Multiple sequence alignment - TraesCS3B01G367500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G367500 | chr3B | 100.000 | 8261 | 0 | 0 | 1 | 8261 | 579446183 | 579454443 | 0.000000e+00 | 15256.0 |
1 | TraesCS3B01G367500 | chr3B | 79.720 | 715 | 103 | 28 | 2892 | 3581 | 579448266 | 579448963 | 5.800000e-131 | 479.0 |
2 | TraesCS3B01G367500 | chr3B | 79.720 | 715 | 103 | 28 | 2084 | 2781 | 579449074 | 579449763 | 5.800000e-131 | 479.0 |
3 | TraesCS3B01G367500 | chr3B | 92.553 | 94 | 7 | 0 | 5337 | 5430 | 749683504 | 749683597 | 1.450000e-27 | 135.0 |
4 | TraesCS3B01G367500 | chr3B | 81.373 | 102 | 15 | 3 | 896 | 994 | 62756625 | 62756525 | 6.870000e-11 | 80.5 |
5 | TraesCS3B01G367500 | chr3D | 90.715 | 2617 | 146 | 43 | 2776 | 5348 | 442171403 | 442173966 | 0.000000e+00 | 3397.0 |
6 | TraesCS3B01G367500 | chr3D | 92.012 | 2241 | 122 | 30 | 5429 | 7645 | 442173963 | 442176170 | 0.000000e+00 | 3094.0 |
7 | TraesCS3B01G367500 | chr3D | 89.317 | 1142 | 79 | 22 | 1402 | 2538 | 442170074 | 442171177 | 0.000000e+00 | 1393.0 |
8 | TraesCS3B01G367500 | chr3D | 86.022 | 1159 | 99 | 30 | 1 | 1118 | 442168424 | 442169560 | 0.000000e+00 | 1184.0 |
9 | TraesCS3B01G367500 | chr3D | 87.071 | 495 | 35 | 7 | 7727 | 8220 | 442176369 | 442176835 | 4.390000e-147 | 532.0 |
10 | TraesCS3B01G367500 | chr3D | 94.268 | 314 | 9 | 5 | 1120 | 1424 | 442169750 | 442170063 | 9.710000e-129 | 472.0 |
11 | TraesCS3B01G367500 | chr3D | 76.756 | 783 | 113 | 38 | 2023 | 2781 | 442171444 | 442172181 | 2.820000e-99 | 374.0 |
12 | TraesCS3B01G367500 | chr3D | 78.179 | 582 | 74 | 29 | 2776 | 3336 | 442170620 | 442171169 | 1.030000e-83 | 322.0 |
13 | TraesCS3B01G367500 | chr3D | 89.266 | 177 | 18 | 1 | 2605 | 2781 | 442171184 | 442171359 | 3.880000e-53 | 220.0 |
14 | TraesCS3B01G367500 | chr3D | 84.762 | 105 | 14 | 1 | 899 | 1001 | 597142889 | 597142993 | 4.080000e-18 | 104.0 |
15 | TraesCS3B01G367500 | chr3A | 92.879 | 2247 | 102 | 28 | 5429 | 7645 | 583243755 | 583245973 | 0.000000e+00 | 3210.0 |
16 | TraesCS3B01G367500 | chr3A | 89.080 | 2619 | 152 | 59 | 2783 | 5348 | 583241221 | 583243758 | 0.000000e+00 | 3129.0 |
17 | TraesCS3B01G367500 | chr3A | 83.911 | 1672 | 149 | 57 | 1167 | 2781 | 583240384 | 583241992 | 0.000000e+00 | 1487.0 |
18 | TraesCS3B01G367500 | chr3A | 87.044 | 548 | 33 | 12 | 7719 | 8259 | 583246230 | 583246746 | 1.190000e-162 | 584.0 |
19 | TraesCS3B01G367500 | chr3A | 86.116 | 569 | 46 | 12 | 1 | 542 | 583239150 | 583239712 | 4.300000e-162 | 582.0 |
20 | TraesCS3B01G367500 | chr3A | 80.645 | 527 | 54 | 24 | 620 | 1114 | 583239752 | 583240262 | 1.690000e-96 | 364.0 |
21 | TraesCS3B01G367500 | chr3A | 82.576 | 132 | 20 | 3 | 906 | 1035 | 77470021 | 77469891 | 6.780000e-21 | 113.0 |
22 | TraesCS3B01G367500 | chr1D | 72.822 | 861 | 189 | 33 | 5888 | 6725 | 403729582 | 403728744 | 1.380000e-62 | 252.0 |
23 | TraesCS3B01G367500 | chr1D | 81.061 | 132 | 15 | 6 | 905 | 1034 | 471837585 | 471837462 | 6.820000e-16 | 97.1 |
24 | TraesCS3B01G367500 | chr1B | 72.390 | 862 | 191 | 33 | 5888 | 6725 | 543180298 | 543179460 | 6.450000e-56 | 230.0 |
25 | TraesCS3B01G367500 | chr1B | 84.848 | 66 | 10 | 0 | 4822 | 4887 | 616136525 | 616136460 | 5.350000e-07 | 67.6 |
26 | TraesCS3B01G367500 | chr7B | 82.353 | 204 | 34 | 2 | 4714 | 4916 | 509569111 | 509568909 | 8.520000e-40 | 176.0 |
27 | TraesCS3B01G367500 | chr7D | 81.863 | 204 | 35 | 2 | 4714 | 4916 | 483923939 | 483923737 | 3.960000e-38 | 171.0 |
28 | TraesCS3B01G367500 | chr7A | 80.882 | 204 | 37 | 2 | 4714 | 4916 | 550303419 | 550303217 | 8.580000e-35 | 159.0 |
29 | TraesCS3B01G367500 | chr7A | 91.111 | 45 | 2 | 2 | 296 | 340 | 624625277 | 624625235 | 8.950000e-05 | 60.2 |
30 | TraesCS3B01G367500 | chr1A | 93.939 | 99 | 4 | 2 | 5341 | 5438 | 58166617 | 58166714 | 1.860000e-31 | 148.0 |
31 | TraesCS3B01G367500 | chr1A | 95.455 | 88 | 4 | 0 | 5345 | 5432 | 186714746 | 186714659 | 3.110000e-29 | 141.0 |
32 | TraesCS3B01G367500 | chr1A | 92.157 | 51 | 2 | 1 | 933 | 981 | 3225639 | 3225589 | 4.140000e-08 | 71.3 |
33 | TraesCS3B01G367500 | chr5A | 94.681 | 94 | 3 | 2 | 5338 | 5430 | 595082538 | 595082630 | 2.400000e-30 | 145.0 |
34 | TraesCS3B01G367500 | chr5A | 91.919 | 99 | 8 | 0 | 5344 | 5442 | 126275632 | 126275730 | 1.120000e-28 | 139.0 |
35 | TraesCS3B01G367500 | chr5A | 88.182 | 110 | 10 | 3 | 5337 | 5444 | 394333247 | 394333355 | 2.420000e-25 | 128.0 |
36 | TraesCS3B01G367500 | chr6A | 94.444 | 90 | 4 | 1 | 5345 | 5434 | 74241744 | 74241832 | 4.020000e-28 | 137.0 |
37 | TraesCS3B01G367500 | chr6A | 100.000 | 32 | 0 | 0 | 310 | 341 | 324283161 | 324283130 | 8.950000e-05 | 60.2 |
38 | TraesCS3B01G367500 | chr6B | 91.000 | 100 | 9 | 0 | 5344 | 5443 | 132894266 | 132894365 | 1.450000e-27 | 135.0 |
39 | TraesCS3B01G367500 | chr5D | 89.623 | 106 | 8 | 3 | 5336 | 5440 | 333986365 | 333986468 | 1.870000e-26 | 132.0 |
40 | TraesCS3B01G367500 | chr5D | 89.362 | 47 | 5 | 0 | 293 | 339 | 530608269 | 530608315 | 8.950000e-05 | 60.2 |
41 | TraesCS3B01G367500 | chr4D | 81.343 | 134 | 20 | 3 | 914 | 1043 | 122700880 | 122700748 | 4.080000e-18 | 104.0 |
42 | TraesCS3B01G367500 | chr4D | 91.489 | 47 | 4 | 0 | 2547 | 2593 | 442169878 | 442169832 | 1.920000e-06 | 65.8 |
43 | TraesCS3B01G367500 | chr4D | 94.595 | 37 | 2 | 0 | 304 | 340 | 48712371 | 48712335 | 3.220000e-04 | 58.4 |
44 | TraesCS3B01G367500 | chr2B | 80.556 | 108 | 19 | 2 | 4822 | 4928 | 663898897 | 663899003 | 1.910000e-11 | 82.4 |
45 | TraesCS3B01G367500 | chr2B | 96.774 | 31 | 1 | 0 | 2544 | 2574 | 384396424 | 384396454 | 1.500000e-02 | 52.8 |
46 | TraesCS3B01G367500 | chr5B | 88.525 | 61 | 6 | 1 | 901 | 961 | 604866575 | 604866634 | 1.150000e-08 | 73.1 |
47 | TraesCS3B01G367500 | chr5B | 94.444 | 36 | 2 | 0 | 304 | 339 | 680823709 | 680823674 | 1.000000e-03 | 56.5 |
48 | TraesCS3B01G367500 | chr6D | 91.667 | 48 | 2 | 2 | 294 | 340 | 242634289 | 242634243 | 1.920000e-06 | 65.8 |
49 | TraesCS3B01G367500 | chr6D | 94.595 | 37 | 2 | 0 | 304 | 340 | 21613096 | 21613060 | 3.220000e-04 | 58.4 |
50 | TraesCS3B01G367500 | chr6D | 97.059 | 34 | 1 | 0 | 2549 | 2582 | 363317814 | 363317847 | 3.220000e-04 | 58.4 |
51 | TraesCS3B01G367500 | chr2D | 89.796 | 49 | 5 | 0 | 2547 | 2595 | 606702572 | 606702524 | 6.920000e-06 | 63.9 |
52 | TraesCS3B01G367500 | chr2D | 85.484 | 62 | 6 | 1 | 2549 | 2610 | 574602475 | 574602533 | 2.490000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G367500 | chr3B | 579446183 | 579454443 | 8260 | False | 15256.000000 | 15256 | 100.000000 | 1 | 8261 | 1 | chr3B.!!$F1 | 8260 |
1 | TraesCS3B01G367500 | chr3B | 579448266 | 579449763 | 1497 | False | 479.000000 | 479 | 79.720000 | 2084 | 3581 | 2 | chr3B.!!$F3 | 1497 |
2 | TraesCS3B01G367500 | chr3D | 442168424 | 442176835 | 8411 | False | 1220.888889 | 3397 | 87.067333 | 1 | 8220 | 9 | chr3D.!!$F2 | 8219 |
3 | TraesCS3B01G367500 | chr3A | 583239150 | 583246746 | 7596 | False | 1559.333333 | 3210 | 86.612500 | 1 | 8259 | 6 | chr3A.!!$F1 | 8258 |
4 | TraesCS3B01G367500 | chr1D | 403728744 | 403729582 | 838 | True | 252.000000 | 252 | 72.822000 | 5888 | 6725 | 1 | chr1D.!!$R1 | 837 |
5 | TraesCS3B01G367500 | chr1B | 543179460 | 543180298 | 838 | True | 230.000000 | 230 | 72.390000 | 5888 | 6725 | 1 | chr1B.!!$R1 | 837 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
363 | 387 | 0.109597 | GGATGTTTTCGTGCCTGCAG | 60.110 | 55.000 | 6.78 | 6.78 | 0.00 | 4.41 | F |
1172 | 1430 | 0.108138 | ACATGTACCAAGCCTCGCTC | 60.108 | 55.000 | 0.00 | 0.00 | 38.25 | 5.03 | F |
1813 | 2121 | 0.737219 | GGCCGCGTCTCTTAGAGTAA | 59.263 | 55.000 | 9.25 | 0.00 | 0.00 | 2.24 | F |
1815 | 2123 | 1.401199 | GCCGCGTCTCTTAGAGTAACT | 59.599 | 52.381 | 9.25 | 0.00 | 0.00 | 2.24 | F |
1816 | 2124 | 2.539344 | GCCGCGTCTCTTAGAGTAACTC | 60.539 | 54.545 | 9.25 | 0.00 | 0.00 | 3.01 | F |
1858 | 2168 | 2.680577 | GAACCACGTAACACCCTGTAG | 58.319 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 | F |
2013 | 2352 | 5.106038 | TGCATGATGATTGTTTGAGAAGTCC | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 | F |
2052 | 2392 | 5.116882 | ACTAGGAATTTTGTGAGCGGATAC | 58.883 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 | F |
4180 | 4611 | 6.428159 | GTCTAGTGGTTTGATCTGTCAATTGT | 59.572 | 38.462 | 5.13 | 0.00 | 43.49 | 2.71 | F |
5355 | 5816 | 0.331954 | TTCAGCTCTACTCCCTCCGT | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 | F |
6311 | 6793 | 0.382515 | CTCCTCGGTCGATCAGTTCC | 59.617 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1248 | 1509 | 0.315568 | GTCACCACTGCTTCGTCTCT | 59.684 | 55.000 | 0.00 | 0.0 | 0.00 | 3.10 | R |
2052 | 2392 | 1.151668 | CTCCTGGTGAGCGTTTTGAG | 58.848 | 55.000 | 0.00 | 0.0 | 33.47 | 3.02 | R |
3625 | 4044 | 2.791256 | CAACGCTATTGGGCACGG | 59.209 | 61.111 | 0.00 | 0.0 | 0.00 | 4.94 | R |
3806 | 4232 | 4.837860 | GGATCTCTCTCTCTCTCTCTCTCT | 59.162 | 50.000 | 0.00 | 0.0 | 0.00 | 3.10 | R |
3903 | 4333 | 4.069869 | GGAGCTGAGCTGCAACAA | 57.930 | 55.556 | 21.41 | 0.0 | 46.16 | 2.83 | R |
4025 | 4455 | 4.101448 | AGCGCCCCAGATCACCAC | 62.101 | 66.667 | 2.29 | 0.0 | 0.00 | 4.16 | R |
4180 | 4611 | 3.650950 | GGGCTGGGCTTGTCCTCA | 61.651 | 66.667 | 0.00 | 0.0 | 34.39 | 3.86 | R |
4193 | 4624 | 2.177888 | AGGTGAAAAAGAGGAAAGGGCT | 59.822 | 45.455 | 0.00 | 0.0 | 0.00 | 5.19 | R |
6013 | 6492 | 0.329261 | TGAAATCACTGGAGCCCTGG | 59.671 | 55.000 | 0.00 | 0.0 | 0.00 | 4.45 | R |
6598 | 7080 | 0.246635 | ACTCCGATTTCACTGACGGG | 59.753 | 55.000 | 0.00 | 0.0 | 44.57 | 5.28 | R |
7914 | 8654 | 0.179468 | TAAATAGTGTGCGCCCTCCC | 59.821 | 55.000 | 4.18 | 0.0 | 0.00 | 4.30 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 3.059120 | GTCAGCTATACGTGCGATAGACA | 60.059 | 47.826 | 7.82 | 0.00 | 39.76 | 3.41 |
38 | 39 | 0.885879 | TGCGATAGACAGTGACGGTT | 59.114 | 50.000 | 0.00 | 0.00 | 39.76 | 4.44 |
48 | 49 | 1.455786 | CAGTGACGGTTTGCTTAGACG | 59.544 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
55 | 56 | 2.280628 | GGTTTGCTTAGACGGATCCAG | 58.719 | 52.381 | 13.41 | 7.30 | 0.00 | 3.86 |
109 | 111 | 0.819582 | GGTCAACGTTATCCCCTCGA | 59.180 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
138 | 140 | 6.441274 | TCGTCCAAATGTATATACGTCCTTC | 58.559 | 40.000 | 8.05 | 0.00 | 0.00 | 3.46 |
139 | 141 | 6.263842 | TCGTCCAAATGTATATACGTCCTTCT | 59.736 | 38.462 | 8.05 | 0.00 | 0.00 | 2.85 |
140 | 142 | 6.581542 | CGTCCAAATGTATATACGTCCTTCTC | 59.418 | 42.308 | 8.05 | 0.00 | 0.00 | 2.87 |
157 | 159 | 1.754803 | TCTCCTCATCGGTGCGTATTT | 59.245 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
279 | 301 | 0.867746 | GAAGATGAGCACGCACACAA | 59.132 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
283 | 305 | 2.095567 | AGATGAGCACGCACACAATTTC | 60.096 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
285 | 307 | 0.310543 | GAGCACGCACACAATTTCCA | 59.689 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
308 | 332 | 7.453439 | TCCATTTCAAGATATACCTCATCCGTA | 59.547 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
309 | 333 | 8.260818 | CCATTTCAAGATATACCTCATCCGTAT | 58.739 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
329 | 353 | 9.701098 | TCCGTATCATAATATAAGAGCGTTTTT | 57.299 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
344 | 368 | 2.222640 | CGTTTTTGATACTACACCGCCG | 60.223 | 50.000 | 0.00 | 0.00 | 0.00 | 6.46 |
358 | 382 | 2.178273 | GCCGGATGTTTTCGTGCC | 59.822 | 61.111 | 5.05 | 0.00 | 0.00 | 5.01 |
359 | 383 | 2.332654 | GCCGGATGTTTTCGTGCCT | 61.333 | 57.895 | 5.05 | 0.00 | 0.00 | 4.75 |
360 | 384 | 1.501741 | CCGGATGTTTTCGTGCCTG | 59.498 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
361 | 385 | 1.154225 | CGGATGTTTTCGTGCCTGC | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
362 | 386 | 1.851021 | CGGATGTTTTCGTGCCTGCA | 61.851 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
363 | 387 | 0.109597 | GGATGTTTTCGTGCCTGCAG | 60.110 | 55.000 | 6.78 | 6.78 | 0.00 | 4.41 |
364 | 388 | 0.593128 | GATGTTTTCGTGCCTGCAGT | 59.407 | 50.000 | 13.81 | 0.00 | 0.00 | 4.40 |
392 | 417 | 3.065233 | GCATGAACTTGCACGATCCATAA | 59.935 | 43.478 | 0.00 | 0.00 | 42.31 | 1.90 |
476 | 507 | 2.127118 | GTGCAGTGACACGCATGC | 60.127 | 61.111 | 21.80 | 16.62 | 40.89 | 4.06 |
477 | 508 | 2.591144 | TGCAGTGACACGCATGCA | 60.591 | 55.556 | 19.57 | 14.91 | 45.82 | 3.96 |
478 | 509 | 1.967494 | TGCAGTGACACGCATGCAT | 60.967 | 52.632 | 19.57 | 0.00 | 43.34 | 3.96 |
479 | 510 | 1.513373 | GCAGTGACACGCATGCATG | 60.513 | 57.895 | 22.70 | 22.70 | 38.54 | 4.06 |
514 | 545 | 0.179166 | TACGGCTTTAGCGTGTACCG | 60.179 | 55.000 | 8.63 | 8.63 | 45.86 | 4.02 |
535 | 566 | 4.436852 | CCGCCAGTACATGTAATTTGTCAC | 60.437 | 45.833 | 7.25 | 0.00 | 0.00 | 3.67 |
551 | 582 | 2.040544 | CACACGGTTCCCCTGATGC | 61.041 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
573 | 604 | 1.608336 | TCAAGTCGATCCACCGGGT | 60.608 | 57.895 | 6.32 | 0.00 | 34.93 | 5.28 |
589 | 624 | 1.153958 | GGTACTCCGCGTGTGGTAC | 60.154 | 63.158 | 4.92 | 15.64 | 35.27 | 3.34 |
595 | 630 | 2.433664 | CGCGTGTGGTACTTCCCC | 60.434 | 66.667 | 0.00 | 0.00 | 34.77 | 4.81 |
679 | 714 | 0.383231 | ACTACCAGGTACGTATGCGC | 59.617 | 55.000 | 0.00 | 0.00 | 42.83 | 6.09 |
697 | 733 | 2.888534 | GCGCGGGCGTCTGAATTA | 60.889 | 61.111 | 9.31 | 0.00 | 42.09 | 1.40 |
775 | 820 | 1.574134 | GTGTGTTTCGTTCCTCCGAA | 58.426 | 50.000 | 0.00 | 0.00 | 44.43 | 4.30 |
776 | 821 | 1.525619 | GTGTGTTTCGTTCCTCCGAAG | 59.474 | 52.381 | 0.00 | 0.00 | 46.35 | 3.79 |
777 | 822 | 1.409790 | TGTGTTTCGTTCCTCCGAAGA | 59.590 | 47.619 | 0.00 | 0.00 | 46.35 | 2.87 |
779 | 824 | 3.064931 | GTGTTTCGTTCCTCCGAAGAAT | 58.935 | 45.455 | 0.00 | 0.00 | 46.35 | 2.40 |
780 | 825 | 3.123116 | GTGTTTCGTTCCTCCGAAGAATC | 59.877 | 47.826 | 0.00 | 0.00 | 46.35 | 2.52 |
781 | 826 | 3.006537 | TGTTTCGTTCCTCCGAAGAATCT | 59.993 | 43.478 | 0.00 | 0.00 | 46.35 | 2.40 |
824 | 872 | 3.256960 | AGGTCCACGTGGCCCAAT | 61.257 | 61.111 | 34.44 | 14.17 | 35.16 | 3.16 |
859 | 908 | 1.070577 | CACAGTACAACGCAAGCACTC | 60.071 | 52.381 | 0.00 | 0.00 | 45.62 | 3.51 |
866 | 915 | 6.640907 | CAGTACAACGCAAGCACTCATATATA | 59.359 | 38.462 | 0.00 | 0.00 | 45.62 | 0.86 |
867 | 916 | 7.169140 | CAGTACAACGCAAGCACTCATATATAA | 59.831 | 37.037 | 0.00 | 0.00 | 45.62 | 0.98 |
868 | 917 | 6.918892 | ACAACGCAAGCACTCATATATAAA | 57.081 | 33.333 | 0.00 | 0.00 | 45.62 | 1.40 |
871 | 920 | 5.611374 | ACGCAAGCACTCATATATAAAGGT | 58.389 | 37.500 | 0.00 | 0.00 | 45.62 | 3.50 |
875 | 924 | 8.808529 | CGCAAGCACTCATATATAAAGGTATAC | 58.191 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
892 | 941 | 9.998106 | AAAGGTATACACTCATCGCTATAAATT | 57.002 | 29.630 | 5.01 | 0.00 | 0.00 | 1.82 |
893 | 942 | 9.640963 | AAGGTATACACTCATCGCTATAAATTC | 57.359 | 33.333 | 5.01 | 0.00 | 0.00 | 2.17 |
895 | 944 | 9.587772 | GGTATACACTCATCGCTATAAATTCAT | 57.412 | 33.333 | 5.01 | 0.00 | 0.00 | 2.57 |
902 | 951 | 7.819900 | ACTCATCGCTATAAATTCATCTTACCC | 59.180 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
903 | 952 | 7.676004 | TCATCGCTATAAATTCATCTTACCCA | 58.324 | 34.615 | 0.00 | 0.00 | 0.00 | 4.51 |
905 | 954 | 9.599866 | CATCGCTATAAATTCATCTTACCCATA | 57.400 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
907 | 956 | 9.599866 | TCGCTATAAATTCATCTTACCCATATG | 57.400 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
908 | 957 | 9.599866 | CGCTATAAATTCATCTTACCCATATGA | 57.400 | 33.333 | 3.65 | 0.00 | 0.00 | 2.15 |
941 | 1002 | 4.780021 | AGAGACTGAACCAACATACCATCT | 59.220 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
957 | 1018 | 8.041323 | ACATACCATCTTGAGATTTTACGAAGT | 58.959 | 33.333 | 0.00 | 0.00 | 37.29 | 3.01 |
960 | 1021 | 6.369065 | ACCATCTTGAGATTTTACGAAGTCAC | 59.631 | 38.462 | 0.00 | 0.00 | 35.39 | 3.67 |
964 | 1027 | 8.107399 | TCTTGAGATTTTACGAAGTCACTAGA | 57.893 | 34.615 | 0.00 | 0.00 | 43.93 | 2.43 |
997 | 1061 | 1.080025 | CGAAACGTCTCCTCCCACC | 60.080 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
998 | 1062 | 1.080025 | GAAACGTCTCCTCCCACCG | 60.080 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
1001 | 1065 | 0.903454 | AACGTCTCCTCCCACCGAAT | 60.903 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1043 | 1108 | 6.407299 | CCTGCAATAAATCCAGGTTAAATGCT | 60.407 | 38.462 | 10.12 | 0.00 | 40.92 | 3.79 |
1044 | 1109 | 6.945218 | TGCAATAAATCCAGGTTAAATGCTT | 58.055 | 32.000 | 10.12 | 0.00 | 32.67 | 3.91 |
1053 | 1118 | 6.672593 | TCCAGGTTAAATGCTTATTCCATCT | 58.327 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1062 | 1127 | 3.070734 | TGCTTATTCCATCTGCTCCTCTC | 59.929 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
1068 | 1133 | 3.947868 | TCCATCTGCTCCTCTCTTTTTG | 58.052 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
1069 | 1134 | 3.328931 | TCCATCTGCTCCTCTCTTTTTGT | 59.671 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1070 | 1135 | 3.688673 | CCATCTGCTCCTCTCTTTTTGTC | 59.311 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1071 | 1136 | 3.409026 | TCTGCTCCTCTCTTTTTGTCC | 57.591 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1072 | 1137 | 2.039084 | TCTGCTCCTCTCTTTTTGTCCC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1074 | 1139 | 1.002087 | GCTCCTCTCTTTTTGTCCCGA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
1075 | 1140 | 2.355209 | GCTCCTCTCTTTTTGTCCCGAT | 60.355 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1118 | 1183 | 9.837681 | TCCATATGAATGAATAGGGTTAGAGTA | 57.162 | 33.333 | 3.65 | 0.00 | 35.81 | 2.59 |
1137 | 1391 | 1.299541 | AAGTGAACTTGTGCACGAGG | 58.700 | 50.000 | 32.56 | 18.05 | 39.88 | 4.63 |
1163 | 1417 | 0.320050 | TCGCAGCAGACATGTACCAA | 59.680 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1168 | 1422 | 1.065854 | AGCAGACATGTACCAAGCCTC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
1172 | 1430 | 0.108138 | ACATGTACCAAGCCTCGCTC | 60.108 | 55.000 | 0.00 | 0.00 | 38.25 | 5.03 |
1176 | 1434 | 2.273179 | TACCAAGCCTCGCTCGTGT | 61.273 | 57.895 | 0.00 | 0.00 | 38.25 | 4.49 |
1248 | 1509 | 1.203212 | TCTTTACAGAACCGAGGGGGA | 60.203 | 52.381 | 0.00 | 0.00 | 39.97 | 4.81 |
1372 | 1635 | 6.148315 | TGAGAACTGCATATTCTTGTTCACAG | 59.852 | 38.462 | 13.10 | 0.00 | 39.33 | 3.66 |
1443 | 1744 | 6.385649 | AATTAACAATAAATCCGCGATGGT | 57.614 | 33.333 | 8.23 | 0.00 | 39.52 | 3.55 |
1472 | 1773 | 7.209471 | TGTCCACTTTAAATATTTTCTGCGT | 57.791 | 32.000 | 5.91 | 0.00 | 0.00 | 5.24 |
1510 | 1811 | 1.406887 | GCGCAGGAGAATAGGGACAAA | 60.407 | 52.381 | 0.30 | 0.00 | 0.00 | 2.83 |
1524 | 1825 | 4.781934 | AGGGACAAACTGCTGGAATATAC | 58.218 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
1525 | 1826 | 4.475016 | AGGGACAAACTGCTGGAATATACT | 59.525 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
1526 | 1827 | 4.816925 | GGGACAAACTGCTGGAATATACTC | 59.183 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
1529 | 1830 | 4.475016 | ACAAACTGCTGGAATATACTCCCT | 59.525 | 41.667 | 0.00 | 0.00 | 34.22 | 4.20 |
1534 | 1835 | 5.540719 | ACTGCTGGAATATACTCCCTTAGAC | 59.459 | 44.000 | 0.00 | 0.00 | 34.22 | 2.59 |
1538 | 1839 | 6.645790 | TGGAATATACTCCCTTAGACGTTC | 57.354 | 41.667 | 0.00 | 0.00 | 34.22 | 3.95 |
1544 | 1845 | 3.083293 | ACTCCCTTAGACGTTCAGAGAC | 58.917 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1547 | 1848 | 2.820787 | CCCTTAGACGTTCAGAGACAGT | 59.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1552 | 1853 | 3.215151 | AGACGTTCAGAGACAGTGAGAA | 58.785 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
1555 | 1856 | 3.381908 | ACGTTCAGAGACAGTGAGAAAGT | 59.618 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
1557 | 1858 | 4.054671 | GTTCAGAGACAGTGAGAAAGTGG | 58.945 | 47.826 | 0.00 | 0.00 | 33.04 | 4.00 |
1614 | 1921 | 2.239150 | GGAAGGAGGGAGGGTAAAGAAC | 59.761 | 54.545 | 0.00 | 0.00 | 0.00 | 3.01 |
1615 | 1922 | 3.182976 | GAAGGAGGGAGGGTAAAGAACT | 58.817 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1616 | 1923 | 4.359996 | GAAGGAGGGAGGGTAAAGAACTA | 58.640 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
1623 | 1930 | 6.030082 | AGGGAGGGTAAAGAACTAAAGATGA | 58.970 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1706 | 2013 | 2.700897 | ACGGAGATACCCAAGATGGAAG | 59.299 | 50.000 | 0.00 | 0.00 | 40.96 | 3.46 |
1724 | 2031 | 6.254281 | TGGAAGTGCATCTTTAGCTTTTAC | 57.746 | 37.500 | 0.00 | 0.00 | 36.40 | 2.01 |
1780 | 2087 | 6.439375 | TGTGTCTAGTTACATCCATGTACCTT | 59.561 | 38.462 | 2.48 | 0.00 | 42.48 | 3.50 |
1813 | 2121 | 0.737219 | GGCCGCGTCTCTTAGAGTAA | 59.263 | 55.000 | 9.25 | 0.00 | 0.00 | 2.24 |
1814 | 2122 | 1.533547 | GGCCGCGTCTCTTAGAGTAAC | 60.534 | 57.143 | 9.25 | 0.18 | 0.00 | 2.50 |
1815 | 2123 | 1.401199 | GCCGCGTCTCTTAGAGTAACT | 59.599 | 52.381 | 9.25 | 0.00 | 0.00 | 2.24 |
1816 | 2124 | 2.539344 | GCCGCGTCTCTTAGAGTAACTC | 60.539 | 54.545 | 9.25 | 0.00 | 0.00 | 3.01 |
1817 | 2125 | 2.937799 | CCGCGTCTCTTAGAGTAACTCT | 59.062 | 50.000 | 9.25 | 0.00 | 43.83 | 3.24 |
1818 | 2126 | 3.374678 | CCGCGTCTCTTAGAGTAACTCTT | 59.625 | 47.826 | 9.25 | 0.00 | 41.50 | 2.85 |
1819 | 2127 | 4.142643 | CCGCGTCTCTTAGAGTAACTCTTT | 60.143 | 45.833 | 9.25 | 0.00 | 41.50 | 2.52 |
1820 | 2128 | 5.392286 | CGCGTCTCTTAGAGTAACTCTTTT | 58.608 | 41.667 | 9.25 | 0.00 | 41.50 | 2.27 |
1821 | 2129 | 5.857517 | CGCGTCTCTTAGAGTAACTCTTTTT | 59.142 | 40.000 | 9.25 | 0.00 | 41.50 | 1.94 |
1858 | 2168 | 2.680577 | GAACCACGTAACACCCTGTAG | 58.319 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
2007 | 2346 | 9.791820 | TTAATTAGTGCATGATGATTGTTTGAG | 57.208 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
2013 | 2352 | 5.106038 | TGCATGATGATTGTTTGAGAAGTCC | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2052 | 2392 | 5.116882 | ACTAGGAATTTTGTGAGCGGATAC | 58.883 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
4180 | 4611 | 6.428159 | GTCTAGTGGTTTGATCTGTCAATTGT | 59.572 | 38.462 | 5.13 | 0.00 | 43.49 | 2.71 |
4193 | 4624 | 1.144708 | TCAATTGTGAGGACAAGCCCA | 59.855 | 47.619 | 5.13 | 0.00 | 45.29 | 5.36 |
4241 | 4672 | 0.953727 | TGGCTAAAACTGCTGTGCTG | 59.046 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
4341 | 4791 | 4.042809 | TCTGCTCAATTTGGGAAGGAAGTA | 59.957 | 41.667 | 4.36 | 0.00 | 0.00 | 2.24 |
4449 | 4902 | 1.202758 | TGATCGGCTTCTGGTGTTGTT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
4457 | 4910 | 2.772568 | TCTGGTGTTGTTTGATTGCG | 57.227 | 45.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4458 | 4911 | 1.130955 | CTGGTGTTGTTTGATTGCGC | 58.869 | 50.000 | 0.00 | 0.00 | 0.00 | 6.09 |
5071 | 5530 | 2.098117 | GCTCTTTGTGTGCTGTTCTTGT | 59.902 | 45.455 | 0.00 | 0.00 | 32.89 | 3.16 |
5091 | 5550 | 2.231964 | GTGCCTTGCATGATTTCTTCCA | 59.768 | 45.455 | 0.00 | 0.00 | 41.91 | 3.53 |
5122 | 5581 | 2.107378 | TCACATGGGGTTGAAAGCTACA | 59.893 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
5132 | 5591 | 7.234577 | TGGGGTTGAAAGCTACAGATTTTTATT | 59.765 | 33.333 | 0.00 | 0.00 | 33.35 | 1.40 |
5133 | 5592 | 8.094548 | GGGGTTGAAAGCTACAGATTTTTATTT | 58.905 | 33.333 | 0.00 | 0.00 | 33.35 | 1.40 |
5134 | 5593 | 9.489084 | GGGTTGAAAGCTACAGATTTTTATTTT | 57.511 | 29.630 | 0.00 | 0.00 | 33.35 | 1.82 |
5227 | 5688 | 7.043961 | TGGAACTGTGTTAATATTTGTTGCA | 57.956 | 32.000 | 0.00 | 0.00 | 33.34 | 4.08 |
5228 | 5689 | 6.920758 | TGGAACTGTGTTAATATTTGTTGCAC | 59.079 | 34.615 | 0.00 | 0.00 | 31.46 | 4.57 |
5238 | 5699 | 9.341899 | GTTAATATTTGTTGCACTTCCTGTTAG | 57.658 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
5348 | 5809 | 5.317733 | ACATACTGTGTTCAGCTCTACTC | 57.682 | 43.478 | 0.00 | 0.00 | 44.77 | 2.59 |
5349 | 5810 | 4.158764 | ACATACTGTGTTCAGCTCTACTCC | 59.841 | 45.833 | 0.00 | 0.00 | 44.77 | 3.85 |
5350 | 5811 | 1.896465 | ACTGTGTTCAGCTCTACTCCC | 59.104 | 52.381 | 0.00 | 0.00 | 44.77 | 4.30 |
5351 | 5812 | 2.175202 | CTGTGTTCAGCTCTACTCCCT | 58.825 | 52.381 | 0.00 | 0.00 | 34.79 | 4.20 |
5352 | 5813 | 2.165437 | CTGTGTTCAGCTCTACTCCCTC | 59.835 | 54.545 | 0.00 | 0.00 | 34.79 | 4.30 |
5353 | 5814 | 1.478916 | GTGTTCAGCTCTACTCCCTCC | 59.521 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
5354 | 5815 | 0.741915 | GTTCAGCTCTACTCCCTCCG | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5355 | 5816 | 0.331954 | TTCAGCTCTACTCCCTCCGT | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5356 | 5817 | 0.331954 | TCAGCTCTACTCCCTCCGTT | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
5357 | 5818 | 1.187087 | CAGCTCTACTCCCTCCGTTT | 58.813 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
5358 | 5819 | 1.550976 | CAGCTCTACTCCCTCCGTTTT | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
5359 | 5820 | 2.758979 | CAGCTCTACTCCCTCCGTTTTA | 59.241 | 50.000 | 0.00 | 0.00 | 0.00 | 1.52 |
5360 | 5821 | 3.194968 | CAGCTCTACTCCCTCCGTTTTAA | 59.805 | 47.826 | 0.00 | 0.00 | 0.00 | 1.52 |
5361 | 5822 | 3.836562 | AGCTCTACTCCCTCCGTTTTAAA | 59.163 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
5362 | 5823 | 4.470304 | AGCTCTACTCCCTCCGTTTTAAAT | 59.530 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
5363 | 5824 | 5.045797 | AGCTCTACTCCCTCCGTTTTAAATT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5364 | 5825 | 6.155737 | AGCTCTACTCCCTCCGTTTTAAATTA | 59.844 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
5365 | 5826 | 6.479331 | GCTCTACTCCCTCCGTTTTAAATTAG | 59.521 | 42.308 | 0.00 | 0.00 | 0.00 | 1.73 |
5366 | 5827 | 7.632245 | GCTCTACTCCCTCCGTTTTAAATTAGA | 60.632 | 40.741 | 0.00 | 0.00 | 0.00 | 2.10 |
5367 | 5828 | 8.315220 | TCTACTCCCTCCGTTTTAAATTAGAT | 57.685 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
5368 | 5829 | 8.202137 | TCTACTCCCTCCGTTTTAAATTAGATG | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
5369 | 5830 | 6.954232 | ACTCCCTCCGTTTTAAATTAGATGA | 58.046 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
5370 | 5831 | 7.574607 | ACTCCCTCCGTTTTAAATTAGATGAT | 58.425 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
5371 | 5832 | 7.715686 | ACTCCCTCCGTTTTAAATTAGATGATC | 59.284 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
5372 | 5833 | 6.996282 | TCCCTCCGTTTTAAATTAGATGATCC | 59.004 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
5373 | 5834 | 6.770785 | CCCTCCGTTTTAAATTAGATGATCCA | 59.229 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
5374 | 5835 | 7.284489 | CCCTCCGTTTTAAATTAGATGATCCAA | 59.716 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
5375 | 5836 | 8.129211 | CCTCCGTTTTAAATTAGATGATCCAAC | 58.871 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
5376 | 5837 | 8.801882 | TCCGTTTTAAATTAGATGATCCAACT | 57.198 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
5377 | 5838 | 9.238368 | TCCGTTTTAAATTAGATGATCCAACTT | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
5378 | 5839 | 9.855021 | CCGTTTTAAATTAGATGATCCAACTTT | 57.145 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
5418 | 5879 | 8.893563 | ATAAAGTTGGGTCATCTATTTTGGAA | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
5419 | 5880 | 6.590234 | AAGTTGGGTCATCTATTTTGGAAC | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
5420 | 5881 | 4.700213 | AGTTGGGTCATCTATTTTGGAACG | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
5421 | 5882 | 3.616219 | TGGGTCATCTATTTTGGAACGG | 58.384 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
5422 | 5883 | 3.264706 | TGGGTCATCTATTTTGGAACGGA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
5423 | 5884 | 3.877508 | GGGTCATCTATTTTGGAACGGAG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
5424 | 5885 | 3.877508 | GGTCATCTATTTTGGAACGGAGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5425 | 5886 | 3.877508 | GTCATCTATTTTGGAACGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5426 | 5887 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
5427 | 5888 | 3.906720 | TCTATTTTGGAACGGAGGGAG | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
5428 | 5889 | 3.178865 | TCTATTTTGGAACGGAGGGAGT | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
5429 | 5890 | 4.355549 | TCTATTTTGGAACGGAGGGAGTA | 58.644 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
5430 | 5891 | 2.845363 | TTTTGGAACGGAGGGAGTAC | 57.155 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5431 | 5892 | 2.019807 | TTTGGAACGGAGGGAGTACT | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5437 | 5898 | 4.166725 | TGGAACGGAGGGAGTACTATTCTA | 59.833 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
5450 | 5911 | 8.905850 | GGAGTACTATTCTAGTTACTGAAAGCT | 58.094 | 37.037 | 0.00 | 0.00 | 40.14 | 3.74 |
5460 | 5921 | 2.191128 | ACTGAAAGCTAGTTGGCCTG | 57.809 | 50.000 | 3.32 | 0.00 | 37.60 | 4.85 |
5463 | 5924 | 1.699634 | TGAAAGCTAGTTGGCCTGACT | 59.300 | 47.619 | 15.21 | 15.21 | 0.00 | 3.41 |
5464 | 5925 | 2.106511 | TGAAAGCTAGTTGGCCTGACTT | 59.893 | 45.455 | 15.92 | 3.45 | 0.00 | 3.01 |
5465 | 5926 | 2.959465 | AAGCTAGTTGGCCTGACTTT | 57.041 | 45.000 | 15.92 | 4.12 | 0.00 | 2.66 |
5476 | 5938 | 4.282496 | TGGCCTGACTTTTAAAAGGTTGA | 58.718 | 39.130 | 27.23 | 10.41 | 40.31 | 3.18 |
5488 | 5950 | 3.810310 | AAAGGTTGAAAATTGACGGCA | 57.190 | 38.095 | 0.00 | 0.00 | 0.00 | 5.69 |
5489 | 5951 | 4.335400 | AAAGGTTGAAAATTGACGGCAT | 57.665 | 36.364 | 0.00 | 0.00 | 0.00 | 4.40 |
5490 | 5952 | 5.461032 | AAAGGTTGAAAATTGACGGCATA | 57.539 | 34.783 | 0.00 | 0.00 | 0.00 | 3.14 |
5491 | 5953 | 4.434713 | AGGTTGAAAATTGACGGCATAC | 57.565 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
5492 | 5954 | 3.823873 | AGGTTGAAAATTGACGGCATACA | 59.176 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
5493 | 5955 | 3.917985 | GGTTGAAAATTGACGGCATACAC | 59.082 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
5494 | 5956 | 3.840890 | TGAAAATTGACGGCATACACC | 57.159 | 42.857 | 0.00 | 0.00 | 0.00 | 4.16 |
5495 | 5957 | 3.149981 | TGAAAATTGACGGCATACACCA | 58.850 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
5497 | 5959 | 3.781079 | AAATTGACGGCATACACCATG | 57.219 | 42.857 | 0.00 | 0.00 | 37.73 | 3.66 |
5498 | 5960 | 2.418368 | ATTGACGGCATACACCATGT | 57.582 | 45.000 | 0.00 | 0.00 | 36.95 | 3.21 |
5499 | 5961 | 3.552132 | ATTGACGGCATACACCATGTA | 57.448 | 42.857 | 0.00 | 0.00 | 37.24 | 2.29 |
5500 | 5962 | 3.552132 | TTGACGGCATACACCATGTAT | 57.448 | 42.857 | 0.00 | 0.00 | 43.81 | 2.29 |
5549 | 6011 | 1.671379 | GACTGCGTTCAAGGGGGTC | 60.671 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
5574 | 6036 | 4.444022 | CCTGCTAGTCTGGCATCTATGTTT | 60.444 | 45.833 | 11.71 | 0.00 | 39.07 | 2.83 |
5575 | 6037 | 4.445453 | TGCTAGTCTGGCATCTATGTTTG | 58.555 | 43.478 | 6.82 | 0.00 | 34.56 | 2.93 |
5576 | 6038 | 4.162131 | TGCTAGTCTGGCATCTATGTTTGA | 59.838 | 41.667 | 6.82 | 0.00 | 34.56 | 2.69 |
5577 | 6039 | 4.509600 | GCTAGTCTGGCATCTATGTTTGAC | 59.490 | 45.833 | 2.85 | 0.00 | 0.00 | 3.18 |
5580 | 6042 | 5.316167 | AGTCTGGCATCTATGTTTGACAAA | 58.684 | 37.500 | 0.00 | 0.00 | 28.49 | 2.83 |
5582 | 6044 | 6.435277 | AGTCTGGCATCTATGTTTGACAAATT | 59.565 | 34.615 | 3.49 | 0.00 | 28.49 | 1.82 |
5583 | 6045 | 6.529125 | GTCTGGCATCTATGTTTGACAAATTG | 59.471 | 38.462 | 3.49 | 0.00 | 28.49 | 2.32 |
5584 | 6046 | 6.433716 | TCTGGCATCTATGTTTGACAAATTGA | 59.566 | 34.615 | 3.49 | 1.47 | 28.49 | 2.57 |
5585 | 6047 | 6.623486 | TGGCATCTATGTTTGACAAATTGAG | 58.377 | 36.000 | 3.49 | 2.26 | 0.00 | 3.02 |
5617 | 6081 | 2.159627 | CGGCTATTTCAGTGTGACCAAC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
5622 | 6086 | 5.701290 | GCTATTTCAGTGTGACCAACTAGTT | 59.299 | 40.000 | 1.12 | 1.12 | 0.00 | 2.24 |
5625 | 6089 | 6.827586 | TTTCAGTGTGACCAACTAGTTTTT | 57.172 | 33.333 | 5.07 | 0.00 | 0.00 | 1.94 |
5658 | 6122 | 7.454225 | TGATAGTCTAGAGCAGCTACTAATCA | 58.546 | 38.462 | 6.83 | 8.23 | 0.00 | 2.57 |
5659 | 6123 | 7.939588 | TGATAGTCTAGAGCAGCTACTAATCAA | 59.060 | 37.037 | 6.83 | 0.00 | 0.00 | 2.57 |
5763 | 6232 | 4.613437 | AGCCCTACAATTGATCCATGTTT | 58.387 | 39.130 | 13.59 | 0.00 | 0.00 | 2.83 |
5986 | 6465 | 4.566488 | GGCTTGCCAATATATCCTGCTAGT | 60.566 | 45.833 | 6.79 | 0.00 | 0.00 | 2.57 |
5995 | 6474 | 7.772292 | CCAATATATCCTGCTAGTGTATGCAAT | 59.228 | 37.037 | 0.00 | 0.00 | 38.81 | 3.56 |
6085 | 6567 | 9.618890 | CTTCTGAATGGAAATGGTCTTTATCTA | 57.381 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
6252 | 6734 | 3.559171 | GGGATGCTAAAACAGTCTGACCA | 60.559 | 47.826 | 6.91 | 0.00 | 0.00 | 4.02 |
6271 | 6753 | 3.852578 | ACCATTTACTCCCTGGATTGAGT | 59.147 | 43.478 | 8.76 | 8.76 | 43.85 | 3.41 |
6311 | 6793 | 0.382515 | CTCCTCGGTCGATCAGTTCC | 59.617 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
6384 | 6866 | 1.082690 | GCCAACTCTAGCAGCAAGAC | 58.917 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6598 | 7080 | 2.029844 | GCAGTCTCCGACAGCAACC | 61.030 | 63.158 | 6.52 | 0.00 | 43.05 | 3.77 |
6621 | 7103 | 1.461127 | GTCAGTGAAATCGGAGTGTGC | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
6687 | 7175 | 3.230134 | CTCAGGGACTAAGATCTGGGAG | 58.770 | 54.545 | 0.00 | 0.00 | 36.02 | 4.30 |
6730 | 7218 | 3.063485 | GAGTTCAAGTTCCTCTGTCAGC | 58.937 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
6795 | 7283 | 4.513442 | TGTCAGGAATATTGGGAAGAACG | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
6805 | 7293 | 3.319137 | TGGGAAGAACGTCTGAATGAG | 57.681 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
6808 | 7296 | 4.466370 | TGGGAAGAACGTCTGAATGAGTAT | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
6809 | 7297 | 4.806247 | GGGAAGAACGTCTGAATGAGTATG | 59.194 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
6810 | 7298 | 4.268884 | GGAAGAACGTCTGAATGAGTATGC | 59.731 | 45.833 | 0.00 | 0.00 | 0.00 | 3.14 |
6817 | 7305 | 2.103771 | TCTGAATGAGTATGCTGCTCCC | 59.896 | 50.000 | 0.00 | 0.00 | 32.31 | 4.30 |
6826 | 7314 | 1.495579 | ATGCTGCTCCCTTCAGTGGT | 61.496 | 55.000 | 0.00 | 0.00 | 34.21 | 4.16 |
6847 | 7335 | 4.080863 | GGTAATTCACTCACTGGATCCACT | 60.081 | 45.833 | 11.44 | 0.00 | 0.00 | 4.00 |
6856 | 7344 | 0.107800 | CTGGATCCACTGCTCCTGTG | 60.108 | 60.000 | 11.44 | 0.00 | 33.98 | 3.66 |
6893 | 7381 | 5.186996 | TGATGTTTTTCAGCTCTCCAAAC | 57.813 | 39.130 | 0.00 | 0.00 | 33.14 | 2.93 |
6905 | 7393 | 3.008049 | GCTCTCCAAACTTTCTCCTGGTA | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
6928 | 7418 | 9.515226 | GGTAGGTATATTTAAATTGCTCATCCA | 57.485 | 33.333 | 5.91 | 0.00 | 0.00 | 3.41 |
6938 | 7428 | 6.845758 | AAATTGCTCATCCATTCTTGAGAA | 57.154 | 33.333 | 4.21 | 0.00 | 41.53 | 2.87 |
7087 | 7582 | 0.250901 | AAACTTCAGGCCAGACGCAT | 60.251 | 50.000 | 5.01 | 0.00 | 40.31 | 4.73 |
7137 | 7632 | 1.804151 | GTCTTCAACAACGCCATAGCA | 59.196 | 47.619 | 0.00 | 0.00 | 39.83 | 3.49 |
7365 | 7862 | 3.569548 | CTCATCGATTGTATACGCTGCT | 58.430 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
7366 | 7863 | 4.379499 | CCTCATCGATTGTATACGCTGCTA | 60.379 | 45.833 | 0.00 | 0.00 | 0.00 | 3.49 |
7439 | 7937 | 1.000233 | CCATGCAACTAAGCCCCCA | 60.000 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
7468 | 7966 | 6.187682 | CCCAATAAAGTTGGTGGAGATAAGT | 58.812 | 40.000 | 6.12 | 0.00 | 37.88 | 2.24 |
7508 | 8007 | 6.848451 | TGTTTGTTTGTTTGGAACTAGAGAC | 58.152 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
7511 | 8010 | 4.165372 | TGTTTGTTTGGAACTAGAGACCCT | 59.835 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
7516 | 8015 | 5.592688 | TGTTTGGAACTAGAGACCCTTTTTG | 59.407 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
7518 | 8017 | 4.969484 | TGGAACTAGAGACCCTTTTTGTC | 58.031 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
7519 | 8018 | 4.410883 | TGGAACTAGAGACCCTTTTTGTCA | 59.589 | 41.667 | 0.00 | 0.00 | 35.15 | 3.58 |
7520 | 8019 | 5.073144 | TGGAACTAGAGACCCTTTTTGTCAT | 59.927 | 40.000 | 0.00 | 0.00 | 35.15 | 3.06 |
7521 | 8020 | 5.644206 | GGAACTAGAGACCCTTTTTGTCATC | 59.356 | 44.000 | 0.00 | 0.00 | 35.15 | 2.92 |
7522 | 8021 | 6.441088 | AACTAGAGACCCTTTTTGTCATCT | 57.559 | 37.500 | 0.00 | 0.00 | 35.15 | 2.90 |
7523 | 8022 | 6.043854 | ACTAGAGACCCTTTTTGTCATCTC | 57.956 | 41.667 | 0.00 | 0.00 | 35.15 | 2.75 |
7525 | 8024 | 5.574970 | AGAGACCCTTTTTGTCATCTCTT | 57.425 | 39.130 | 0.00 | 0.00 | 39.89 | 2.85 |
7566 | 8072 | 8.850156 | ACAATGTAAGATCAGTTACTGCTTTTT | 58.150 | 29.630 | 7.61 | 2.39 | 34.51 | 1.94 |
7586 | 8092 | 5.871396 | TTTTCTGGTGTACTCTCTCTTGT | 57.129 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
7652 | 8158 | 2.048222 | GCGCACAGCAGTGGAGTA | 60.048 | 61.111 | 11.54 | 0.00 | 45.98 | 2.59 |
7654 | 8160 | 1.021390 | GCGCACAGCAGTGGAGTATT | 61.021 | 55.000 | 11.54 | 0.00 | 45.98 | 1.89 |
7657 | 8188 | 2.226437 | CGCACAGCAGTGGAGTATTTTT | 59.774 | 45.455 | 11.54 | 0.00 | 45.98 | 1.94 |
7704 | 8273 | 1.475280 | TCCATCAAGCATTCAAGCTGC | 59.525 | 47.619 | 0.00 | 0.00 | 45.89 | 5.25 |
7739 | 8476 | 7.815068 | ACTATTATTATTCAGTAGCTTGCTCCG | 59.185 | 37.037 | 0.00 | 0.00 | 0.00 | 4.63 |
7744 | 8481 | 1.067565 | TCAGTAGCTTGCTCCGTGAAG | 60.068 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
7747 | 8484 | 2.143925 | GTAGCTTGCTCCGTGAAGTTT | 58.856 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
7748 | 8485 | 0.947244 | AGCTTGCTCCGTGAAGTTTG | 59.053 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
7752 | 8490 | 3.682858 | GCTTGCTCCGTGAAGTTTGTATA | 59.317 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
7829 | 8568 | 1.207593 | CGTGTTTGCCAGCTGCTAC | 59.792 | 57.895 | 8.66 | 3.58 | 42.00 | 3.58 |
7830 | 8569 | 1.506309 | CGTGTTTGCCAGCTGCTACA | 61.506 | 55.000 | 8.66 | 6.28 | 42.00 | 2.74 |
7855 | 8594 | 2.738587 | TGGTGGCTAAAACTTGGTGA | 57.261 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7861 | 8600 | 3.572255 | TGGCTAAAACTTGGTGATGTTCC | 59.428 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
7862 | 8601 | 3.056821 | GGCTAAAACTTGGTGATGTTCCC | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.97 |
7900 | 8640 | 1.377856 | GAAACAGAGGGAGCAGGGC | 60.378 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
7901 | 8641 | 2.129555 | GAAACAGAGGGAGCAGGGCA | 62.130 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
7902 | 8642 | 1.719063 | AAACAGAGGGAGCAGGGCAA | 61.719 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
7903 | 8643 | 2.134630 | AACAGAGGGAGCAGGGCAAG | 62.135 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
7904 | 8644 | 3.013932 | AGAGGGAGCAGGGCAAGG | 61.014 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
7905 | 8645 | 4.811364 | GAGGGAGCAGGGCAAGGC | 62.811 | 72.222 | 0.00 | 0.00 | 0.00 | 4.35 |
7912 | 8652 | 3.333219 | CAGGGCAAGGCAGGGAGA | 61.333 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
7913 | 8653 | 3.013932 | AGGGCAAGGCAGGGAGAG | 61.014 | 66.667 | 0.00 | 0.00 | 0.00 | 3.20 |
7914 | 8654 | 4.120755 | GGGCAAGGCAGGGAGAGG | 62.121 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
7915 | 8655 | 4.120755 | GGCAAGGCAGGGAGAGGG | 62.121 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
7916 | 8656 | 4.120755 | GCAAGGCAGGGAGAGGGG | 62.121 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
7971 | 8711 | 3.161450 | GATGCTCCGGCCCTGGTA | 61.161 | 66.667 | 0.00 | 0.00 | 37.74 | 3.25 |
8027 | 8767 | 3.490759 | GCATGACTCGCGTGTGGG | 61.491 | 66.667 | 19.71 | 8.63 | 35.87 | 4.61 |
8029 | 8769 | 1.667830 | CATGACTCGCGTGTGGGTT | 60.668 | 57.895 | 19.71 | 0.00 | 0.00 | 4.11 |
8030 | 8770 | 1.374252 | ATGACTCGCGTGTGGGTTC | 60.374 | 57.895 | 19.71 | 4.26 | 0.00 | 3.62 |
8031 | 8771 | 1.816863 | ATGACTCGCGTGTGGGTTCT | 61.817 | 55.000 | 19.71 | 0.00 | 0.00 | 3.01 |
8032 | 8772 | 1.733399 | GACTCGCGTGTGGGTTCTC | 60.733 | 63.158 | 19.71 | 0.00 | 0.00 | 2.87 |
8033 | 8773 | 2.143594 | GACTCGCGTGTGGGTTCTCT | 62.144 | 60.000 | 19.71 | 0.00 | 0.00 | 3.10 |
8034 | 8774 | 1.444553 | CTCGCGTGTGGGTTCTCTC | 60.445 | 63.158 | 5.77 | 0.00 | 0.00 | 3.20 |
8035 | 8775 | 1.867919 | CTCGCGTGTGGGTTCTCTCT | 61.868 | 60.000 | 5.77 | 0.00 | 0.00 | 3.10 |
8036 | 8776 | 1.734477 | CGCGTGTGGGTTCTCTCTG | 60.734 | 63.158 | 0.00 | 0.00 | 0.00 | 3.35 |
8037 | 8777 | 2.029844 | GCGTGTGGGTTCTCTCTGC | 61.030 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
8038 | 8778 | 1.374758 | CGTGTGGGTTCTCTCTGCC | 60.375 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
8039 | 8779 | 1.003233 | GTGTGGGTTCTCTCTGCCC | 60.003 | 63.158 | 0.00 | 0.00 | 42.64 | 5.36 |
8040 | 8780 | 2.224159 | TGTGGGTTCTCTCTGCCCC | 61.224 | 63.158 | 0.00 | 0.00 | 41.66 | 5.80 |
8119 | 8859 | 3.152983 | CACGATTAATCAACACACGCAC | 58.847 | 45.455 | 15.57 | 0.00 | 0.00 | 5.34 |
8134 | 8874 | 2.125713 | CACGTGCGGATGTGCCTA | 60.126 | 61.111 | 16.60 | 0.00 | 32.36 | 3.93 |
8139 | 8879 | 1.668419 | GTGCGGATGTGCCTAGATTT | 58.332 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
8141 | 8881 | 2.016318 | TGCGGATGTGCCTAGATTTTG | 58.984 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
8142 | 8882 | 2.017049 | GCGGATGTGCCTAGATTTTGT | 58.983 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
8143 | 8883 | 2.032178 | GCGGATGTGCCTAGATTTTGTC | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
8144 | 8884 | 2.614057 | CGGATGTGCCTAGATTTTGTCC | 59.386 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
8145 | 8885 | 2.952310 | GGATGTGCCTAGATTTTGTCCC | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
8249 | 8993 | 2.315925 | TTCTTCAAGGCCGATGCTAG | 57.684 | 50.000 | 0.00 | 2.47 | 37.74 | 3.42 |
8259 | 9003 | 2.353607 | GATGCTAGGCGTCGGACG | 60.354 | 66.667 | 25.18 | 25.18 | 45.88 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 0.100682 | CGCACGTATAGCTGACTGGT | 59.899 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
8 | 9 | 3.135994 | TGTCTATCGCACGTATAGCTGA | 58.864 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
29 | 30 | 1.604693 | CCGTCTAAGCAAACCGTCACT | 60.605 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
38 | 39 | 2.416836 | CGAACTGGATCCGTCTAAGCAA | 60.417 | 50.000 | 7.39 | 0.00 | 0.00 | 3.91 |
48 | 49 | 1.227002 | GCGAGGACGAACTGGATCC | 60.227 | 63.158 | 4.20 | 4.20 | 42.66 | 3.36 |
55 | 56 | 0.446616 | GGAAAATGGCGAGGACGAAC | 59.553 | 55.000 | 0.00 | 0.00 | 42.66 | 3.95 |
109 | 111 | 6.035843 | ACGTATATACATTTGGACGAACGTT | 58.964 | 36.000 | 13.22 | 0.00 | 36.55 | 3.99 |
118 | 120 | 6.994221 | AGGAGAAGGACGTATATACATTTGG | 58.006 | 40.000 | 13.22 | 0.00 | 0.00 | 3.28 |
125 | 127 | 5.183969 | CCGATGAGGAGAAGGACGTATATA | 58.816 | 45.833 | 0.00 | 0.00 | 45.00 | 0.86 |
138 | 140 | 1.860950 | CAAATACGCACCGATGAGGAG | 59.139 | 52.381 | 0.00 | 0.00 | 45.00 | 3.69 |
139 | 141 | 1.478916 | TCAAATACGCACCGATGAGGA | 59.521 | 47.619 | 0.00 | 0.00 | 45.00 | 3.71 |
157 | 159 | 1.278127 | GATGTTTCCTCGACCCCTTCA | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
269 | 291 | 3.379240 | TGAAATGGAAATTGTGTGCGTG | 58.621 | 40.909 | 0.00 | 0.00 | 0.00 | 5.34 |
279 | 301 | 9.525826 | GGATGAGGTATATCTTGAAATGGAAAT | 57.474 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
283 | 305 | 6.467677 | ACGGATGAGGTATATCTTGAAATGG | 58.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
285 | 307 | 9.035890 | TGATACGGATGAGGTATATCTTGAAAT | 57.964 | 33.333 | 0.00 | 0.00 | 31.01 | 2.17 |
329 | 353 | 0.671796 | CATCCGGCGGTGTAGTATCA | 59.328 | 55.000 | 27.32 | 2.67 | 0.00 | 2.15 |
332 | 356 | 0.896923 | AAACATCCGGCGGTGTAGTA | 59.103 | 50.000 | 27.32 | 5.33 | 0.00 | 1.82 |
344 | 368 | 0.109597 | CTGCAGGCACGAAAACATCC | 60.110 | 55.000 | 5.57 | 0.00 | 0.00 | 3.51 |
358 | 382 | 0.110509 | GTTCATGCGTGTCACTGCAG | 60.111 | 55.000 | 21.13 | 13.48 | 45.52 | 4.41 |
359 | 383 | 0.532640 | AGTTCATGCGTGTCACTGCA | 60.533 | 50.000 | 19.65 | 19.65 | 46.51 | 4.41 |
360 | 384 | 0.588252 | AAGTTCATGCGTGTCACTGC | 59.412 | 50.000 | 5.68 | 11.34 | 0.00 | 4.40 |
361 | 385 | 1.661178 | GCAAGTTCATGCGTGTCACTG | 60.661 | 52.381 | 5.68 | 6.11 | 36.45 | 3.66 |
362 | 386 | 0.588252 | GCAAGTTCATGCGTGTCACT | 59.412 | 50.000 | 5.68 | 6.75 | 36.45 | 3.41 |
363 | 387 | 3.077339 | GCAAGTTCATGCGTGTCAC | 57.923 | 52.632 | 5.68 | 4.45 | 36.45 | 3.67 |
476 | 507 | 5.107837 | GCCGTATAGATCGTGAAAGTTCATG | 60.108 | 44.000 | 6.88 | 6.88 | 43.79 | 3.07 |
477 | 508 | 4.982916 | GCCGTATAGATCGTGAAAGTTCAT | 59.017 | 41.667 | 0.00 | 0.00 | 39.73 | 2.57 |
478 | 509 | 4.097437 | AGCCGTATAGATCGTGAAAGTTCA | 59.903 | 41.667 | 0.00 | 0.00 | 34.20 | 3.18 |
479 | 510 | 4.608951 | AGCCGTATAGATCGTGAAAGTTC | 58.391 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
514 | 545 | 5.390613 | GTGTGACAAATTACATGTACTGGC | 58.609 | 41.667 | 4.68 | 6.39 | 0.00 | 4.85 |
551 | 582 | 0.458543 | CGGTGGATCGACTTGACCTG | 60.459 | 60.000 | 7.84 | 0.00 | 0.00 | 4.00 |
554 | 585 | 1.153628 | CCCGGTGGATCGACTTGAC | 60.154 | 63.158 | 7.84 | 0.00 | 0.00 | 3.18 |
556 | 587 | 0.179119 | GTACCCGGTGGATCGACTTG | 60.179 | 60.000 | 7.84 | 1.24 | 34.81 | 3.16 |
573 | 604 | 0.523072 | GAAGTACCACACGCGGAGTA | 59.477 | 55.000 | 12.47 | 3.20 | 0.00 | 2.59 |
581 | 612 | 1.003233 | CTTGGAGGGGAAGTACCACAC | 59.997 | 57.143 | 0.00 | 0.00 | 46.31 | 3.82 |
697 | 733 | 1.819905 | CGTTTGGTGGGGTTTGCTT | 59.180 | 52.632 | 0.00 | 0.00 | 0.00 | 3.91 |
775 | 820 | 6.715280 | TCCATCTGCTTTTGAGTTAGATTCT | 58.285 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
776 | 821 | 6.992063 | TCCATCTGCTTTTGAGTTAGATTC | 57.008 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
777 | 822 | 6.183360 | GCATCCATCTGCTTTTGAGTTAGATT | 60.183 | 38.462 | 0.00 | 0.00 | 39.12 | 2.40 |
779 | 824 | 4.637534 | GCATCCATCTGCTTTTGAGTTAGA | 59.362 | 41.667 | 0.00 | 0.00 | 39.12 | 2.10 |
780 | 825 | 4.397103 | TGCATCCATCTGCTTTTGAGTTAG | 59.603 | 41.667 | 0.00 | 0.00 | 42.75 | 2.34 |
781 | 826 | 4.334552 | TGCATCCATCTGCTTTTGAGTTA | 58.665 | 39.130 | 0.00 | 0.00 | 42.75 | 2.24 |
843 | 891 | 5.907197 | ATATATGAGTGCTTGCGTTGTAC | 57.093 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
866 | 915 | 9.998106 | AATTTATAGCGATGAGTGTATACCTTT | 57.002 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
867 | 916 | 9.640963 | GAATTTATAGCGATGAGTGTATACCTT | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
868 | 917 | 8.803235 | TGAATTTATAGCGATGAGTGTATACCT | 58.197 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
875 | 924 | 8.651588 | GGTAAGATGAATTTATAGCGATGAGTG | 58.348 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
887 | 936 | 9.453572 | GATGCTCATATGGGTAAGATGAATTTA | 57.546 | 33.333 | 4.11 | 0.00 | 0.00 | 1.40 |
891 | 940 | 6.296087 | GGAGATGCTCATATGGGTAAGATGAA | 60.296 | 42.308 | 4.11 | 0.00 | 31.08 | 2.57 |
892 | 941 | 5.188555 | GGAGATGCTCATATGGGTAAGATGA | 59.811 | 44.000 | 4.11 | 0.00 | 31.08 | 2.92 |
893 | 942 | 5.046087 | TGGAGATGCTCATATGGGTAAGATG | 60.046 | 44.000 | 4.11 | 0.00 | 31.08 | 2.90 |
895 | 944 | 4.492646 | TGGAGATGCTCATATGGGTAAGA | 58.507 | 43.478 | 4.11 | 0.00 | 31.08 | 2.10 |
897 | 946 | 4.907269 | TCTTGGAGATGCTCATATGGGTAA | 59.093 | 41.667 | 4.11 | 0.00 | 31.08 | 2.85 |
902 | 951 | 5.010820 | TCAGTCTCTTGGAGATGCTCATATG | 59.989 | 44.000 | 0.00 | 0.00 | 40.98 | 1.78 |
903 | 952 | 5.146298 | TCAGTCTCTTGGAGATGCTCATAT | 58.854 | 41.667 | 0.47 | 0.00 | 40.98 | 1.78 |
905 | 954 | 3.372897 | TCAGTCTCTTGGAGATGCTCAT | 58.627 | 45.455 | 0.47 | 0.00 | 40.98 | 2.90 |
906 | 955 | 2.812658 | TCAGTCTCTTGGAGATGCTCA | 58.187 | 47.619 | 0.47 | 0.00 | 40.98 | 4.26 |
907 | 956 | 3.520569 | GTTCAGTCTCTTGGAGATGCTC | 58.479 | 50.000 | 0.47 | 0.00 | 40.98 | 4.26 |
908 | 957 | 2.235898 | GGTTCAGTCTCTTGGAGATGCT | 59.764 | 50.000 | 0.47 | 0.00 | 40.98 | 3.79 |
909 | 958 | 2.027745 | TGGTTCAGTCTCTTGGAGATGC | 60.028 | 50.000 | 0.47 | 0.00 | 40.98 | 3.91 |
910 | 959 | 3.969287 | TGGTTCAGTCTCTTGGAGATG | 57.031 | 47.619 | 0.47 | 1.86 | 40.98 | 2.90 |
941 | 1002 | 6.800408 | CGTCTAGTGACTTCGTAAAATCTCAA | 59.200 | 38.462 | 0.00 | 0.00 | 40.86 | 3.02 |
957 | 1018 | 1.657594 | CGACTACGAAGCGTCTAGTGA | 59.342 | 52.381 | 13.40 | 0.00 | 41.54 | 3.41 |
981 | 1044 | 1.117142 | TTCGGTGGGAGGAGACGTTT | 61.117 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
997 | 1061 | 2.522930 | TTTTCGACGACGCGCATTCG | 62.523 | 55.000 | 22.84 | 22.84 | 42.36 | 3.34 |
998 | 1062 | 0.247145 | ATTTTCGACGACGCGCATTC | 60.247 | 50.000 | 5.73 | 1.33 | 39.58 | 2.67 |
1001 | 1065 | 2.722731 | GGATTTTCGACGACGCGCA | 61.723 | 57.895 | 5.73 | 0.00 | 39.58 | 6.09 |
1006 | 1070 | 4.593597 | TTATTGCAGGATTTTCGACGAC | 57.406 | 40.909 | 0.00 | 0.00 | 0.00 | 4.34 |
1010 | 1074 | 6.135290 | CTGGATTTATTGCAGGATTTTCGA | 57.865 | 37.500 | 0.00 | 0.00 | 39.94 | 3.71 |
1043 | 1108 | 5.965033 | AAAGAGAGGAGCAGATGGAATAA | 57.035 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
1044 | 1109 | 5.965033 | AAAAGAGAGGAGCAGATGGAATA | 57.035 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
1049 | 1114 | 3.688673 | GGACAAAAAGAGAGGAGCAGATG | 59.311 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
1053 | 1118 | 1.270839 | CGGGACAAAAAGAGAGGAGCA | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
1062 | 1127 | 5.240844 | ACTCTTTTACCATCGGGACAAAAAG | 59.759 | 40.000 | 0.00 | 0.00 | 38.05 | 2.27 |
1068 | 1133 | 6.997239 | ATAAAACTCTTTTACCATCGGGAC | 57.003 | 37.500 | 0.00 | 0.00 | 37.88 | 4.46 |
1069 | 1134 | 6.600427 | GGAATAAAACTCTTTTACCATCGGGA | 59.400 | 38.462 | 0.00 | 0.00 | 37.88 | 5.14 |
1070 | 1135 | 6.376018 | TGGAATAAAACTCTTTTACCATCGGG | 59.624 | 38.462 | 0.00 | 0.00 | 37.88 | 5.14 |
1071 | 1136 | 7.385778 | TGGAATAAAACTCTTTTACCATCGG | 57.614 | 36.000 | 0.00 | 0.00 | 37.88 | 4.18 |
1114 | 1179 | 3.120792 | TCGTGCACAAGTTCACTTACTC | 58.879 | 45.455 | 18.64 | 0.00 | 34.28 | 2.59 |
1118 | 1183 | 1.299541 | CCTCGTGCACAAGTTCACTT | 58.700 | 50.000 | 18.64 | 0.00 | 36.45 | 3.16 |
1120 | 1185 | 1.014352 | AACCTCGTGCACAAGTTCAC | 58.986 | 50.000 | 18.64 | 0.00 | 0.00 | 3.18 |
1121 | 1186 | 2.605837 | TAACCTCGTGCACAAGTTCA | 57.394 | 45.000 | 18.64 | 3.80 | 0.00 | 3.18 |
1122 | 1187 | 3.250040 | ACATTAACCTCGTGCACAAGTTC | 59.750 | 43.478 | 18.64 | 0.00 | 0.00 | 3.01 |
1163 | 1417 | 3.693128 | TATTTGCACACGAGCGAGGCT | 62.693 | 52.381 | 0.00 | 0.00 | 43.88 | 4.58 |
1168 | 1422 | 1.071502 | CCGTATATTTGCACACGAGCG | 60.072 | 52.381 | 0.00 | 0.00 | 36.53 | 5.03 |
1172 | 1430 | 1.329292 | CCCACCGTATATTTGCACACG | 59.671 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
1176 | 1434 | 1.440938 | GCGCCCACCGTATATTTGCA | 61.441 | 55.000 | 0.00 | 0.00 | 39.71 | 4.08 |
1248 | 1509 | 0.315568 | GTCACCACTGCTTCGTCTCT | 59.684 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1372 | 1635 | 8.854614 | ATCTGAGTATGATTAATAAACTGGCC | 57.145 | 34.615 | 0.00 | 0.00 | 0.00 | 5.36 |
1472 | 1773 | 2.543031 | GCGCGATCATGGTAGTACAGAA | 60.543 | 50.000 | 12.10 | 0.00 | 0.00 | 3.02 |
1480 | 1781 | 1.106944 | TCTCCTGCGCGATCATGGTA | 61.107 | 55.000 | 12.10 | 0.00 | 0.00 | 3.25 |
1481 | 1782 | 1.960040 | TTCTCCTGCGCGATCATGGT | 61.960 | 55.000 | 12.10 | 0.00 | 0.00 | 3.55 |
1482 | 1783 | 0.602106 | ATTCTCCTGCGCGATCATGG | 60.602 | 55.000 | 12.10 | 3.38 | 0.00 | 3.66 |
1510 | 1811 | 5.540719 | GTCTAAGGGAGTATATTCCAGCAGT | 59.459 | 44.000 | 15.53 | 0.00 | 39.09 | 4.40 |
1524 | 1825 | 3.082548 | TGTCTCTGAACGTCTAAGGGAG | 58.917 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1525 | 1826 | 3.082548 | CTGTCTCTGAACGTCTAAGGGA | 58.917 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1526 | 1827 | 2.820787 | ACTGTCTCTGAACGTCTAAGGG | 59.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1529 | 1830 | 4.386711 | TCTCACTGTCTCTGAACGTCTAA | 58.613 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
1534 | 1835 | 3.733224 | CACTTTCTCACTGTCTCTGAACG | 59.267 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
1538 | 1839 | 3.305950 | CCTCCACTTTCTCACTGTCTCTG | 60.306 | 52.174 | 0.00 | 0.00 | 0.00 | 3.35 |
1544 | 1845 | 7.786030 | TCTAATAATCCTCCACTTTCTCACTG | 58.214 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
1555 | 1856 | 9.828691 | TCTGATGAGTAATCTAATAATCCTCCA | 57.171 | 33.333 | 0.00 | 0.00 | 36.15 | 3.86 |
1578 | 1882 | 2.304180 | TCCTTCCAGCTCTTTTCCTCTG | 59.696 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1614 | 1921 | 7.632515 | CGCTTTCGTCTTATTTGTCATCTTTAG | 59.367 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
1615 | 1922 | 7.412563 | CCGCTTTCGTCTTATTTGTCATCTTTA | 60.413 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
1616 | 1923 | 6.307155 | CGCTTTCGTCTTATTTGTCATCTTT | 58.693 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1623 | 1930 | 2.482721 | CCACCGCTTTCGTCTTATTTGT | 59.517 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
1660 | 1967 | 4.585955 | TCTCTCGCTTACTGTTTCTGTT | 57.414 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
1706 | 2013 | 9.678941 | AAAACTTAGTAAAAGCTAAAGATGCAC | 57.321 | 29.630 | 0.00 | 0.00 | 31.43 | 4.57 |
1780 | 2087 | 0.390209 | GCGGCCGGTGTTAAAGACTA | 60.390 | 55.000 | 29.38 | 0.00 | 0.00 | 2.59 |
1821 | 2129 | 5.272397 | GTGGTTCGTTCGTTTGGATAAAAA | 58.728 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
1845 | 2155 | 3.418047 | ACCATTTGCTACAGGGTGTTAC | 58.582 | 45.455 | 0.00 | 0.00 | 0.00 | 2.50 |
1858 | 2168 | 6.903883 | TTCTACGATAAGAAGACCATTTGC | 57.096 | 37.500 | 0.00 | 0.00 | 31.85 | 3.68 |
1984 | 2323 | 7.634671 | TCTCAAACAATCATCATGCACTAAT | 57.365 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1985 | 2324 | 7.175467 | ACTTCTCAAACAATCATCATGCACTAA | 59.825 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1986 | 2325 | 6.656270 | ACTTCTCAAACAATCATCATGCACTA | 59.344 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1987 | 2326 | 5.475909 | ACTTCTCAAACAATCATCATGCACT | 59.524 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2052 | 2392 | 1.151668 | CTCCTGGTGAGCGTTTTGAG | 58.848 | 55.000 | 0.00 | 0.00 | 33.47 | 3.02 |
3625 | 4044 | 2.791256 | CAACGCTATTGGGCACGG | 59.209 | 61.111 | 0.00 | 0.00 | 0.00 | 4.94 |
3802 | 4228 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3803 | 4229 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3804 | 4230 | 5.136068 | TCTCTCTCTCTCTCTCTCTCTCT | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
3805 | 4231 | 5.047377 | GGATCTCTCTCTCTCTCTCTCTCTC | 60.047 | 52.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3806 | 4232 | 4.837860 | GGATCTCTCTCTCTCTCTCTCTCT | 59.162 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3903 | 4333 | 4.069869 | GGAGCTGAGCTGCAACAA | 57.930 | 55.556 | 21.41 | 0.00 | 46.16 | 2.83 |
4025 | 4455 | 4.101448 | AGCGCCCCAGATCACCAC | 62.101 | 66.667 | 2.29 | 0.00 | 0.00 | 4.16 |
4180 | 4611 | 3.650950 | GGGCTGGGCTTGTCCTCA | 61.651 | 66.667 | 0.00 | 0.00 | 34.39 | 3.86 |
4193 | 4624 | 2.177888 | AGGTGAAAAAGAGGAAAGGGCT | 59.822 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
4255 | 4686 | 3.817647 | ACATGTTTGAGCTCAAGAACTCC | 59.182 | 43.478 | 27.02 | 13.33 | 37.15 | 3.85 |
4300 | 4750 | 2.877168 | CAGAGCAGAGGCATTCAATACC | 59.123 | 50.000 | 0.00 | 0.00 | 44.61 | 2.73 |
4341 | 4791 | 3.562176 | GGAGACACCACCAGATTGGAATT | 60.562 | 47.826 | 1.40 | 0.00 | 41.78 | 2.17 |
4416 | 4866 | 4.228912 | AGCCGATCAAGACAAACTTTTG | 57.771 | 40.909 | 0.00 | 0.00 | 43.62 | 2.44 |
4449 | 4902 | 2.031245 | ACTGTTCGAATTGCGCAATCAA | 60.031 | 40.909 | 33.93 | 23.08 | 40.61 | 2.57 |
4457 | 4910 | 0.165944 | CACGGGACTGTTCGAATTGC | 59.834 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
4458 | 4911 | 1.194547 | CACACGGGACTGTTCGAATTG | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
4556 | 5012 | 6.368516 | TGCCAAGAACAAACAAAAAGAAAGAG | 59.631 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
4840 | 5296 | 3.838271 | CGGAGGCGGCAGCTCTTA | 61.838 | 66.667 | 13.08 | 0.00 | 44.37 | 2.10 |
5071 | 5530 | 2.527497 | TGGAAGAAATCATGCAAGGCA | 58.473 | 42.857 | 0.00 | 0.00 | 44.86 | 4.75 |
5224 | 5685 | 4.682778 | ACAGTAACTAACAGGAAGTGCA | 57.317 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
5227 | 5688 | 7.450903 | AGCAATAACAGTAACTAACAGGAAGT | 58.549 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
5228 | 5689 | 7.819900 | AGAGCAATAACAGTAACTAACAGGAAG | 59.180 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
5238 | 5699 | 6.985188 | TTCATCCAGAGCAATAACAGTAAC | 57.015 | 37.500 | 0.00 | 0.00 | 0.00 | 2.50 |
5290 | 5751 | 7.658261 | AGCCCAAGTTTGATTAGTTTCTAAAC | 58.342 | 34.615 | 0.00 | 0.00 | 39.17 | 2.01 |
5296 | 5757 | 8.018537 | ACTTAAAGCCCAAGTTTGATTAGTTT | 57.981 | 30.769 | 0.00 | 0.00 | 32.28 | 2.66 |
5299 | 5760 | 6.868339 | CCAACTTAAAGCCCAAGTTTGATTAG | 59.132 | 38.462 | 5.45 | 0.00 | 42.18 | 1.73 |
5348 | 5809 | 6.770785 | TGGATCATCTAATTTAAAACGGAGGG | 59.229 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
5349 | 5810 | 7.801716 | TGGATCATCTAATTTAAAACGGAGG | 57.198 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5350 | 5811 | 8.893727 | AGTTGGATCATCTAATTTAAAACGGAG | 58.106 | 33.333 | 0.00 | 0.00 | 0.00 | 4.63 |
5351 | 5812 | 8.801882 | AGTTGGATCATCTAATTTAAAACGGA | 57.198 | 30.769 | 0.00 | 0.00 | 0.00 | 4.69 |
5352 | 5813 | 9.855021 | AAAGTTGGATCATCTAATTTAAAACGG | 57.145 | 29.630 | 0.00 | 0.00 | 0.00 | 4.44 |
5392 | 5853 | 9.983024 | TTCCAAAATAGATGACCCAACTTTATA | 57.017 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
5393 | 5854 | 8.749354 | GTTCCAAAATAGATGACCCAACTTTAT | 58.251 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5394 | 5855 | 7.094549 | CGTTCCAAAATAGATGACCCAACTTTA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
5395 | 5856 | 6.294508 | CGTTCCAAAATAGATGACCCAACTTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
5396 | 5857 | 5.183140 | CGTTCCAAAATAGATGACCCAACTT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5397 | 5858 | 4.700213 | CGTTCCAAAATAGATGACCCAACT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
5398 | 5859 | 4.142469 | CCGTTCCAAAATAGATGACCCAAC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
5399 | 5860 | 4.013728 | CCGTTCCAAAATAGATGACCCAA | 58.986 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
5400 | 5861 | 3.264706 | TCCGTTCCAAAATAGATGACCCA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
5401 | 5862 | 3.877508 | CTCCGTTCCAAAATAGATGACCC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
5402 | 5863 | 3.877508 | CCTCCGTTCCAAAATAGATGACC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
5403 | 5864 | 3.877508 | CCCTCCGTTCCAAAATAGATGAC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
5404 | 5865 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
5405 | 5866 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
5406 | 5867 | 3.780850 | ACTCCCTCCGTTCCAAAATAGAT | 59.219 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
5407 | 5868 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
5408 | 5869 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
5409 | 5870 | 4.098894 | AGTACTCCCTCCGTTCCAAAATA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
5410 | 5871 | 2.910977 | AGTACTCCCTCCGTTCCAAAAT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
5411 | 5872 | 2.332117 | AGTACTCCCTCCGTTCCAAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
5412 | 5873 | 2.019807 | AGTACTCCCTCCGTTCCAAA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
5413 | 5874 | 2.905415 | TAGTACTCCCTCCGTTCCAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
5414 | 5875 | 3.053095 | AGAATAGTACTCCCTCCGTTCCA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
5415 | 5876 | 3.564264 | AGAATAGTACTCCCTCCGTTCC | 58.436 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
5416 | 5877 | 5.945466 | CTAGAATAGTACTCCCTCCGTTC | 57.055 | 47.826 | 0.00 | 0.00 | 32.85 | 3.95 |
5430 | 5891 | 9.522804 | CCAACTAGCTTTCAGTAACTAGAATAG | 57.477 | 37.037 | 0.00 | 0.00 | 46.50 | 1.73 |
5431 | 5892 | 7.980099 | GCCAACTAGCTTTCAGTAACTAGAATA | 59.020 | 37.037 | 0.00 | 0.00 | 36.45 | 1.75 |
5437 | 5898 | 3.328050 | AGGCCAACTAGCTTTCAGTAACT | 59.672 | 43.478 | 5.01 | 0.00 | 0.00 | 2.24 |
5450 | 5911 | 5.451354 | ACCTTTTAAAAGTCAGGCCAACTA | 58.549 | 37.500 | 23.04 | 0.00 | 34.20 | 2.24 |
5452 | 5913 | 4.665833 | ACCTTTTAAAAGTCAGGCCAAC | 57.334 | 40.909 | 23.04 | 2.11 | 34.20 | 3.77 |
5460 | 5921 | 8.325282 | CCGTCAATTTTCAACCTTTTAAAAGTC | 58.675 | 33.333 | 23.04 | 0.00 | 34.20 | 3.01 |
5463 | 5924 | 6.594159 | TGCCGTCAATTTTCAACCTTTTAAAA | 59.406 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
5464 | 5925 | 6.106673 | TGCCGTCAATTTTCAACCTTTTAAA | 58.893 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
5465 | 5926 | 5.661458 | TGCCGTCAATTTTCAACCTTTTAA | 58.339 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
5476 | 5938 | 3.509575 | ACATGGTGTATGCCGTCAATTTT | 59.490 | 39.130 | 0.00 | 0.00 | 40.59 | 1.82 |
5513 | 5975 | 4.863491 | CAGTCAAGGTCAAAAATGGACTG | 58.137 | 43.478 | 0.00 | 0.00 | 43.01 | 3.51 |
5524 | 5986 | 1.581934 | CTTGAACGCAGTCAAGGTCA | 58.418 | 50.000 | 15.47 | 0.00 | 45.00 | 4.02 |
5574 | 6036 | 6.036735 | GCCGCTAACTAATACTCAATTTGTCA | 59.963 | 38.462 | 0.00 | 0.00 | 33.21 | 3.58 |
5575 | 6037 | 6.258068 | AGCCGCTAACTAATACTCAATTTGTC | 59.742 | 38.462 | 0.00 | 0.00 | 33.21 | 3.18 |
5576 | 6038 | 6.113411 | AGCCGCTAACTAATACTCAATTTGT | 58.887 | 36.000 | 0.00 | 0.00 | 35.42 | 2.83 |
5577 | 6039 | 6.604735 | AGCCGCTAACTAATACTCAATTTG | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
5580 | 6042 | 8.148351 | TGAAATAGCCGCTAACTAATACTCAAT | 58.852 | 33.333 | 3.73 | 0.00 | 0.00 | 2.57 |
5582 | 6044 | 7.046292 | TGAAATAGCCGCTAACTAATACTCA | 57.954 | 36.000 | 3.73 | 0.00 | 0.00 | 3.41 |
5583 | 6045 | 7.115095 | CACTGAAATAGCCGCTAACTAATACTC | 59.885 | 40.741 | 3.73 | 0.00 | 0.00 | 2.59 |
5584 | 6046 | 6.924060 | CACTGAAATAGCCGCTAACTAATACT | 59.076 | 38.462 | 3.73 | 0.00 | 0.00 | 2.12 |
5585 | 6047 | 6.700520 | ACACTGAAATAGCCGCTAACTAATAC | 59.299 | 38.462 | 3.73 | 0.00 | 0.00 | 1.89 |
5596 | 6060 | 2.093306 | TGGTCACACTGAAATAGCCG | 57.907 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
5636 | 6100 | 7.284074 | ACTTGATTAGTAGCTGCTCTAGACTA | 58.716 | 38.462 | 7.91 | 5.62 | 34.56 | 2.59 |
5638 | 6102 | 6.385649 | ACTTGATTAGTAGCTGCTCTAGAC | 57.614 | 41.667 | 7.91 | 0.00 | 34.56 | 2.59 |
5644 | 6108 | 6.485830 | TTCCATACTTGATTAGTAGCTGCT | 57.514 | 37.500 | 9.94 | 9.94 | 42.44 | 4.24 |
5645 | 6109 | 9.442047 | AATATTCCATACTTGATTAGTAGCTGC | 57.558 | 33.333 | 0.00 | 0.00 | 42.44 | 5.25 |
5685 | 6150 | 8.993121 | TGCTAAAAGATAGAAAAACTGACTGAG | 58.007 | 33.333 | 0.00 | 0.00 | 0.00 | 3.35 |
5716 | 6183 | 6.743575 | ATGTCCAAATTGTAGCAAGTACTC | 57.256 | 37.500 | 0.00 | 0.00 | 32.19 | 2.59 |
5717 | 6184 | 7.148239 | GCTTATGTCCAAATTGTAGCAAGTACT | 60.148 | 37.037 | 0.00 | 0.00 | 32.19 | 2.73 |
5763 | 6232 | 5.521906 | TTTTCAATGGAATCGGTGTGAAA | 57.478 | 34.783 | 0.00 | 0.00 | 34.20 | 2.69 |
5811 | 6285 | 9.469807 | GAATCATCTACACAGGATAAAGTACTG | 57.530 | 37.037 | 0.00 | 0.00 | 44.97 | 2.74 |
5812 | 6286 | 9.427821 | AGAATCATCTACACAGGATAAAGTACT | 57.572 | 33.333 | 0.00 | 0.00 | 32.88 | 2.73 |
5847 | 6321 | 9.349713 | TCAATAATAACAACAAGAGGTGAACTT | 57.650 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
5848 | 6322 | 8.784043 | GTCAATAATAACAACAAGAGGTGAACT | 58.216 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
5849 | 6323 | 8.784043 | AGTCAATAATAACAACAAGAGGTGAAC | 58.216 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
5863 | 6342 | 7.617041 | AGAGGTGCTCAAAGTCAATAATAAC | 57.383 | 36.000 | 0.00 | 0.00 | 32.06 | 1.89 |
5870 | 6349 | 3.134623 | TGAGAAGAGGTGCTCAAAGTCAA | 59.865 | 43.478 | 0.00 | 0.00 | 38.14 | 3.18 |
6013 | 6492 | 0.329261 | TGAAATCACTGGAGCCCTGG | 59.671 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
6085 | 6567 | 6.549364 | TGAAATTGTCACAGGTAAAATCTGGT | 59.451 | 34.615 | 0.00 | 0.00 | 36.62 | 4.00 |
6252 | 6734 | 4.536090 | TGTCACTCAATCCAGGGAGTAAAT | 59.464 | 41.667 | 0.00 | 0.00 | 42.22 | 1.40 |
6311 | 6793 | 3.935315 | TGAGCTTCTCAGAGTCATTTGG | 58.065 | 45.455 | 0.00 | 0.00 | 35.39 | 3.28 |
6384 | 6866 | 1.481772 | CACCCCCAAATGGTGCAATAG | 59.518 | 52.381 | 0.00 | 0.00 | 46.13 | 1.73 |
6598 | 7080 | 0.246635 | ACTCCGATTTCACTGACGGG | 59.753 | 55.000 | 0.00 | 0.00 | 44.57 | 5.28 |
6687 | 7175 | 1.600916 | ACGGAAAGCTGCTGGTTCC | 60.601 | 57.895 | 18.87 | 18.87 | 32.90 | 3.62 |
6745 | 7233 | 0.537188 | ACTCTGGGCTAATCACCGTG | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
6781 | 7269 | 5.989477 | TCATTCAGACGTTCTTCCCAATAT | 58.011 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
6795 | 7283 | 3.129871 | GGAGCAGCATACTCATTCAGAC | 58.870 | 50.000 | 0.00 | 0.00 | 35.79 | 3.51 |
6805 | 7293 | 1.661341 | CACTGAAGGGAGCAGCATAC | 58.339 | 55.000 | 0.00 | 0.00 | 36.86 | 2.39 |
6808 | 7296 | 0.835971 | TACCACTGAAGGGAGCAGCA | 60.836 | 55.000 | 0.00 | 0.00 | 36.86 | 4.41 |
6809 | 7297 | 0.324943 | TTACCACTGAAGGGAGCAGC | 59.675 | 55.000 | 0.00 | 0.00 | 36.86 | 5.25 |
6810 | 7298 | 3.274288 | GAATTACCACTGAAGGGAGCAG | 58.726 | 50.000 | 0.00 | 0.00 | 39.26 | 4.24 |
7087 | 7582 | 1.766496 | AGTTGTGTTCCCGGAGAAGAA | 59.234 | 47.619 | 0.73 | 0.00 | 34.29 | 2.52 |
7137 | 7632 | 1.675641 | GTCGTTGCCCAGGAGCATT | 60.676 | 57.895 | 3.68 | 0.00 | 43.64 | 3.56 |
7439 | 7937 | 4.757692 | TCCACCAACTTTATTGGGGAAAT | 58.242 | 39.130 | 9.56 | 0.00 | 45.73 | 2.17 |
7497 | 7996 | 4.969484 | TGACAAAAAGGGTCTCTAGTTCC | 58.031 | 43.478 | 0.00 | 0.00 | 36.26 | 3.62 |
7508 | 8007 | 3.321682 | TGCCAAAGAGATGACAAAAAGGG | 59.678 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
7511 | 8010 | 9.558396 | AAATAAATGCCAAAGAGATGACAAAAA | 57.442 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
7516 | 8015 | 7.814107 | TGTTCAAATAAATGCCAAAGAGATGAC | 59.186 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
7518 | 8017 | 8.537049 | TTGTTCAAATAAATGCCAAAGAGATG | 57.463 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
7519 | 8018 | 9.158233 | CATTGTTCAAATAAATGCCAAAGAGAT | 57.842 | 29.630 | 0.00 | 0.00 | 0.00 | 2.75 |
7520 | 8019 | 8.149647 | ACATTGTTCAAATAAATGCCAAAGAGA | 58.850 | 29.630 | 0.00 | 0.00 | 35.20 | 3.10 |
7521 | 8020 | 8.314143 | ACATTGTTCAAATAAATGCCAAAGAG | 57.686 | 30.769 | 0.00 | 0.00 | 35.20 | 2.85 |
7522 | 8021 | 9.770097 | TTACATTGTTCAAATAAATGCCAAAGA | 57.230 | 25.926 | 0.00 | 0.00 | 35.20 | 2.52 |
7525 | 8024 | 9.941325 | ATCTTACATTGTTCAAATAAATGCCAA | 57.059 | 25.926 | 0.00 | 0.00 | 35.20 | 4.52 |
7566 | 8072 | 4.893524 | TCAACAAGAGAGAGTACACCAGAA | 59.106 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
7567 | 8073 | 4.470602 | TCAACAAGAGAGAGTACACCAGA | 58.529 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
7572 | 8078 | 6.706270 | GGAAATGTTCAACAAGAGAGAGTACA | 59.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
7635 | 8141 | 1.021390 | AATACTCCACTGCTGTGCGC | 61.021 | 55.000 | 17.57 | 0.00 | 42.54 | 6.09 |
7677 | 8208 | 7.808381 | CAGCTTGAATGCTTGATGGATAATAAG | 59.192 | 37.037 | 0.00 | 0.00 | 41.98 | 1.73 |
7678 | 8209 | 7.654568 | CAGCTTGAATGCTTGATGGATAATAA | 58.345 | 34.615 | 0.00 | 0.00 | 41.98 | 1.40 |
7685 | 8254 | 1.922570 | GCAGCTTGAATGCTTGATGG | 58.077 | 50.000 | 0.00 | 0.00 | 41.98 | 3.51 |
7716 | 8285 | 6.425114 | CACGGAGCAAGCTACTGAATAATAAT | 59.575 | 38.462 | 2.37 | 0.00 | 0.00 | 1.28 |
7738 | 8475 | 4.727734 | GCAGCCATGTATACAAACTTCACG | 60.728 | 45.833 | 10.14 | 0.00 | 0.00 | 4.35 |
7739 | 8476 | 4.438744 | GGCAGCCATGTATACAAACTTCAC | 60.439 | 45.833 | 10.14 | 0.00 | 0.00 | 3.18 |
7744 | 8481 | 2.285083 | TCGGCAGCCATGTATACAAAC | 58.715 | 47.619 | 13.30 | 2.43 | 0.00 | 2.93 |
7747 | 8484 | 2.103941 | TGAATCGGCAGCCATGTATACA | 59.896 | 45.455 | 13.30 | 8.27 | 0.00 | 2.29 |
7748 | 8485 | 2.766313 | TGAATCGGCAGCCATGTATAC | 58.234 | 47.619 | 13.30 | 0.00 | 0.00 | 1.47 |
7752 | 8490 | 0.322816 | AGTTGAATCGGCAGCCATGT | 60.323 | 50.000 | 13.30 | 0.00 | 0.00 | 3.21 |
7829 | 8568 | 2.440409 | AGTTTTAGCCACCATGCTCTG | 58.560 | 47.619 | 0.00 | 0.00 | 41.68 | 3.35 |
7830 | 8569 | 2.821969 | CAAGTTTTAGCCACCATGCTCT | 59.178 | 45.455 | 0.00 | 0.00 | 41.68 | 4.09 |
7840 | 8579 | 3.056821 | GGGAACATCACCAAGTTTTAGCC | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.93 |
7855 | 8594 | 0.620556 | AATGGCTCGACAGGGAACAT | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
7861 | 8600 | 2.753966 | CGGCAAATGGCTCGACAGG | 61.754 | 63.158 | 5.40 | 0.00 | 44.01 | 4.00 |
7862 | 8601 | 2.787249 | CGGCAAATGGCTCGACAG | 59.213 | 61.111 | 5.40 | 0.00 | 44.01 | 3.51 |
7900 | 8640 | 2.285668 | TCCCCTCTCCCTGCCTTG | 60.286 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
7901 | 8641 | 2.041928 | CTCCCCTCTCCCTGCCTT | 59.958 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
7902 | 8642 | 4.101077 | CCTCCCCTCTCCCTGCCT | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 4.75 |
7912 | 8652 | 4.715130 | TAGTGTGCGCCCTCCCCT | 62.715 | 66.667 | 4.18 | 0.00 | 0.00 | 4.79 |
7913 | 8653 | 2.552231 | AAATAGTGTGCGCCCTCCCC | 62.552 | 60.000 | 4.18 | 0.00 | 0.00 | 4.81 |
7914 | 8654 | 0.179468 | TAAATAGTGTGCGCCCTCCC | 59.821 | 55.000 | 4.18 | 0.00 | 0.00 | 4.30 |
7915 | 8655 | 1.873591 | CATAAATAGTGTGCGCCCTCC | 59.126 | 52.381 | 4.18 | 0.00 | 0.00 | 4.30 |
7916 | 8656 | 2.287915 | CACATAAATAGTGTGCGCCCTC | 59.712 | 50.000 | 4.18 | 0.00 | 40.30 | 4.30 |
8027 | 8767 | 2.270527 | GCAGGGGGCAGAGAGAAC | 59.729 | 66.667 | 0.00 | 0.00 | 43.97 | 3.01 |
8087 | 8827 | 2.963548 | TTAATCGTGGCACCGTATGA | 57.036 | 45.000 | 12.86 | 3.12 | 0.00 | 2.15 |
8119 | 8859 | 0.530650 | AATCTAGGCACATCCGCACG | 60.531 | 55.000 | 0.00 | 0.00 | 40.77 | 5.34 |
8221 | 8965 | 3.058501 | TCGGCCTTGAAGAAATCGTTTTC | 60.059 | 43.478 | 10.36 | 10.36 | 41.34 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.