Multiple sequence alignment - TraesCS3B01G366800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G366800 | chr3B | 100.000 | 3628 | 0 | 0 | 1 | 3628 | 578986672 | 578990299 | 0.000000e+00 | 6700 |
1 | TraesCS3B01G366800 | chr3A | 88.647 | 2669 | 171 | 56 | 254 | 2831 | 582344947 | 582342320 | 0.000000e+00 | 3129 |
2 | TraesCS3B01G366800 | chr3A | 86.592 | 179 | 16 | 3 | 69 | 243 | 582345594 | 582345420 | 1.330000e-44 | 191 |
3 | TraesCS3B01G366800 | chr3D | 88.443 | 2639 | 160 | 52 | 258 | 2831 | 441572102 | 441569544 | 0.000000e+00 | 3049 |
4 | TraesCS3B01G366800 | chr3D | 87.619 | 105 | 9 | 4 | 86 | 188 | 441572223 | 441572121 | 6.360000e-23 | 119 |
5 | TraesCS3B01G366800 | chr2D | 83.713 | 1228 | 144 | 41 | 1617 | 2831 | 600037927 | 600039111 | 0.000000e+00 | 1109 |
6 | TraesCS3B01G366800 | chr2D | 77.365 | 592 | 62 | 36 | 792 | 1334 | 600036887 | 600037455 | 5.930000e-73 | 285 |
7 | TraesCS3B01G366800 | chr2B | 85.874 | 1076 | 109 | 31 | 1617 | 2672 | 729957223 | 729958275 | 0.000000e+00 | 1105 |
8 | TraesCS3B01G366800 | chr2B | 94.607 | 649 | 34 | 1 | 2980 | 3628 | 551485323 | 551485970 | 0.000000e+00 | 1003 |
9 | TraesCS3B01G366800 | chr2B | 77.885 | 832 | 91 | 49 | 792 | 1570 | 729956285 | 729957076 | 7.200000e-117 | 431 |
10 | TraesCS3B01G366800 | chrUn | 95.686 | 649 | 27 | 1 | 2980 | 3628 | 3838740 | 3839387 | 0.000000e+00 | 1042 |
11 | TraesCS3B01G366800 | chr4B | 95.532 | 649 | 29 | 0 | 2980 | 3628 | 234195698 | 234196346 | 0.000000e+00 | 1038 |
12 | TraesCS3B01G366800 | chr4B | 94.915 | 649 | 33 | 0 | 2980 | 3628 | 517360607 | 517361255 | 0.000000e+00 | 1016 |
13 | TraesCS3B01G366800 | chr6B | 95.223 | 649 | 31 | 0 | 2980 | 3628 | 19978780 | 19978132 | 0.000000e+00 | 1027 |
14 | TraesCS3B01G366800 | chr6B | 94.453 | 649 | 36 | 0 | 2980 | 3628 | 40571404 | 40572052 | 0.000000e+00 | 1000 |
15 | TraesCS3B01G366800 | chr4A | 94.761 | 649 | 32 | 1 | 2980 | 3628 | 714413594 | 714412948 | 0.000000e+00 | 1009 |
16 | TraesCS3B01G366800 | chr2A | 84.314 | 1071 | 127 | 30 | 1617 | 2672 | 733717035 | 733718079 | 0.000000e+00 | 1009 |
17 | TraesCS3B01G366800 | chr2A | 76.817 | 578 | 76 | 26 | 803 | 1331 | 733715968 | 733716536 | 4.620000e-69 | 272 |
18 | TraesCS3B01G366800 | chr7D | 94.607 | 649 | 35 | 0 | 2980 | 3628 | 74078711 | 74079359 | 0.000000e+00 | 1005 |
19 | TraesCS3B01G366800 | chr1B | 94.607 | 649 | 35 | 0 | 2980 | 3628 | 142282954 | 142283602 | 0.000000e+00 | 1005 |
20 | TraesCS3B01G366800 | chr6D | 79.070 | 172 | 34 | 2 | 1013 | 1183 | 20589866 | 20590036 | 2.290000e-22 | 117 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G366800 | chr3B | 578986672 | 578990299 | 3627 | False | 6700.0 | 6700 | 100.0000 | 1 | 3628 | 1 | chr3B.!!$F1 | 3627 |
1 | TraesCS3B01G366800 | chr3A | 582342320 | 582345594 | 3274 | True | 1660.0 | 3129 | 87.6195 | 69 | 2831 | 2 | chr3A.!!$R1 | 2762 |
2 | TraesCS3B01G366800 | chr3D | 441569544 | 441572223 | 2679 | True | 1584.0 | 3049 | 88.0310 | 86 | 2831 | 2 | chr3D.!!$R1 | 2745 |
3 | TraesCS3B01G366800 | chr2D | 600036887 | 600039111 | 2224 | False | 697.0 | 1109 | 80.5390 | 792 | 2831 | 2 | chr2D.!!$F1 | 2039 |
4 | TraesCS3B01G366800 | chr2B | 551485323 | 551485970 | 647 | False | 1003.0 | 1003 | 94.6070 | 2980 | 3628 | 1 | chr2B.!!$F1 | 648 |
5 | TraesCS3B01G366800 | chr2B | 729956285 | 729958275 | 1990 | False | 768.0 | 1105 | 81.8795 | 792 | 2672 | 2 | chr2B.!!$F2 | 1880 |
6 | TraesCS3B01G366800 | chrUn | 3838740 | 3839387 | 647 | False | 1042.0 | 1042 | 95.6860 | 2980 | 3628 | 1 | chrUn.!!$F1 | 648 |
7 | TraesCS3B01G366800 | chr4B | 234195698 | 234196346 | 648 | False | 1038.0 | 1038 | 95.5320 | 2980 | 3628 | 1 | chr4B.!!$F1 | 648 |
8 | TraesCS3B01G366800 | chr4B | 517360607 | 517361255 | 648 | False | 1016.0 | 1016 | 94.9150 | 2980 | 3628 | 1 | chr4B.!!$F2 | 648 |
9 | TraesCS3B01G366800 | chr6B | 19978132 | 19978780 | 648 | True | 1027.0 | 1027 | 95.2230 | 2980 | 3628 | 1 | chr6B.!!$R1 | 648 |
10 | TraesCS3B01G366800 | chr6B | 40571404 | 40572052 | 648 | False | 1000.0 | 1000 | 94.4530 | 2980 | 3628 | 1 | chr6B.!!$F1 | 648 |
11 | TraesCS3B01G366800 | chr4A | 714412948 | 714413594 | 646 | True | 1009.0 | 1009 | 94.7610 | 2980 | 3628 | 1 | chr4A.!!$R1 | 648 |
12 | TraesCS3B01G366800 | chr2A | 733715968 | 733718079 | 2111 | False | 640.5 | 1009 | 80.5655 | 803 | 2672 | 2 | chr2A.!!$F1 | 1869 |
13 | TraesCS3B01G366800 | chr7D | 74078711 | 74079359 | 648 | False | 1005.0 | 1005 | 94.6070 | 2980 | 3628 | 1 | chr7D.!!$F1 | 648 |
14 | TraesCS3B01G366800 | chr1B | 142282954 | 142283602 | 648 | False | 1005.0 | 1005 | 94.6070 | 2980 | 3628 | 1 | chr1B.!!$F1 | 648 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
35 | 36 | 0.101579 | GAGTAAGACGCAGAGCTCCC | 59.898 | 60.0 | 10.93 | 0.43 | 0.00 | 4.30 | F |
38 | 39 | 0.257905 | TAAGACGCAGAGCTCCCCTA | 59.742 | 55.0 | 10.93 | 0.00 | 0.00 | 3.53 | F |
39 | 40 | 0.397816 | AAGACGCAGAGCTCCCCTAT | 60.398 | 55.0 | 10.93 | 0.00 | 0.00 | 2.57 | F |
653 | 1136 | 0.536460 | GTCACCGTGTTGGACCCAAT | 60.536 | 55.0 | 4.63 | 0.00 | 42.00 | 3.16 | F |
785 | 1286 | 0.737715 | GAGAAATGCAGGTCTCGCGT | 60.738 | 55.0 | 5.77 | 0.00 | 31.55 | 6.01 | F |
2094 | 2985 | 0.036164 | TGTCAATGGTGAACTCCCGG | 59.964 | 55.0 | 0.00 | 0.00 | 34.87 | 5.73 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1577 | 2297 | 0.612732 | TCGTACAGTGGTAGGGTGGG | 60.613 | 60.000 | 0.00 | 0.0 | 36.33 | 4.61 | R |
1891 | 2755 | 1.079819 | GTACTCCTTGAGCAGCGCA | 60.080 | 57.895 | 11.47 | 0.0 | 32.04 | 6.09 | R |
2058 | 2925 | 8.105829 | ACCATTGACAAGACAGAGAATTAAGAT | 58.894 | 33.333 | 0.00 | 0.0 | 0.00 | 2.40 | R |
2095 | 2986 | 0.323633 | CCCATGCACCAGTCCATCAA | 60.324 | 55.000 | 0.00 | 0.0 | 0.00 | 2.57 | R |
2096 | 2987 | 1.303948 | CCCATGCACCAGTCCATCA | 59.696 | 57.895 | 0.00 | 0.0 | 0.00 | 3.07 | R |
2965 | 3899 | 0.108756 | GCACTAGGGTGAAGACGTCC | 60.109 | 60.000 | 13.01 | 0.0 | 45.61 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 8.380743 | AGTAGTCCATATGTAAGAGTAAGACG | 57.619 | 38.462 | 1.24 | 0.00 | 0.00 | 4.18 |
26 | 27 | 6.074544 | AGTCCATATGTAAGAGTAAGACGC | 57.925 | 41.667 | 1.24 | 0.00 | 0.00 | 5.19 |
27 | 28 | 5.593095 | AGTCCATATGTAAGAGTAAGACGCA | 59.407 | 40.000 | 1.24 | 0.00 | 0.00 | 5.24 |
28 | 29 | 5.915758 | GTCCATATGTAAGAGTAAGACGCAG | 59.084 | 44.000 | 1.24 | 0.00 | 0.00 | 5.18 |
29 | 30 | 5.826208 | TCCATATGTAAGAGTAAGACGCAGA | 59.174 | 40.000 | 1.24 | 0.00 | 0.00 | 4.26 |
30 | 31 | 6.017026 | TCCATATGTAAGAGTAAGACGCAGAG | 60.017 | 42.308 | 1.24 | 0.00 | 0.00 | 3.35 |
31 | 32 | 3.489180 | TGTAAGAGTAAGACGCAGAGC | 57.511 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
32 | 33 | 3.082548 | TGTAAGAGTAAGACGCAGAGCT | 58.917 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
33 | 34 | 2.931512 | AAGAGTAAGACGCAGAGCTC | 57.068 | 50.000 | 5.27 | 5.27 | 0.00 | 4.09 |
34 | 35 | 1.099689 | AGAGTAAGACGCAGAGCTCC | 58.900 | 55.000 | 10.93 | 0.00 | 0.00 | 4.70 |
35 | 36 | 0.101579 | GAGTAAGACGCAGAGCTCCC | 59.898 | 60.000 | 10.93 | 0.43 | 0.00 | 4.30 |
36 | 37 | 1.142097 | GTAAGACGCAGAGCTCCCC | 59.858 | 63.158 | 10.93 | 0.02 | 0.00 | 4.81 |
37 | 38 | 1.000486 | TAAGACGCAGAGCTCCCCT | 60.000 | 57.895 | 10.93 | 0.00 | 0.00 | 4.79 |
38 | 39 | 0.257905 | TAAGACGCAGAGCTCCCCTA | 59.742 | 55.000 | 10.93 | 0.00 | 0.00 | 3.53 |
39 | 40 | 0.397816 | AAGACGCAGAGCTCCCCTAT | 60.398 | 55.000 | 10.93 | 0.00 | 0.00 | 2.57 |
40 | 41 | 0.825840 | AGACGCAGAGCTCCCCTATC | 60.826 | 60.000 | 10.93 | 2.25 | 0.00 | 2.08 |
41 | 42 | 1.075970 | ACGCAGAGCTCCCCTATCA | 60.076 | 57.895 | 10.93 | 0.00 | 0.00 | 2.15 |
42 | 43 | 0.687757 | ACGCAGAGCTCCCCTATCAA | 60.688 | 55.000 | 10.93 | 0.00 | 0.00 | 2.57 |
43 | 44 | 0.683973 | CGCAGAGCTCCCCTATCAAT | 59.316 | 55.000 | 10.93 | 0.00 | 0.00 | 2.57 |
44 | 45 | 1.895798 | CGCAGAGCTCCCCTATCAATA | 59.104 | 52.381 | 10.93 | 0.00 | 0.00 | 1.90 |
45 | 46 | 2.094286 | CGCAGAGCTCCCCTATCAATAG | 60.094 | 54.545 | 10.93 | 0.00 | 0.00 | 1.73 |
46 | 47 | 3.169099 | GCAGAGCTCCCCTATCAATAGA | 58.831 | 50.000 | 10.93 | 0.00 | 32.05 | 1.98 |
47 | 48 | 3.580458 | GCAGAGCTCCCCTATCAATAGAA | 59.420 | 47.826 | 10.93 | 0.00 | 32.05 | 2.10 |
48 | 49 | 4.040952 | GCAGAGCTCCCCTATCAATAGAAA | 59.959 | 45.833 | 10.93 | 0.00 | 32.05 | 2.52 |
49 | 50 | 5.792741 | CAGAGCTCCCCTATCAATAGAAAG | 58.207 | 45.833 | 10.93 | 0.00 | 32.05 | 2.62 |
50 | 51 | 5.306678 | CAGAGCTCCCCTATCAATAGAAAGT | 59.693 | 44.000 | 10.93 | 0.00 | 32.05 | 2.66 |
51 | 52 | 5.306678 | AGAGCTCCCCTATCAATAGAAAGTG | 59.693 | 44.000 | 10.93 | 0.00 | 32.05 | 3.16 |
52 | 53 | 5.219739 | AGCTCCCCTATCAATAGAAAGTGA | 58.780 | 41.667 | 0.00 | 0.00 | 33.60 | 3.41 |
53 | 54 | 5.306678 | AGCTCCCCTATCAATAGAAAGTGAG | 59.693 | 44.000 | 0.00 | 0.00 | 32.39 | 3.51 |
54 | 55 | 5.512232 | GCTCCCCTATCAATAGAAAGTGAGG | 60.512 | 48.000 | 0.00 | 0.00 | 32.39 | 3.86 |
55 | 56 | 5.538877 | TCCCCTATCAATAGAAAGTGAGGT | 58.461 | 41.667 | 0.00 | 0.00 | 32.39 | 3.85 |
56 | 57 | 5.970640 | TCCCCTATCAATAGAAAGTGAGGTT | 59.029 | 40.000 | 0.00 | 0.00 | 32.39 | 3.50 |
57 | 58 | 6.058183 | CCCCTATCAATAGAAAGTGAGGTTG | 58.942 | 44.000 | 0.00 | 0.00 | 32.39 | 3.77 |
58 | 59 | 6.058183 | CCCTATCAATAGAAAGTGAGGTTGG | 58.942 | 44.000 | 0.00 | 0.00 | 32.39 | 3.77 |
59 | 60 | 5.529060 | CCTATCAATAGAAAGTGAGGTTGGC | 59.471 | 44.000 | 0.00 | 0.00 | 32.39 | 4.52 |
60 | 61 | 4.640771 | TCAATAGAAAGTGAGGTTGGCT | 57.359 | 40.909 | 0.00 | 0.00 | 0.00 | 4.75 |
61 | 62 | 5.755409 | TCAATAGAAAGTGAGGTTGGCTA | 57.245 | 39.130 | 0.00 | 0.00 | 0.00 | 3.93 |
62 | 63 | 5.488341 | TCAATAGAAAGTGAGGTTGGCTAC | 58.512 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
63 | 64 | 2.457366 | AGAAAGTGAGGTTGGCTACG | 57.543 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
64 | 65 | 1.002087 | AGAAAGTGAGGTTGGCTACGG | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
65 | 66 | 0.763035 | AAAGTGAGGTTGGCTACGGT | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
66 | 67 | 1.636148 | AAGTGAGGTTGGCTACGGTA | 58.364 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
67 | 68 | 0.893447 | AGTGAGGTTGGCTACGGTAC | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
180 | 184 | 4.017877 | GCTGCGTCACCACACTGC | 62.018 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
193 | 197 | 2.292267 | CACACTGCCCAATGATAGACC | 58.708 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
207 | 211 | 5.984695 | TGATAGACCAATTATCTCCCTCG | 57.015 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
212 | 216 | 2.158755 | ACCAATTATCTCCCTCGCTTGG | 60.159 | 50.000 | 0.00 | 0.00 | 38.08 | 3.61 |
213 | 217 | 2.104792 | CCAATTATCTCCCTCGCTTGGA | 59.895 | 50.000 | 0.00 | 0.00 | 34.88 | 3.53 |
214 | 218 | 3.433598 | CCAATTATCTCCCTCGCTTGGAA | 60.434 | 47.826 | 0.00 | 0.00 | 34.88 | 3.53 |
217 | 221 | 1.573108 | ATCTCCCTCGCTTGGAAGAA | 58.427 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
225 | 229 | 2.175236 | GCTTGGAAGAAGAAGCGGG | 58.825 | 57.895 | 0.00 | 0.00 | 35.59 | 6.13 |
228 | 232 | 0.762418 | TTGGAAGAAGAAGCGGGTGA | 59.238 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
243 | 247 | 2.814469 | CGGGTGATGCTCCTAGCTACTA | 60.814 | 54.545 | 0.03 | 0.00 | 42.97 | 1.82 |
244 | 248 | 2.823154 | GGGTGATGCTCCTAGCTACTAG | 59.177 | 54.545 | 0.03 | 0.00 | 42.97 | 2.57 |
245 | 249 | 3.492337 | GGTGATGCTCCTAGCTACTAGT | 58.508 | 50.000 | 0.00 | 0.00 | 42.97 | 2.57 |
246 | 250 | 4.506979 | GGGTGATGCTCCTAGCTACTAGTA | 60.507 | 50.000 | 1.89 | 1.89 | 42.97 | 1.82 |
248 | 252 | 4.152759 | GTGATGCTCCTAGCTACTAGTACG | 59.847 | 50.000 | 0.00 | 0.00 | 42.97 | 3.67 |
249 | 253 | 3.834489 | TGCTCCTAGCTACTAGTACGT | 57.166 | 47.619 | 0.00 | 0.00 | 42.97 | 3.57 |
250 | 254 | 4.944619 | TGCTCCTAGCTACTAGTACGTA | 57.055 | 45.455 | 0.00 | 0.00 | 42.97 | 3.57 |
252 | 256 | 4.343526 | TGCTCCTAGCTACTAGTACGTACT | 59.656 | 45.833 | 29.62 | 29.62 | 42.97 | 2.73 |
425 | 891 | 2.016165 | GCCGCCTTTGTTTTCTGCG | 61.016 | 57.895 | 0.00 | 0.00 | 44.47 | 5.18 |
449 | 915 | 0.741221 | CGGCTAAGCTGAAGACCCAC | 60.741 | 60.000 | 0.56 | 0.00 | 37.02 | 4.61 |
451 | 917 | 1.443802 | GCTAAGCTGAAGACCCACAC | 58.556 | 55.000 | 0.56 | 0.00 | 0.00 | 3.82 |
457 | 923 | 2.375174 | AGCTGAAGACCCACACCAAATA | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
473 | 945 | 8.338259 | CACACCAAATATCATTAGCAAGTACTC | 58.662 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
580 | 1063 | 2.338500 | GGTCCGATTCACACTTGAGTC | 58.662 | 52.381 | 0.00 | 0.00 | 35.60 | 3.36 |
589 | 1072 | 1.605232 | CACACTTGAGTCTGCATGCAA | 59.395 | 47.619 | 22.88 | 10.06 | 0.00 | 4.08 |
646 | 1129 | 4.619227 | AGGGCGTCACCGTGTTGG | 62.619 | 66.667 | 0.00 | 0.00 | 46.41 | 3.77 |
652 | 1135 | 1.153127 | GTCACCGTGTTGGACCCAA | 60.153 | 57.895 | 0.00 | 0.00 | 42.00 | 4.12 |
653 | 1136 | 0.536460 | GTCACCGTGTTGGACCCAAT | 60.536 | 55.000 | 4.63 | 0.00 | 42.00 | 3.16 |
667 | 1168 | 3.421844 | GACCCAATCCAGTAAACAAGCT | 58.578 | 45.455 | 0.00 | 0.00 | 0.00 | 3.74 |
690 | 1191 | 2.427453 | ACTGGTGCTAATCAGTACTCCG | 59.573 | 50.000 | 0.00 | 0.00 | 41.81 | 4.63 |
714 | 1215 | 6.478673 | CGGTCTAGCATTATACATTGACACAA | 59.521 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
732 | 1233 | 6.542005 | TGACACAAGAGCACTCTTTCAAAATA | 59.458 | 34.615 | 10.19 | 0.00 | 46.95 | 1.40 |
733 | 1234 | 6.729187 | ACACAAGAGCACTCTTTCAAAATAC | 58.271 | 36.000 | 10.19 | 0.00 | 46.95 | 1.89 |
734 | 1235 | 6.318648 | ACACAAGAGCACTCTTTCAAAATACA | 59.681 | 34.615 | 10.19 | 0.00 | 46.95 | 2.29 |
735 | 1236 | 7.148086 | ACACAAGAGCACTCTTTCAAAATACAA | 60.148 | 33.333 | 10.19 | 0.00 | 46.95 | 2.41 |
736 | 1237 | 7.701924 | CACAAGAGCACTCTTTCAAAATACAAA | 59.298 | 33.333 | 10.19 | 0.00 | 46.95 | 2.83 |
737 | 1238 | 8.416329 | ACAAGAGCACTCTTTCAAAATACAAAT | 58.584 | 29.630 | 10.19 | 0.00 | 46.95 | 2.32 |
738 | 1239 | 9.897744 | CAAGAGCACTCTTTCAAAATACAAATA | 57.102 | 29.630 | 10.19 | 0.00 | 46.95 | 1.40 |
739 | 1240 | 9.899226 | AAGAGCACTCTTTCAAAATACAAATAC | 57.101 | 29.630 | 7.10 | 0.00 | 46.95 | 1.89 |
750 | 1251 | 8.425577 | TCAAAATACAAATACTAGCTGAGAGC | 57.574 | 34.615 | 0.00 | 0.00 | 42.84 | 4.09 |
781 | 1282 | 2.094494 | TGACTCGAGAAATGCAGGTCTC | 60.094 | 50.000 | 21.68 | 16.09 | 37.51 | 3.36 |
784 | 1285 | 2.002127 | GAGAAATGCAGGTCTCGCG | 58.998 | 57.895 | 12.29 | 0.00 | 31.55 | 5.87 |
785 | 1286 | 0.737715 | GAGAAATGCAGGTCTCGCGT | 60.738 | 55.000 | 5.77 | 0.00 | 31.55 | 6.01 |
789 | 1290 | 1.320344 | AATGCAGGTCTCGCGTCCTA | 61.320 | 55.000 | 16.49 | 6.39 | 32.26 | 2.94 |
799 | 1300 | 1.009900 | CGCGTCCTACTTCCTAGCG | 60.010 | 63.158 | 0.00 | 0.00 | 40.14 | 4.26 |
800 | 1301 | 1.712977 | CGCGTCCTACTTCCTAGCGT | 61.713 | 60.000 | 0.00 | 0.00 | 41.04 | 5.07 |
801 | 1302 | 1.303309 | GCGTCCTACTTCCTAGCGTA | 58.697 | 55.000 | 0.00 | 0.00 | 0.00 | 4.42 |
843 | 1349 | 4.045104 | CAGGTTTAGATGCTGCTACGTAG | 58.955 | 47.826 | 18.47 | 18.47 | 0.00 | 3.51 |
865 | 1375 | 1.001293 | CCAGCTCAGTGTTGTAGCTCA | 59.999 | 52.381 | 1.23 | 0.00 | 44.58 | 4.26 |
935 | 1459 | 2.132740 | GCAGAAGACAGAGGCGATAG | 57.867 | 55.000 | 0.00 | 0.00 | 0.00 | 2.08 |
937 | 1461 | 2.159170 | GCAGAAGACAGAGGCGATAGTT | 60.159 | 50.000 | 0.00 | 0.00 | 39.35 | 2.24 |
971 | 1499 | 2.740981 | CTGACCACACTTTGATCTCTGC | 59.259 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
997 | 1546 | 3.292500 | CTGACAGAGCTCGCTGCCA | 62.293 | 63.158 | 8.37 | 0.00 | 44.23 | 4.92 |
998 | 1547 | 2.047844 | GACAGAGCTCGCTGCCAA | 60.048 | 61.111 | 8.37 | 0.00 | 44.23 | 4.52 |
1210 | 1773 | 4.725790 | AAAACTTGTTCTGCTTGAGCTT | 57.274 | 36.364 | 4.44 | 0.00 | 42.66 | 3.74 |
1211 | 1774 | 5.835113 | AAAACTTGTTCTGCTTGAGCTTA | 57.165 | 34.783 | 4.44 | 0.00 | 42.66 | 3.09 |
1212 | 1775 | 5.429957 | AAACTTGTTCTGCTTGAGCTTAG | 57.570 | 39.130 | 4.44 | 0.00 | 42.66 | 2.18 |
1246 | 1812 | 6.841443 | AGCAAGAGAATCATGTAAGAATCG | 57.159 | 37.500 | 0.00 | 0.00 | 35.96 | 3.34 |
1248 | 1814 | 5.559799 | GCAAGAGAATCATGTAAGAATCGGC | 60.560 | 44.000 | 0.00 | 0.00 | 35.96 | 5.54 |
1334 | 1921 | 6.655930 | TCTTTGCCTTAATCGGGTAAGTAAT | 58.344 | 36.000 | 5.63 | 0.00 | 30.75 | 1.89 |
1424 | 2144 | 2.158900 | ACCGGTGATGAATGACTGATCC | 60.159 | 50.000 | 6.12 | 0.00 | 0.00 | 3.36 |
1430 | 2150 | 5.220989 | GGTGATGAATGACTGATCCATGTTG | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1439 | 2159 | 6.057533 | TGACTGATCCATGTTGATATGGTTC | 58.942 | 40.000 | 6.65 | 8.28 | 46.23 | 3.62 |
1449 | 2169 | 9.183439 | CCATGTTGATATGGTTCTGTTTGCAGA | 62.183 | 40.741 | 0.00 | 0.00 | 43.92 | 4.26 |
1561 | 2281 | 2.234908 | ACCTTCTTCATAGCGCTTCTGT | 59.765 | 45.455 | 18.68 | 0.00 | 0.00 | 3.41 |
1575 | 2295 | 3.791887 | CGCTTCTGTTGAGGTACTAATCG | 59.208 | 47.826 | 0.00 | 0.00 | 41.55 | 3.34 |
1577 | 2297 | 4.799428 | GCTTCTGTTGAGGTACTAATCGAC | 59.201 | 45.833 | 0.00 | 0.20 | 41.55 | 4.20 |
1752 | 2616 | 2.053865 | CCTTCTACGTGGGGCCGTA | 61.054 | 63.158 | 0.00 | 0.00 | 42.00 | 4.02 |
1891 | 2755 | 2.685017 | TGGATCGTCCTGCAGGCT | 60.685 | 61.111 | 28.91 | 12.12 | 37.46 | 4.58 |
1933 | 2797 | 4.299547 | AAGCTGCTCGTCACGGCA | 62.300 | 61.111 | 12.00 | 12.00 | 42.07 | 5.69 |
2087 | 2978 | 4.687901 | TCTCTGTCTTGTCAATGGTGAA | 57.312 | 40.909 | 0.00 | 0.00 | 34.87 | 3.18 |
2088 | 2979 | 4.380531 | TCTCTGTCTTGTCAATGGTGAAC | 58.619 | 43.478 | 0.00 | 0.00 | 34.87 | 3.18 |
2089 | 2980 | 4.101585 | TCTCTGTCTTGTCAATGGTGAACT | 59.898 | 41.667 | 0.00 | 0.00 | 34.87 | 3.01 |
2090 | 2981 | 4.380531 | TCTGTCTTGTCAATGGTGAACTC | 58.619 | 43.478 | 0.00 | 0.00 | 34.87 | 3.01 |
2091 | 2982 | 3.476552 | TGTCTTGTCAATGGTGAACTCC | 58.523 | 45.455 | 0.00 | 0.00 | 34.87 | 3.85 |
2092 | 2983 | 2.814336 | GTCTTGTCAATGGTGAACTCCC | 59.186 | 50.000 | 0.00 | 0.00 | 34.87 | 4.30 |
2093 | 2984 | 1.806542 | CTTGTCAATGGTGAACTCCCG | 59.193 | 52.381 | 0.00 | 0.00 | 34.87 | 5.14 |
2094 | 2985 | 0.036164 | TGTCAATGGTGAACTCCCGG | 59.964 | 55.000 | 0.00 | 0.00 | 34.87 | 5.73 |
2095 | 2986 | 0.036306 | GTCAATGGTGAACTCCCGGT | 59.964 | 55.000 | 0.00 | 0.00 | 34.87 | 5.28 |
2096 | 2987 | 0.768622 | TCAATGGTGAACTCCCGGTT | 59.231 | 50.000 | 0.00 | 0.00 | 41.40 | 4.44 |
2097 | 2988 | 0.881118 | CAATGGTGAACTCCCGGTTG | 59.119 | 55.000 | 0.00 | 0.00 | 38.41 | 3.77 |
2098 | 2989 | 0.768622 | AATGGTGAACTCCCGGTTGA | 59.231 | 50.000 | 0.00 | 0.00 | 38.41 | 3.18 |
2103 | 2994 | 0.323629 | TGAACTCCCGGTTGATGGAC | 59.676 | 55.000 | 0.00 | 0.00 | 38.41 | 4.02 |
2240 | 3134 | 3.626924 | GTGTGGACCCCGCTCTGT | 61.627 | 66.667 | 0.00 | 0.00 | 34.70 | 3.41 |
2315 | 3209 | 2.738643 | CGGCAGGTACGATCAACTTCAT | 60.739 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2316 | 3210 | 3.270877 | GGCAGGTACGATCAACTTCATT | 58.729 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2317 | 3211 | 3.309954 | GGCAGGTACGATCAACTTCATTC | 59.690 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
2319 | 3213 | 4.759782 | CAGGTACGATCAACTTCATTCCT | 58.240 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2320 | 3214 | 5.178797 | CAGGTACGATCAACTTCATTCCTT | 58.821 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
2323 | 3217 | 5.875359 | GGTACGATCAACTTCATTCCTTCTT | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2336 | 3230 | 5.474876 | TCATTCCTTCTTCTTTCAAGCTTCC | 59.525 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2509 | 3411 | 1.618861 | GGCGAGACGAATATGATCCG | 58.381 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2557 | 3462 | 4.952957 | AGATGATGAGGAGAAGAACGAGAA | 59.047 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
2642 | 3547 | 8.553459 | AACAAGTCTGATTTGATCGAGTAAAT | 57.447 | 30.769 | 18.21 | 8.81 | 0.00 | 1.40 |
2690 | 3607 | 4.437794 | GCATCGAGCAAATGTGAATTCTGA | 60.438 | 41.667 | 7.05 | 0.00 | 44.79 | 3.27 |
2692 | 3609 | 5.885230 | TCGAGCAAATGTGAATTCTGATT | 57.115 | 34.783 | 7.05 | 2.15 | 0.00 | 2.57 |
2694 | 3611 | 7.008440 | TCGAGCAAATGTGAATTCTGATTAG | 57.992 | 36.000 | 7.05 | 0.00 | 0.00 | 1.73 |
2695 | 3612 | 6.818142 | TCGAGCAAATGTGAATTCTGATTAGA | 59.182 | 34.615 | 7.05 | 0.00 | 0.00 | 2.10 |
2699 | 3616 | 8.195436 | AGCAAATGTGAATTCTGATTAGATTGG | 58.805 | 33.333 | 7.05 | 0.00 | 31.81 | 3.16 |
2700 | 3617 | 7.437267 | GCAAATGTGAATTCTGATTAGATTGGG | 59.563 | 37.037 | 7.05 | 0.00 | 31.81 | 4.12 |
2701 | 3618 | 7.592885 | AATGTGAATTCTGATTAGATTGGGG | 57.407 | 36.000 | 7.05 | 0.00 | 31.81 | 4.96 |
2702 | 3619 | 6.325993 | TGTGAATTCTGATTAGATTGGGGA | 57.674 | 37.500 | 7.05 | 0.00 | 31.81 | 4.81 |
2710 | 3641 | 8.434589 | TTCTGATTAGATTGGGGAACAAAAAT | 57.565 | 30.769 | 0.00 | 0.00 | 43.46 | 1.82 |
2717 | 3648 | 1.150135 | TGGGGAACAAAAATGGCCCTA | 59.850 | 47.619 | 0.00 | 0.00 | 38.84 | 3.53 |
2729 | 3660 | 7.992608 | ACAAAAATGGCCCTAATTGGATTTATC | 59.007 | 33.333 | 0.00 | 0.00 | 38.35 | 1.75 |
2799 | 3733 | 7.946219 | TCCTGATCACCTCAAATTGCATATTAT | 59.054 | 33.333 | 0.00 | 0.00 | 32.14 | 1.28 |
2800 | 3734 | 8.027189 | CCTGATCACCTCAAATTGCATATTATG | 58.973 | 37.037 | 0.00 | 0.00 | 32.14 | 1.90 |
2801 | 3735 | 8.467963 | TGATCACCTCAAATTGCATATTATGT | 57.532 | 30.769 | 5.60 | 0.00 | 0.00 | 2.29 |
2805 | 3739 | 9.407380 | TCACCTCAAATTGCATATTATGTTACT | 57.593 | 29.630 | 5.60 | 0.00 | 0.00 | 2.24 |
2815 | 3749 | 9.839817 | TTGCATATTATGTTACTAAGCCTTACA | 57.160 | 29.630 | 5.60 | 0.00 | 0.00 | 2.41 |
2816 | 3750 | 9.839817 | TGCATATTATGTTACTAAGCCTTACAA | 57.160 | 29.630 | 5.60 | 0.00 | 0.00 | 2.41 |
2820 | 3754 | 8.746052 | ATTATGTTACTAAGCCTTACAATGCA | 57.254 | 30.769 | 0.00 | 0.00 | 0.00 | 3.96 |
2821 | 3755 | 8.568676 | TTATGTTACTAAGCCTTACAATGCAA | 57.431 | 30.769 | 0.00 | 0.00 | 0.00 | 4.08 |
2822 | 3756 | 6.885952 | TGTTACTAAGCCTTACAATGCAAA | 57.114 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2823 | 3757 | 6.908825 | TGTTACTAAGCCTTACAATGCAAAG | 58.091 | 36.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2824 | 3758 | 6.488683 | TGTTACTAAGCCTTACAATGCAAAGT | 59.511 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
2825 | 3759 | 7.013846 | TGTTACTAAGCCTTACAATGCAAAGTT | 59.986 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2826 | 3760 | 6.405278 | ACTAAGCCTTACAATGCAAAGTTT | 57.595 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2827 | 3761 | 6.215845 | ACTAAGCCTTACAATGCAAAGTTTG | 58.784 | 36.000 | 11.41 | 11.41 | 0.00 | 2.93 |
2828 | 3762 | 4.935352 | AGCCTTACAATGCAAAGTTTGA | 57.065 | 36.364 | 19.82 | 5.11 | 0.00 | 2.69 |
2829 | 3763 | 5.275067 | AGCCTTACAATGCAAAGTTTGAA | 57.725 | 34.783 | 19.82 | 9.56 | 0.00 | 2.69 |
2830 | 3764 | 5.291971 | AGCCTTACAATGCAAAGTTTGAAG | 58.708 | 37.500 | 19.82 | 11.70 | 0.00 | 3.02 |
2831 | 3765 | 4.084380 | GCCTTACAATGCAAAGTTTGAAGC | 60.084 | 41.667 | 19.82 | 4.63 | 0.00 | 3.86 |
2832 | 3766 | 4.448732 | CCTTACAATGCAAAGTTTGAAGCC | 59.551 | 41.667 | 19.82 | 2.02 | 0.00 | 4.35 |
2833 | 3767 | 3.825143 | ACAATGCAAAGTTTGAAGCCT | 57.175 | 38.095 | 19.82 | 0.00 | 0.00 | 4.58 |
2834 | 3768 | 4.141233 | ACAATGCAAAGTTTGAAGCCTT | 57.859 | 36.364 | 19.82 | 0.00 | 0.00 | 4.35 |
2835 | 3769 | 4.122046 | ACAATGCAAAGTTTGAAGCCTTC | 58.878 | 39.130 | 19.82 | 0.00 | 0.00 | 3.46 |
2836 | 3770 | 2.888834 | TGCAAAGTTTGAAGCCTTCC | 57.111 | 45.000 | 19.82 | 0.00 | 0.00 | 3.46 |
2837 | 3771 | 2.387757 | TGCAAAGTTTGAAGCCTTCCT | 58.612 | 42.857 | 19.82 | 0.00 | 0.00 | 3.36 |
2838 | 3772 | 2.362077 | TGCAAAGTTTGAAGCCTTCCTC | 59.638 | 45.455 | 19.82 | 0.00 | 0.00 | 3.71 |
2839 | 3773 | 2.288457 | GCAAAGTTTGAAGCCTTCCTCC | 60.288 | 50.000 | 19.82 | 0.00 | 0.00 | 4.30 |
2840 | 3774 | 1.897560 | AAGTTTGAAGCCTTCCTCCG | 58.102 | 50.000 | 1.21 | 0.00 | 0.00 | 4.63 |
2841 | 3775 | 0.765510 | AGTTTGAAGCCTTCCTCCGT | 59.234 | 50.000 | 1.21 | 0.00 | 0.00 | 4.69 |
2842 | 3776 | 1.143073 | AGTTTGAAGCCTTCCTCCGTT | 59.857 | 47.619 | 1.21 | 0.00 | 0.00 | 4.44 |
2843 | 3777 | 1.954382 | GTTTGAAGCCTTCCTCCGTTT | 59.046 | 47.619 | 1.21 | 0.00 | 0.00 | 3.60 |
2844 | 3778 | 1.892209 | TTGAAGCCTTCCTCCGTTTC | 58.108 | 50.000 | 1.21 | 0.00 | 0.00 | 2.78 |
2845 | 3779 | 0.320421 | TGAAGCCTTCCTCCGTTTCG | 60.320 | 55.000 | 1.21 | 0.00 | 0.00 | 3.46 |
2846 | 3780 | 0.037605 | GAAGCCTTCCTCCGTTTCGA | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2847 | 3781 | 0.395312 | AAGCCTTCCTCCGTTTCGAA | 59.605 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2848 | 3782 | 0.395312 | AGCCTTCCTCCGTTTCGAAA | 59.605 | 50.000 | 6.47 | 6.47 | 0.00 | 3.46 |
2849 | 3783 | 1.202722 | AGCCTTCCTCCGTTTCGAAAA | 60.203 | 47.619 | 13.10 | 0.00 | 0.00 | 2.29 |
2850 | 3784 | 1.605232 | GCCTTCCTCCGTTTCGAAAAA | 59.395 | 47.619 | 13.10 | 1.11 | 0.00 | 1.94 |
2885 | 3819 | 5.412904 | AGCCTTACACTGTAATCTTTGAAGC | 59.587 | 40.000 | 2.02 | 0.00 | 0.00 | 3.86 |
2886 | 3820 | 5.412904 | GCCTTACACTGTAATCTTTGAAGCT | 59.587 | 40.000 | 2.02 | 0.00 | 0.00 | 3.74 |
2887 | 3821 | 6.621596 | GCCTTACACTGTAATCTTTGAAGCTG | 60.622 | 42.308 | 2.02 | 0.00 | 0.00 | 4.24 |
2888 | 3822 | 4.756084 | ACACTGTAATCTTTGAAGCTGC | 57.244 | 40.909 | 0.00 | 0.00 | 0.00 | 5.25 |
2889 | 3823 | 3.187227 | ACACTGTAATCTTTGAAGCTGCG | 59.813 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
2890 | 3824 | 2.160417 | ACTGTAATCTTTGAAGCTGCGC | 59.840 | 45.455 | 0.00 | 0.00 | 0.00 | 6.09 |
2891 | 3825 | 2.417933 | CTGTAATCTTTGAAGCTGCGCT | 59.582 | 45.455 | 9.73 | 0.00 | 42.56 | 5.92 |
2892 | 3826 | 3.595173 | TGTAATCTTTGAAGCTGCGCTA | 58.405 | 40.909 | 9.73 | 0.00 | 38.25 | 4.26 |
2893 | 3827 | 3.370978 | TGTAATCTTTGAAGCTGCGCTAC | 59.629 | 43.478 | 9.73 | 0.00 | 38.25 | 3.58 |
2894 | 3828 | 2.393271 | ATCTTTGAAGCTGCGCTACT | 57.607 | 45.000 | 9.73 | 2.28 | 38.25 | 2.57 |
2895 | 3829 | 2.169832 | TCTTTGAAGCTGCGCTACTT | 57.830 | 45.000 | 9.73 | 12.37 | 38.25 | 2.24 |
2896 | 3830 | 1.800586 | TCTTTGAAGCTGCGCTACTTG | 59.199 | 47.619 | 18.16 | 6.09 | 38.25 | 3.16 |
2897 | 3831 | 1.532868 | CTTTGAAGCTGCGCTACTTGT | 59.467 | 47.619 | 18.16 | 0.00 | 38.25 | 3.16 |
2898 | 3832 | 2.448926 | TTGAAGCTGCGCTACTTGTA | 57.551 | 45.000 | 18.16 | 6.38 | 38.25 | 2.41 |
2899 | 3833 | 1.996292 | TGAAGCTGCGCTACTTGTAG | 58.004 | 50.000 | 18.16 | 2.33 | 38.25 | 2.74 |
2900 | 3834 | 1.272490 | TGAAGCTGCGCTACTTGTAGT | 59.728 | 47.619 | 18.16 | 0.00 | 38.25 | 2.73 |
2901 | 3835 | 2.288825 | TGAAGCTGCGCTACTTGTAGTT | 60.289 | 45.455 | 18.16 | 0.00 | 38.25 | 2.24 |
2902 | 3836 | 1.997669 | AGCTGCGCTACTTGTAGTTC | 58.002 | 50.000 | 9.73 | 3.09 | 36.99 | 3.01 |
2903 | 3837 | 1.546476 | AGCTGCGCTACTTGTAGTTCT | 59.454 | 47.619 | 9.73 | 0.00 | 36.99 | 3.01 |
2904 | 3838 | 2.753452 | AGCTGCGCTACTTGTAGTTCTA | 59.247 | 45.455 | 9.73 | 0.00 | 36.99 | 2.10 |
2905 | 3839 | 2.853003 | GCTGCGCTACTTGTAGTTCTAC | 59.147 | 50.000 | 9.73 | 3.33 | 0.00 | 2.59 |
2906 | 3840 | 3.427773 | GCTGCGCTACTTGTAGTTCTACT | 60.428 | 47.826 | 9.73 | 0.00 | 0.00 | 2.57 |
2907 | 3841 | 4.734917 | CTGCGCTACTTGTAGTTCTACTT | 58.265 | 43.478 | 9.73 | 0.00 | 0.00 | 2.24 |
2908 | 3842 | 5.130292 | TGCGCTACTTGTAGTTCTACTTT | 57.870 | 39.130 | 9.73 | 0.00 | 0.00 | 2.66 |
2909 | 3843 | 5.535333 | TGCGCTACTTGTAGTTCTACTTTT | 58.465 | 37.500 | 9.73 | 0.00 | 0.00 | 2.27 |
2910 | 3844 | 6.680810 | TGCGCTACTTGTAGTTCTACTTTTA | 58.319 | 36.000 | 9.73 | 0.40 | 0.00 | 1.52 |
2911 | 3845 | 7.147312 | TGCGCTACTTGTAGTTCTACTTTTAA | 58.853 | 34.615 | 9.73 | 0.00 | 0.00 | 1.52 |
2912 | 3846 | 7.652909 | TGCGCTACTTGTAGTTCTACTTTTAAA | 59.347 | 33.333 | 9.73 | 0.00 | 0.00 | 1.52 |
2913 | 3847 | 8.490355 | GCGCTACTTGTAGTTCTACTTTTAAAA | 58.510 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2917 | 3851 | 8.687292 | ACTTGTAGTTCTACTTTTAAAAGGGG | 57.313 | 34.615 | 27.23 | 19.56 | 40.31 | 4.79 |
2918 | 3852 | 8.496916 | ACTTGTAGTTCTACTTTTAAAAGGGGA | 58.503 | 33.333 | 27.23 | 21.12 | 40.31 | 4.81 |
2919 | 3853 | 8.913487 | TTGTAGTTCTACTTTTAAAAGGGGAG | 57.087 | 34.615 | 27.23 | 20.72 | 40.31 | 4.30 |
2920 | 3854 | 8.037723 | TGTAGTTCTACTTTTAAAAGGGGAGT | 57.962 | 34.615 | 27.23 | 19.25 | 40.31 | 3.85 |
2921 | 3855 | 8.152898 | TGTAGTTCTACTTTTAAAAGGGGAGTC | 58.847 | 37.037 | 27.23 | 19.11 | 40.31 | 3.36 |
2922 | 3856 | 6.540995 | AGTTCTACTTTTAAAAGGGGAGTCC | 58.459 | 40.000 | 27.23 | 16.03 | 40.31 | 3.85 |
2923 | 3857 | 6.102174 | AGTTCTACTTTTAAAAGGGGAGTCCA | 59.898 | 38.462 | 27.23 | 10.25 | 40.31 | 4.02 |
2924 | 3858 | 6.713731 | TCTACTTTTAAAAGGGGAGTCCAT | 57.286 | 37.500 | 27.23 | 9.36 | 40.31 | 3.41 |
2925 | 3859 | 7.817910 | TCTACTTTTAAAAGGGGAGTCCATA | 57.182 | 36.000 | 27.23 | 9.92 | 40.31 | 2.74 |
2926 | 3860 | 7.627311 | TCTACTTTTAAAAGGGGAGTCCATAC | 58.373 | 38.462 | 27.23 | 0.16 | 40.31 | 2.39 |
2927 | 3861 | 5.250982 | ACTTTTAAAAGGGGAGTCCATACG | 58.749 | 41.667 | 27.23 | 3.28 | 40.31 | 3.06 |
2928 | 3862 | 4.914177 | TTTAAAAGGGGAGTCCATACGT | 57.086 | 40.909 | 12.30 | 0.00 | 38.24 | 3.57 |
2929 | 3863 | 4.476628 | TTAAAAGGGGAGTCCATACGTC | 57.523 | 45.455 | 12.30 | 0.00 | 38.24 | 4.34 |
2930 | 3864 | 1.946984 | AAAGGGGAGTCCATACGTCA | 58.053 | 50.000 | 12.30 | 0.00 | 38.24 | 4.35 |
2931 | 3865 | 2.176247 | AAGGGGAGTCCATACGTCAT | 57.824 | 50.000 | 12.30 | 0.00 | 38.24 | 3.06 |
2932 | 3866 | 2.176247 | AGGGGAGTCCATACGTCATT | 57.824 | 50.000 | 12.30 | 0.00 | 38.24 | 2.57 |
2933 | 3867 | 2.478292 | AGGGGAGTCCATACGTCATTT | 58.522 | 47.619 | 12.30 | 0.00 | 38.24 | 2.32 |
2934 | 3868 | 2.844348 | AGGGGAGTCCATACGTCATTTT | 59.156 | 45.455 | 12.30 | 0.00 | 38.24 | 1.82 |
2935 | 3869 | 3.118371 | AGGGGAGTCCATACGTCATTTTC | 60.118 | 47.826 | 12.30 | 0.00 | 38.24 | 2.29 |
2936 | 3870 | 3.118371 | GGGGAGTCCATACGTCATTTTCT | 60.118 | 47.826 | 12.30 | 0.00 | 35.00 | 2.52 |
2937 | 3871 | 4.514401 | GGGAGTCCATACGTCATTTTCTT | 58.486 | 43.478 | 12.30 | 0.00 | 0.00 | 2.52 |
2938 | 3872 | 5.395990 | GGGGAGTCCATACGTCATTTTCTTA | 60.396 | 44.000 | 12.30 | 0.00 | 35.00 | 2.10 |
2939 | 3873 | 5.753921 | GGGAGTCCATACGTCATTTTCTTAG | 59.246 | 44.000 | 12.30 | 0.00 | 0.00 | 2.18 |
2940 | 3874 | 6.338937 | GGAGTCCATACGTCATTTTCTTAGT | 58.661 | 40.000 | 3.60 | 0.00 | 0.00 | 2.24 |
2941 | 3875 | 6.817140 | GGAGTCCATACGTCATTTTCTTAGTT | 59.183 | 38.462 | 3.60 | 0.00 | 0.00 | 2.24 |
2942 | 3876 | 7.010275 | GGAGTCCATACGTCATTTTCTTAGTTC | 59.990 | 40.741 | 3.60 | 0.00 | 0.00 | 3.01 |
2943 | 3877 | 6.530534 | AGTCCATACGTCATTTTCTTAGTTCG | 59.469 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
2944 | 3878 | 6.529125 | GTCCATACGTCATTTTCTTAGTTCGA | 59.471 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
2945 | 3879 | 7.222224 | GTCCATACGTCATTTTCTTAGTTCGAT | 59.778 | 37.037 | 0.00 | 0.00 | 0.00 | 3.59 |
2946 | 3880 | 7.222031 | TCCATACGTCATTTTCTTAGTTCGATG | 59.778 | 37.037 | 0.00 | 0.00 | 0.00 | 3.84 |
2947 | 3881 | 5.204673 | ACGTCATTTTCTTAGTTCGATGC | 57.795 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2948 | 3882 | 4.092968 | ACGTCATTTTCTTAGTTCGATGCC | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2949 | 3883 | 4.330074 | CGTCATTTTCTTAGTTCGATGCCT | 59.670 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
2950 | 3884 | 5.163854 | CGTCATTTTCTTAGTTCGATGCCTT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2951 | 3885 | 6.251549 | GTCATTTTCTTAGTTCGATGCCTTC | 58.748 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2952 | 3886 | 5.354234 | TCATTTTCTTAGTTCGATGCCTTCC | 59.646 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2953 | 3887 | 2.981859 | TCTTAGTTCGATGCCTTCCC | 57.018 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
2954 | 3888 | 1.136305 | TCTTAGTTCGATGCCTTCCCG | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
2955 | 3889 | 0.899720 | TTAGTTCGATGCCTTCCCGT | 59.100 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2956 | 3890 | 0.458669 | TAGTTCGATGCCTTCCCGTC | 59.541 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2957 | 3891 | 2.165301 | GTTCGATGCCTTCCCGTCG | 61.165 | 63.158 | 0.00 | 0.00 | 43.63 | 5.12 |
2959 | 3893 | 2.125326 | TCGATGCCTTCCCGTCGAT | 61.125 | 57.895 | 2.70 | 0.00 | 45.29 | 3.59 |
2960 | 3894 | 1.661821 | CGATGCCTTCCCGTCGATC | 60.662 | 63.158 | 0.00 | 0.00 | 44.71 | 3.69 |
2961 | 3895 | 1.661821 | GATGCCTTCCCGTCGATCG | 60.662 | 63.158 | 9.36 | 9.36 | 39.52 | 3.69 |
2962 | 3896 | 2.071844 | GATGCCTTCCCGTCGATCGA | 62.072 | 60.000 | 15.15 | 15.15 | 42.86 | 3.59 |
2963 | 3897 | 1.464376 | ATGCCTTCCCGTCGATCGAT | 61.464 | 55.000 | 22.50 | 0.00 | 42.86 | 3.59 |
2964 | 3898 | 0.820482 | TGCCTTCCCGTCGATCGATA | 60.820 | 55.000 | 22.50 | 4.72 | 42.86 | 2.92 |
2965 | 3899 | 0.109689 | GCCTTCCCGTCGATCGATAG | 60.110 | 60.000 | 22.50 | 17.62 | 42.86 | 2.08 |
2966 | 3900 | 0.522180 | CCTTCCCGTCGATCGATAGG | 59.478 | 60.000 | 26.16 | 26.16 | 42.86 | 2.57 |
2967 | 3901 | 1.520494 | CTTCCCGTCGATCGATAGGA | 58.480 | 55.000 | 31.37 | 28.95 | 42.86 | 2.94 |
2968 | 3902 | 1.197264 | CTTCCCGTCGATCGATAGGAC | 59.803 | 57.143 | 31.37 | 16.33 | 42.86 | 3.85 |
2971 | 3905 | 3.635588 | CGTCGATCGATAGGACGTC | 57.364 | 57.895 | 29.19 | 7.13 | 46.07 | 4.34 |
2972 | 3906 | 1.138337 | CGTCGATCGATAGGACGTCT | 58.862 | 55.000 | 29.19 | 4.12 | 46.07 | 4.18 |
2973 | 3907 | 1.526041 | CGTCGATCGATAGGACGTCTT | 59.474 | 52.381 | 29.19 | 10.98 | 46.07 | 3.01 |
2974 | 3908 | 2.410006 | CGTCGATCGATAGGACGTCTTC | 60.410 | 54.545 | 29.19 | 9.28 | 46.07 | 2.87 |
2975 | 3909 | 2.543012 | GTCGATCGATAGGACGTCTTCA | 59.457 | 50.000 | 22.50 | 0.92 | 36.70 | 3.02 |
2976 | 3910 | 2.543012 | TCGATCGATAGGACGTCTTCAC | 59.457 | 50.000 | 15.15 | 4.83 | 36.70 | 3.18 |
2977 | 3911 | 2.349627 | CGATCGATAGGACGTCTTCACC | 60.350 | 54.545 | 16.46 | 0.00 | 34.70 | 4.02 |
2978 | 3912 | 1.386533 | TCGATAGGACGTCTTCACCC | 58.613 | 55.000 | 16.46 | 0.00 | 34.70 | 4.61 |
2984 | 3918 | 0.108756 | GGACGTCTTCACCCTAGTGC | 60.109 | 60.000 | 16.46 | 0.00 | 44.16 | 4.40 |
3008 | 3942 | 3.181484 | GGGTGAGTTTGCGGTAAAGTTTT | 60.181 | 43.478 | 0.43 | 0.00 | 32.13 | 2.43 |
3019 | 3953 | 3.628487 | CGGTAAAGTTTTGGGTCAGAACA | 59.372 | 43.478 | 0.00 | 0.00 | 32.01 | 3.18 |
3201 | 4135 | 8.162245 | GGAAAAGAATAATGACAATTTTGACGC | 58.838 | 33.333 | 0.00 | 0.00 | 0.00 | 5.19 |
3277 | 4211 | 3.108376 | AGAGCTCTCGGGTAGGAAATTT | 58.892 | 45.455 | 11.45 | 0.00 | 34.09 | 1.82 |
3340 | 4274 | 1.944709 | GACCGTGTTTTGGCTAGTGTT | 59.055 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
3421 | 4355 | 1.400846 | CACACACCGCTACTAGTCGAT | 59.599 | 52.381 | 0.00 | 0.00 | 0.00 | 3.59 |
3433 | 4367 | 1.107538 | TAGTCGATTCGGGGGCTCAG | 61.108 | 60.000 | 6.18 | 0.00 | 0.00 | 3.35 |
3529 | 4463 | 3.922375 | AGCTAGAGAGTGGGCTAAAGAT | 58.078 | 45.455 | 0.00 | 0.00 | 32.94 | 2.40 |
3562 | 4496 | 2.676121 | CCCATTGAGCGGTGGCAA | 60.676 | 61.111 | 0.00 | 0.00 | 43.41 | 4.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 7.041235 | GCGTCTTACTCTTACATATGGACTACT | 60.041 | 40.741 | 7.80 | 0.00 | 0.00 | 2.57 |
1 | 2 | 7.076983 | GCGTCTTACTCTTACATATGGACTAC | 58.923 | 42.308 | 7.80 | 0.00 | 0.00 | 2.73 |
2 | 3 | 6.769341 | TGCGTCTTACTCTTACATATGGACTA | 59.231 | 38.462 | 7.80 | 0.00 | 0.00 | 2.59 |
4 | 5 | 5.828747 | TGCGTCTTACTCTTACATATGGAC | 58.171 | 41.667 | 7.80 | 0.70 | 0.00 | 4.02 |
5 | 6 | 5.826208 | TCTGCGTCTTACTCTTACATATGGA | 59.174 | 40.000 | 7.80 | 0.00 | 0.00 | 3.41 |
6 | 7 | 6.073327 | TCTGCGTCTTACTCTTACATATGG | 57.927 | 41.667 | 7.80 | 0.00 | 0.00 | 2.74 |
7 | 8 | 5.627367 | GCTCTGCGTCTTACTCTTACATATG | 59.373 | 44.000 | 0.00 | 0.00 | 0.00 | 1.78 |
8 | 9 | 5.533154 | AGCTCTGCGTCTTACTCTTACATAT | 59.467 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
9 | 10 | 4.882427 | AGCTCTGCGTCTTACTCTTACATA | 59.118 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
10 | 11 | 3.697045 | AGCTCTGCGTCTTACTCTTACAT | 59.303 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
11 | 12 | 3.082548 | AGCTCTGCGTCTTACTCTTACA | 58.917 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
12 | 13 | 3.487879 | GGAGCTCTGCGTCTTACTCTTAC | 60.488 | 52.174 | 14.64 | 0.00 | 0.00 | 2.34 |
13 | 14 | 2.683867 | GGAGCTCTGCGTCTTACTCTTA | 59.316 | 50.000 | 14.64 | 0.00 | 0.00 | 2.10 |
14 | 15 | 1.474879 | GGAGCTCTGCGTCTTACTCTT | 59.525 | 52.381 | 14.64 | 0.00 | 0.00 | 2.85 |
15 | 16 | 1.099689 | GGAGCTCTGCGTCTTACTCT | 58.900 | 55.000 | 14.64 | 0.00 | 0.00 | 3.24 |
16 | 17 | 0.101579 | GGGAGCTCTGCGTCTTACTC | 59.898 | 60.000 | 14.64 | 0.00 | 0.00 | 2.59 |
17 | 18 | 1.324005 | GGGGAGCTCTGCGTCTTACT | 61.324 | 60.000 | 14.64 | 0.00 | 0.00 | 2.24 |
18 | 19 | 1.142097 | GGGGAGCTCTGCGTCTTAC | 59.858 | 63.158 | 14.64 | 0.00 | 0.00 | 2.34 |
19 | 20 | 0.257905 | TAGGGGAGCTCTGCGTCTTA | 59.742 | 55.000 | 14.64 | 0.00 | 0.00 | 2.10 |
20 | 21 | 0.397816 | ATAGGGGAGCTCTGCGTCTT | 60.398 | 55.000 | 14.64 | 0.00 | 0.00 | 3.01 |
21 | 22 | 0.825840 | GATAGGGGAGCTCTGCGTCT | 60.826 | 60.000 | 14.64 | 6.84 | 0.00 | 4.18 |
22 | 23 | 1.109920 | TGATAGGGGAGCTCTGCGTC | 61.110 | 60.000 | 14.64 | 6.69 | 0.00 | 5.19 |
23 | 24 | 0.687757 | TTGATAGGGGAGCTCTGCGT | 60.688 | 55.000 | 14.64 | 0.00 | 0.00 | 5.24 |
24 | 25 | 0.683973 | ATTGATAGGGGAGCTCTGCG | 59.316 | 55.000 | 14.64 | 0.00 | 0.00 | 5.18 |
25 | 26 | 3.169099 | TCTATTGATAGGGGAGCTCTGC | 58.831 | 50.000 | 14.64 | 0.00 | 0.00 | 4.26 |
26 | 27 | 5.306678 | ACTTTCTATTGATAGGGGAGCTCTG | 59.693 | 44.000 | 14.64 | 0.00 | 0.00 | 3.35 |
27 | 28 | 5.306678 | CACTTTCTATTGATAGGGGAGCTCT | 59.693 | 44.000 | 14.64 | 0.00 | 0.00 | 4.09 |
28 | 29 | 5.305644 | TCACTTTCTATTGATAGGGGAGCTC | 59.694 | 44.000 | 4.71 | 4.71 | 0.00 | 4.09 |
29 | 30 | 5.219739 | TCACTTTCTATTGATAGGGGAGCT | 58.780 | 41.667 | 0.00 | 0.00 | 0.00 | 4.09 |
30 | 31 | 5.512232 | CCTCACTTTCTATTGATAGGGGAGC | 60.512 | 48.000 | 10.46 | 0.00 | 31.88 | 4.70 |
31 | 32 | 5.604650 | ACCTCACTTTCTATTGATAGGGGAG | 59.395 | 44.000 | 9.59 | 9.59 | 32.41 | 4.30 |
32 | 33 | 5.538877 | ACCTCACTTTCTATTGATAGGGGA | 58.461 | 41.667 | 0.00 | 0.00 | 0.00 | 4.81 |
33 | 34 | 5.896073 | ACCTCACTTTCTATTGATAGGGG | 57.104 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
34 | 35 | 6.058183 | CCAACCTCACTTTCTATTGATAGGG | 58.942 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
35 | 36 | 5.529060 | GCCAACCTCACTTTCTATTGATAGG | 59.471 | 44.000 | 0.46 | 0.00 | 0.00 | 2.57 |
36 | 37 | 6.352516 | AGCCAACCTCACTTTCTATTGATAG | 58.647 | 40.000 | 0.00 | 0.00 | 0.00 | 2.08 |
37 | 38 | 6.313519 | AGCCAACCTCACTTTCTATTGATA | 57.686 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
38 | 39 | 5.184892 | AGCCAACCTCACTTTCTATTGAT | 57.815 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
39 | 40 | 4.640771 | AGCCAACCTCACTTTCTATTGA | 57.359 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
40 | 41 | 4.330074 | CGTAGCCAACCTCACTTTCTATTG | 59.670 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
41 | 42 | 4.504858 | CGTAGCCAACCTCACTTTCTATT | 58.495 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
42 | 43 | 3.118738 | CCGTAGCCAACCTCACTTTCTAT | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
43 | 44 | 2.232941 | CCGTAGCCAACCTCACTTTCTA | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
44 | 45 | 1.002087 | CCGTAGCCAACCTCACTTTCT | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
45 | 46 | 1.270678 | ACCGTAGCCAACCTCACTTTC | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
46 | 47 | 0.763035 | ACCGTAGCCAACCTCACTTT | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
47 | 48 | 1.274447 | GTACCGTAGCCAACCTCACTT | 59.726 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
48 | 49 | 0.893447 | GTACCGTAGCCAACCTCACT | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
49 | 50 | 0.893447 | AGTACCGTAGCCAACCTCAC | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
50 | 51 | 0.892755 | CAGTACCGTAGCCAACCTCA | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
51 | 52 | 1.134560 | CTCAGTACCGTAGCCAACCTC | 59.865 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
52 | 53 | 1.183549 | CTCAGTACCGTAGCCAACCT | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
53 | 54 | 1.180029 | TCTCAGTACCGTAGCCAACC | 58.820 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
54 | 55 | 2.426024 | TCATCTCAGTACCGTAGCCAAC | 59.574 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
55 | 56 | 2.730382 | TCATCTCAGTACCGTAGCCAA | 58.270 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
56 | 57 | 2.430248 | TCATCTCAGTACCGTAGCCA | 57.570 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
57 | 58 | 5.449107 | TTTATCATCTCAGTACCGTAGCC | 57.551 | 43.478 | 0.00 | 0.00 | 0.00 | 3.93 |
82 | 83 | 2.171448 | ACTGGCTCTCTTTTGTCACACT | 59.829 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
83 | 84 | 2.565841 | ACTGGCTCTCTTTTGTCACAC | 58.434 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
84 | 85 | 2.945008 | CAACTGGCTCTCTTTTGTCACA | 59.055 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
85 | 86 | 3.206150 | TCAACTGGCTCTCTTTTGTCAC | 58.794 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
143 | 147 | 2.223203 | GCATGCACTATCACTGAACAGC | 60.223 | 50.000 | 14.21 | 0.00 | 0.00 | 4.40 |
180 | 184 | 6.012157 | AGGGAGATAATTGGTCTATCATTGGG | 60.012 | 42.308 | 0.00 | 0.00 | 0.00 | 4.12 |
193 | 197 | 3.475566 | TCCAAGCGAGGGAGATAATTG | 57.524 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
207 | 211 | 0.606673 | ACCCGCTTCTTCTTCCAAGC | 60.607 | 55.000 | 0.00 | 0.00 | 41.46 | 4.01 |
212 | 216 | 0.729690 | GCATCACCCGCTTCTTCTTC | 59.270 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
213 | 217 | 0.326264 | AGCATCACCCGCTTCTTCTT | 59.674 | 50.000 | 0.00 | 0.00 | 35.82 | 2.52 |
214 | 218 | 0.107945 | GAGCATCACCCGCTTCTTCT | 60.108 | 55.000 | 0.00 | 0.00 | 40.63 | 2.85 |
217 | 221 | 1.992277 | AGGAGCATCACCCGCTTCT | 60.992 | 57.895 | 0.00 | 0.00 | 40.68 | 2.85 |
225 | 229 | 4.152759 | CGTACTAGTAGCTAGGAGCATCAC | 59.847 | 50.000 | 1.87 | 0.00 | 45.56 | 3.06 |
228 | 232 | 4.354893 | ACGTACTAGTAGCTAGGAGCAT | 57.645 | 45.455 | 1.87 | 0.00 | 45.56 | 3.79 |
243 | 247 | 5.219343 | AGGCCTTTGTTTAAGTACGTACT | 57.781 | 39.130 | 22.45 | 22.45 | 38.39 | 2.73 |
244 | 248 | 7.331687 | TGATTAGGCCTTTGTTTAAGTACGTAC | 59.668 | 37.037 | 12.58 | 18.10 | 31.56 | 3.67 |
245 | 249 | 7.385267 | TGATTAGGCCTTTGTTTAAGTACGTA | 58.615 | 34.615 | 12.58 | 0.00 | 31.56 | 3.57 |
246 | 250 | 6.232692 | TGATTAGGCCTTTGTTTAAGTACGT | 58.767 | 36.000 | 12.58 | 0.00 | 31.56 | 3.57 |
248 | 252 | 6.552629 | GCTGATTAGGCCTTTGTTTAAGTAC | 58.447 | 40.000 | 12.58 | 0.00 | 31.56 | 2.73 |
249 | 253 | 5.353123 | CGCTGATTAGGCCTTTGTTTAAGTA | 59.647 | 40.000 | 12.58 | 0.00 | 31.56 | 2.24 |
250 | 254 | 4.156008 | CGCTGATTAGGCCTTTGTTTAAGT | 59.844 | 41.667 | 12.58 | 0.00 | 31.56 | 2.24 |
252 | 256 | 3.442273 | CCGCTGATTAGGCCTTTGTTTAA | 59.558 | 43.478 | 12.58 | 0.00 | 0.00 | 1.52 |
285 | 751 | 2.122783 | TAATTAGTGTGGTGCCTGGC | 57.877 | 50.000 | 12.87 | 12.87 | 0.00 | 4.85 |
286 | 752 | 2.358898 | GCATAATTAGTGTGGTGCCTGG | 59.641 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
287 | 753 | 3.282021 | AGCATAATTAGTGTGGTGCCTG | 58.718 | 45.455 | 3.46 | 0.00 | 33.29 | 4.85 |
288 | 754 | 3.652057 | AGCATAATTAGTGTGGTGCCT | 57.348 | 42.857 | 3.46 | 0.00 | 33.29 | 4.75 |
289 | 755 | 5.123227 | TCTAAGCATAATTAGTGTGGTGCC | 58.877 | 41.667 | 3.46 | 0.00 | 34.87 | 5.01 |
290 | 756 | 6.677781 | TTCTAAGCATAATTAGTGTGGTGC | 57.322 | 37.500 | 0.00 | 0.00 | 34.87 | 5.01 |
291 | 757 | 8.492673 | TCTTTCTAAGCATAATTAGTGTGGTG | 57.507 | 34.615 | 0.00 | 0.00 | 34.87 | 4.17 |
292 | 758 | 9.331282 | GATCTTTCTAAGCATAATTAGTGTGGT | 57.669 | 33.333 | 0.00 | 0.00 | 34.87 | 4.16 |
348 | 814 | 3.806625 | ACAATTCCTTATGCCACATGC | 57.193 | 42.857 | 0.00 | 0.00 | 41.77 | 4.06 |
382 | 848 | 2.234908 | GTGAGTGGCCAGTCAAGTCTAT | 59.765 | 50.000 | 38.66 | 1.47 | 41.91 | 1.98 |
408 | 874 | 4.226803 | CGCAGAAAACAAAGGCGG | 57.773 | 55.556 | 0.00 | 0.00 | 43.63 | 6.13 |
425 | 891 | 1.153349 | CTTCAGCTTAGCCGTCCCC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
449 | 915 | 7.716998 | AGGAGTACTTGCTAATGATATTTGGTG | 59.283 | 37.037 | 0.00 | 0.00 | 0.00 | 4.17 |
451 | 917 | 7.389053 | GGAGGAGTACTTGCTAATGATATTTGG | 59.611 | 40.741 | 0.00 | 0.00 | 0.00 | 3.28 |
457 | 923 | 7.863901 | ATTAGGAGGAGTACTTGCTAATGAT | 57.136 | 36.000 | 16.28 | 0.00 | 41.98 | 2.45 |
473 | 945 | 1.766496 | TCCCCGCTGTTAATTAGGAGG | 59.234 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
565 | 1048 | 3.425892 | GCATGCAGACTCAAGTGTGAATC | 60.426 | 47.826 | 14.21 | 0.00 | 41.29 | 2.52 |
580 | 1063 | 1.472026 | GGTTTATGGGCTTGCATGCAG | 60.472 | 52.381 | 21.50 | 15.64 | 34.04 | 4.41 |
646 | 1129 | 3.421844 | AGCTTGTTTACTGGATTGGGTC | 58.578 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
667 | 1168 | 4.097437 | CGGAGTACTGATTAGCACCAGTAA | 59.903 | 45.833 | 0.00 | 0.00 | 44.50 | 2.24 |
690 | 1191 | 7.710907 | TCTTGTGTCAATGTATAATGCTAGACC | 59.289 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
714 | 1215 | 9.289782 | AGTATTTGTATTTTGAAAGAGTGCTCT | 57.710 | 29.630 | 0.00 | 0.00 | 42.75 | 4.09 |
750 | 1251 | 5.918011 | GCATTTCTCGAGTCAATAGGAGTAG | 59.082 | 44.000 | 13.13 | 0.76 | 0.00 | 2.57 |
758 | 1259 | 3.055530 | AGACCTGCATTTCTCGAGTCAAT | 60.056 | 43.478 | 13.13 | 9.34 | 0.00 | 2.57 |
781 | 1282 | 1.009900 | CGCTAGGAAGTAGGACGCG | 60.010 | 63.158 | 3.53 | 3.53 | 0.00 | 6.01 |
782 | 1283 | 1.303309 | TACGCTAGGAAGTAGGACGC | 58.697 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
783 | 1284 | 5.008019 | TGTTTATACGCTAGGAAGTAGGACG | 59.992 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
784 | 1285 | 6.382869 | TGTTTATACGCTAGGAAGTAGGAC | 57.617 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
785 | 1286 | 6.460676 | GCTTGTTTATACGCTAGGAAGTAGGA | 60.461 | 42.308 | 0.00 | 0.00 | 0.00 | 2.94 |
789 | 1290 | 4.081309 | TGGCTTGTTTATACGCTAGGAAGT | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
799 | 1300 | 8.088365 | ACCTGATTTTCTTTGGCTTGTTTATAC | 58.912 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
800 | 1301 | 8.189119 | ACCTGATTTTCTTTGGCTTGTTTATA | 57.811 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
801 | 1302 | 7.066307 | ACCTGATTTTCTTTGGCTTGTTTAT | 57.934 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
843 | 1349 | 1.001406 | AGCTACAACACTGAGCTGGAC | 59.999 | 52.381 | 0.00 | 0.00 | 44.77 | 4.02 |
865 | 1375 | 0.811616 | GCTACTTATGCTGCCACGCT | 60.812 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
935 | 1459 | 2.158957 | TGGTCAGAGAGTGTGAACCAAC | 60.159 | 50.000 | 0.00 | 0.00 | 29.85 | 3.77 |
937 | 1461 | 1.412710 | GTGGTCAGAGAGTGTGAACCA | 59.587 | 52.381 | 0.00 | 0.00 | 29.85 | 3.67 |
971 | 1499 | 0.248843 | GAGCTCTGTCAGGAACCCAG | 59.751 | 60.000 | 6.43 | 0.00 | 0.00 | 4.45 |
997 | 1546 | 4.839706 | GCCATCCGCCCCCATGTT | 62.840 | 66.667 | 0.00 | 0.00 | 0.00 | 2.71 |
1110 | 1659 | 2.166459 | CTGGCGGTAGAAGATGAAGACA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1246 | 1812 | 1.876497 | TTCCTGCAAAATCAGCGGCC | 61.876 | 55.000 | 0.00 | 0.00 | 37.05 | 6.13 |
1248 | 1814 | 2.437200 | TTTTCCTGCAAAATCAGCGG | 57.563 | 45.000 | 0.00 | 0.00 | 38.10 | 5.52 |
1405 | 2119 | 3.183793 | TGGATCAGTCATTCATCACCG | 57.816 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
1408 | 2122 | 5.747342 | TCAACATGGATCAGTCATTCATCA | 58.253 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
1424 | 2144 | 5.712004 | TGCAAACAGAACCATATCAACATG | 58.288 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
1439 | 2159 | 6.246420 | AGCTAAATGTAGTTCTGCAAACAG | 57.754 | 37.500 | 12.28 | 0.00 | 45.95 | 3.16 |
1449 | 2169 | 9.502091 | TTGTACAGATTCAAGCTAAATGTAGTT | 57.498 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
1561 | 2281 | 2.762327 | GGTGGGTCGATTAGTACCTCAA | 59.238 | 50.000 | 0.00 | 0.00 | 35.97 | 3.02 |
1575 | 2295 | 0.900421 | GTACAGTGGTAGGGTGGGTC | 59.100 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1577 | 2297 | 0.612732 | TCGTACAGTGGTAGGGTGGG | 60.613 | 60.000 | 0.00 | 0.00 | 36.33 | 4.61 |
1752 | 2616 | 2.073716 | TGGTTCACCGGGTTCAGGT | 61.074 | 57.895 | 6.32 | 0.00 | 43.97 | 4.00 |
1891 | 2755 | 1.079819 | GTACTCCTTGAGCAGCGCA | 60.080 | 57.895 | 11.47 | 0.00 | 32.04 | 6.09 |
2056 | 2923 | 9.159364 | CATTGACAAGACAGAGAATTAAGATGA | 57.841 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
2057 | 2924 | 8.396390 | CCATTGACAAGACAGAGAATTAAGATG | 58.604 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2058 | 2925 | 8.105829 | ACCATTGACAAGACAGAGAATTAAGAT | 58.894 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2087 | 2978 | 1.553690 | CCAGTCCATCAACCGGGAGT | 61.554 | 60.000 | 6.32 | 0.00 | 37.32 | 3.85 |
2088 | 2979 | 1.221840 | CCAGTCCATCAACCGGGAG | 59.778 | 63.158 | 6.32 | 0.00 | 32.85 | 4.30 |
2089 | 2980 | 1.537889 | ACCAGTCCATCAACCGGGA | 60.538 | 57.895 | 6.32 | 0.00 | 0.00 | 5.14 |
2090 | 2981 | 1.377202 | CACCAGTCCATCAACCGGG | 60.377 | 63.158 | 6.32 | 0.00 | 0.00 | 5.73 |
2091 | 2982 | 2.040544 | GCACCAGTCCATCAACCGG | 61.041 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
2092 | 2983 | 0.677731 | ATGCACCAGTCCATCAACCG | 60.678 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2093 | 2984 | 0.813184 | CATGCACCAGTCCATCAACC | 59.187 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2094 | 2985 | 0.813184 | CCATGCACCAGTCCATCAAC | 59.187 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2095 | 2986 | 0.323633 | CCCATGCACCAGTCCATCAA | 60.324 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2096 | 2987 | 1.303948 | CCCATGCACCAGTCCATCA | 59.696 | 57.895 | 0.00 | 0.00 | 0.00 | 3.07 |
2097 | 2988 | 1.454479 | CCCCATGCACCAGTCCATC | 60.454 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2098 | 2989 | 2.240918 | ACCCCATGCACCAGTCCAT | 61.241 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
2103 | 2994 | 2.361610 | GTCCACCCCATGCACCAG | 60.362 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
2240 | 3134 | 2.552315 | GCAGAAAATGGTGAGGACGAAA | 59.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
2315 | 3209 | 3.815401 | CGGAAGCTTGAAAGAAGAAGGAA | 59.185 | 43.478 | 2.10 | 0.00 | 0.00 | 3.36 |
2316 | 3210 | 3.403038 | CGGAAGCTTGAAAGAAGAAGGA | 58.597 | 45.455 | 2.10 | 0.00 | 0.00 | 3.36 |
2317 | 3211 | 3.820777 | CGGAAGCTTGAAAGAAGAAGG | 57.179 | 47.619 | 2.10 | 0.00 | 0.00 | 3.46 |
2336 | 3230 | 2.159379 | TGTGTAGATCAGTAGTGCAGCG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2557 | 3462 | 1.544759 | CCCCGTTAACTTGGTTGCTCT | 60.545 | 52.381 | 3.71 | 0.00 | 0.00 | 4.09 |
2642 | 3547 | 2.566279 | GCATGAGATAGATGGAGCCTCA | 59.434 | 50.000 | 0.00 | 0.00 | 38.12 | 3.86 |
2678 | 3595 | 6.914665 | TCCCCAATCTAATCAGAATTCACAT | 58.085 | 36.000 | 8.44 | 0.00 | 33.50 | 3.21 |
2690 | 3607 | 5.339118 | GGCCATTTTTGTTCCCCAATCTAAT | 60.339 | 40.000 | 0.00 | 0.00 | 31.81 | 1.73 |
2692 | 3609 | 3.517500 | GGCCATTTTTGTTCCCCAATCTA | 59.482 | 43.478 | 0.00 | 0.00 | 31.81 | 1.98 |
2694 | 3611 | 2.617788 | GGGCCATTTTTGTTCCCCAATC | 60.618 | 50.000 | 4.39 | 0.00 | 31.81 | 2.67 |
2695 | 3612 | 1.354031 | GGGCCATTTTTGTTCCCCAAT | 59.646 | 47.619 | 4.39 | 0.00 | 31.81 | 3.16 |
2699 | 3616 | 4.260985 | CAATTAGGGCCATTTTTGTTCCC | 58.739 | 43.478 | 6.18 | 0.00 | 37.24 | 3.97 |
2700 | 3617 | 4.019771 | TCCAATTAGGGCCATTTTTGTTCC | 60.020 | 41.667 | 6.18 | 0.00 | 38.24 | 3.62 |
2701 | 3618 | 5.159273 | TCCAATTAGGGCCATTTTTGTTC | 57.841 | 39.130 | 6.18 | 0.00 | 38.24 | 3.18 |
2702 | 3619 | 5.777526 | ATCCAATTAGGGCCATTTTTGTT | 57.222 | 34.783 | 6.18 | 0.00 | 38.24 | 2.83 |
2710 | 3641 | 4.078922 | TGGTGATAAATCCAATTAGGGCCA | 60.079 | 41.667 | 6.18 | 0.00 | 38.24 | 5.36 |
2717 | 3648 | 7.174107 | CCAAAGAGTGGTGATAAATCCAATT | 57.826 | 36.000 | 0.00 | 0.00 | 43.20 | 2.32 |
2767 | 3701 | 6.694447 | CAATTTGAGGTGATCAGGATTTGTT | 58.306 | 36.000 | 0.00 | 0.00 | 39.68 | 2.83 |
2776 | 3710 | 8.467963 | ACATAATATGCAATTTGAGGTGATCA | 57.532 | 30.769 | 0.00 | 0.00 | 35.62 | 2.92 |
2799 | 3733 | 6.488683 | ACTTTGCATTGTAAGGCTTAGTAACA | 59.511 | 34.615 | 7.33 | 1.42 | 36.52 | 2.41 |
2800 | 3734 | 6.909909 | ACTTTGCATTGTAAGGCTTAGTAAC | 58.090 | 36.000 | 7.33 | 0.00 | 36.52 | 2.50 |
2801 | 3735 | 7.519032 | AACTTTGCATTGTAAGGCTTAGTAA | 57.481 | 32.000 | 7.33 | 6.77 | 36.52 | 2.24 |
2803 | 3737 | 6.040391 | TCAAACTTTGCATTGTAAGGCTTAGT | 59.960 | 34.615 | 7.33 | 0.00 | 36.52 | 2.24 |
2804 | 3738 | 6.446318 | TCAAACTTTGCATTGTAAGGCTTAG | 58.554 | 36.000 | 7.33 | 0.00 | 36.52 | 2.18 |
2805 | 3739 | 6.398234 | TCAAACTTTGCATTGTAAGGCTTA | 57.602 | 33.333 | 2.04 | 2.04 | 36.52 | 3.09 |
2806 | 3740 | 5.275067 | TCAAACTTTGCATTGTAAGGCTT | 57.725 | 34.783 | 4.58 | 4.58 | 36.52 | 4.35 |
2807 | 3741 | 4.935352 | TCAAACTTTGCATTGTAAGGCT | 57.065 | 36.364 | 2.86 | 0.00 | 36.52 | 4.58 |
2808 | 3742 | 4.084380 | GCTTCAAACTTTGCATTGTAAGGC | 60.084 | 41.667 | 1.22 | 0.00 | 36.03 | 4.35 |
2809 | 3743 | 4.448732 | GGCTTCAAACTTTGCATTGTAAGG | 59.551 | 41.667 | 1.22 | 0.00 | 0.00 | 2.69 |
2810 | 3744 | 5.291971 | AGGCTTCAAACTTTGCATTGTAAG | 58.708 | 37.500 | 0.00 | 0.00 | 0.00 | 2.34 |
2811 | 3745 | 5.275067 | AGGCTTCAAACTTTGCATTGTAA | 57.725 | 34.783 | 0.00 | 0.00 | 0.00 | 2.41 |
2812 | 3746 | 4.935352 | AGGCTTCAAACTTTGCATTGTA | 57.065 | 36.364 | 0.00 | 0.00 | 0.00 | 2.41 |
2813 | 3747 | 3.825143 | AGGCTTCAAACTTTGCATTGT | 57.175 | 38.095 | 0.00 | 0.00 | 0.00 | 2.71 |
2814 | 3748 | 3.495753 | GGAAGGCTTCAAACTTTGCATTG | 59.504 | 43.478 | 27.17 | 0.00 | 29.51 | 2.82 |
2815 | 3749 | 3.389002 | AGGAAGGCTTCAAACTTTGCATT | 59.611 | 39.130 | 27.17 | 0.00 | 32.06 | 3.56 |
2816 | 3750 | 2.967887 | AGGAAGGCTTCAAACTTTGCAT | 59.032 | 40.909 | 27.17 | 0.00 | 0.00 | 3.96 |
2817 | 3751 | 2.362077 | GAGGAAGGCTTCAAACTTTGCA | 59.638 | 45.455 | 27.17 | 0.00 | 0.00 | 4.08 |
2818 | 3752 | 2.288457 | GGAGGAAGGCTTCAAACTTTGC | 60.288 | 50.000 | 27.17 | 8.48 | 0.00 | 3.68 |
2819 | 3753 | 2.030805 | CGGAGGAAGGCTTCAAACTTTG | 60.031 | 50.000 | 27.17 | 9.12 | 0.00 | 2.77 |
2820 | 3754 | 2.230660 | CGGAGGAAGGCTTCAAACTTT | 58.769 | 47.619 | 27.17 | 6.47 | 0.00 | 2.66 |
2821 | 3755 | 1.143073 | ACGGAGGAAGGCTTCAAACTT | 59.857 | 47.619 | 27.17 | 8.27 | 0.00 | 2.66 |
2822 | 3756 | 0.765510 | ACGGAGGAAGGCTTCAAACT | 59.234 | 50.000 | 27.17 | 15.83 | 0.00 | 2.66 |
2823 | 3757 | 1.605753 | AACGGAGGAAGGCTTCAAAC | 58.394 | 50.000 | 27.17 | 16.80 | 0.00 | 2.93 |
2824 | 3758 | 2.227194 | GAAACGGAGGAAGGCTTCAAA | 58.773 | 47.619 | 27.17 | 0.00 | 0.00 | 2.69 |
2825 | 3759 | 1.876416 | CGAAACGGAGGAAGGCTTCAA | 60.876 | 52.381 | 27.17 | 0.00 | 0.00 | 2.69 |
2826 | 3760 | 0.320421 | CGAAACGGAGGAAGGCTTCA | 60.320 | 55.000 | 27.17 | 0.00 | 0.00 | 3.02 |
2827 | 3761 | 0.037605 | TCGAAACGGAGGAAGGCTTC | 60.038 | 55.000 | 18.98 | 18.98 | 0.00 | 3.86 |
2828 | 3762 | 0.395312 | TTCGAAACGGAGGAAGGCTT | 59.605 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2829 | 3763 | 0.395312 | TTTCGAAACGGAGGAAGGCT | 59.605 | 50.000 | 6.47 | 0.00 | 0.00 | 4.58 |
2830 | 3764 | 1.232119 | TTTTCGAAACGGAGGAAGGC | 58.768 | 50.000 | 10.79 | 0.00 | 0.00 | 4.35 |
2849 | 3783 | 5.186992 | ACAGTGTAAGGCTTCAAACCTTTTT | 59.813 | 36.000 | 1.30 | 0.00 | 45.39 | 1.94 |
2850 | 3784 | 4.709886 | ACAGTGTAAGGCTTCAAACCTTTT | 59.290 | 37.500 | 1.30 | 0.00 | 45.39 | 2.27 |
2851 | 3785 | 4.278310 | ACAGTGTAAGGCTTCAAACCTTT | 58.722 | 39.130 | 1.30 | 0.00 | 45.39 | 3.11 |
2853 | 3787 | 3.577805 | ACAGTGTAAGGCTTCAAACCT | 57.422 | 42.857 | 1.30 | 0.00 | 40.02 | 3.50 |
2854 | 3788 | 5.705905 | AGATTACAGTGTAAGGCTTCAAACC | 59.294 | 40.000 | 19.87 | 0.00 | 0.00 | 3.27 |
2855 | 3789 | 6.803154 | AGATTACAGTGTAAGGCTTCAAAC | 57.197 | 37.500 | 19.87 | 0.51 | 0.00 | 2.93 |
2856 | 3790 | 7.500892 | TCAAAGATTACAGTGTAAGGCTTCAAA | 59.499 | 33.333 | 23.37 | 14.45 | 0.00 | 2.69 |
2857 | 3791 | 6.995686 | TCAAAGATTACAGTGTAAGGCTTCAA | 59.004 | 34.615 | 23.37 | 16.03 | 0.00 | 2.69 |
2858 | 3792 | 6.530120 | TCAAAGATTACAGTGTAAGGCTTCA | 58.470 | 36.000 | 23.37 | 15.39 | 0.00 | 3.02 |
2859 | 3793 | 7.435068 | TTCAAAGATTACAGTGTAAGGCTTC | 57.565 | 36.000 | 23.37 | 15.92 | 0.00 | 3.86 |
2885 | 3819 | 4.358494 | AGTAGAACTACAAGTAGCGCAG | 57.642 | 45.455 | 11.47 | 0.00 | 38.48 | 5.18 |
2886 | 3820 | 4.778534 | AAGTAGAACTACAAGTAGCGCA | 57.221 | 40.909 | 11.47 | 0.00 | 38.48 | 6.09 |
2887 | 3821 | 7.572502 | TTAAAAGTAGAACTACAAGTAGCGC | 57.427 | 36.000 | 13.34 | 0.00 | 38.48 | 5.92 |
2891 | 3825 | 9.783081 | CCCCTTTTAAAAGTAGAACTACAAGTA | 57.217 | 33.333 | 23.04 | 1.16 | 38.48 | 2.24 |
2892 | 3826 | 8.496916 | TCCCCTTTTAAAAGTAGAACTACAAGT | 58.503 | 33.333 | 23.04 | 1.95 | 38.48 | 3.16 |
2893 | 3827 | 8.913487 | TCCCCTTTTAAAAGTAGAACTACAAG | 57.087 | 34.615 | 23.04 | 6.38 | 38.48 | 3.16 |
2894 | 3828 | 8.496916 | ACTCCCCTTTTAAAAGTAGAACTACAA | 58.503 | 33.333 | 23.04 | 0.00 | 38.48 | 2.41 |
2895 | 3829 | 8.037723 | ACTCCCCTTTTAAAAGTAGAACTACA | 57.962 | 34.615 | 23.04 | 0.88 | 38.48 | 2.74 |
2896 | 3830 | 7.605691 | GGACTCCCCTTTTAAAAGTAGAACTAC | 59.394 | 40.741 | 23.04 | 4.05 | 34.20 | 2.73 |
2897 | 3831 | 7.293062 | TGGACTCCCCTTTTAAAAGTAGAACTA | 59.707 | 37.037 | 23.04 | 12.25 | 34.20 | 2.24 |
2898 | 3832 | 6.102174 | TGGACTCCCCTTTTAAAAGTAGAACT | 59.898 | 38.462 | 23.04 | 9.47 | 34.20 | 3.01 |
2899 | 3833 | 6.301486 | TGGACTCCCCTTTTAAAAGTAGAAC | 58.699 | 40.000 | 23.04 | 15.18 | 34.20 | 3.01 |
2900 | 3834 | 6.518516 | TGGACTCCCCTTTTAAAAGTAGAA | 57.481 | 37.500 | 23.04 | 7.90 | 34.20 | 2.10 |
2901 | 3835 | 6.713731 | ATGGACTCCCCTTTTAAAAGTAGA | 57.286 | 37.500 | 23.04 | 17.85 | 34.20 | 2.59 |
2902 | 3836 | 6.537660 | CGTATGGACTCCCCTTTTAAAAGTAG | 59.462 | 42.308 | 23.04 | 18.74 | 34.20 | 2.57 |
2903 | 3837 | 6.013466 | ACGTATGGACTCCCCTTTTAAAAGTA | 60.013 | 38.462 | 23.04 | 9.98 | 34.20 | 2.24 |
2904 | 3838 | 5.221986 | ACGTATGGACTCCCCTTTTAAAAGT | 60.222 | 40.000 | 23.04 | 8.04 | 34.20 | 2.66 |
2905 | 3839 | 5.250982 | ACGTATGGACTCCCCTTTTAAAAG | 58.749 | 41.667 | 19.19 | 19.19 | 35.38 | 2.27 |
2906 | 3840 | 5.221884 | TGACGTATGGACTCCCCTTTTAAAA | 60.222 | 40.000 | 0.00 | 0.00 | 35.38 | 1.52 |
2907 | 3841 | 4.286549 | TGACGTATGGACTCCCCTTTTAAA | 59.713 | 41.667 | 0.00 | 0.00 | 35.38 | 1.52 |
2908 | 3842 | 3.839490 | TGACGTATGGACTCCCCTTTTAA | 59.161 | 43.478 | 0.00 | 0.00 | 35.38 | 1.52 |
2909 | 3843 | 3.443052 | TGACGTATGGACTCCCCTTTTA | 58.557 | 45.455 | 0.00 | 0.00 | 35.38 | 1.52 |
2910 | 3844 | 2.262637 | TGACGTATGGACTCCCCTTTT | 58.737 | 47.619 | 0.00 | 0.00 | 35.38 | 2.27 |
2911 | 3845 | 1.946984 | TGACGTATGGACTCCCCTTT | 58.053 | 50.000 | 0.00 | 0.00 | 35.38 | 3.11 |
2912 | 3846 | 2.176247 | ATGACGTATGGACTCCCCTT | 57.824 | 50.000 | 0.00 | 0.00 | 35.38 | 3.95 |
2913 | 3847 | 2.176247 | AATGACGTATGGACTCCCCT | 57.824 | 50.000 | 0.00 | 0.00 | 35.38 | 4.79 |
2914 | 3848 | 3.118371 | AGAAAATGACGTATGGACTCCCC | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 4.81 |
2915 | 3849 | 4.138487 | AGAAAATGACGTATGGACTCCC | 57.862 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
2916 | 3850 | 6.338937 | ACTAAGAAAATGACGTATGGACTCC | 58.661 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2917 | 3851 | 7.253684 | CGAACTAAGAAAATGACGTATGGACTC | 60.254 | 40.741 | 0.00 | 0.00 | 0.00 | 3.36 |
2918 | 3852 | 6.530534 | CGAACTAAGAAAATGACGTATGGACT | 59.469 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2919 | 3853 | 6.529125 | TCGAACTAAGAAAATGACGTATGGAC | 59.471 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
2920 | 3854 | 6.623486 | TCGAACTAAGAAAATGACGTATGGA | 58.377 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2921 | 3855 | 6.880822 | TCGAACTAAGAAAATGACGTATGG | 57.119 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2922 | 3856 | 6.841286 | GCATCGAACTAAGAAAATGACGTATG | 59.159 | 38.462 | 0.00 | 0.00 | 0.00 | 2.39 |
2923 | 3857 | 6.018994 | GGCATCGAACTAAGAAAATGACGTAT | 60.019 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2924 | 3858 | 5.290158 | GGCATCGAACTAAGAAAATGACGTA | 59.710 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
2925 | 3859 | 4.092968 | GGCATCGAACTAAGAAAATGACGT | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2926 | 3860 | 4.330074 | AGGCATCGAACTAAGAAAATGACG | 59.670 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2927 | 3861 | 5.803020 | AGGCATCGAACTAAGAAAATGAC | 57.197 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2928 | 3862 | 5.354234 | GGAAGGCATCGAACTAAGAAAATGA | 59.646 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2929 | 3863 | 5.449177 | GGGAAGGCATCGAACTAAGAAAATG | 60.449 | 44.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2930 | 3864 | 4.640647 | GGGAAGGCATCGAACTAAGAAAAT | 59.359 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2931 | 3865 | 4.007659 | GGGAAGGCATCGAACTAAGAAAA | 58.992 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2932 | 3866 | 3.606687 | GGGAAGGCATCGAACTAAGAAA | 58.393 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2933 | 3867 | 2.418197 | CGGGAAGGCATCGAACTAAGAA | 60.418 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2934 | 3868 | 1.136305 | CGGGAAGGCATCGAACTAAGA | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 2.10 |
2935 | 3869 | 1.134788 | ACGGGAAGGCATCGAACTAAG | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 2.18 |
2936 | 3870 | 0.899720 | ACGGGAAGGCATCGAACTAA | 59.100 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2937 | 3871 | 0.458669 | GACGGGAAGGCATCGAACTA | 59.541 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2938 | 3872 | 1.218316 | GACGGGAAGGCATCGAACT | 59.782 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
2939 | 3873 | 2.165301 | CGACGGGAAGGCATCGAAC | 61.165 | 63.158 | 0.00 | 0.00 | 36.70 | 3.95 |
2940 | 3874 | 1.672854 | ATCGACGGGAAGGCATCGAA | 61.673 | 55.000 | 0.00 | 0.00 | 45.77 | 3.71 |
2941 | 3875 | 2.071844 | GATCGACGGGAAGGCATCGA | 62.072 | 60.000 | 0.00 | 0.00 | 46.59 | 3.59 |
2942 | 3876 | 1.661821 | GATCGACGGGAAGGCATCG | 60.662 | 63.158 | 0.00 | 0.00 | 35.91 | 3.84 |
2943 | 3877 | 1.661821 | CGATCGACGGGAAGGCATC | 60.662 | 63.158 | 10.26 | 0.00 | 38.46 | 3.91 |
2944 | 3878 | 1.464376 | ATCGATCGACGGGAAGGCAT | 61.464 | 55.000 | 22.06 | 0.00 | 42.82 | 4.40 |
2945 | 3879 | 0.820482 | TATCGATCGACGGGAAGGCA | 60.820 | 55.000 | 22.06 | 0.00 | 42.82 | 4.75 |
2946 | 3880 | 0.109689 | CTATCGATCGACGGGAAGGC | 60.110 | 60.000 | 22.06 | 0.00 | 42.82 | 4.35 |
2947 | 3881 | 0.522180 | CCTATCGATCGACGGGAAGG | 59.478 | 60.000 | 22.06 | 17.07 | 42.82 | 3.46 |
2948 | 3882 | 1.197264 | GTCCTATCGATCGACGGGAAG | 59.803 | 57.143 | 30.02 | 18.62 | 42.82 | 3.46 |
2949 | 3883 | 1.233019 | GTCCTATCGATCGACGGGAA | 58.767 | 55.000 | 30.02 | 17.93 | 42.82 | 3.97 |
2950 | 3884 | 0.947660 | CGTCCTATCGATCGACGGGA | 60.948 | 60.000 | 27.70 | 26.81 | 44.26 | 5.14 |
2951 | 3885 | 1.496393 | CGTCCTATCGATCGACGGG | 59.504 | 63.158 | 27.70 | 25.09 | 44.26 | 5.28 |
2954 | 3888 | 2.543012 | TGAAGACGTCCTATCGATCGAC | 59.457 | 50.000 | 22.06 | 6.91 | 34.70 | 4.20 |
2955 | 3889 | 2.543012 | GTGAAGACGTCCTATCGATCGA | 59.457 | 50.000 | 21.86 | 21.86 | 34.70 | 3.59 |
2956 | 3890 | 2.349627 | GGTGAAGACGTCCTATCGATCG | 60.350 | 54.545 | 13.01 | 9.36 | 34.70 | 3.69 |
2957 | 3891 | 2.030981 | GGGTGAAGACGTCCTATCGATC | 60.031 | 54.545 | 13.01 | 0.52 | 34.70 | 3.69 |
2958 | 3892 | 1.955080 | GGGTGAAGACGTCCTATCGAT | 59.045 | 52.381 | 13.01 | 2.16 | 34.70 | 3.59 |
2959 | 3893 | 1.064906 | AGGGTGAAGACGTCCTATCGA | 60.065 | 52.381 | 13.01 | 0.00 | 34.70 | 3.59 |
2960 | 3894 | 1.390565 | AGGGTGAAGACGTCCTATCG | 58.609 | 55.000 | 13.01 | 0.00 | 0.00 | 2.92 |
2961 | 3895 | 3.315749 | CACTAGGGTGAAGACGTCCTATC | 59.684 | 52.174 | 13.01 | 9.21 | 45.61 | 2.08 |
2962 | 3896 | 3.288964 | CACTAGGGTGAAGACGTCCTAT | 58.711 | 50.000 | 13.01 | 0.00 | 45.61 | 2.57 |
2963 | 3897 | 2.719739 | CACTAGGGTGAAGACGTCCTA | 58.280 | 52.381 | 13.01 | 5.07 | 45.61 | 2.94 |
2964 | 3898 | 1.546961 | CACTAGGGTGAAGACGTCCT | 58.453 | 55.000 | 13.01 | 0.00 | 45.61 | 3.85 |
2965 | 3899 | 0.108756 | GCACTAGGGTGAAGACGTCC | 60.109 | 60.000 | 13.01 | 0.00 | 45.61 | 4.79 |
2966 | 3900 | 0.889306 | AGCACTAGGGTGAAGACGTC | 59.111 | 55.000 | 7.70 | 7.70 | 45.61 | 4.34 |
2967 | 3901 | 3.053146 | AGCACTAGGGTGAAGACGT | 57.947 | 52.632 | 0.00 | 0.00 | 45.61 | 4.34 |
2977 | 3911 | 1.813513 | CAAACTCACCCAGCACTAGG | 58.186 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2978 | 3912 | 1.160137 | GCAAACTCACCCAGCACTAG | 58.840 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2984 | 3918 | 1.535462 | CTTTACCGCAAACTCACCCAG | 59.465 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
3008 | 3942 | 0.181587 | TCGGCTTTTGTTCTGACCCA | 59.818 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
3201 | 4135 | 5.818136 | ATTGAACATAAACGACCATCTGG | 57.182 | 39.130 | 0.00 | 0.00 | 42.17 | 3.86 |
3277 | 4211 | 2.769893 | GGTAACGAGTTTGCCCAAGTA | 58.230 | 47.619 | 0.00 | 0.00 | 33.90 | 2.24 |
3340 | 4274 | 3.496331 | GGGAAACTTCTGTTCCCAATCA | 58.504 | 45.455 | 15.82 | 0.00 | 40.29 | 2.57 |
3421 | 4355 | 1.306141 | ATGAGTCTGAGCCCCCGAA | 60.306 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
3506 | 4440 | 5.068215 | TCTTTAGCCCACTCTCTAGCTAT | 57.932 | 43.478 | 0.00 | 0.00 | 37.64 | 2.97 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.