Multiple sequence alignment - TraesCS3B01G366800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G366800 chr3B 100.000 3628 0 0 1 3628 578986672 578990299 0.000000e+00 6700
1 TraesCS3B01G366800 chr3A 88.647 2669 171 56 254 2831 582344947 582342320 0.000000e+00 3129
2 TraesCS3B01G366800 chr3A 86.592 179 16 3 69 243 582345594 582345420 1.330000e-44 191
3 TraesCS3B01G366800 chr3D 88.443 2639 160 52 258 2831 441572102 441569544 0.000000e+00 3049
4 TraesCS3B01G366800 chr3D 87.619 105 9 4 86 188 441572223 441572121 6.360000e-23 119
5 TraesCS3B01G366800 chr2D 83.713 1228 144 41 1617 2831 600037927 600039111 0.000000e+00 1109
6 TraesCS3B01G366800 chr2D 77.365 592 62 36 792 1334 600036887 600037455 5.930000e-73 285
7 TraesCS3B01G366800 chr2B 85.874 1076 109 31 1617 2672 729957223 729958275 0.000000e+00 1105
8 TraesCS3B01G366800 chr2B 94.607 649 34 1 2980 3628 551485323 551485970 0.000000e+00 1003
9 TraesCS3B01G366800 chr2B 77.885 832 91 49 792 1570 729956285 729957076 7.200000e-117 431
10 TraesCS3B01G366800 chrUn 95.686 649 27 1 2980 3628 3838740 3839387 0.000000e+00 1042
11 TraesCS3B01G366800 chr4B 95.532 649 29 0 2980 3628 234195698 234196346 0.000000e+00 1038
12 TraesCS3B01G366800 chr4B 94.915 649 33 0 2980 3628 517360607 517361255 0.000000e+00 1016
13 TraesCS3B01G366800 chr6B 95.223 649 31 0 2980 3628 19978780 19978132 0.000000e+00 1027
14 TraesCS3B01G366800 chr6B 94.453 649 36 0 2980 3628 40571404 40572052 0.000000e+00 1000
15 TraesCS3B01G366800 chr4A 94.761 649 32 1 2980 3628 714413594 714412948 0.000000e+00 1009
16 TraesCS3B01G366800 chr2A 84.314 1071 127 30 1617 2672 733717035 733718079 0.000000e+00 1009
17 TraesCS3B01G366800 chr2A 76.817 578 76 26 803 1331 733715968 733716536 4.620000e-69 272
18 TraesCS3B01G366800 chr7D 94.607 649 35 0 2980 3628 74078711 74079359 0.000000e+00 1005
19 TraesCS3B01G366800 chr1B 94.607 649 35 0 2980 3628 142282954 142283602 0.000000e+00 1005
20 TraesCS3B01G366800 chr6D 79.070 172 34 2 1013 1183 20589866 20590036 2.290000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G366800 chr3B 578986672 578990299 3627 False 6700.0 6700 100.0000 1 3628 1 chr3B.!!$F1 3627
1 TraesCS3B01G366800 chr3A 582342320 582345594 3274 True 1660.0 3129 87.6195 69 2831 2 chr3A.!!$R1 2762
2 TraesCS3B01G366800 chr3D 441569544 441572223 2679 True 1584.0 3049 88.0310 86 2831 2 chr3D.!!$R1 2745
3 TraesCS3B01G366800 chr2D 600036887 600039111 2224 False 697.0 1109 80.5390 792 2831 2 chr2D.!!$F1 2039
4 TraesCS3B01G366800 chr2B 551485323 551485970 647 False 1003.0 1003 94.6070 2980 3628 1 chr2B.!!$F1 648
5 TraesCS3B01G366800 chr2B 729956285 729958275 1990 False 768.0 1105 81.8795 792 2672 2 chr2B.!!$F2 1880
6 TraesCS3B01G366800 chrUn 3838740 3839387 647 False 1042.0 1042 95.6860 2980 3628 1 chrUn.!!$F1 648
7 TraesCS3B01G366800 chr4B 234195698 234196346 648 False 1038.0 1038 95.5320 2980 3628 1 chr4B.!!$F1 648
8 TraesCS3B01G366800 chr4B 517360607 517361255 648 False 1016.0 1016 94.9150 2980 3628 1 chr4B.!!$F2 648
9 TraesCS3B01G366800 chr6B 19978132 19978780 648 True 1027.0 1027 95.2230 2980 3628 1 chr6B.!!$R1 648
10 TraesCS3B01G366800 chr6B 40571404 40572052 648 False 1000.0 1000 94.4530 2980 3628 1 chr6B.!!$F1 648
11 TraesCS3B01G366800 chr4A 714412948 714413594 646 True 1009.0 1009 94.7610 2980 3628 1 chr4A.!!$R1 648
12 TraesCS3B01G366800 chr2A 733715968 733718079 2111 False 640.5 1009 80.5655 803 2672 2 chr2A.!!$F1 1869
13 TraesCS3B01G366800 chr7D 74078711 74079359 648 False 1005.0 1005 94.6070 2980 3628 1 chr7D.!!$F1 648
14 TraesCS3B01G366800 chr1B 142282954 142283602 648 False 1005.0 1005 94.6070 2980 3628 1 chr1B.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.101579 GAGTAAGACGCAGAGCTCCC 59.898 60.0 10.93 0.43 0.00 4.30 F
38 39 0.257905 TAAGACGCAGAGCTCCCCTA 59.742 55.0 10.93 0.00 0.00 3.53 F
39 40 0.397816 AAGACGCAGAGCTCCCCTAT 60.398 55.0 10.93 0.00 0.00 2.57 F
653 1136 0.536460 GTCACCGTGTTGGACCCAAT 60.536 55.0 4.63 0.00 42.00 3.16 F
785 1286 0.737715 GAGAAATGCAGGTCTCGCGT 60.738 55.0 5.77 0.00 31.55 6.01 F
2094 2985 0.036164 TGTCAATGGTGAACTCCCGG 59.964 55.0 0.00 0.00 34.87 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 2297 0.612732 TCGTACAGTGGTAGGGTGGG 60.613 60.000 0.00 0.0 36.33 4.61 R
1891 2755 1.079819 GTACTCCTTGAGCAGCGCA 60.080 57.895 11.47 0.0 32.04 6.09 R
2058 2925 8.105829 ACCATTGACAAGACAGAGAATTAAGAT 58.894 33.333 0.00 0.0 0.00 2.40 R
2095 2986 0.323633 CCCATGCACCAGTCCATCAA 60.324 55.000 0.00 0.0 0.00 2.57 R
2096 2987 1.303948 CCCATGCACCAGTCCATCA 59.696 57.895 0.00 0.0 0.00 3.07 R
2965 3899 0.108756 GCACTAGGGTGAAGACGTCC 60.109 60.000 13.01 0.0 45.61 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.380743 AGTAGTCCATATGTAAGAGTAAGACG 57.619 38.462 1.24 0.00 0.00 4.18
26 27 6.074544 AGTCCATATGTAAGAGTAAGACGC 57.925 41.667 1.24 0.00 0.00 5.19
27 28 5.593095 AGTCCATATGTAAGAGTAAGACGCA 59.407 40.000 1.24 0.00 0.00 5.24
28 29 5.915758 GTCCATATGTAAGAGTAAGACGCAG 59.084 44.000 1.24 0.00 0.00 5.18
29 30 5.826208 TCCATATGTAAGAGTAAGACGCAGA 59.174 40.000 1.24 0.00 0.00 4.26
30 31 6.017026 TCCATATGTAAGAGTAAGACGCAGAG 60.017 42.308 1.24 0.00 0.00 3.35
31 32 3.489180 TGTAAGAGTAAGACGCAGAGC 57.511 47.619 0.00 0.00 0.00 4.09
32 33 3.082548 TGTAAGAGTAAGACGCAGAGCT 58.917 45.455 0.00 0.00 0.00 4.09
33 34 2.931512 AAGAGTAAGACGCAGAGCTC 57.068 50.000 5.27 5.27 0.00 4.09
34 35 1.099689 AGAGTAAGACGCAGAGCTCC 58.900 55.000 10.93 0.00 0.00 4.70
35 36 0.101579 GAGTAAGACGCAGAGCTCCC 59.898 60.000 10.93 0.43 0.00 4.30
36 37 1.142097 GTAAGACGCAGAGCTCCCC 59.858 63.158 10.93 0.02 0.00 4.81
37 38 1.000486 TAAGACGCAGAGCTCCCCT 60.000 57.895 10.93 0.00 0.00 4.79
38 39 0.257905 TAAGACGCAGAGCTCCCCTA 59.742 55.000 10.93 0.00 0.00 3.53
39 40 0.397816 AAGACGCAGAGCTCCCCTAT 60.398 55.000 10.93 0.00 0.00 2.57
40 41 0.825840 AGACGCAGAGCTCCCCTATC 60.826 60.000 10.93 2.25 0.00 2.08
41 42 1.075970 ACGCAGAGCTCCCCTATCA 60.076 57.895 10.93 0.00 0.00 2.15
42 43 0.687757 ACGCAGAGCTCCCCTATCAA 60.688 55.000 10.93 0.00 0.00 2.57
43 44 0.683973 CGCAGAGCTCCCCTATCAAT 59.316 55.000 10.93 0.00 0.00 2.57
44 45 1.895798 CGCAGAGCTCCCCTATCAATA 59.104 52.381 10.93 0.00 0.00 1.90
45 46 2.094286 CGCAGAGCTCCCCTATCAATAG 60.094 54.545 10.93 0.00 0.00 1.73
46 47 3.169099 GCAGAGCTCCCCTATCAATAGA 58.831 50.000 10.93 0.00 32.05 1.98
47 48 3.580458 GCAGAGCTCCCCTATCAATAGAA 59.420 47.826 10.93 0.00 32.05 2.10
48 49 4.040952 GCAGAGCTCCCCTATCAATAGAAA 59.959 45.833 10.93 0.00 32.05 2.52
49 50 5.792741 CAGAGCTCCCCTATCAATAGAAAG 58.207 45.833 10.93 0.00 32.05 2.62
50 51 5.306678 CAGAGCTCCCCTATCAATAGAAAGT 59.693 44.000 10.93 0.00 32.05 2.66
51 52 5.306678 AGAGCTCCCCTATCAATAGAAAGTG 59.693 44.000 10.93 0.00 32.05 3.16
52 53 5.219739 AGCTCCCCTATCAATAGAAAGTGA 58.780 41.667 0.00 0.00 33.60 3.41
53 54 5.306678 AGCTCCCCTATCAATAGAAAGTGAG 59.693 44.000 0.00 0.00 32.39 3.51
54 55 5.512232 GCTCCCCTATCAATAGAAAGTGAGG 60.512 48.000 0.00 0.00 32.39 3.86
55 56 5.538877 TCCCCTATCAATAGAAAGTGAGGT 58.461 41.667 0.00 0.00 32.39 3.85
56 57 5.970640 TCCCCTATCAATAGAAAGTGAGGTT 59.029 40.000 0.00 0.00 32.39 3.50
57 58 6.058183 CCCCTATCAATAGAAAGTGAGGTTG 58.942 44.000 0.00 0.00 32.39 3.77
58 59 6.058183 CCCTATCAATAGAAAGTGAGGTTGG 58.942 44.000 0.00 0.00 32.39 3.77
59 60 5.529060 CCTATCAATAGAAAGTGAGGTTGGC 59.471 44.000 0.00 0.00 32.39 4.52
60 61 4.640771 TCAATAGAAAGTGAGGTTGGCT 57.359 40.909 0.00 0.00 0.00 4.75
61 62 5.755409 TCAATAGAAAGTGAGGTTGGCTA 57.245 39.130 0.00 0.00 0.00 3.93
62 63 5.488341 TCAATAGAAAGTGAGGTTGGCTAC 58.512 41.667 0.00 0.00 0.00 3.58
63 64 2.457366 AGAAAGTGAGGTTGGCTACG 57.543 50.000 0.00 0.00 0.00 3.51
64 65 1.002087 AGAAAGTGAGGTTGGCTACGG 59.998 52.381 0.00 0.00 0.00 4.02
65 66 0.763035 AAAGTGAGGTTGGCTACGGT 59.237 50.000 0.00 0.00 0.00 4.83
66 67 1.636148 AAGTGAGGTTGGCTACGGTA 58.364 50.000 0.00 0.00 0.00 4.02
67 68 0.893447 AGTGAGGTTGGCTACGGTAC 59.107 55.000 0.00 0.00 0.00 3.34
180 184 4.017877 GCTGCGTCACCACACTGC 62.018 66.667 0.00 0.00 0.00 4.40
193 197 2.292267 CACACTGCCCAATGATAGACC 58.708 52.381 0.00 0.00 0.00 3.85
207 211 5.984695 TGATAGACCAATTATCTCCCTCG 57.015 43.478 0.00 0.00 0.00 4.63
212 216 2.158755 ACCAATTATCTCCCTCGCTTGG 60.159 50.000 0.00 0.00 38.08 3.61
213 217 2.104792 CCAATTATCTCCCTCGCTTGGA 59.895 50.000 0.00 0.00 34.88 3.53
214 218 3.433598 CCAATTATCTCCCTCGCTTGGAA 60.434 47.826 0.00 0.00 34.88 3.53
217 221 1.573108 ATCTCCCTCGCTTGGAAGAA 58.427 50.000 0.00 0.00 0.00 2.52
225 229 2.175236 GCTTGGAAGAAGAAGCGGG 58.825 57.895 0.00 0.00 35.59 6.13
228 232 0.762418 TTGGAAGAAGAAGCGGGTGA 59.238 50.000 0.00 0.00 0.00 4.02
243 247 2.814469 CGGGTGATGCTCCTAGCTACTA 60.814 54.545 0.03 0.00 42.97 1.82
244 248 2.823154 GGGTGATGCTCCTAGCTACTAG 59.177 54.545 0.03 0.00 42.97 2.57
245 249 3.492337 GGTGATGCTCCTAGCTACTAGT 58.508 50.000 0.00 0.00 42.97 2.57
246 250 4.506979 GGGTGATGCTCCTAGCTACTAGTA 60.507 50.000 1.89 1.89 42.97 1.82
248 252 4.152759 GTGATGCTCCTAGCTACTAGTACG 59.847 50.000 0.00 0.00 42.97 3.67
249 253 3.834489 TGCTCCTAGCTACTAGTACGT 57.166 47.619 0.00 0.00 42.97 3.57
250 254 4.944619 TGCTCCTAGCTACTAGTACGTA 57.055 45.455 0.00 0.00 42.97 3.57
252 256 4.343526 TGCTCCTAGCTACTAGTACGTACT 59.656 45.833 29.62 29.62 42.97 2.73
425 891 2.016165 GCCGCCTTTGTTTTCTGCG 61.016 57.895 0.00 0.00 44.47 5.18
449 915 0.741221 CGGCTAAGCTGAAGACCCAC 60.741 60.000 0.56 0.00 37.02 4.61
451 917 1.443802 GCTAAGCTGAAGACCCACAC 58.556 55.000 0.56 0.00 0.00 3.82
457 923 2.375174 AGCTGAAGACCCACACCAAATA 59.625 45.455 0.00 0.00 0.00 1.40
473 945 8.338259 CACACCAAATATCATTAGCAAGTACTC 58.662 37.037 0.00 0.00 0.00 2.59
580 1063 2.338500 GGTCCGATTCACACTTGAGTC 58.662 52.381 0.00 0.00 35.60 3.36
589 1072 1.605232 CACACTTGAGTCTGCATGCAA 59.395 47.619 22.88 10.06 0.00 4.08
646 1129 4.619227 AGGGCGTCACCGTGTTGG 62.619 66.667 0.00 0.00 46.41 3.77
652 1135 1.153127 GTCACCGTGTTGGACCCAA 60.153 57.895 0.00 0.00 42.00 4.12
653 1136 0.536460 GTCACCGTGTTGGACCCAAT 60.536 55.000 4.63 0.00 42.00 3.16
667 1168 3.421844 GACCCAATCCAGTAAACAAGCT 58.578 45.455 0.00 0.00 0.00 3.74
690 1191 2.427453 ACTGGTGCTAATCAGTACTCCG 59.573 50.000 0.00 0.00 41.81 4.63
714 1215 6.478673 CGGTCTAGCATTATACATTGACACAA 59.521 38.462 0.00 0.00 0.00 3.33
732 1233 6.542005 TGACACAAGAGCACTCTTTCAAAATA 59.458 34.615 10.19 0.00 46.95 1.40
733 1234 6.729187 ACACAAGAGCACTCTTTCAAAATAC 58.271 36.000 10.19 0.00 46.95 1.89
734 1235 6.318648 ACACAAGAGCACTCTTTCAAAATACA 59.681 34.615 10.19 0.00 46.95 2.29
735 1236 7.148086 ACACAAGAGCACTCTTTCAAAATACAA 60.148 33.333 10.19 0.00 46.95 2.41
736 1237 7.701924 CACAAGAGCACTCTTTCAAAATACAAA 59.298 33.333 10.19 0.00 46.95 2.83
737 1238 8.416329 ACAAGAGCACTCTTTCAAAATACAAAT 58.584 29.630 10.19 0.00 46.95 2.32
738 1239 9.897744 CAAGAGCACTCTTTCAAAATACAAATA 57.102 29.630 10.19 0.00 46.95 1.40
739 1240 9.899226 AAGAGCACTCTTTCAAAATACAAATAC 57.101 29.630 7.10 0.00 46.95 1.89
750 1251 8.425577 TCAAAATACAAATACTAGCTGAGAGC 57.574 34.615 0.00 0.00 42.84 4.09
781 1282 2.094494 TGACTCGAGAAATGCAGGTCTC 60.094 50.000 21.68 16.09 37.51 3.36
784 1285 2.002127 GAGAAATGCAGGTCTCGCG 58.998 57.895 12.29 0.00 31.55 5.87
785 1286 0.737715 GAGAAATGCAGGTCTCGCGT 60.738 55.000 5.77 0.00 31.55 6.01
789 1290 1.320344 AATGCAGGTCTCGCGTCCTA 61.320 55.000 16.49 6.39 32.26 2.94
799 1300 1.009900 CGCGTCCTACTTCCTAGCG 60.010 63.158 0.00 0.00 40.14 4.26
800 1301 1.712977 CGCGTCCTACTTCCTAGCGT 61.713 60.000 0.00 0.00 41.04 5.07
801 1302 1.303309 GCGTCCTACTTCCTAGCGTA 58.697 55.000 0.00 0.00 0.00 4.42
843 1349 4.045104 CAGGTTTAGATGCTGCTACGTAG 58.955 47.826 18.47 18.47 0.00 3.51
865 1375 1.001293 CCAGCTCAGTGTTGTAGCTCA 59.999 52.381 1.23 0.00 44.58 4.26
935 1459 2.132740 GCAGAAGACAGAGGCGATAG 57.867 55.000 0.00 0.00 0.00 2.08
937 1461 2.159170 GCAGAAGACAGAGGCGATAGTT 60.159 50.000 0.00 0.00 39.35 2.24
971 1499 2.740981 CTGACCACACTTTGATCTCTGC 59.259 50.000 0.00 0.00 0.00 4.26
997 1546 3.292500 CTGACAGAGCTCGCTGCCA 62.293 63.158 8.37 0.00 44.23 4.92
998 1547 2.047844 GACAGAGCTCGCTGCCAA 60.048 61.111 8.37 0.00 44.23 4.52
1210 1773 4.725790 AAAACTTGTTCTGCTTGAGCTT 57.274 36.364 4.44 0.00 42.66 3.74
1211 1774 5.835113 AAAACTTGTTCTGCTTGAGCTTA 57.165 34.783 4.44 0.00 42.66 3.09
1212 1775 5.429957 AAACTTGTTCTGCTTGAGCTTAG 57.570 39.130 4.44 0.00 42.66 2.18
1246 1812 6.841443 AGCAAGAGAATCATGTAAGAATCG 57.159 37.500 0.00 0.00 35.96 3.34
1248 1814 5.559799 GCAAGAGAATCATGTAAGAATCGGC 60.560 44.000 0.00 0.00 35.96 5.54
1334 1921 6.655930 TCTTTGCCTTAATCGGGTAAGTAAT 58.344 36.000 5.63 0.00 30.75 1.89
1424 2144 2.158900 ACCGGTGATGAATGACTGATCC 60.159 50.000 6.12 0.00 0.00 3.36
1430 2150 5.220989 GGTGATGAATGACTGATCCATGTTG 60.221 44.000 0.00 0.00 0.00 3.33
1439 2159 6.057533 TGACTGATCCATGTTGATATGGTTC 58.942 40.000 6.65 8.28 46.23 3.62
1449 2169 9.183439 CCATGTTGATATGGTTCTGTTTGCAGA 62.183 40.741 0.00 0.00 43.92 4.26
1561 2281 2.234908 ACCTTCTTCATAGCGCTTCTGT 59.765 45.455 18.68 0.00 0.00 3.41
1575 2295 3.791887 CGCTTCTGTTGAGGTACTAATCG 59.208 47.826 0.00 0.00 41.55 3.34
1577 2297 4.799428 GCTTCTGTTGAGGTACTAATCGAC 59.201 45.833 0.00 0.20 41.55 4.20
1752 2616 2.053865 CCTTCTACGTGGGGCCGTA 61.054 63.158 0.00 0.00 42.00 4.02
1891 2755 2.685017 TGGATCGTCCTGCAGGCT 60.685 61.111 28.91 12.12 37.46 4.58
1933 2797 4.299547 AAGCTGCTCGTCACGGCA 62.300 61.111 12.00 12.00 42.07 5.69
2087 2978 4.687901 TCTCTGTCTTGTCAATGGTGAA 57.312 40.909 0.00 0.00 34.87 3.18
2088 2979 4.380531 TCTCTGTCTTGTCAATGGTGAAC 58.619 43.478 0.00 0.00 34.87 3.18
2089 2980 4.101585 TCTCTGTCTTGTCAATGGTGAACT 59.898 41.667 0.00 0.00 34.87 3.01
2090 2981 4.380531 TCTGTCTTGTCAATGGTGAACTC 58.619 43.478 0.00 0.00 34.87 3.01
2091 2982 3.476552 TGTCTTGTCAATGGTGAACTCC 58.523 45.455 0.00 0.00 34.87 3.85
2092 2983 2.814336 GTCTTGTCAATGGTGAACTCCC 59.186 50.000 0.00 0.00 34.87 4.30
2093 2984 1.806542 CTTGTCAATGGTGAACTCCCG 59.193 52.381 0.00 0.00 34.87 5.14
2094 2985 0.036164 TGTCAATGGTGAACTCCCGG 59.964 55.000 0.00 0.00 34.87 5.73
2095 2986 0.036306 GTCAATGGTGAACTCCCGGT 59.964 55.000 0.00 0.00 34.87 5.28
2096 2987 0.768622 TCAATGGTGAACTCCCGGTT 59.231 50.000 0.00 0.00 41.40 4.44
2097 2988 0.881118 CAATGGTGAACTCCCGGTTG 59.119 55.000 0.00 0.00 38.41 3.77
2098 2989 0.768622 AATGGTGAACTCCCGGTTGA 59.231 50.000 0.00 0.00 38.41 3.18
2103 2994 0.323629 TGAACTCCCGGTTGATGGAC 59.676 55.000 0.00 0.00 38.41 4.02
2240 3134 3.626924 GTGTGGACCCCGCTCTGT 61.627 66.667 0.00 0.00 34.70 3.41
2315 3209 2.738643 CGGCAGGTACGATCAACTTCAT 60.739 50.000 0.00 0.00 0.00 2.57
2316 3210 3.270877 GGCAGGTACGATCAACTTCATT 58.729 45.455 0.00 0.00 0.00 2.57
2317 3211 3.309954 GGCAGGTACGATCAACTTCATTC 59.690 47.826 0.00 0.00 0.00 2.67
2319 3213 4.759782 CAGGTACGATCAACTTCATTCCT 58.240 43.478 0.00 0.00 0.00 3.36
2320 3214 5.178797 CAGGTACGATCAACTTCATTCCTT 58.821 41.667 0.00 0.00 0.00 3.36
2323 3217 5.875359 GGTACGATCAACTTCATTCCTTCTT 59.125 40.000 0.00 0.00 0.00 2.52
2336 3230 5.474876 TCATTCCTTCTTCTTTCAAGCTTCC 59.525 40.000 0.00 0.00 0.00 3.46
2509 3411 1.618861 GGCGAGACGAATATGATCCG 58.381 55.000 0.00 0.00 0.00 4.18
2557 3462 4.952957 AGATGATGAGGAGAAGAACGAGAA 59.047 41.667 0.00 0.00 0.00 2.87
2642 3547 8.553459 AACAAGTCTGATTTGATCGAGTAAAT 57.447 30.769 18.21 8.81 0.00 1.40
2690 3607 4.437794 GCATCGAGCAAATGTGAATTCTGA 60.438 41.667 7.05 0.00 44.79 3.27
2692 3609 5.885230 TCGAGCAAATGTGAATTCTGATT 57.115 34.783 7.05 2.15 0.00 2.57
2694 3611 7.008440 TCGAGCAAATGTGAATTCTGATTAG 57.992 36.000 7.05 0.00 0.00 1.73
2695 3612 6.818142 TCGAGCAAATGTGAATTCTGATTAGA 59.182 34.615 7.05 0.00 0.00 2.10
2699 3616 8.195436 AGCAAATGTGAATTCTGATTAGATTGG 58.805 33.333 7.05 0.00 31.81 3.16
2700 3617 7.437267 GCAAATGTGAATTCTGATTAGATTGGG 59.563 37.037 7.05 0.00 31.81 4.12
2701 3618 7.592885 AATGTGAATTCTGATTAGATTGGGG 57.407 36.000 7.05 0.00 31.81 4.96
2702 3619 6.325993 TGTGAATTCTGATTAGATTGGGGA 57.674 37.500 7.05 0.00 31.81 4.81
2710 3641 8.434589 TTCTGATTAGATTGGGGAACAAAAAT 57.565 30.769 0.00 0.00 43.46 1.82
2717 3648 1.150135 TGGGGAACAAAAATGGCCCTA 59.850 47.619 0.00 0.00 38.84 3.53
2729 3660 7.992608 ACAAAAATGGCCCTAATTGGATTTATC 59.007 33.333 0.00 0.00 38.35 1.75
2799 3733 7.946219 TCCTGATCACCTCAAATTGCATATTAT 59.054 33.333 0.00 0.00 32.14 1.28
2800 3734 8.027189 CCTGATCACCTCAAATTGCATATTATG 58.973 37.037 0.00 0.00 32.14 1.90
2801 3735 8.467963 TGATCACCTCAAATTGCATATTATGT 57.532 30.769 5.60 0.00 0.00 2.29
2805 3739 9.407380 TCACCTCAAATTGCATATTATGTTACT 57.593 29.630 5.60 0.00 0.00 2.24
2815 3749 9.839817 TTGCATATTATGTTACTAAGCCTTACA 57.160 29.630 5.60 0.00 0.00 2.41
2816 3750 9.839817 TGCATATTATGTTACTAAGCCTTACAA 57.160 29.630 5.60 0.00 0.00 2.41
2820 3754 8.746052 ATTATGTTACTAAGCCTTACAATGCA 57.254 30.769 0.00 0.00 0.00 3.96
2821 3755 8.568676 TTATGTTACTAAGCCTTACAATGCAA 57.431 30.769 0.00 0.00 0.00 4.08
2822 3756 6.885952 TGTTACTAAGCCTTACAATGCAAA 57.114 33.333 0.00 0.00 0.00 3.68
2823 3757 6.908825 TGTTACTAAGCCTTACAATGCAAAG 58.091 36.000 0.00 0.00 0.00 2.77
2824 3758 6.488683 TGTTACTAAGCCTTACAATGCAAAGT 59.511 34.615 0.00 0.00 0.00 2.66
2825 3759 7.013846 TGTTACTAAGCCTTACAATGCAAAGTT 59.986 33.333 0.00 0.00 0.00 2.66
2826 3760 6.405278 ACTAAGCCTTACAATGCAAAGTTT 57.595 33.333 0.00 0.00 0.00 2.66
2827 3761 6.215845 ACTAAGCCTTACAATGCAAAGTTTG 58.784 36.000 11.41 11.41 0.00 2.93
2828 3762 4.935352 AGCCTTACAATGCAAAGTTTGA 57.065 36.364 19.82 5.11 0.00 2.69
2829 3763 5.275067 AGCCTTACAATGCAAAGTTTGAA 57.725 34.783 19.82 9.56 0.00 2.69
2830 3764 5.291971 AGCCTTACAATGCAAAGTTTGAAG 58.708 37.500 19.82 11.70 0.00 3.02
2831 3765 4.084380 GCCTTACAATGCAAAGTTTGAAGC 60.084 41.667 19.82 4.63 0.00 3.86
2832 3766 4.448732 CCTTACAATGCAAAGTTTGAAGCC 59.551 41.667 19.82 2.02 0.00 4.35
2833 3767 3.825143 ACAATGCAAAGTTTGAAGCCT 57.175 38.095 19.82 0.00 0.00 4.58
2834 3768 4.141233 ACAATGCAAAGTTTGAAGCCTT 57.859 36.364 19.82 0.00 0.00 4.35
2835 3769 4.122046 ACAATGCAAAGTTTGAAGCCTTC 58.878 39.130 19.82 0.00 0.00 3.46
2836 3770 2.888834 TGCAAAGTTTGAAGCCTTCC 57.111 45.000 19.82 0.00 0.00 3.46
2837 3771 2.387757 TGCAAAGTTTGAAGCCTTCCT 58.612 42.857 19.82 0.00 0.00 3.36
2838 3772 2.362077 TGCAAAGTTTGAAGCCTTCCTC 59.638 45.455 19.82 0.00 0.00 3.71
2839 3773 2.288457 GCAAAGTTTGAAGCCTTCCTCC 60.288 50.000 19.82 0.00 0.00 4.30
2840 3774 1.897560 AAGTTTGAAGCCTTCCTCCG 58.102 50.000 1.21 0.00 0.00 4.63
2841 3775 0.765510 AGTTTGAAGCCTTCCTCCGT 59.234 50.000 1.21 0.00 0.00 4.69
2842 3776 1.143073 AGTTTGAAGCCTTCCTCCGTT 59.857 47.619 1.21 0.00 0.00 4.44
2843 3777 1.954382 GTTTGAAGCCTTCCTCCGTTT 59.046 47.619 1.21 0.00 0.00 3.60
2844 3778 1.892209 TTGAAGCCTTCCTCCGTTTC 58.108 50.000 1.21 0.00 0.00 2.78
2845 3779 0.320421 TGAAGCCTTCCTCCGTTTCG 60.320 55.000 1.21 0.00 0.00 3.46
2846 3780 0.037605 GAAGCCTTCCTCCGTTTCGA 60.038 55.000 0.00 0.00 0.00 3.71
2847 3781 0.395312 AAGCCTTCCTCCGTTTCGAA 59.605 50.000 0.00 0.00 0.00 3.71
2848 3782 0.395312 AGCCTTCCTCCGTTTCGAAA 59.605 50.000 6.47 6.47 0.00 3.46
2849 3783 1.202722 AGCCTTCCTCCGTTTCGAAAA 60.203 47.619 13.10 0.00 0.00 2.29
2850 3784 1.605232 GCCTTCCTCCGTTTCGAAAAA 59.395 47.619 13.10 1.11 0.00 1.94
2885 3819 5.412904 AGCCTTACACTGTAATCTTTGAAGC 59.587 40.000 2.02 0.00 0.00 3.86
2886 3820 5.412904 GCCTTACACTGTAATCTTTGAAGCT 59.587 40.000 2.02 0.00 0.00 3.74
2887 3821 6.621596 GCCTTACACTGTAATCTTTGAAGCTG 60.622 42.308 2.02 0.00 0.00 4.24
2888 3822 4.756084 ACACTGTAATCTTTGAAGCTGC 57.244 40.909 0.00 0.00 0.00 5.25
2889 3823 3.187227 ACACTGTAATCTTTGAAGCTGCG 59.813 43.478 0.00 0.00 0.00 5.18
2890 3824 2.160417 ACTGTAATCTTTGAAGCTGCGC 59.840 45.455 0.00 0.00 0.00 6.09
2891 3825 2.417933 CTGTAATCTTTGAAGCTGCGCT 59.582 45.455 9.73 0.00 42.56 5.92
2892 3826 3.595173 TGTAATCTTTGAAGCTGCGCTA 58.405 40.909 9.73 0.00 38.25 4.26
2893 3827 3.370978 TGTAATCTTTGAAGCTGCGCTAC 59.629 43.478 9.73 0.00 38.25 3.58
2894 3828 2.393271 ATCTTTGAAGCTGCGCTACT 57.607 45.000 9.73 2.28 38.25 2.57
2895 3829 2.169832 TCTTTGAAGCTGCGCTACTT 57.830 45.000 9.73 12.37 38.25 2.24
2896 3830 1.800586 TCTTTGAAGCTGCGCTACTTG 59.199 47.619 18.16 6.09 38.25 3.16
2897 3831 1.532868 CTTTGAAGCTGCGCTACTTGT 59.467 47.619 18.16 0.00 38.25 3.16
2898 3832 2.448926 TTGAAGCTGCGCTACTTGTA 57.551 45.000 18.16 6.38 38.25 2.41
2899 3833 1.996292 TGAAGCTGCGCTACTTGTAG 58.004 50.000 18.16 2.33 38.25 2.74
2900 3834 1.272490 TGAAGCTGCGCTACTTGTAGT 59.728 47.619 18.16 0.00 38.25 2.73
2901 3835 2.288825 TGAAGCTGCGCTACTTGTAGTT 60.289 45.455 18.16 0.00 38.25 2.24
2902 3836 1.997669 AGCTGCGCTACTTGTAGTTC 58.002 50.000 9.73 3.09 36.99 3.01
2903 3837 1.546476 AGCTGCGCTACTTGTAGTTCT 59.454 47.619 9.73 0.00 36.99 3.01
2904 3838 2.753452 AGCTGCGCTACTTGTAGTTCTA 59.247 45.455 9.73 0.00 36.99 2.10
2905 3839 2.853003 GCTGCGCTACTTGTAGTTCTAC 59.147 50.000 9.73 3.33 0.00 2.59
2906 3840 3.427773 GCTGCGCTACTTGTAGTTCTACT 60.428 47.826 9.73 0.00 0.00 2.57
2907 3841 4.734917 CTGCGCTACTTGTAGTTCTACTT 58.265 43.478 9.73 0.00 0.00 2.24
2908 3842 5.130292 TGCGCTACTTGTAGTTCTACTTT 57.870 39.130 9.73 0.00 0.00 2.66
2909 3843 5.535333 TGCGCTACTTGTAGTTCTACTTTT 58.465 37.500 9.73 0.00 0.00 2.27
2910 3844 6.680810 TGCGCTACTTGTAGTTCTACTTTTA 58.319 36.000 9.73 0.40 0.00 1.52
2911 3845 7.147312 TGCGCTACTTGTAGTTCTACTTTTAA 58.853 34.615 9.73 0.00 0.00 1.52
2912 3846 7.652909 TGCGCTACTTGTAGTTCTACTTTTAAA 59.347 33.333 9.73 0.00 0.00 1.52
2913 3847 8.490355 GCGCTACTTGTAGTTCTACTTTTAAAA 58.510 33.333 0.00 0.00 0.00 1.52
2917 3851 8.687292 ACTTGTAGTTCTACTTTTAAAAGGGG 57.313 34.615 27.23 19.56 40.31 4.79
2918 3852 8.496916 ACTTGTAGTTCTACTTTTAAAAGGGGA 58.503 33.333 27.23 21.12 40.31 4.81
2919 3853 8.913487 TTGTAGTTCTACTTTTAAAAGGGGAG 57.087 34.615 27.23 20.72 40.31 4.30
2920 3854 8.037723 TGTAGTTCTACTTTTAAAAGGGGAGT 57.962 34.615 27.23 19.25 40.31 3.85
2921 3855 8.152898 TGTAGTTCTACTTTTAAAAGGGGAGTC 58.847 37.037 27.23 19.11 40.31 3.36
2922 3856 6.540995 AGTTCTACTTTTAAAAGGGGAGTCC 58.459 40.000 27.23 16.03 40.31 3.85
2923 3857 6.102174 AGTTCTACTTTTAAAAGGGGAGTCCA 59.898 38.462 27.23 10.25 40.31 4.02
2924 3858 6.713731 TCTACTTTTAAAAGGGGAGTCCAT 57.286 37.500 27.23 9.36 40.31 3.41
2925 3859 7.817910 TCTACTTTTAAAAGGGGAGTCCATA 57.182 36.000 27.23 9.92 40.31 2.74
2926 3860 7.627311 TCTACTTTTAAAAGGGGAGTCCATAC 58.373 38.462 27.23 0.16 40.31 2.39
2927 3861 5.250982 ACTTTTAAAAGGGGAGTCCATACG 58.749 41.667 27.23 3.28 40.31 3.06
2928 3862 4.914177 TTTAAAAGGGGAGTCCATACGT 57.086 40.909 12.30 0.00 38.24 3.57
2929 3863 4.476628 TTAAAAGGGGAGTCCATACGTC 57.523 45.455 12.30 0.00 38.24 4.34
2930 3864 1.946984 AAAGGGGAGTCCATACGTCA 58.053 50.000 12.30 0.00 38.24 4.35
2931 3865 2.176247 AAGGGGAGTCCATACGTCAT 57.824 50.000 12.30 0.00 38.24 3.06
2932 3866 2.176247 AGGGGAGTCCATACGTCATT 57.824 50.000 12.30 0.00 38.24 2.57
2933 3867 2.478292 AGGGGAGTCCATACGTCATTT 58.522 47.619 12.30 0.00 38.24 2.32
2934 3868 2.844348 AGGGGAGTCCATACGTCATTTT 59.156 45.455 12.30 0.00 38.24 1.82
2935 3869 3.118371 AGGGGAGTCCATACGTCATTTTC 60.118 47.826 12.30 0.00 38.24 2.29
2936 3870 3.118371 GGGGAGTCCATACGTCATTTTCT 60.118 47.826 12.30 0.00 35.00 2.52
2937 3871 4.514401 GGGAGTCCATACGTCATTTTCTT 58.486 43.478 12.30 0.00 0.00 2.52
2938 3872 5.395990 GGGGAGTCCATACGTCATTTTCTTA 60.396 44.000 12.30 0.00 35.00 2.10
2939 3873 5.753921 GGGAGTCCATACGTCATTTTCTTAG 59.246 44.000 12.30 0.00 0.00 2.18
2940 3874 6.338937 GGAGTCCATACGTCATTTTCTTAGT 58.661 40.000 3.60 0.00 0.00 2.24
2941 3875 6.817140 GGAGTCCATACGTCATTTTCTTAGTT 59.183 38.462 3.60 0.00 0.00 2.24
2942 3876 7.010275 GGAGTCCATACGTCATTTTCTTAGTTC 59.990 40.741 3.60 0.00 0.00 3.01
2943 3877 6.530534 AGTCCATACGTCATTTTCTTAGTTCG 59.469 38.462 0.00 0.00 0.00 3.95
2944 3878 6.529125 GTCCATACGTCATTTTCTTAGTTCGA 59.471 38.462 0.00 0.00 0.00 3.71
2945 3879 7.222224 GTCCATACGTCATTTTCTTAGTTCGAT 59.778 37.037 0.00 0.00 0.00 3.59
2946 3880 7.222031 TCCATACGTCATTTTCTTAGTTCGATG 59.778 37.037 0.00 0.00 0.00 3.84
2947 3881 5.204673 ACGTCATTTTCTTAGTTCGATGC 57.795 39.130 0.00 0.00 0.00 3.91
2948 3882 4.092968 ACGTCATTTTCTTAGTTCGATGCC 59.907 41.667 0.00 0.00 0.00 4.40
2949 3883 4.330074 CGTCATTTTCTTAGTTCGATGCCT 59.670 41.667 0.00 0.00 0.00 4.75
2950 3884 5.163854 CGTCATTTTCTTAGTTCGATGCCTT 60.164 40.000 0.00 0.00 0.00 4.35
2951 3885 6.251549 GTCATTTTCTTAGTTCGATGCCTTC 58.748 40.000 0.00 0.00 0.00 3.46
2952 3886 5.354234 TCATTTTCTTAGTTCGATGCCTTCC 59.646 40.000 0.00 0.00 0.00 3.46
2953 3887 2.981859 TCTTAGTTCGATGCCTTCCC 57.018 50.000 0.00 0.00 0.00 3.97
2954 3888 1.136305 TCTTAGTTCGATGCCTTCCCG 59.864 52.381 0.00 0.00 0.00 5.14
2955 3889 0.899720 TTAGTTCGATGCCTTCCCGT 59.100 50.000 0.00 0.00 0.00 5.28
2956 3890 0.458669 TAGTTCGATGCCTTCCCGTC 59.541 55.000 0.00 0.00 0.00 4.79
2957 3891 2.165301 GTTCGATGCCTTCCCGTCG 61.165 63.158 0.00 0.00 43.63 5.12
2959 3893 2.125326 TCGATGCCTTCCCGTCGAT 61.125 57.895 2.70 0.00 45.29 3.59
2960 3894 1.661821 CGATGCCTTCCCGTCGATC 60.662 63.158 0.00 0.00 44.71 3.69
2961 3895 1.661821 GATGCCTTCCCGTCGATCG 60.662 63.158 9.36 9.36 39.52 3.69
2962 3896 2.071844 GATGCCTTCCCGTCGATCGA 62.072 60.000 15.15 15.15 42.86 3.59
2963 3897 1.464376 ATGCCTTCCCGTCGATCGAT 61.464 55.000 22.50 0.00 42.86 3.59
2964 3898 0.820482 TGCCTTCCCGTCGATCGATA 60.820 55.000 22.50 4.72 42.86 2.92
2965 3899 0.109689 GCCTTCCCGTCGATCGATAG 60.110 60.000 22.50 17.62 42.86 2.08
2966 3900 0.522180 CCTTCCCGTCGATCGATAGG 59.478 60.000 26.16 26.16 42.86 2.57
2967 3901 1.520494 CTTCCCGTCGATCGATAGGA 58.480 55.000 31.37 28.95 42.86 2.94
2968 3902 1.197264 CTTCCCGTCGATCGATAGGAC 59.803 57.143 31.37 16.33 42.86 3.85
2971 3905 3.635588 CGTCGATCGATAGGACGTC 57.364 57.895 29.19 7.13 46.07 4.34
2972 3906 1.138337 CGTCGATCGATAGGACGTCT 58.862 55.000 29.19 4.12 46.07 4.18
2973 3907 1.526041 CGTCGATCGATAGGACGTCTT 59.474 52.381 29.19 10.98 46.07 3.01
2974 3908 2.410006 CGTCGATCGATAGGACGTCTTC 60.410 54.545 29.19 9.28 46.07 2.87
2975 3909 2.543012 GTCGATCGATAGGACGTCTTCA 59.457 50.000 22.50 0.92 36.70 3.02
2976 3910 2.543012 TCGATCGATAGGACGTCTTCAC 59.457 50.000 15.15 4.83 36.70 3.18
2977 3911 2.349627 CGATCGATAGGACGTCTTCACC 60.350 54.545 16.46 0.00 34.70 4.02
2978 3912 1.386533 TCGATAGGACGTCTTCACCC 58.613 55.000 16.46 0.00 34.70 4.61
2984 3918 0.108756 GGACGTCTTCACCCTAGTGC 60.109 60.000 16.46 0.00 44.16 4.40
3008 3942 3.181484 GGGTGAGTTTGCGGTAAAGTTTT 60.181 43.478 0.43 0.00 32.13 2.43
3019 3953 3.628487 CGGTAAAGTTTTGGGTCAGAACA 59.372 43.478 0.00 0.00 32.01 3.18
3201 4135 8.162245 GGAAAAGAATAATGACAATTTTGACGC 58.838 33.333 0.00 0.00 0.00 5.19
3277 4211 3.108376 AGAGCTCTCGGGTAGGAAATTT 58.892 45.455 11.45 0.00 34.09 1.82
3340 4274 1.944709 GACCGTGTTTTGGCTAGTGTT 59.055 47.619 0.00 0.00 0.00 3.32
3421 4355 1.400846 CACACACCGCTACTAGTCGAT 59.599 52.381 0.00 0.00 0.00 3.59
3433 4367 1.107538 TAGTCGATTCGGGGGCTCAG 61.108 60.000 6.18 0.00 0.00 3.35
3529 4463 3.922375 AGCTAGAGAGTGGGCTAAAGAT 58.078 45.455 0.00 0.00 32.94 2.40
3562 4496 2.676121 CCCATTGAGCGGTGGCAA 60.676 61.111 0.00 0.00 43.41 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.041235 GCGTCTTACTCTTACATATGGACTACT 60.041 40.741 7.80 0.00 0.00 2.57
1 2 7.076983 GCGTCTTACTCTTACATATGGACTAC 58.923 42.308 7.80 0.00 0.00 2.73
2 3 6.769341 TGCGTCTTACTCTTACATATGGACTA 59.231 38.462 7.80 0.00 0.00 2.59
4 5 5.828747 TGCGTCTTACTCTTACATATGGAC 58.171 41.667 7.80 0.70 0.00 4.02
5 6 5.826208 TCTGCGTCTTACTCTTACATATGGA 59.174 40.000 7.80 0.00 0.00 3.41
6 7 6.073327 TCTGCGTCTTACTCTTACATATGG 57.927 41.667 7.80 0.00 0.00 2.74
7 8 5.627367 GCTCTGCGTCTTACTCTTACATATG 59.373 44.000 0.00 0.00 0.00 1.78
8 9 5.533154 AGCTCTGCGTCTTACTCTTACATAT 59.467 40.000 0.00 0.00 0.00 1.78
9 10 4.882427 AGCTCTGCGTCTTACTCTTACATA 59.118 41.667 0.00 0.00 0.00 2.29
10 11 3.697045 AGCTCTGCGTCTTACTCTTACAT 59.303 43.478 0.00 0.00 0.00 2.29
11 12 3.082548 AGCTCTGCGTCTTACTCTTACA 58.917 45.455 0.00 0.00 0.00 2.41
12 13 3.487879 GGAGCTCTGCGTCTTACTCTTAC 60.488 52.174 14.64 0.00 0.00 2.34
13 14 2.683867 GGAGCTCTGCGTCTTACTCTTA 59.316 50.000 14.64 0.00 0.00 2.10
14 15 1.474879 GGAGCTCTGCGTCTTACTCTT 59.525 52.381 14.64 0.00 0.00 2.85
15 16 1.099689 GGAGCTCTGCGTCTTACTCT 58.900 55.000 14.64 0.00 0.00 3.24
16 17 0.101579 GGGAGCTCTGCGTCTTACTC 59.898 60.000 14.64 0.00 0.00 2.59
17 18 1.324005 GGGGAGCTCTGCGTCTTACT 61.324 60.000 14.64 0.00 0.00 2.24
18 19 1.142097 GGGGAGCTCTGCGTCTTAC 59.858 63.158 14.64 0.00 0.00 2.34
19 20 0.257905 TAGGGGAGCTCTGCGTCTTA 59.742 55.000 14.64 0.00 0.00 2.10
20 21 0.397816 ATAGGGGAGCTCTGCGTCTT 60.398 55.000 14.64 0.00 0.00 3.01
21 22 0.825840 GATAGGGGAGCTCTGCGTCT 60.826 60.000 14.64 6.84 0.00 4.18
22 23 1.109920 TGATAGGGGAGCTCTGCGTC 61.110 60.000 14.64 6.69 0.00 5.19
23 24 0.687757 TTGATAGGGGAGCTCTGCGT 60.688 55.000 14.64 0.00 0.00 5.24
24 25 0.683973 ATTGATAGGGGAGCTCTGCG 59.316 55.000 14.64 0.00 0.00 5.18
25 26 3.169099 TCTATTGATAGGGGAGCTCTGC 58.831 50.000 14.64 0.00 0.00 4.26
26 27 5.306678 ACTTTCTATTGATAGGGGAGCTCTG 59.693 44.000 14.64 0.00 0.00 3.35
27 28 5.306678 CACTTTCTATTGATAGGGGAGCTCT 59.693 44.000 14.64 0.00 0.00 4.09
28 29 5.305644 TCACTTTCTATTGATAGGGGAGCTC 59.694 44.000 4.71 4.71 0.00 4.09
29 30 5.219739 TCACTTTCTATTGATAGGGGAGCT 58.780 41.667 0.00 0.00 0.00 4.09
30 31 5.512232 CCTCACTTTCTATTGATAGGGGAGC 60.512 48.000 10.46 0.00 31.88 4.70
31 32 5.604650 ACCTCACTTTCTATTGATAGGGGAG 59.395 44.000 9.59 9.59 32.41 4.30
32 33 5.538877 ACCTCACTTTCTATTGATAGGGGA 58.461 41.667 0.00 0.00 0.00 4.81
33 34 5.896073 ACCTCACTTTCTATTGATAGGGG 57.104 43.478 0.00 0.00 0.00 4.79
34 35 6.058183 CCAACCTCACTTTCTATTGATAGGG 58.942 44.000 0.00 0.00 0.00 3.53
35 36 5.529060 GCCAACCTCACTTTCTATTGATAGG 59.471 44.000 0.46 0.00 0.00 2.57
36 37 6.352516 AGCCAACCTCACTTTCTATTGATAG 58.647 40.000 0.00 0.00 0.00 2.08
37 38 6.313519 AGCCAACCTCACTTTCTATTGATA 57.686 37.500 0.00 0.00 0.00 2.15
38 39 5.184892 AGCCAACCTCACTTTCTATTGAT 57.815 39.130 0.00 0.00 0.00 2.57
39 40 4.640771 AGCCAACCTCACTTTCTATTGA 57.359 40.909 0.00 0.00 0.00 2.57
40 41 4.330074 CGTAGCCAACCTCACTTTCTATTG 59.670 45.833 0.00 0.00 0.00 1.90
41 42 4.504858 CGTAGCCAACCTCACTTTCTATT 58.495 43.478 0.00 0.00 0.00 1.73
42 43 3.118738 CCGTAGCCAACCTCACTTTCTAT 60.119 47.826 0.00 0.00 0.00 1.98
43 44 2.232941 CCGTAGCCAACCTCACTTTCTA 59.767 50.000 0.00 0.00 0.00 2.10
44 45 1.002087 CCGTAGCCAACCTCACTTTCT 59.998 52.381 0.00 0.00 0.00 2.52
45 46 1.270678 ACCGTAGCCAACCTCACTTTC 60.271 52.381 0.00 0.00 0.00 2.62
46 47 0.763035 ACCGTAGCCAACCTCACTTT 59.237 50.000 0.00 0.00 0.00 2.66
47 48 1.274447 GTACCGTAGCCAACCTCACTT 59.726 52.381 0.00 0.00 0.00 3.16
48 49 0.893447 GTACCGTAGCCAACCTCACT 59.107 55.000 0.00 0.00 0.00 3.41
49 50 0.893447 AGTACCGTAGCCAACCTCAC 59.107 55.000 0.00 0.00 0.00 3.51
50 51 0.892755 CAGTACCGTAGCCAACCTCA 59.107 55.000 0.00 0.00 0.00 3.86
51 52 1.134560 CTCAGTACCGTAGCCAACCTC 59.865 57.143 0.00 0.00 0.00 3.85
52 53 1.183549 CTCAGTACCGTAGCCAACCT 58.816 55.000 0.00 0.00 0.00 3.50
53 54 1.180029 TCTCAGTACCGTAGCCAACC 58.820 55.000 0.00 0.00 0.00 3.77
54 55 2.426024 TCATCTCAGTACCGTAGCCAAC 59.574 50.000 0.00 0.00 0.00 3.77
55 56 2.730382 TCATCTCAGTACCGTAGCCAA 58.270 47.619 0.00 0.00 0.00 4.52
56 57 2.430248 TCATCTCAGTACCGTAGCCA 57.570 50.000 0.00 0.00 0.00 4.75
57 58 5.449107 TTTATCATCTCAGTACCGTAGCC 57.551 43.478 0.00 0.00 0.00 3.93
82 83 2.171448 ACTGGCTCTCTTTTGTCACACT 59.829 45.455 0.00 0.00 0.00 3.55
83 84 2.565841 ACTGGCTCTCTTTTGTCACAC 58.434 47.619 0.00 0.00 0.00 3.82
84 85 2.945008 CAACTGGCTCTCTTTTGTCACA 59.055 45.455 0.00 0.00 0.00 3.58
85 86 3.206150 TCAACTGGCTCTCTTTTGTCAC 58.794 45.455 0.00 0.00 0.00 3.67
143 147 2.223203 GCATGCACTATCACTGAACAGC 60.223 50.000 14.21 0.00 0.00 4.40
180 184 6.012157 AGGGAGATAATTGGTCTATCATTGGG 60.012 42.308 0.00 0.00 0.00 4.12
193 197 3.475566 TCCAAGCGAGGGAGATAATTG 57.524 47.619 0.00 0.00 0.00 2.32
207 211 0.606673 ACCCGCTTCTTCTTCCAAGC 60.607 55.000 0.00 0.00 41.46 4.01
212 216 0.729690 GCATCACCCGCTTCTTCTTC 59.270 55.000 0.00 0.00 0.00 2.87
213 217 0.326264 AGCATCACCCGCTTCTTCTT 59.674 50.000 0.00 0.00 35.82 2.52
214 218 0.107945 GAGCATCACCCGCTTCTTCT 60.108 55.000 0.00 0.00 40.63 2.85
217 221 1.992277 AGGAGCATCACCCGCTTCT 60.992 57.895 0.00 0.00 40.68 2.85
225 229 4.152759 CGTACTAGTAGCTAGGAGCATCAC 59.847 50.000 1.87 0.00 45.56 3.06
228 232 4.354893 ACGTACTAGTAGCTAGGAGCAT 57.645 45.455 1.87 0.00 45.56 3.79
243 247 5.219343 AGGCCTTTGTTTAAGTACGTACT 57.781 39.130 22.45 22.45 38.39 2.73
244 248 7.331687 TGATTAGGCCTTTGTTTAAGTACGTAC 59.668 37.037 12.58 18.10 31.56 3.67
245 249 7.385267 TGATTAGGCCTTTGTTTAAGTACGTA 58.615 34.615 12.58 0.00 31.56 3.57
246 250 6.232692 TGATTAGGCCTTTGTTTAAGTACGT 58.767 36.000 12.58 0.00 31.56 3.57
248 252 6.552629 GCTGATTAGGCCTTTGTTTAAGTAC 58.447 40.000 12.58 0.00 31.56 2.73
249 253 5.353123 CGCTGATTAGGCCTTTGTTTAAGTA 59.647 40.000 12.58 0.00 31.56 2.24
250 254 4.156008 CGCTGATTAGGCCTTTGTTTAAGT 59.844 41.667 12.58 0.00 31.56 2.24
252 256 3.442273 CCGCTGATTAGGCCTTTGTTTAA 59.558 43.478 12.58 0.00 0.00 1.52
285 751 2.122783 TAATTAGTGTGGTGCCTGGC 57.877 50.000 12.87 12.87 0.00 4.85
286 752 2.358898 GCATAATTAGTGTGGTGCCTGG 59.641 50.000 0.00 0.00 0.00 4.45
287 753 3.282021 AGCATAATTAGTGTGGTGCCTG 58.718 45.455 3.46 0.00 33.29 4.85
288 754 3.652057 AGCATAATTAGTGTGGTGCCT 57.348 42.857 3.46 0.00 33.29 4.75
289 755 5.123227 TCTAAGCATAATTAGTGTGGTGCC 58.877 41.667 3.46 0.00 34.87 5.01
290 756 6.677781 TTCTAAGCATAATTAGTGTGGTGC 57.322 37.500 0.00 0.00 34.87 5.01
291 757 8.492673 TCTTTCTAAGCATAATTAGTGTGGTG 57.507 34.615 0.00 0.00 34.87 4.17
292 758 9.331282 GATCTTTCTAAGCATAATTAGTGTGGT 57.669 33.333 0.00 0.00 34.87 4.16
348 814 3.806625 ACAATTCCTTATGCCACATGC 57.193 42.857 0.00 0.00 41.77 4.06
382 848 2.234908 GTGAGTGGCCAGTCAAGTCTAT 59.765 50.000 38.66 1.47 41.91 1.98
408 874 4.226803 CGCAGAAAACAAAGGCGG 57.773 55.556 0.00 0.00 43.63 6.13
425 891 1.153349 CTTCAGCTTAGCCGTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
449 915 7.716998 AGGAGTACTTGCTAATGATATTTGGTG 59.283 37.037 0.00 0.00 0.00 4.17
451 917 7.389053 GGAGGAGTACTTGCTAATGATATTTGG 59.611 40.741 0.00 0.00 0.00 3.28
457 923 7.863901 ATTAGGAGGAGTACTTGCTAATGAT 57.136 36.000 16.28 0.00 41.98 2.45
473 945 1.766496 TCCCCGCTGTTAATTAGGAGG 59.234 52.381 0.00 0.00 0.00 4.30
565 1048 3.425892 GCATGCAGACTCAAGTGTGAATC 60.426 47.826 14.21 0.00 41.29 2.52
580 1063 1.472026 GGTTTATGGGCTTGCATGCAG 60.472 52.381 21.50 15.64 34.04 4.41
646 1129 3.421844 AGCTTGTTTACTGGATTGGGTC 58.578 45.455 0.00 0.00 0.00 4.46
667 1168 4.097437 CGGAGTACTGATTAGCACCAGTAA 59.903 45.833 0.00 0.00 44.50 2.24
690 1191 7.710907 TCTTGTGTCAATGTATAATGCTAGACC 59.289 37.037 0.00 0.00 0.00 3.85
714 1215 9.289782 AGTATTTGTATTTTGAAAGAGTGCTCT 57.710 29.630 0.00 0.00 42.75 4.09
750 1251 5.918011 GCATTTCTCGAGTCAATAGGAGTAG 59.082 44.000 13.13 0.76 0.00 2.57
758 1259 3.055530 AGACCTGCATTTCTCGAGTCAAT 60.056 43.478 13.13 9.34 0.00 2.57
781 1282 1.009900 CGCTAGGAAGTAGGACGCG 60.010 63.158 3.53 3.53 0.00 6.01
782 1283 1.303309 TACGCTAGGAAGTAGGACGC 58.697 55.000 0.00 0.00 0.00 5.19
783 1284 5.008019 TGTTTATACGCTAGGAAGTAGGACG 59.992 44.000 0.00 0.00 0.00 4.79
784 1285 6.382869 TGTTTATACGCTAGGAAGTAGGAC 57.617 41.667 0.00 0.00 0.00 3.85
785 1286 6.460676 GCTTGTTTATACGCTAGGAAGTAGGA 60.461 42.308 0.00 0.00 0.00 2.94
789 1290 4.081309 TGGCTTGTTTATACGCTAGGAAGT 60.081 41.667 0.00 0.00 0.00 3.01
799 1300 8.088365 ACCTGATTTTCTTTGGCTTGTTTATAC 58.912 33.333 0.00 0.00 0.00 1.47
800 1301 8.189119 ACCTGATTTTCTTTGGCTTGTTTATA 57.811 30.769 0.00 0.00 0.00 0.98
801 1302 7.066307 ACCTGATTTTCTTTGGCTTGTTTAT 57.934 32.000 0.00 0.00 0.00 1.40
843 1349 1.001406 AGCTACAACACTGAGCTGGAC 59.999 52.381 0.00 0.00 44.77 4.02
865 1375 0.811616 GCTACTTATGCTGCCACGCT 60.812 55.000 0.00 0.00 0.00 5.07
935 1459 2.158957 TGGTCAGAGAGTGTGAACCAAC 60.159 50.000 0.00 0.00 29.85 3.77
937 1461 1.412710 GTGGTCAGAGAGTGTGAACCA 59.587 52.381 0.00 0.00 29.85 3.67
971 1499 0.248843 GAGCTCTGTCAGGAACCCAG 59.751 60.000 6.43 0.00 0.00 4.45
997 1546 4.839706 GCCATCCGCCCCCATGTT 62.840 66.667 0.00 0.00 0.00 2.71
1110 1659 2.166459 CTGGCGGTAGAAGATGAAGACA 59.834 50.000 0.00 0.00 0.00 3.41
1246 1812 1.876497 TTCCTGCAAAATCAGCGGCC 61.876 55.000 0.00 0.00 37.05 6.13
1248 1814 2.437200 TTTTCCTGCAAAATCAGCGG 57.563 45.000 0.00 0.00 38.10 5.52
1405 2119 3.183793 TGGATCAGTCATTCATCACCG 57.816 47.619 0.00 0.00 0.00 4.94
1408 2122 5.747342 TCAACATGGATCAGTCATTCATCA 58.253 37.500 0.00 0.00 0.00 3.07
1424 2144 5.712004 TGCAAACAGAACCATATCAACATG 58.288 37.500 0.00 0.00 0.00 3.21
1439 2159 6.246420 AGCTAAATGTAGTTCTGCAAACAG 57.754 37.500 12.28 0.00 45.95 3.16
1449 2169 9.502091 TTGTACAGATTCAAGCTAAATGTAGTT 57.498 29.630 0.00 0.00 0.00 2.24
1561 2281 2.762327 GGTGGGTCGATTAGTACCTCAA 59.238 50.000 0.00 0.00 35.97 3.02
1575 2295 0.900421 GTACAGTGGTAGGGTGGGTC 59.100 60.000 0.00 0.00 0.00 4.46
1577 2297 0.612732 TCGTACAGTGGTAGGGTGGG 60.613 60.000 0.00 0.00 36.33 4.61
1752 2616 2.073716 TGGTTCACCGGGTTCAGGT 61.074 57.895 6.32 0.00 43.97 4.00
1891 2755 1.079819 GTACTCCTTGAGCAGCGCA 60.080 57.895 11.47 0.00 32.04 6.09
2056 2923 9.159364 CATTGACAAGACAGAGAATTAAGATGA 57.841 33.333 0.00 0.00 0.00 2.92
2057 2924 8.396390 CCATTGACAAGACAGAGAATTAAGATG 58.604 37.037 0.00 0.00 0.00 2.90
2058 2925 8.105829 ACCATTGACAAGACAGAGAATTAAGAT 58.894 33.333 0.00 0.00 0.00 2.40
2087 2978 1.553690 CCAGTCCATCAACCGGGAGT 61.554 60.000 6.32 0.00 37.32 3.85
2088 2979 1.221840 CCAGTCCATCAACCGGGAG 59.778 63.158 6.32 0.00 32.85 4.30
2089 2980 1.537889 ACCAGTCCATCAACCGGGA 60.538 57.895 6.32 0.00 0.00 5.14
2090 2981 1.377202 CACCAGTCCATCAACCGGG 60.377 63.158 6.32 0.00 0.00 5.73
2091 2982 2.040544 GCACCAGTCCATCAACCGG 61.041 63.158 0.00 0.00 0.00 5.28
2092 2983 0.677731 ATGCACCAGTCCATCAACCG 60.678 55.000 0.00 0.00 0.00 4.44
2093 2984 0.813184 CATGCACCAGTCCATCAACC 59.187 55.000 0.00 0.00 0.00 3.77
2094 2985 0.813184 CCATGCACCAGTCCATCAAC 59.187 55.000 0.00 0.00 0.00 3.18
2095 2986 0.323633 CCCATGCACCAGTCCATCAA 60.324 55.000 0.00 0.00 0.00 2.57
2096 2987 1.303948 CCCATGCACCAGTCCATCA 59.696 57.895 0.00 0.00 0.00 3.07
2097 2988 1.454479 CCCCATGCACCAGTCCATC 60.454 63.158 0.00 0.00 0.00 3.51
2098 2989 2.240918 ACCCCATGCACCAGTCCAT 61.241 57.895 0.00 0.00 0.00 3.41
2103 2994 2.361610 GTCCACCCCATGCACCAG 60.362 66.667 0.00 0.00 0.00 4.00
2240 3134 2.552315 GCAGAAAATGGTGAGGACGAAA 59.448 45.455 0.00 0.00 0.00 3.46
2315 3209 3.815401 CGGAAGCTTGAAAGAAGAAGGAA 59.185 43.478 2.10 0.00 0.00 3.36
2316 3210 3.403038 CGGAAGCTTGAAAGAAGAAGGA 58.597 45.455 2.10 0.00 0.00 3.36
2317 3211 3.820777 CGGAAGCTTGAAAGAAGAAGG 57.179 47.619 2.10 0.00 0.00 3.46
2336 3230 2.159379 TGTGTAGATCAGTAGTGCAGCG 60.159 50.000 0.00 0.00 0.00 5.18
2557 3462 1.544759 CCCCGTTAACTTGGTTGCTCT 60.545 52.381 3.71 0.00 0.00 4.09
2642 3547 2.566279 GCATGAGATAGATGGAGCCTCA 59.434 50.000 0.00 0.00 38.12 3.86
2678 3595 6.914665 TCCCCAATCTAATCAGAATTCACAT 58.085 36.000 8.44 0.00 33.50 3.21
2690 3607 5.339118 GGCCATTTTTGTTCCCCAATCTAAT 60.339 40.000 0.00 0.00 31.81 1.73
2692 3609 3.517500 GGCCATTTTTGTTCCCCAATCTA 59.482 43.478 0.00 0.00 31.81 1.98
2694 3611 2.617788 GGGCCATTTTTGTTCCCCAATC 60.618 50.000 4.39 0.00 31.81 2.67
2695 3612 1.354031 GGGCCATTTTTGTTCCCCAAT 59.646 47.619 4.39 0.00 31.81 3.16
2699 3616 4.260985 CAATTAGGGCCATTTTTGTTCCC 58.739 43.478 6.18 0.00 37.24 3.97
2700 3617 4.019771 TCCAATTAGGGCCATTTTTGTTCC 60.020 41.667 6.18 0.00 38.24 3.62
2701 3618 5.159273 TCCAATTAGGGCCATTTTTGTTC 57.841 39.130 6.18 0.00 38.24 3.18
2702 3619 5.777526 ATCCAATTAGGGCCATTTTTGTT 57.222 34.783 6.18 0.00 38.24 2.83
2710 3641 4.078922 TGGTGATAAATCCAATTAGGGCCA 60.079 41.667 6.18 0.00 38.24 5.36
2717 3648 7.174107 CCAAAGAGTGGTGATAAATCCAATT 57.826 36.000 0.00 0.00 43.20 2.32
2767 3701 6.694447 CAATTTGAGGTGATCAGGATTTGTT 58.306 36.000 0.00 0.00 39.68 2.83
2776 3710 8.467963 ACATAATATGCAATTTGAGGTGATCA 57.532 30.769 0.00 0.00 35.62 2.92
2799 3733 6.488683 ACTTTGCATTGTAAGGCTTAGTAACA 59.511 34.615 7.33 1.42 36.52 2.41
2800 3734 6.909909 ACTTTGCATTGTAAGGCTTAGTAAC 58.090 36.000 7.33 0.00 36.52 2.50
2801 3735 7.519032 AACTTTGCATTGTAAGGCTTAGTAA 57.481 32.000 7.33 6.77 36.52 2.24
2803 3737 6.040391 TCAAACTTTGCATTGTAAGGCTTAGT 59.960 34.615 7.33 0.00 36.52 2.24
2804 3738 6.446318 TCAAACTTTGCATTGTAAGGCTTAG 58.554 36.000 7.33 0.00 36.52 2.18
2805 3739 6.398234 TCAAACTTTGCATTGTAAGGCTTA 57.602 33.333 2.04 2.04 36.52 3.09
2806 3740 5.275067 TCAAACTTTGCATTGTAAGGCTT 57.725 34.783 4.58 4.58 36.52 4.35
2807 3741 4.935352 TCAAACTTTGCATTGTAAGGCT 57.065 36.364 2.86 0.00 36.52 4.58
2808 3742 4.084380 GCTTCAAACTTTGCATTGTAAGGC 60.084 41.667 1.22 0.00 36.03 4.35
2809 3743 4.448732 GGCTTCAAACTTTGCATTGTAAGG 59.551 41.667 1.22 0.00 0.00 2.69
2810 3744 5.291971 AGGCTTCAAACTTTGCATTGTAAG 58.708 37.500 0.00 0.00 0.00 2.34
2811 3745 5.275067 AGGCTTCAAACTTTGCATTGTAA 57.725 34.783 0.00 0.00 0.00 2.41
2812 3746 4.935352 AGGCTTCAAACTTTGCATTGTA 57.065 36.364 0.00 0.00 0.00 2.41
2813 3747 3.825143 AGGCTTCAAACTTTGCATTGT 57.175 38.095 0.00 0.00 0.00 2.71
2814 3748 3.495753 GGAAGGCTTCAAACTTTGCATTG 59.504 43.478 27.17 0.00 29.51 2.82
2815 3749 3.389002 AGGAAGGCTTCAAACTTTGCATT 59.611 39.130 27.17 0.00 32.06 3.56
2816 3750 2.967887 AGGAAGGCTTCAAACTTTGCAT 59.032 40.909 27.17 0.00 0.00 3.96
2817 3751 2.362077 GAGGAAGGCTTCAAACTTTGCA 59.638 45.455 27.17 0.00 0.00 4.08
2818 3752 2.288457 GGAGGAAGGCTTCAAACTTTGC 60.288 50.000 27.17 8.48 0.00 3.68
2819 3753 2.030805 CGGAGGAAGGCTTCAAACTTTG 60.031 50.000 27.17 9.12 0.00 2.77
2820 3754 2.230660 CGGAGGAAGGCTTCAAACTTT 58.769 47.619 27.17 6.47 0.00 2.66
2821 3755 1.143073 ACGGAGGAAGGCTTCAAACTT 59.857 47.619 27.17 8.27 0.00 2.66
2822 3756 0.765510 ACGGAGGAAGGCTTCAAACT 59.234 50.000 27.17 15.83 0.00 2.66
2823 3757 1.605753 AACGGAGGAAGGCTTCAAAC 58.394 50.000 27.17 16.80 0.00 2.93
2824 3758 2.227194 GAAACGGAGGAAGGCTTCAAA 58.773 47.619 27.17 0.00 0.00 2.69
2825 3759 1.876416 CGAAACGGAGGAAGGCTTCAA 60.876 52.381 27.17 0.00 0.00 2.69
2826 3760 0.320421 CGAAACGGAGGAAGGCTTCA 60.320 55.000 27.17 0.00 0.00 3.02
2827 3761 0.037605 TCGAAACGGAGGAAGGCTTC 60.038 55.000 18.98 18.98 0.00 3.86
2828 3762 0.395312 TTCGAAACGGAGGAAGGCTT 59.605 50.000 0.00 0.00 0.00 4.35
2829 3763 0.395312 TTTCGAAACGGAGGAAGGCT 59.605 50.000 6.47 0.00 0.00 4.58
2830 3764 1.232119 TTTTCGAAACGGAGGAAGGC 58.768 50.000 10.79 0.00 0.00 4.35
2849 3783 5.186992 ACAGTGTAAGGCTTCAAACCTTTTT 59.813 36.000 1.30 0.00 45.39 1.94
2850 3784 4.709886 ACAGTGTAAGGCTTCAAACCTTTT 59.290 37.500 1.30 0.00 45.39 2.27
2851 3785 4.278310 ACAGTGTAAGGCTTCAAACCTTT 58.722 39.130 1.30 0.00 45.39 3.11
2853 3787 3.577805 ACAGTGTAAGGCTTCAAACCT 57.422 42.857 1.30 0.00 40.02 3.50
2854 3788 5.705905 AGATTACAGTGTAAGGCTTCAAACC 59.294 40.000 19.87 0.00 0.00 3.27
2855 3789 6.803154 AGATTACAGTGTAAGGCTTCAAAC 57.197 37.500 19.87 0.51 0.00 2.93
2856 3790 7.500892 TCAAAGATTACAGTGTAAGGCTTCAAA 59.499 33.333 23.37 14.45 0.00 2.69
2857 3791 6.995686 TCAAAGATTACAGTGTAAGGCTTCAA 59.004 34.615 23.37 16.03 0.00 2.69
2858 3792 6.530120 TCAAAGATTACAGTGTAAGGCTTCA 58.470 36.000 23.37 15.39 0.00 3.02
2859 3793 7.435068 TTCAAAGATTACAGTGTAAGGCTTC 57.565 36.000 23.37 15.92 0.00 3.86
2885 3819 4.358494 AGTAGAACTACAAGTAGCGCAG 57.642 45.455 11.47 0.00 38.48 5.18
2886 3820 4.778534 AAGTAGAACTACAAGTAGCGCA 57.221 40.909 11.47 0.00 38.48 6.09
2887 3821 7.572502 TTAAAAGTAGAACTACAAGTAGCGC 57.427 36.000 13.34 0.00 38.48 5.92
2891 3825 9.783081 CCCCTTTTAAAAGTAGAACTACAAGTA 57.217 33.333 23.04 1.16 38.48 2.24
2892 3826 8.496916 TCCCCTTTTAAAAGTAGAACTACAAGT 58.503 33.333 23.04 1.95 38.48 3.16
2893 3827 8.913487 TCCCCTTTTAAAAGTAGAACTACAAG 57.087 34.615 23.04 6.38 38.48 3.16
2894 3828 8.496916 ACTCCCCTTTTAAAAGTAGAACTACAA 58.503 33.333 23.04 0.00 38.48 2.41
2895 3829 8.037723 ACTCCCCTTTTAAAAGTAGAACTACA 57.962 34.615 23.04 0.88 38.48 2.74
2896 3830 7.605691 GGACTCCCCTTTTAAAAGTAGAACTAC 59.394 40.741 23.04 4.05 34.20 2.73
2897 3831 7.293062 TGGACTCCCCTTTTAAAAGTAGAACTA 59.707 37.037 23.04 12.25 34.20 2.24
2898 3832 6.102174 TGGACTCCCCTTTTAAAAGTAGAACT 59.898 38.462 23.04 9.47 34.20 3.01
2899 3833 6.301486 TGGACTCCCCTTTTAAAAGTAGAAC 58.699 40.000 23.04 15.18 34.20 3.01
2900 3834 6.518516 TGGACTCCCCTTTTAAAAGTAGAA 57.481 37.500 23.04 7.90 34.20 2.10
2901 3835 6.713731 ATGGACTCCCCTTTTAAAAGTAGA 57.286 37.500 23.04 17.85 34.20 2.59
2902 3836 6.537660 CGTATGGACTCCCCTTTTAAAAGTAG 59.462 42.308 23.04 18.74 34.20 2.57
2903 3837 6.013466 ACGTATGGACTCCCCTTTTAAAAGTA 60.013 38.462 23.04 9.98 34.20 2.24
2904 3838 5.221986 ACGTATGGACTCCCCTTTTAAAAGT 60.222 40.000 23.04 8.04 34.20 2.66
2905 3839 5.250982 ACGTATGGACTCCCCTTTTAAAAG 58.749 41.667 19.19 19.19 35.38 2.27
2906 3840 5.221884 TGACGTATGGACTCCCCTTTTAAAA 60.222 40.000 0.00 0.00 35.38 1.52
2907 3841 4.286549 TGACGTATGGACTCCCCTTTTAAA 59.713 41.667 0.00 0.00 35.38 1.52
2908 3842 3.839490 TGACGTATGGACTCCCCTTTTAA 59.161 43.478 0.00 0.00 35.38 1.52
2909 3843 3.443052 TGACGTATGGACTCCCCTTTTA 58.557 45.455 0.00 0.00 35.38 1.52
2910 3844 2.262637 TGACGTATGGACTCCCCTTTT 58.737 47.619 0.00 0.00 35.38 2.27
2911 3845 1.946984 TGACGTATGGACTCCCCTTT 58.053 50.000 0.00 0.00 35.38 3.11
2912 3846 2.176247 ATGACGTATGGACTCCCCTT 57.824 50.000 0.00 0.00 35.38 3.95
2913 3847 2.176247 AATGACGTATGGACTCCCCT 57.824 50.000 0.00 0.00 35.38 4.79
2914 3848 3.118371 AGAAAATGACGTATGGACTCCCC 60.118 47.826 0.00 0.00 0.00 4.81
2915 3849 4.138487 AGAAAATGACGTATGGACTCCC 57.862 45.455 0.00 0.00 0.00 4.30
2916 3850 6.338937 ACTAAGAAAATGACGTATGGACTCC 58.661 40.000 0.00 0.00 0.00 3.85
2917 3851 7.253684 CGAACTAAGAAAATGACGTATGGACTC 60.254 40.741 0.00 0.00 0.00 3.36
2918 3852 6.530534 CGAACTAAGAAAATGACGTATGGACT 59.469 38.462 0.00 0.00 0.00 3.85
2919 3853 6.529125 TCGAACTAAGAAAATGACGTATGGAC 59.471 38.462 0.00 0.00 0.00 4.02
2920 3854 6.623486 TCGAACTAAGAAAATGACGTATGGA 58.377 36.000 0.00 0.00 0.00 3.41
2921 3855 6.880822 TCGAACTAAGAAAATGACGTATGG 57.119 37.500 0.00 0.00 0.00 2.74
2922 3856 6.841286 GCATCGAACTAAGAAAATGACGTATG 59.159 38.462 0.00 0.00 0.00 2.39
2923 3857 6.018994 GGCATCGAACTAAGAAAATGACGTAT 60.019 38.462 0.00 0.00 0.00 3.06
2924 3858 5.290158 GGCATCGAACTAAGAAAATGACGTA 59.710 40.000 0.00 0.00 0.00 3.57
2925 3859 4.092968 GGCATCGAACTAAGAAAATGACGT 59.907 41.667 0.00 0.00 0.00 4.34
2926 3860 4.330074 AGGCATCGAACTAAGAAAATGACG 59.670 41.667 0.00 0.00 0.00 4.35
2927 3861 5.803020 AGGCATCGAACTAAGAAAATGAC 57.197 39.130 0.00 0.00 0.00 3.06
2928 3862 5.354234 GGAAGGCATCGAACTAAGAAAATGA 59.646 40.000 0.00 0.00 0.00 2.57
2929 3863 5.449177 GGGAAGGCATCGAACTAAGAAAATG 60.449 44.000 0.00 0.00 0.00 2.32
2930 3864 4.640647 GGGAAGGCATCGAACTAAGAAAAT 59.359 41.667 0.00 0.00 0.00 1.82
2931 3865 4.007659 GGGAAGGCATCGAACTAAGAAAA 58.992 43.478 0.00 0.00 0.00 2.29
2932 3866 3.606687 GGGAAGGCATCGAACTAAGAAA 58.393 45.455 0.00 0.00 0.00 2.52
2933 3867 2.418197 CGGGAAGGCATCGAACTAAGAA 60.418 50.000 0.00 0.00 0.00 2.52
2934 3868 1.136305 CGGGAAGGCATCGAACTAAGA 59.864 52.381 0.00 0.00 0.00 2.10
2935 3869 1.134788 ACGGGAAGGCATCGAACTAAG 60.135 52.381 0.00 0.00 0.00 2.18
2936 3870 0.899720 ACGGGAAGGCATCGAACTAA 59.100 50.000 0.00 0.00 0.00 2.24
2937 3871 0.458669 GACGGGAAGGCATCGAACTA 59.541 55.000 0.00 0.00 0.00 2.24
2938 3872 1.218316 GACGGGAAGGCATCGAACT 59.782 57.895 0.00 0.00 0.00 3.01
2939 3873 2.165301 CGACGGGAAGGCATCGAAC 61.165 63.158 0.00 0.00 36.70 3.95
2940 3874 1.672854 ATCGACGGGAAGGCATCGAA 61.673 55.000 0.00 0.00 45.77 3.71
2941 3875 2.071844 GATCGACGGGAAGGCATCGA 62.072 60.000 0.00 0.00 46.59 3.59
2942 3876 1.661821 GATCGACGGGAAGGCATCG 60.662 63.158 0.00 0.00 35.91 3.84
2943 3877 1.661821 CGATCGACGGGAAGGCATC 60.662 63.158 10.26 0.00 38.46 3.91
2944 3878 1.464376 ATCGATCGACGGGAAGGCAT 61.464 55.000 22.06 0.00 42.82 4.40
2945 3879 0.820482 TATCGATCGACGGGAAGGCA 60.820 55.000 22.06 0.00 42.82 4.75
2946 3880 0.109689 CTATCGATCGACGGGAAGGC 60.110 60.000 22.06 0.00 42.82 4.35
2947 3881 0.522180 CCTATCGATCGACGGGAAGG 59.478 60.000 22.06 17.07 42.82 3.46
2948 3882 1.197264 GTCCTATCGATCGACGGGAAG 59.803 57.143 30.02 18.62 42.82 3.46
2949 3883 1.233019 GTCCTATCGATCGACGGGAA 58.767 55.000 30.02 17.93 42.82 3.97
2950 3884 0.947660 CGTCCTATCGATCGACGGGA 60.948 60.000 27.70 26.81 44.26 5.14
2951 3885 1.496393 CGTCCTATCGATCGACGGG 59.504 63.158 27.70 25.09 44.26 5.28
2954 3888 2.543012 TGAAGACGTCCTATCGATCGAC 59.457 50.000 22.06 6.91 34.70 4.20
2955 3889 2.543012 GTGAAGACGTCCTATCGATCGA 59.457 50.000 21.86 21.86 34.70 3.59
2956 3890 2.349627 GGTGAAGACGTCCTATCGATCG 60.350 54.545 13.01 9.36 34.70 3.69
2957 3891 2.030981 GGGTGAAGACGTCCTATCGATC 60.031 54.545 13.01 0.52 34.70 3.69
2958 3892 1.955080 GGGTGAAGACGTCCTATCGAT 59.045 52.381 13.01 2.16 34.70 3.59
2959 3893 1.064906 AGGGTGAAGACGTCCTATCGA 60.065 52.381 13.01 0.00 34.70 3.59
2960 3894 1.390565 AGGGTGAAGACGTCCTATCG 58.609 55.000 13.01 0.00 0.00 2.92
2961 3895 3.315749 CACTAGGGTGAAGACGTCCTATC 59.684 52.174 13.01 9.21 45.61 2.08
2962 3896 3.288964 CACTAGGGTGAAGACGTCCTAT 58.711 50.000 13.01 0.00 45.61 2.57
2963 3897 2.719739 CACTAGGGTGAAGACGTCCTA 58.280 52.381 13.01 5.07 45.61 2.94
2964 3898 1.546961 CACTAGGGTGAAGACGTCCT 58.453 55.000 13.01 0.00 45.61 3.85
2965 3899 0.108756 GCACTAGGGTGAAGACGTCC 60.109 60.000 13.01 0.00 45.61 4.79
2966 3900 0.889306 AGCACTAGGGTGAAGACGTC 59.111 55.000 7.70 7.70 45.61 4.34
2967 3901 3.053146 AGCACTAGGGTGAAGACGT 57.947 52.632 0.00 0.00 45.61 4.34
2977 3911 1.813513 CAAACTCACCCAGCACTAGG 58.186 55.000 0.00 0.00 0.00 3.02
2978 3912 1.160137 GCAAACTCACCCAGCACTAG 58.840 55.000 0.00 0.00 0.00 2.57
2984 3918 1.535462 CTTTACCGCAAACTCACCCAG 59.465 52.381 0.00 0.00 0.00 4.45
3008 3942 0.181587 TCGGCTTTTGTTCTGACCCA 59.818 50.000 0.00 0.00 0.00 4.51
3201 4135 5.818136 ATTGAACATAAACGACCATCTGG 57.182 39.130 0.00 0.00 42.17 3.86
3277 4211 2.769893 GGTAACGAGTTTGCCCAAGTA 58.230 47.619 0.00 0.00 33.90 2.24
3340 4274 3.496331 GGGAAACTTCTGTTCCCAATCA 58.504 45.455 15.82 0.00 40.29 2.57
3421 4355 1.306141 ATGAGTCTGAGCCCCCGAA 60.306 57.895 0.00 0.00 0.00 4.30
3506 4440 5.068215 TCTTTAGCCCACTCTCTAGCTAT 57.932 43.478 0.00 0.00 37.64 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.