1825 3.082548 TGTCTCTGAACGTCTAAGGGAG 58.917 50.000 0.00 0.00 0.00 4.30
1525 1826 3.082548 CTGTCTCTGAACGTCTAAGGGA 58.917 50.000 0.00 0.00 0.00 4.20
1526 1827 2.820787 ACTGTCTCTGAACGTCTAAGGG 59.179 50.000 0.00 0.00 0.00 3.95
1529 1830 4.386711 TCTCACTGTCTCTGAACGTCTAA 58.613 43.478 0.00 0.00 0.00 2.10
1534 1835 3.733224 CACTTTCTCACTGTCTCTGAACG 59.267 47.826 0.00 0.00 0.00 3.95
1538 1839 3.305950 CCTCCACTTTCTCACTGTCTCTG 60.306 52.174 0.00 0.00 0.00 3.35
1544 1845 7.786030 TCTAATAATCCTCCACTTTCTCACTG 58.214 38.462 0.00 0.00 0.00 3.66
1555 1856 9.828691 TCTGATGAGTAATCTAATAATCCTCCA 57.171 33.333 0.00 0.00 36.15 3.86
1578 1882 2.304180 TCCTTCCAGCTCTTTTCCTCTG 59.696 50.000 0.00 0.00 0.00 3.35
1614 1921 7.632515 CGCTTTCGTCTTATTTGTCATCTTTAG 59.367 37.037 0.00 0.00 0.00 1.85
1615 1922 7.412563 CCGCTTTCGTCTTATTTGTCATCTTTA 60.413 37.037 0.00 0.00 0.00 1.85
1616 1923 6.307155 CGCTTTCGTCTTATTTGTCATCTTT 58.693 36.000 0.00 0.00 0.00 2.52
1623 1930 2.482721 CCACCGCTTTCGTCTTATTTGT 59.517 45.455 0.00 0.00 0.00 2.83
1660 1967 4.585955 TCTCTCGCTTACTGTTTCTGTT 57.414 40.909 0.00 0.00 0.00 3.16
1706 2013 9.678941 AAAACTTAGTAAAAGCTAAAGATGCAC 57.321 29.630 0.00 0.00 31.43 4.57
1780 2087 0.390209 GCGGCCGGTGTTAAAGACTA 60.390 55.000 29.38 0.00 0.00 2.59
1821 2129 5.272397 GTGGTTCGTTCGTTTGGATAAAAA 58.728 37.500 0.00 0.00 0.00 1.94
1845 2155 3.418047 ACCATTTGCTACAGGGTGTTAC 58.582 45.455 0.00 0.00 0.00 2.50
1858 2168 6.903883 TTCTACGATAAGAAGACCATTTGC 57.096 37.500 0.00 0.00 31.85 3.68
1984 2323 7.634671 TCTCAAACAATCATCATGCACTAAT 57.365 32.000 0.00 0.00 0.00 1.73
1985 2324 7.175467 ACTTCTCAAACAATCATCATGCACTAA 59.825 33.333 0.00 0.00 0.00 2.24
1986 2325 6.656270 ACTTCTCAAACAATCATCATGCACTA 59.344 34.615 0.00 0.00 0.00 2.74
1987 2326 5.475909 ACTTCTCAAACAATCATCATGCACT 59.524 36.000 0.00 0.00 0.00 4.40
2052 2392 1.151668 CTCCTGGTGAGCGTTTTGAG 58.848 55.000 0.00 0.00 33.47 3.02
3625 4044 2.791256 CAACGCTATTGGGCACGG 59.209 61.111 0.00 0.00 0.00 4.94
3802 4228 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3803 4229 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3804 4230 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3805 4231 5.047377 GGATCTCTCTCTCTCTCTCTCTCTC 60.047 52.000 0.00 0.00 0.00 3.20
3806 4232 4.837860 GGATCTCTCTCTCTCTCTCTCTCT 59.162 50.000 0.00 0.00 0.00 3.10
3903 4333 4.069869 GGAGCTGAGCTGCAACAA 57.930 55.556 21.41 0.00 46.16 2.83
4025 4455 4.101448 AGCGCCCCAGATCACCAC 62.101 66.667 2.29 0.00 0.00 4.16
4180 4611 3.650950 GGGCTGGGCTTGTCCTCA 61.651 66.667 0.00 0.00 34.39 3.86
4193 4624 2.177888 AGGTGAAAAAGAGGAAAGGGCT 59.822 45.455 0.00 0.00 0.00 5.19
4255 4686 3.817647 ACATGTTTGAGCTCAAGAACTCC 59.182 43.478 27.02 13.33 37.15 3.85
4300 4750 2.877168 CAGAGCAGAGGCATTCAATACC 59.123 50.000 0.00 0.00 44.61 2.73
4341 4791 3.562176 GGAGACACCACCAGATTGGAATT 60.562 47.826 1.40 0.00 41.78 2.17
4416 4866 4.228912 AGCCGATCAAGACAAACTTTTG 57.771 40.909 0.00 0.00 43.62 2.44
4449 4902 2.031245 ACTGTTCGAATTGCGCAATCAA 60.031 40.909 33.93 23.08 40.61 2.57
4457 4910 0.165944 CACGGGACTGTTCGAATTGC 59.834 55.000 0.00 0.00 0.00 3.56
4458 4911 1.194547 CACACGGGACTGTTCGAATTG 59.805 52.381 0.00 0.00 0.00 2.32
4556 5012 6.368516 TGCCAAGAACAAACAAAAAGAAAGAG 59.631 34.615 0.00 0.00 0.00 2.85
4840 5296 3.838271 CGGAGGCGGCAGCTCTTA 61.838 66.667 13.08 0.00 44.37 2.10
5071 5530 2.527497 TGGAAGAAATCATGCAAGGCA 58.473 42.857 0.00 0.00 44.86 4.75
5224 5685 4.682778 ACAGTAACTAACAGGAAGTGCA 57.317 40.909 0.00 0.00 0.00 4.57
5227 5688 7.450903 AGCAATAACAGTAACTAACAGGAAGT 58.549 34.615 0.00 0.00 0.00 3.01
5228 5689 7.819900 AGAGCAATAACAGTAACTAACAGGAAG 59.180 37.037 0.00 0.00 0.00 3.46
5238 5699 6.985188 TTCATCCAGAGCAATAACAGTAAC 57.015 37.500 0.00 0.00 0.00 2.50
5290 5751 7.658261 AGCCCAAGTTTGATTAGTTTCTAAAC 58.342 34.615 0.00 0.00 39.17 2.01
5296 5757 8.018537 ACTTAAAGCCCAAGTTTGATTAGTTT 57.981 30.769 0.00 0.00 32.28 2.66
5299 5760 6.868339 CCAACTTAAAGCCCAAGTTTGATTAG 59.132 38.462 5.45 0.00 42.18 1.73
5348 5809 6.770785 TGGATCATCTAATTTAAAACGGAGGG 59.229 38.462 0.00 0.00 0.00 4.30
5349 5810 7.801716 TGGATCATCTAATTTAAAACGGAGG 57.198 36.000 0.00 0.00 0.00 4.30
5350 5811 8.893727 AGTTGGATCATCTAATTTAAAACGGAG 58.106 33.333 0.00 0.00 0.00 4.63
5351 5812 8.801882 AGTTGGATCATCTAATTTAAAACGGA 57.198 30.769 0.00 0.00 0.00 4.69
5352 5813 9.855021 AAAGTTGGATCATCTAATTTAAAACGG 57.145 29.630 0.00 0.00 0.00 4.44
5392 5853 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
5393 5854 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
5394 5855 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
5395 5856 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5396 5857 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5397 5858 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5398 5859 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5399 5860 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5400 5861 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5401 5862 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5402 5863 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5403 5864 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5404 5865 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5405 5866 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5406 5867 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5407 5868 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5408 5869 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5409 5870 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5410 5871 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5411 5872 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5412 5873 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5413 5874 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
5414 5875 3.053095 AGAATAGTACTCCCTCCGTTCCA 60.053 47.826 0.00 0.00 0.00 3.53
5415 5876 3.564264 AGAATAGTACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
5416 5877 5.945466 CTAGAATAGTACTCCCTCCGTTC 57.055 47.826 0.00 0.00 32.85 3.95
5430 5891 9.522804 CCAACTAGCTTTCAGTAACTAGAATAG 57.477 37.037 0.00 0.00 46.50 1.73
5431 5892 7.980099 GCCAACTAGCTTTCAGTAACTAGAATA 59.020 37.037 0.00 0.00 36.45 1.75
5437 5898 3.328050 AGGCCAACTAGCTTTCAGTAACT 59.672 43.478 5.01 0.00 0.00 2.24
5450 5911 5.451354 ACCTTTTAAAAGTCAGGCCAACTA 58.549 37.500 23.04 0.00 34.20 2.24
5452 5913 4.665833 ACCTTTTAAAAGTCAGGCCAAC 57.334 40.909 23.04 2.11 34.20 3.77
5460 5921 8.325282 CCGTCAATTTTCAACCTTTTAAAAGTC 58.675 33.333 23.04 0.00 34.20 3.01
5463 5924 6.594159 TGCCGTCAATTTTCAACCTTTTAAAA 59.406 30.769 0.00 0.00 0.00 1.52
5464 5925 6.106673 TGCCGTCAATTTTCAACCTTTTAAA 58.893 32.000 0.00 0.00 0.00 1.52
5465 5926 5.661458 TGCCGTCAATTTTCAACCTTTTAA 58.339 33.333 0.00 0.00 0.00 1.52
5476 5938 3.509575 ACATGGTGTATGCCGTCAATTTT 59.490 39.130 0.00 0.00 40.59 1.82
5513 5975 4.863491 CAGTCAAGGTCAAAAATGGACTG 58.137 43.478 0.00 0.00 43.01 3.51
5524 5986 1.581934 CTTGAACGCAGTCAAGGTCA 58.418 50.000 15.47 0.00 45.00 4.02
5574 6036 6.036735 GCCGCTAACTAATACTCAATTTGTCA 59.963 38.462 0.00 0.00 33.21 3.58
5575 6037 6.258068 AGCCGCTAACTAATACTCAATTTGTC 59.742 38.462 0.00 0.00 33.21 3.18
5576 6038 6.113411 AGCCGCTAACTAATACTCAATTTGT 58.887 36.000 0.00 0.00 35.42 2.83
5577 6039 6.604735 AGCCGCTAACTAATACTCAATTTG 57.395 37.500 0.00 0.00 0.00 2.32
5580 6042 8.148351 TGAAATAGCCGCTAACTAATACTCAAT 58.852 33.333 3.73 0.00 0.00 2.57
5582 6044 7.046292 TGAAATAGCCGCTAACTAATACTCA 57.954 36.000 3.73 0.00 0.00 3.41
5583 6045 7.115095 CACTGAAATAGCCGCTAACTAATACTC 59.885 40.741 3.73 0.00 0.00 2.59
5584 6046 6.924060 CACTGAAATAGCCGCTAACTAATACT 59.076 38.462 3.73 0.00 0.00 2.12
5585 6047 6.700520 ACACTGAAATAGCCGCTAACTAATAC 59.299 38.462 3.73 0.00 0.00 1.89
5596 6060 2.093306 TGGTCACACTGAAATAGCCG 57.907 50.000 0.00 0.00 0.00 5.52
5636 6100 7.284074 ACTTGATTAGTAGCTGCTCTAGACTA 58.716 38.462 7.91 5.62 34.56 2.59
5638 6102 6.385649 ACTTGATTAGTAGCTGCTCTAGAC 57.614 41.667 7.91 0.00 34.56 2.59
5644 6108 6.485830 TTCCATACTTGATTAGTAGCTGCT 57.514 37.500 9.94 9.94 42.44 4.24
5645 6109 9.442047 AATATTCCATACTTGATTAGTAGCTGC 57.558 33.333 0.00 0.00 42.44 5.25
5685 6150 8.993121 TGCTAAAAGATAGAAAAACTGACTGAG 58.007 33.333 0.00 0.00 0.00 3.35
5716 6183 6.743575 ATGTCCAAATTGTAGCAAGTACTC 57.256 37.500 0.00 0.00 32.19 2.59
5717 6184 7.148239 GCTTATGTCCAAATTGTAGCAAGTACT 60.148 37.037 0.00 0.00 32.19 2.73
5763 6232 5.521906 TTTTCAATGGAATCGGTGTGAAA 57.478 34.783 0.00 0.00 34.20 2.69
5811 6285 9.469807 GAATCATCTACACAGGATAAAGTACTG 57.530 37.037 0.00 0.00 44.97 2.74
5812 6286 9.427821 AGAATCATCTACACAGGATAAAGTACT 57.572 33.333 0.00 0.00 32.88 2.73
5847 6321 9.349713 TCAATAATAACAACAAGAGGTGAACTT 57.650 29.630 0.00 0.00 0.00 2.66
5848 6322 8.784043 GTCAATAATAACAACAAGAGGTGAACT 58.216 33.333 0.00 0.00 0.00 3.01
5849 6323 8.784043 AGTCAATAATAACAACAAGAGGTGAAC 58.216 33.333 0.00 0.00 0.00 3.18
5863 6342 7.617041 AGAGGTGCTCAAAGTCAATAATAAC 57.383 36.000 0.00 0.00 32.06 1.89
5870 6349 3.134623 TGAGAAGAGGTGCTCAAAGTCAA 59.865 43.478 0.00 0.00 38.14 3.18
6013 6492 0.329261 TGAAATCACTGGAGCCCTGG 59.671 55.000 0.00 0.00 0.00 4.45
6085 6567 6.549364 TGAAATTGTCACAGGTAAAATCTGGT 59.451 34.615 0.00 0.00 36.62 4.00
6252 6734 4.536090 TGTCACTCAATCCAGGGAGTAAAT 59.464 41.667 0.00 0.00 42.22 1.40
6311 6793 3.935315 TGAGCTTCTCAGAGTCATTTGG 58.065 45.455 0.00 0.00 35.39 3.28
6384 6866 1.481772 CACCCCCAAATGGTGCAATAG 59.518 52.381 0.00 0.00 46.13 1.73
6598 7080 0.246635 ACTCCGATTTCACTGACGGG 59.753 55.000 0.00 0.00 44.57 5.28
6687 7175 1.600916 ACGGAAAGCTGCTGGTTCC 60.601 57.895 18.87 18.87 32.90 3.62
6745 7233 0.537188 ACTCTGGGCTAATCACCGTG 59.463 55.000 0.00 0.00 0.00 4.94
6781 7269 5.989477 TCATTCAGACGTTCTTCCCAATAT 58.011 37.500 0.00 0.00 0.00 1.28
6795 7283 3.129871 GGAGCAGCATACTCATTCAGAC 58.870 50.000 0.00 0.00 35.79 3.51
6805 7293 1.661341 CACTGAAGGGAGCAGCATAC 58.339 55.000 0.00 0.00 36.86 2.39
6808 7296 0.835971 TACCACTGAAGGGAGCAGCA 60.836 55.000 0.00 0.00 36.86 4.41
6809 7297 0.324943 TTACCACTGAAGGGAGCAGC 59.675 55.000 0.00 0.00 36.86 5.25
6810 7298 3.274288 GAATTACCACTGAAGGGAGCAG 58.726 50.000 0.00 0.00 39.26 4.24
7087 7582 1.766496 AGTTGTGTTCCCGGAGAAGAA 59.234 47.619 0.73 0.00 34.29 2.52
7137 7632 1.675641 GTCGTTGCCCAGGAGCATT 60.676 57.895 3.68 0.00 43.64 3.56
7439 7937 4.757692 TCCACCAACTTTATTGGGGAAAT 58.242 39.130 9.56 0.00 45.73 2.17
7497 7996 4.969484 TGACAAAAAGGGTCTCTAGTTCC 58.031 43.478 0.00 0.00 36.26 3.62
7508 8007 3.321682 TGCCAAAGAGATGACAAAAAGGG 59.678 43.478 0.00 0.00 0.00 3.95
7511 8010 9.558396 AAATAAATGCCAAAGAGATGACAAAAA 57.442 25.926 0.00 0.00 0.00 1.94
7516 8015 7.814107 TGTTCAAATAAATGCCAAAGAGATGAC 59.186 33.333 0.00 0.00 0.00 3.06
7518 8017 8.537049 TTGTTCAAATAAATGCCAAAGAGATG 57.463 30.769 0.00 0.00 0.00 2.90
7519 8018 9.158233 CATTGTTCAAATAAATGCCAAAGAGAT 57.842 29.630 0.00 0.00 0.00 2.75
7520 8019 8.149647 ACATTGTTCAAATAAATGCCAAAGAGA 58.850 29.630 0.00 0.00 35.20 3.10
7521 8020 8.314143 ACATTGTTCAAATAAATGCCAAAGAG 57.686 30.769 0.00 0.00 35.20 2.85
7522 8021 9.770097 TTACATTGTTCAAATAAATGCCAAAGA 57.230 25.926 0.00 0.00 35.20 2.52
7525 8024 9.941325 ATCTTACATTGTTCAAATAAATGCCAA 57.059 25.926 0.00 0.00 35.20 4.52
7566 8072 4.893524 TCAACAAGAGAGAGTACACCAGAA 59.106 41.667 0.00 0.00 0.00 3.02
7567 8073 4.470602 TCAACAAGAGAGAGTACACCAGA 58.529 43.478 0.00 0.00 0.00 3.86
7572 8078 6.706270 GGAAATGTTCAACAAGAGAGAGTACA 59.294 38.462 0.00 0.00 0.00 2.90
7635 8141 1.021390 AATACTCCACTGCTGTGCGC 61.021 55.000 17.57 0.00 42.54 6.09
7677 8208 7.808381 CAGCTTGAATGCTTGATGGATAATAAG 59.192 37.037 0.00 0.00 41.98 1.73
7678 8209 7.654568 CAGCTTGAATGCTTGATGGATAATAA 58.345 34.615 0.00 0.00 41.98 1.40
7685 8254 1.922570 GCAGCTTGAATGCTTGATGG 58.077 50.000 0.00 0.00 41.98 3.51
7716 8285 6.425114 CACGGAGCAAGCTACTGAATAATAAT 59.575 38.462 2.37 0.00 0.00 1.28
7738 8475 4.727734 GCAGCCATGTATACAAACTTCACG 60.728 45.833 10.14 0.00 0.00 4.35
7739 8476 4.438744 GGCAGCCATGTATACAAACTTCAC 60.439 45.833 10.14 0.00 0.00 3.18
7744 8481 2.285083 TCGGCAGCCATGTATACAAAC 58.715 47.619 13.30 2.43 0.00 2.93
7747 8484 2.103941 TGAATCGGCAGCCATGTATACA 59.896 45.455 13.30 8.27 0.00 2.29
7748 8485 2.766313 TGAATCGGCAGCCATGTATAC 58.234 47.619 13.30 0.00 0.00 1.47
7752 8490 0.322816 AGTTGAATCGGCAGCCATGT 60.323 50.000 13.30 0.00 0.00 3.21
7829 8568 2.440409 AGTTTTAGCCACCATGCTCTG 58.560 47.619 0.00 0.00 41.68 3.35
7830 8569 2.821969 CAAGTTTTAGCCACCATGCTCT 59.178 45.455 0.00 0.00 41.68 4.09
7840 8579 3.056821 GGGAACATCACCAAGTTTTAGCC 60.057 47.826 0.00 0.00 0.00 3.93
7855 8594 0.620556 AATGGCTCGACAGGGAACAT 59.379 50.000 0.00 0.00 0.00 2.71
7861 8600 2.753966 CGGCAAATGGCTCGACAGG 61.754 63.158 5.40 0.00 44.01 4.00
7862 8601 2.787249 CGGCAAATGGCTCGACAG 59.213 61.111 5.40 0.00 44.01 3.51
7900 8640 2.285668 TCCCCTCTCCCTGCCTTG 60.286 66.667 0.00 0.00 0.00 3.61
7901 8641 2.041928 CTCCCCTCTCCCTGCCTT 59.958 66.667 0.00 0.00 0.00 4.35
7902 8642 4.101077 CCTCCCCTCTCCCTGCCT 62.101 72.222 0.00 0.00 0.00 4.75
7912 8652 4.715130 TAGTGTGCGCCCTCCCCT 62.715 66.667 4.18 0.00 0.00 4.79
7913 8653 2.552231 AAATAGTGTGCGCCCTCCCC 62.552 60.000 4.18 0.00 0.00 4.81
7914 8654 0.179468 TAAATAGTGTGCGCCCTCCC 59.821 55.000 4.18 0.00 0.00 4.30
7915 8655 1.873591 CATAAATAGTGTGCGCCCTCC 59.126 52.381 4.18 0.00 0.00 4.30
7916 8656 2.287915 CACATAAATAGTGTGCGCCCTC 59.712 50.000 4.18 0.00 40.30 4.30
8027 8767 2.270527 GCAGGGGGCAGAGAGAAC 59.729 66.667 0.00 0.00 43.97 3.01
8087 8827 2.963548 TTAATCGTGGCACCGTATGA 57.036 45.000 12.86 3.12 0.00 2.15
8119 8859 0.530650 AATCTAGGCACATCCGCACG 60.531 55.000 0.00 0.00 40.77 5.34
8221 8965 3.058501 TCGGCCTTGAAGAAATCGTTTTC 60.059 43.478 10.36 10.36 41.34 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.