Multiple sequence alignment - TraesCS3B01G366400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G366400 chr3B 100.000 4741 0 0 1 4741 578766910 578762170 0.000000e+00 8756.0
1 TraesCS3B01G366400 chr3B 80.011 1756 276 47 999 2707 578814423 578812696 0.000000e+00 1229.0
2 TraesCS3B01G366400 chr3B 87.252 1059 98 22 2751 3792 578812214 578811176 0.000000e+00 1173.0
3 TraesCS3B01G366400 chr3B 82.459 1220 182 22 1476 2679 578617942 578616739 0.000000e+00 1038.0
4 TraesCS3B01G366400 chr3B 88.226 654 74 3 4089 4741 578614496 578613845 0.000000e+00 778.0
5 TraesCS3B01G366400 chr3B 91.071 560 47 1 4136 4695 578605191 578604635 0.000000e+00 754.0
6 TraesCS3B01G366400 chr3B 87.193 570 66 4 3229 3792 578775115 578774547 4.000000e-180 641.0
7 TraesCS3B01G366400 chr3B 80.804 771 129 14 1297 2053 578599056 578598291 1.900000e-163 586.0
8 TraesCS3B01G366400 chr3B 89.487 409 32 8 2745 3150 578775703 578775303 1.520000e-139 507.0
9 TraesCS3B01G366400 chr3B 83.495 103 11 4 3115 3214 578763691 578763790 1.820000e-14 91.6
10 TraesCS3B01G366400 chr3B 97.222 36 1 0 3963 3998 578593375 578593340 1.420000e-05 62.1
11 TraesCS3B01G366400 chr3D 92.136 3548 225 30 1215 4741 441256249 441252735 0.000000e+00 4957.0
12 TraesCS3B01G366400 chr3D 90.893 1120 70 10 71 1182 441257343 441256248 0.000000e+00 1474.0
13 TraesCS3B01G366400 chr3D 82.754 1467 214 26 1316 2761 441263952 441262504 0.000000e+00 1271.0
14 TraesCS3B01G366400 chr3D 87.063 1059 99 23 2751 3792 441262266 441261229 0.000000e+00 1162.0
15 TraesCS3B01G366400 chr3D 90.702 570 50 2 4126 4694 441176075 441175508 0.000000e+00 756.0
16 TraesCS3B01G366400 chr3D 87.789 606 64 9 4095 4695 441185343 441184743 0.000000e+00 701.0
17 TraesCS3B01G366400 chr3D 86.481 540 65 5 3257 3791 441423369 441422833 1.900000e-163 586.0
18 TraesCS3B01G366400 chr3D 83.287 359 49 9 2795 3149 441177745 441177394 2.130000e-83 320.0
19 TraesCS3B01G366400 chr3D 91.818 110 8 1 3789 3897 477910559 477910668 8.220000e-33 152.0
20 TraesCS3B01G366400 chr3D 100.000 32 0 0 3183 3214 441254311 441254342 5.120000e-05 60.2
21 TraesCS3B01G366400 chr3A 86.357 2866 318 49 962 3792 581844264 581841437 0.000000e+00 3059.0
22 TraesCS3B01G366400 chr3A 95.593 658 21 3 4089 4741 581840884 581840230 0.000000e+00 1048.0
23 TraesCS3B01G366400 chr3A 90.418 574 48 5 4126 4695 581605302 581604732 0.000000e+00 749.0
24 TraesCS3B01G366400 chr3A 88.644 590 59 7 4109 4695 581615678 581615094 0.000000e+00 712.0
25 TraesCS3B01G366400 chr3A 86.964 606 72 5 2160 2761 581850995 581850393 0.000000e+00 675.0
26 TraesCS3B01G366400 chr3A 81.755 718 111 11 1266 1978 581390985 581390283 2.460000e-162 582.0
27 TraesCS3B01G366400 chr3A 88.675 468 49 4 3328 3792 581849627 581849161 6.890000e-158 568.0
28 TraesCS3B01G366400 chr3A 89.509 448 43 3 3345 3791 582285294 582284850 8.910000e-157 564.0
29 TraesCS3B01G366400 chr3A 80.830 699 120 10 1269 1963 581624300 581623612 1.940000e-148 536.0
30 TraesCS3B01G366400 chr3A 80.000 725 117 21 2053 2761 581390236 581389524 1.180000e-140 510.0
31 TraesCS3B01G366400 chr3A 89.950 398 30 7 2751 3145 581850072 581849682 5.480000e-139 505.0
32 TraesCS3B01G366400 chr3A 79.610 667 120 13 1313 1970 581380076 581379417 9.290000e-127 464.0
33 TraesCS3B01G366400 chr3A 87.228 368 33 7 2788 3145 582285785 582285422 1.590000e-109 407.0
34 TraesCS3B01G366400 chr3A 89.965 289 28 1 519 807 581844437 581844724 5.790000e-99 372.0
35 TraesCS3B01G366400 chr3A 77.996 559 107 13 2160 2707 581623524 581622971 2.110000e-88 337.0
36 TraesCS3B01G366400 chr3A 80.851 423 43 16 103 515 581845124 581844730 9.970000e-77 298.0
37 TraesCS3B01G366400 chr3A 94.253 174 9 1 3893 4066 581841440 581841268 1.010000e-66 265.0
38 TraesCS3B01G366400 chr6B 88.686 601 65 2 4090 4687 696332450 696331850 0.000000e+00 730.0
39 TraesCS3B01G366400 chr6B 85.409 562 66 9 3257 3803 696333298 696332738 1.910000e-158 569.0
40 TraesCS3B01G366400 chr6B 86.732 407 38 12 2751 3145 696333720 696333318 5.630000e-119 438.0
41 TraesCS3B01G366400 chr6D 78.591 369 67 10 2380 2740 2068516 2068880 2.850000e-57 233.0
42 TraesCS3B01G366400 chr6A 80.000 315 60 3 2376 2689 823388 823076 3.690000e-56 230.0
43 TraesCS3B01G366400 chr6A 90.517 116 11 0 3782 3897 101842735 101842620 2.280000e-33 154.0
44 TraesCS3B01G366400 chr2D 92.920 113 7 1 3786 3897 192181589 192181477 3.800000e-36 163.0
45 TraesCS3B01G366400 chr7B 92.105 114 7 2 3789 3900 357651484 357651597 4.910000e-35 159.0
46 TraesCS3B01G366400 chr7B 92.593 108 5 3 3789 3894 213457572 213457678 8.220000e-33 152.0
47 TraesCS3B01G366400 chr2A 92.727 110 7 1 3786 3894 205917597 205917706 1.770000e-34 158.0
48 TraesCS3B01G366400 chr7A 93.269 104 6 1 3789 3891 252178398 252178501 8.220000e-33 152.0
49 TraesCS3B01G366400 chr4D 86.719 128 11 6 3774 3898 259497245 259497369 2.300000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G366400 chr3B 578762170 578766910 4740 True 8756.000000 8756 100.000000 1 4741 1 chr3B.!!$R4 4740
1 TraesCS3B01G366400 chr3B 578811176 578814423 3247 True 1201.000000 1229 83.631500 999 3792 2 chr3B.!!$R7 2793
2 TraesCS3B01G366400 chr3B 578613845 578617942 4097 True 908.000000 1038 85.342500 1476 4741 2 chr3B.!!$R5 3265
3 TraesCS3B01G366400 chr3B 578604635 578605191 556 True 754.000000 754 91.071000 4136 4695 1 chr3B.!!$R3 559
4 TraesCS3B01G366400 chr3B 578598291 578599056 765 True 586.000000 586 80.804000 1297 2053 1 chr3B.!!$R2 756
5 TraesCS3B01G366400 chr3B 578774547 578775703 1156 True 574.000000 641 88.340000 2745 3792 2 chr3B.!!$R6 1047
6 TraesCS3B01G366400 chr3D 441252735 441263952 11217 True 2216.000000 4957 88.211500 71 4741 4 chr3D.!!$R4 4670
7 TraesCS3B01G366400 chr3D 441184743 441185343 600 True 701.000000 701 87.789000 4095 4695 1 chr3D.!!$R1 600
8 TraesCS3B01G366400 chr3D 441422833 441423369 536 True 586.000000 586 86.481000 3257 3791 1 chr3D.!!$R2 534
9 TraesCS3B01G366400 chr3D 441175508 441177745 2237 True 538.000000 756 86.994500 2795 4694 2 chr3D.!!$R3 1899
10 TraesCS3B01G366400 chr3A 581840230 581845124 4894 True 1167.500000 3059 89.263500 103 4741 4 chr3A.!!$R6 4638
11 TraesCS3B01G366400 chr3A 581604732 581605302 570 True 749.000000 749 90.418000 4126 4695 1 chr3A.!!$R2 569
12 TraesCS3B01G366400 chr3A 581615094 581615678 584 True 712.000000 712 88.644000 4109 4695 1 chr3A.!!$R3 586
13 TraesCS3B01G366400 chr3A 581849161 581850995 1834 True 582.666667 675 88.529667 2160 3792 3 chr3A.!!$R7 1632
14 TraesCS3B01G366400 chr3A 581389524 581390985 1461 True 546.000000 582 80.877500 1266 2761 2 chr3A.!!$R4 1495
15 TraesCS3B01G366400 chr3A 582284850 582285785 935 True 485.500000 564 88.368500 2788 3791 2 chr3A.!!$R8 1003
16 TraesCS3B01G366400 chr3A 581379417 581380076 659 True 464.000000 464 79.610000 1313 1970 1 chr3A.!!$R1 657
17 TraesCS3B01G366400 chr3A 581622971 581624300 1329 True 436.500000 536 79.413000 1269 2707 2 chr3A.!!$R5 1438
18 TraesCS3B01G366400 chr6B 696331850 696333720 1870 True 579.000000 730 86.942333 2751 4687 3 chr6B.!!$R1 1936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.034198 TCATCTCGCGGTGACCAAAA 59.966 50.0 6.13 0.00 0.00 2.44 F
98 99 0.034198 TCTCGCGGTGACCAAAATGA 59.966 50.0 6.13 0.00 0.00 2.57 F
534 545 0.094730 GCGATTGCAGGTCGTAACAC 59.905 55.0 20.10 4.58 40.98 3.32 F
2097 10239 0.034574 TTGCCCGTTGTCATGGCTAT 60.035 50.0 0.00 0.00 45.56 2.97 F
2099 10241 0.381801 GCCCGTTGTCATGGCTATTG 59.618 55.0 0.00 0.00 42.01 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1167 1460 0.100682 GTGCATGCAGATTGAGCAGG 59.899 55.000 23.41 0.0 46.36 4.85 R
1550 1880 0.179034 GGCCCTCAGCAGATACTTGG 60.179 60.000 0.00 0.0 46.50 3.61 R
2221 10390 0.107081 CCAAGGGTACGTGGTCAACA 59.893 55.000 0.00 0.0 40.79 3.33 R
3012 11769 3.506455 TGCTCTTAGAGTAGTCGCAAGTT 59.494 43.478 11.18 0.0 32.93 2.66 R
3847 12935 5.289595 TGTCGCTCAAATGGATGTATCTAC 58.710 41.667 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.067616 CGTAGGAAACGCACTTCGG 58.932 57.895 0.00 0.00 46.10 4.30
62 63 0.665369 CGTAGGAAACGCACTTCGGT 60.665 55.000 0.00 0.00 46.10 4.69
63 64 1.066136 GTAGGAAACGCACTTCGGTC 58.934 55.000 0.00 0.00 43.86 4.79
64 65 0.037975 TAGGAAACGCACTTCGGTCC 60.038 55.000 0.00 0.00 43.04 4.46
65 66 2.322830 GGAAACGCACTTCGGTCCC 61.323 63.158 0.00 0.00 43.86 4.46
66 67 2.663852 AAACGCACTTCGGTCCCG 60.664 61.111 0.00 0.00 43.86 5.14
67 68 3.450043 AAACGCACTTCGGTCCCGT 62.450 57.895 5.52 0.00 43.86 5.28
68 69 4.657824 ACGCACTTCGGTCCCGTG 62.658 66.667 5.52 3.10 43.86 4.94
90 91 2.579787 CCGTCATCTCGCGGTGAC 60.580 66.667 21.86 21.86 42.73 3.67
91 92 2.579787 CGTCATCTCGCGGTGACC 60.580 66.667 24.06 13.05 41.22 4.02
92 93 2.571757 GTCATCTCGCGGTGACCA 59.428 61.111 21.45 4.51 38.98 4.02
93 94 1.080093 GTCATCTCGCGGTGACCAA 60.080 57.895 21.45 0.00 38.98 3.67
94 95 0.669318 GTCATCTCGCGGTGACCAAA 60.669 55.000 21.45 0.00 38.98 3.28
95 96 0.034198 TCATCTCGCGGTGACCAAAA 59.966 50.000 6.13 0.00 0.00 2.44
96 97 1.086696 CATCTCGCGGTGACCAAAAT 58.913 50.000 6.13 0.00 0.00 1.82
97 98 1.086696 ATCTCGCGGTGACCAAAATG 58.913 50.000 6.13 0.00 0.00 2.32
98 99 0.034198 TCTCGCGGTGACCAAAATGA 59.966 50.000 6.13 0.00 0.00 2.57
99 100 0.165944 CTCGCGGTGACCAAAATGAC 59.834 55.000 6.13 0.00 0.00 3.06
100 101 1.154488 CGCGGTGACCAAAATGACG 60.154 57.895 1.11 0.00 0.00 4.35
101 102 1.209127 GCGGTGACCAAAATGACGG 59.791 57.895 1.11 0.00 0.00 4.79
108 109 2.553770 CAAAATGACGGCGTCGCA 59.446 55.556 31.90 18.97 40.63 5.10
110 111 3.308878 AAAATGACGGCGTCGCAGC 62.309 57.895 31.90 12.02 40.63 5.25
136 137 4.961511 ACGGCTTGCGCTTGTCGA 62.962 61.111 27.31 0.00 41.67 4.20
138 139 4.430423 GGCTTGCGCTTGTCGACG 62.430 66.667 9.73 0.00 41.67 5.12
140 141 2.465920 CTTGCGCTTGTCGACGTC 59.534 61.111 9.73 5.18 41.67 4.34
142 143 1.548973 CTTGCGCTTGTCGACGTCTT 61.549 55.000 14.70 0.00 41.67 3.01
144 145 2.465920 CGCTTGTCGACGTCTTGC 59.534 61.111 14.70 9.19 41.67 4.01
146 147 1.775962 GCTTGTCGACGTCTTGCTC 59.224 57.895 14.70 0.13 0.00 4.26
147 148 1.935065 GCTTGTCGACGTCTTGCTCG 61.935 60.000 14.70 0.00 0.00 5.03
149 150 2.126812 GTCGACGTCTTGCTCGCT 60.127 61.111 14.70 0.00 0.00 4.93
150 151 2.126850 TCGACGTCTTGCTCGCTG 60.127 61.111 14.70 0.00 0.00 5.18
151 152 3.832171 CGACGTCTTGCTCGCTGC 61.832 66.667 14.70 0.00 43.25 5.25
152 153 3.832171 GACGTCTTGCTCGCTGCG 61.832 66.667 17.25 17.25 46.63 5.18
155 156 4.144681 GTCTTGCTCGCTGCGCTG 62.145 66.667 18.65 10.04 46.63 5.18
156 157 4.362476 TCTTGCTCGCTGCGCTGA 62.362 61.111 18.65 7.91 46.63 4.26
157 158 3.851077 CTTGCTCGCTGCGCTGAG 61.851 66.667 18.65 17.93 46.63 3.35
200 202 1.642037 CTCGACGTAAGCGGGACAGA 61.642 60.000 0.00 0.00 43.45 3.41
202 204 1.642037 CGACGTAAGCGGGACAGAGA 61.642 60.000 0.00 0.00 43.45 3.10
204 206 1.226323 CGTAAGCGGGACAGAGACG 60.226 63.158 0.00 0.00 0.00 4.18
208 210 3.138798 GCGGGACAGAGACGCCTA 61.139 66.667 0.00 0.00 46.92 3.93
209 211 2.799371 CGGGACAGAGACGCCTAC 59.201 66.667 0.00 0.00 0.00 3.18
211 213 2.772691 GGGACAGAGACGCCTACGG 61.773 68.421 0.00 0.00 46.04 4.02
216 218 0.463295 CAGAGACGCCTACGGACCTA 60.463 60.000 0.00 0.00 46.04 3.08
225 227 1.565067 CTACGGACCTACCCCAAACT 58.435 55.000 0.00 0.00 34.64 2.66
242 244 6.183360 CCCCAAACTAGATTGAAACCAAGTTT 60.183 38.462 13.87 0.00 38.54 2.66
243 245 6.701400 CCCAAACTAGATTGAAACCAAGTTTG 59.299 38.462 13.87 16.90 42.28 2.93
244 246 7.417342 CCCAAACTAGATTGAAACCAAGTTTGA 60.417 37.037 21.65 0.00 44.11 2.69
253 255 4.202070 TGAAACCAAGTTTGAATCCCGAAC 60.202 41.667 0.00 0.00 35.77 3.95
255 257 2.621526 ACCAAGTTTGAATCCCGAACAC 59.378 45.455 0.00 0.00 40.82 3.32
271 273 2.125673 ACACATACAGTCGCCGCC 60.126 61.111 0.00 0.00 0.00 6.13
311 319 1.110442 CCTGCCCTTTGTTTGTGACA 58.890 50.000 0.00 0.00 36.19 3.58
312 320 1.480137 CCTGCCCTTTGTTTGTGACAA 59.520 47.619 0.00 0.00 46.19 3.18
313 321 2.102925 CCTGCCCTTTGTTTGTGACAAT 59.897 45.455 0.00 0.00 46.99 2.71
314 322 3.432046 CCTGCCCTTTGTTTGTGACAATT 60.432 43.478 0.00 0.00 46.99 2.32
315 323 3.791245 TGCCCTTTGTTTGTGACAATTC 58.209 40.909 0.00 0.00 46.99 2.17
316 324 2.794350 GCCCTTTGTTTGTGACAATTCG 59.206 45.455 0.00 0.00 46.99 3.34
317 325 3.490078 GCCCTTTGTTTGTGACAATTCGA 60.490 43.478 0.00 0.00 46.99 3.71
318 326 4.041723 CCCTTTGTTTGTGACAATTCGAC 58.958 43.478 0.00 0.00 46.99 4.20
343 351 2.659063 CCGAGTGCCATCCTCCACA 61.659 63.158 0.00 0.00 34.48 4.17
345 353 0.812811 CGAGTGCCATCCTCCACATG 60.813 60.000 0.00 0.00 34.48 3.21
348 356 3.589881 GCCATCCTCCACATGCGC 61.590 66.667 0.00 0.00 0.00 6.09
361 369 0.179181 CATGCGCGCTGATGAAACTT 60.179 50.000 33.29 0.93 0.00 2.66
365 373 1.806511 CGCGCTGATGAAACTTGATG 58.193 50.000 5.56 0.00 0.00 3.07
367 375 2.348362 CGCGCTGATGAAACTTGATGTA 59.652 45.455 5.56 0.00 0.00 2.29
369 377 3.372206 GCGCTGATGAAACTTGATGTACT 59.628 43.478 0.00 0.00 0.00 2.73
370 378 4.566759 GCGCTGATGAAACTTGATGTACTA 59.433 41.667 0.00 0.00 0.00 1.82
377 385 7.334171 TGATGAAACTTGATGTACTACATGGTG 59.666 37.037 6.41 0.00 39.27 4.17
379 387 7.220740 TGAAACTTGATGTACTACATGGTGAA 58.779 34.615 6.41 0.00 39.27 3.18
382 390 8.635765 AACTTGATGTACTACATGGTGAAAAT 57.364 30.769 6.41 0.00 39.27 1.82
393 401 9.185680 ACTACATGGTGAAAATAATAAGAACCC 57.814 33.333 0.00 0.00 0.00 4.11
394 402 7.095695 ACATGGTGAAAATAATAAGAACCCG 57.904 36.000 0.00 0.00 0.00 5.28
464 475 3.025978 ACACCCGGTCGTTCTTATATCA 58.974 45.455 0.00 0.00 0.00 2.15
469 480 3.822735 CCGGTCGTTCTTATATCACCCTA 59.177 47.826 0.00 0.00 0.00 3.53
498 509 4.410743 GGGCTCGCTGCAACTTGC 62.411 66.667 6.82 6.82 45.15 4.01
505 516 0.386478 CGCTGCAACTTGCTCCTTTC 60.386 55.000 14.78 0.00 45.31 2.62
508 519 2.223900 GCTGCAACTTGCTCCTTTCTTT 60.224 45.455 14.78 0.00 45.31 2.52
510 521 4.499696 GCTGCAACTTGCTCCTTTCTTTTA 60.500 41.667 14.78 0.00 45.31 1.52
512 523 5.772521 TGCAACTTGCTCCTTTCTTTTATC 58.227 37.500 14.78 0.00 45.31 1.75
513 524 5.536161 TGCAACTTGCTCCTTTCTTTTATCT 59.464 36.000 14.78 0.00 45.31 1.98
514 525 5.860716 GCAACTTGCTCCTTTCTTTTATCTG 59.139 40.000 6.50 0.00 40.96 2.90
516 527 4.460731 ACTTGCTCCTTTCTTTTATCTGGC 59.539 41.667 0.00 0.00 0.00 4.85
518 529 3.270877 GCTCCTTTCTTTTATCTGGCGA 58.729 45.455 0.00 0.00 0.00 5.54
519 530 3.879892 GCTCCTTTCTTTTATCTGGCGAT 59.120 43.478 0.00 0.00 0.00 4.58
521 532 5.731686 GCTCCTTTCTTTTATCTGGCGATTG 60.732 44.000 0.00 0.00 0.00 2.67
522 533 4.096382 TCCTTTCTTTTATCTGGCGATTGC 59.904 41.667 0.00 0.00 41.71 3.56
523 534 4.142403 CCTTTCTTTTATCTGGCGATTGCA 60.142 41.667 7.38 0.00 45.35 4.08
527 538 1.953559 TTATCTGGCGATTGCAGGTC 58.046 50.000 7.38 0.00 45.35 3.85
528 539 0.249447 TATCTGGCGATTGCAGGTCG 60.249 55.000 16.42 16.42 45.35 4.79
529 540 2.244117 ATCTGGCGATTGCAGGTCGT 62.244 55.000 20.10 2.69 45.35 4.34
531 542 0.739462 CTGGCGATTGCAGGTCGTAA 60.739 55.000 20.10 10.88 45.35 3.18
532 543 1.017177 TGGCGATTGCAGGTCGTAAC 61.017 55.000 20.10 13.32 45.35 2.50
534 545 0.094730 GCGATTGCAGGTCGTAACAC 59.905 55.000 20.10 4.58 40.98 3.32
538 549 2.319136 TTGCAGGTCGTAACACTTGT 57.681 45.000 0.00 0.00 0.00 3.16
539 550 2.319136 TGCAGGTCGTAACACTTGTT 57.681 45.000 0.00 0.00 41.73 2.83
540 551 2.634600 TGCAGGTCGTAACACTTGTTT 58.365 42.857 0.00 0.00 39.31 2.83
541 552 3.011119 TGCAGGTCGTAACACTTGTTTT 58.989 40.909 0.00 0.00 39.31 2.43
542 553 4.190001 TGCAGGTCGTAACACTTGTTTTA 58.810 39.130 0.00 0.00 39.31 1.52
543 554 4.817464 TGCAGGTCGTAACACTTGTTTTAT 59.183 37.500 0.00 0.00 39.31 1.40
544 555 5.297278 TGCAGGTCGTAACACTTGTTTTATT 59.703 36.000 0.00 0.00 39.31 1.40
545 556 6.183360 TGCAGGTCGTAACACTTGTTTTATTT 60.183 34.615 0.00 0.00 39.31 1.40
546 557 6.141685 GCAGGTCGTAACACTTGTTTTATTTG 59.858 38.462 0.00 0.00 39.31 2.32
547 558 6.635239 CAGGTCGTAACACTTGTTTTATTTGG 59.365 38.462 0.00 0.00 39.31 3.28
548 559 5.400188 GGTCGTAACACTTGTTTTATTTGGC 59.600 40.000 0.00 0.00 39.31 4.52
549 560 5.972382 GTCGTAACACTTGTTTTATTTGGCA 59.028 36.000 0.00 0.00 39.31 4.92
550 561 6.639279 GTCGTAACACTTGTTTTATTTGGCAT 59.361 34.615 0.00 0.00 39.31 4.40
551 562 6.638873 TCGTAACACTTGTTTTATTTGGCATG 59.361 34.615 0.00 0.00 39.31 4.06
552 563 5.671742 AACACTTGTTTTATTTGGCATGC 57.328 34.783 9.90 9.90 33.93 4.06
553 564 4.064388 ACACTTGTTTTATTTGGCATGCC 58.936 39.130 30.54 30.54 0.00 4.40
554 565 3.123284 CACTTGTTTTATTTGGCATGCCG 59.877 43.478 30.87 14.56 39.42 5.69
555 566 2.376808 TGTTTTATTTGGCATGCCGG 57.623 45.000 30.87 0.00 39.42 6.13
556 567 1.066573 TGTTTTATTTGGCATGCCGGG 60.067 47.619 30.87 0.00 39.42 5.73
557 568 0.107945 TTTTATTTGGCATGCCGGGC 60.108 50.000 30.87 13.32 39.42 6.13
558 569 0.975040 TTTATTTGGCATGCCGGGCT 60.975 50.000 30.87 17.61 39.42 5.19
559 570 1.674764 TTATTTGGCATGCCGGGCTG 61.675 55.000 30.87 16.16 39.42 4.85
565 576 3.136123 CATGCCGGGCTGGTTCAG 61.136 66.667 21.46 0.00 41.21 3.02
566 577 3.329889 ATGCCGGGCTGGTTCAGA 61.330 61.111 21.46 0.00 41.21 3.27
567 578 3.335356 ATGCCGGGCTGGTTCAGAG 62.335 63.158 21.46 0.00 41.21 3.35
568 579 3.706373 GCCGGGCTGGTTCAGAGA 61.706 66.667 15.16 0.00 41.21 3.10
569 580 3.068881 CCGGGCTGGTTCAGAGAA 58.931 61.111 3.48 0.00 32.44 2.87
570 581 1.376037 CCGGGCTGGTTCAGAGAAC 60.376 63.158 3.48 1.37 32.44 3.01
571 582 1.371183 CGGGCTGGTTCAGAGAACA 59.629 57.895 11.51 0.00 32.44 3.18
572 583 0.250295 CGGGCTGGTTCAGAGAACAA 60.250 55.000 11.51 0.00 32.44 2.83
573 584 1.239347 GGGCTGGTTCAGAGAACAAC 58.761 55.000 11.51 1.02 32.44 3.32
574 585 1.239347 GGCTGGTTCAGAGAACAACC 58.761 55.000 11.51 5.94 42.28 3.77
579 590 2.285977 GGTTCAGAGAACAACCAACGT 58.714 47.619 11.51 0.00 41.65 3.99
580 591 2.287103 GGTTCAGAGAACAACCAACGTC 59.713 50.000 11.51 0.00 41.65 4.34
581 592 2.234300 TCAGAGAACAACCAACGTCC 57.766 50.000 0.00 0.00 0.00 4.79
582 593 0.859232 CAGAGAACAACCAACGTCCG 59.141 55.000 0.00 0.00 0.00 4.79
583 594 0.878961 AGAGAACAACCAACGTCCGC 60.879 55.000 0.00 0.00 0.00 5.54
584 595 2.154427 GAGAACAACCAACGTCCGCG 62.154 60.000 0.00 0.00 44.93 6.46
585 596 3.231324 GAACAACCAACGTCCGCGG 62.231 63.158 22.12 22.12 43.45 6.46
588 599 4.922026 AACCAACGTCCGCGGCTT 62.922 61.111 23.51 8.62 43.45 4.35
589 600 4.922026 ACCAACGTCCGCGGCTTT 62.922 61.111 23.51 12.83 43.45 3.51
590 601 2.739287 CCAACGTCCGCGGCTTTA 60.739 61.111 23.51 0.00 43.45 1.85
591 602 2.736682 CCAACGTCCGCGGCTTTAG 61.737 63.158 23.51 11.81 43.45 1.85
592 603 1.735198 CAACGTCCGCGGCTTTAGA 60.735 57.895 23.51 0.00 43.45 2.10
593 604 1.082117 CAACGTCCGCGGCTTTAGAT 61.082 55.000 23.51 0.96 43.45 1.98
594 605 0.457035 AACGTCCGCGGCTTTAGATA 59.543 50.000 23.51 0.00 43.45 1.98
595 606 0.672342 ACGTCCGCGGCTTTAGATAT 59.328 50.000 23.51 0.00 43.45 1.63
596 607 1.060713 CGTCCGCGGCTTTAGATATG 58.939 55.000 23.51 1.46 0.00 1.78
597 608 1.429463 GTCCGCGGCTTTAGATATGG 58.571 55.000 23.51 0.00 0.00 2.74
598 609 0.320374 TCCGCGGCTTTAGATATGGG 59.680 55.000 23.51 0.00 0.00 4.00
599 610 1.298859 CCGCGGCTTTAGATATGGGC 61.299 60.000 14.67 0.00 0.00 5.36
604 615 2.633488 GGCTTTAGATATGGGCGATCC 58.367 52.381 0.00 0.00 0.00 3.36
605 616 2.271800 GCTTTAGATATGGGCGATCCG 58.728 52.381 0.00 0.00 38.76 4.18
616 627 3.398920 CGATCCGCAAGCACGATT 58.601 55.556 0.00 0.00 34.06 3.34
617 628 1.273887 CGATCCGCAAGCACGATTC 59.726 57.895 0.00 0.00 34.06 2.52
618 629 1.273887 GATCCGCAAGCACGATTCG 59.726 57.895 4.14 4.14 34.06 3.34
619 630 2.686518 GATCCGCAAGCACGATTCGC 62.687 60.000 5.86 0.00 34.06 4.70
620 631 4.520846 CCGCAAGCACGATTCGCC 62.521 66.667 5.86 0.00 34.06 5.54
621 632 4.520846 CGCAAGCACGATTCGCCC 62.521 66.667 5.86 0.00 34.06 6.13
622 633 4.520846 GCAAGCACGATTCGCCCG 62.521 66.667 5.86 0.00 0.00 6.13
623 634 4.520846 CAAGCACGATTCGCCCGC 62.521 66.667 5.86 6.79 0.00 6.13
636 647 3.230245 CCCGCCCAAGCCAAACAA 61.230 61.111 0.00 0.00 34.57 2.83
637 648 2.582493 CCCGCCCAAGCCAAACAAT 61.582 57.895 0.00 0.00 34.57 2.71
638 649 1.370810 CCGCCCAAGCCAAACAATT 59.629 52.632 0.00 0.00 34.57 2.32
639 650 0.950071 CCGCCCAAGCCAAACAATTG 60.950 55.000 3.24 3.24 34.57 2.32
640 651 0.249826 CGCCCAAGCCAAACAATTGT 60.250 50.000 4.92 4.92 34.60 2.71
641 652 1.228533 GCCCAAGCCAAACAATTGTG 58.771 50.000 12.82 0.48 34.60 3.33
642 653 1.228533 CCCAAGCCAAACAATTGTGC 58.771 50.000 12.82 11.50 34.60 4.57
643 654 1.228533 CCAAGCCAAACAATTGTGCC 58.771 50.000 12.82 1.07 34.94 5.01
644 655 1.228533 CAAGCCAAACAATTGTGCCC 58.771 50.000 12.82 1.43 34.94 5.36
645 656 0.249826 AAGCCAAACAATTGTGCCCG 60.250 50.000 12.82 1.47 34.94 6.13
646 657 1.667510 GCCAAACAATTGTGCCCGG 60.668 57.895 12.82 11.14 34.60 5.73
647 658 1.005156 CCAAACAATTGTGCCCGGG 60.005 57.895 19.09 19.09 34.60 5.73
648 659 1.745264 CAAACAATTGTGCCCGGGT 59.255 52.632 24.63 0.00 0.00 5.28
649 660 0.105778 CAAACAATTGTGCCCGGGTT 59.894 50.000 24.63 4.60 0.00 4.11
650 661 0.105778 AAACAATTGTGCCCGGGTTG 59.894 50.000 24.63 20.17 0.00 3.77
651 662 1.753368 AACAATTGTGCCCGGGTTGG 61.753 55.000 24.63 7.59 37.55 3.77
660 671 3.966543 CCGGGTTGGGACTTGGCT 61.967 66.667 0.00 0.00 0.00 4.75
661 672 2.598787 CCGGGTTGGGACTTGGCTA 61.599 63.158 0.00 0.00 0.00 3.93
662 673 1.607612 CGGGTTGGGACTTGGCTAT 59.392 57.895 0.00 0.00 0.00 2.97
663 674 0.463833 CGGGTTGGGACTTGGCTATC 60.464 60.000 0.00 0.00 0.00 2.08
664 675 0.623723 GGGTTGGGACTTGGCTATCA 59.376 55.000 0.00 0.00 0.00 2.15
665 676 1.682087 GGGTTGGGACTTGGCTATCAC 60.682 57.143 0.00 0.00 0.00 3.06
666 677 1.369625 GTTGGGACTTGGCTATCACG 58.630 55.000 0.00 0.00 0.00 4.35
667 678 0.392461 TTGGGACTTGGCTATCACGC 60.392 55.000 0.00 0.00 0.00 5.34
668 679 1.264749 TGGGACTTGGCTATCACGCT 61.265 55.000 0.00 0.00 0.00 5.07
669 680 0.811616 GGGACTTGGCTATCACGCTG 60.812 60.000 0.00 0.00 0.00 5.18
670 681 0.175760 GGACTTGGCTATCACGCTGA 59.824 55.000 0.00 0.00 0.00 4.26
671 682 1.281899 GACTTGGCTATCACGCTGAC 58.718 55.000 0.00 0.00 0.00 3.51
673 684 0.179137 CTTGGCTATCACGCTGACGA 60.179 55.000 0.00 0.00 43.93 4.20
674 685 0.179137 TTGGCTATCACGCTGACGAG 60.179 55.000 0.00 0.00 43.93 4.18
675 686 1.946650 GGCTATCACGCTGACGAGC 60.947 63.158 11.80 11.80 43.93 5.03
692 703 2.816083 CGGTTCGTTGGCCGCATA 60.816 61.111 0.00 0.00 41.53 3.14
693 704 2.789249 GGTTCGTTGGCCGCATAC 59.211 61.111 0.00 0.00 36.19 2.39
694 705 2.398036 GTTCGTTGGCCGCATACG 59.602 61.111 11.77 11.77 39.67 3.06
704 715 4.494811 CGCATACGGAAGACTGCA 57.505 55.556 0.00 0.00 40.33 4.41
705 716 2.291843 CGCATACGGAAGACTGCAG 58.708 57.895 13.48 13.48 40.33 4.41
706 717 0.179137 CGCATACGGAAGACTGCAGA 60.179 55.000 23.35 0.00 40.33 4.26
707 718 1.565305 GCATACGGAAGACTGCAGAG 58.435 55.000 23.35 6.62 40.16 3.35
708 719 1.565305 CATACGGAAGACTGCAGAGC 58.435 55.000 23.35 12.03 0.00 4.09
709 720 1.134995 CATACGGAAGACTGCAGAGCA 60.135 52.381 23.35 0.00 36.92 4.26
710 721 0.243907 TACGGAAGACTGCAGAGCAC 59.756 55.000 23.35 8.82 33.79 4.40
711 722 1.739562 CGGAAGACTGCAGAGCACC 60.740 63.158 23.35 16.25 33.79 5.01
712 723 1.739562 GGAAGACTGCAGAGCACCG 60.740 63.158 23.35 0.00 33.79 4.94
713 724 2.358003 AAGACTGCAGAGCACCGC 60.358 61.111 23.35 0.33 33.79 5.68
714 725 4.731612 AGACTGCAGAGCACCGCG 62.732 66.667 23.35 0.00 33.79 6.46
715 726 4.724602 GACTGCAGAGCACCGCGA 62.725 66.667 23.35 0.00 33.79 5.87
718 729 4.377708 TGCAGAGCACCGCGACAT 62.378 61.111 8.23 0.00 31.71 3.06
719 730 3.121030 GCAGAGCACCGCGACATT 61.121 61.111 8.23 0.00 0.00 2.71
720 731 2.680913 GCAGAGCACCGCGACATTT 61.681 57.895 8.23 0.00 0.00 2.32
721 732 1.133253 CAGAGCACCGCGACATTTG 59.867 57.895 8.23 0.00 0.00 2.32
722 733 2.034879 AGAGCACCGCGACATTTGG 61.035 57.895 8.23 0.00 0.00 3.28
723 734 3.667429 GAGCACCGCGACATTTGGC 62.667 63.158 8.23 0.00 0.00 4.52
739 750 4.971125 GCGTGCGGCCTATCCTCC 62.971 72.222 0.00 0.00 34.80 4.30
740 751 3.536917 CGTGCGGCCTATCCTCCA 61.537 66.667 0.00 0.00 0.00 3.86
741 752 2.872388 CGTGCGGCCTATCCTCCAT 61.872 63.158 0.00 0.00 0.00 3.41
742 753 1.302033 GTGCGGCCTATCCTCCATG 60.302 63.158 0.00 0.00 0.00 3.66
743 754 2.359230 GCGGCCTATCCTCCATGC 60.359 66.667 0.00 0.00 0.00 4.06
744 755 2.348998 CGGCCTATCCTCCATGCC 59.651 66.667 0.00 0.00 38.74 4.40
745 756 2.519622 CGGCCTATCCTCCATGCCA 61.520 63.158 0.00 0.00 42.27 4.92
746 757 1.846261 GGCCTATCCTCCATGCCAA 59.154 57.895 0.00 0.00 41.76 4.52
747 758 0.251077 GGCCTATCCTCCATGCCAAG 60.251 60.000 0.00 0.00 41.76 3.61
748 759 0.475906 GCCTATCCTCCATGCCAAGT 59.524 55.000 0.00 0.00 0.00 3.16
749 760 1.133668 GCCTATCCTCCATGCCAAGTT 60.134 52.381 0.00 0.00 0.00 2.66
750 761 2.579873 CCTATCCTCCATGCCAAGTTG 58.420 52.381 0.00 0.00 0.00 3.16
751 762 2.579873 CTATCCTCCATGCCAAGTTGG 58.420 52.381 18.17 18.17 41.55 3.77
752 763 1.002069 ATCCTCCATGCCAAGTTGGA 58.998 50.000 26.52 11.04 40.96 3.53
756 767 2.380064 TCCATGCCAAGTTGGAGTTT 57.620 45.000 26.52 3.36 40.96 2.66
757 768 2.238521 TCCATGCCAAGTTGGAGTTTC 58.761 47.619 26.52 7.79 40.96 2.78
758 769 2.158475 TCCATGCCAAGTTGGAGTTTCT 60.158 45.455 26.52 0.00 40.96 2.52
759 770 2.629617 CCATGCCAAGTTGGAGTTTCTT 59.370 45.455 26.52 2.71 40.96 2.52
760 771 3.070015 CCATGCCAAGTTGGAGTTTCTTT 59.930 43.478 26.52 0.00 40.96 2.52
761 772 4.443315 CCATGCCAAGTTGGAGTTTCTTTT 60.443 41.667 26.52 0.00 40.96 2.27
762 773 4.385358 TGCCAAGTTGGAGTTTCTTTTC 57.615 40.909 26.52 4.04 40.96 2.29
763 774 4.023291 TGCCAAGTTGGAGTTTCTTTTCT 58.977 39.130 26.52 0.00 40.96 2.52
764 775 4.466015 TGCCAAGTTGGAGTTTCTTTTCTT 59.534 37.500 26.52 0.00 40.96 2.52
765 776 5.654650 TGCCAAGTTGGAGTTTCTTTTCTTA 59.345 36.000 26.52 0.00 40.96 2.10
766 777 6.323739 TGCCAAGTTGGAGTTTCTTTTCTTAT 59.676 34.615 26.52 0.00 40.96 1.73
767 778 7.504238 TGCCAAGTTGGAGTTTCTTTTCTTATA 59.496 33.333 26.52 0.00 40.96 0.98
768 779 8.357402 GCCAAGTTGGAGTTTCTTTTCTTATAA 58.643 33.333 26.52 0.00 40.96 0.98
769 780 9.899226 CCAAGTTGGAGTTTCTTTTCTTATAAG 57.101 33.333 17.60 6.11 40.96 1.73
799 810 4.285292 CAAGTTGCATCCATTTCTATCGC 58.715 43.478 0.00 0.00 0.00 4.58
800 811 2.880890 AGTTGCATCCATTTCTATCGCC 59.119 45.455 0.00 0.00 0.00 5.54
802 813 2.221169 TGCATCCATTTCTATCGCCAC 58.779 47.619 0.00 0.00 0.00 5.01
803 814 2.221169 GCATCCATTTCTATCGCCACA 58.779 47.619 0.00 0.00 0.00 4.17
805 816 3.304257 GCATCCATTTCTATCGCCACAAG 60.304 47.826 0.00 0.00 0.00 3.16
806 817 2.917933 TCCATTTCTATCGCCACAAGG 58.082 47.619 0.00 0.00 38.23 3.61
828 1072 4.988540 GGTTTACCTGCCAATGAGAAAAAC 59.011 41.667 0.00 0.00 0.00 2.43
830 1074 6.223120 GTTTACCTGCCAATGAGAAAAACAT 58.777 36.000 0.00 0.00 0.00 2.71
832 1076 7.716799 TTACCTGCCAATGAGAAAAACATAT 57.283 32.000 0.00 0.00 0.00 1.78
834 1078 6.400568 ACCTGCCAATGAGAAAAACATATTG 58.599 36.000 0.00 0.00 0.00 1.90
835 1079 6.014327 ACCTGCCAATGAGAAAAACATATTGT 60.014 34.615 0.00 0.00 0.00 2.71
836 1080 6.875195 CCTGCCAATGAGAAAAACATATTGTT 59.125 34.615 0.00 0.00 43.41 2.83
837 1081 8.034215 CCTGCCAATGAGAAAAACATATTGTTA 58.966 33.333 0.00 0.00 40.14 2.41
838 1082 9.421806 CTGCCAATGAGAAAAACATATTGTTAA 57.578 29.630 0.00 0.00 40.14 2.01
843 1087 9.801873 AATGAGAAAAACATATTGTTAATCCGG 57.198 29.630 0.00 0.00 40.14 5.14
844 1088 7.254852 TGAGAAAAACATATTGTTAATCCGGC 58.745 34.615 0.00 0.00 40.14 6.13
845 1089 6.262601 AGAAAAACATATTGTTAATCCGGCG 58.737 36.000 0.00 0.00 40.14 6.46
846 1090 4.561735 AAACATATTGTTAATCCGGCGG 57.438 40.909 22.51 22.51 40.14 6.13
851 1118 2.027003 TTGTTAATCCGGCGGTAAGG 57.973 50.000 27.32 0.00 0.00 2.69
860 1127 2.125106 GCGGTAAGGCCAGGTCAG 60.125 66.667 5.01 0.00 36.97 3.51
861 1128 2.955881 GCGGTAAGGCCAGGTCAGT 61.956 63.158 5.01 0.00 36.97 3.41
863 1130 1.602771 GGTAAGGCCAGGTCAGTCC 59.397 63.158 5.01 0.00 37.17 3.85
867 1134 0.178990 AAGGCCAGGTCAGTCCAAAC 60.179 55.000 5.01 0.00 39.02 2.93
871 1138 1.597742 CCAGGTCAGTCCAAACACTG 58.402 55.000 0.00 0.00 44.61 3.66
882 1149 4.282195 AGTCCAAACACTGAAAACACCAAA 59.718 37.500 0.00 0.00 0.00 3.28
883 1150 4.387559 GTCCAAACACTGAAAACACCAAAC 59.612 41.667 0.00 0.00 0.00 2.93
886 1153 5.237344 CCAAACACTGAAAACACCAAACAAA 59.763 36.000 0.00 0.00 0.00 2.83
887 1154 6.072783 CCAAACACTGAAAACACCAAACAAAT 60.073 34.615 0.00 0.00 0.00 2.32
888 1155 6.720012 AACACTGAAAACACCAAACAAATC 57.280 33.333 0.00 0.00 0.00 2.17
889 1156 5.788450 ACACTGAAAACACCAAACAAATCA 58.212 33.333 0.00 0.00 0.00 2.57
892 1159 8.037758 ACACTGAAAACACCAAACAAATCATAA 58.962 29.630 0.00 0.00 0.00 1.90
914 1181 5.585820 AAAAAGGGATCGAGAGACTAGAC 57.414 43.478 0.00 0.00 46.97 2.59
915 1182 2.943036 AGGGATCGAGAGACTAGACC 57.057 55.000 0.00 0.00 46.97 3.85
916 1183 1.071071 AGGGATCGAGAGACTAGACCG 59.929 57.143 0.00 0.00 46.97 4.79
917 1184 1.202675 GGGATCGAGAGACTAGACCGT 60.203 57.143 0.00 0.00 46.97 4.83
918 1185 1.868498 GGATCGAGAGACTAGACCGTG 59.132 57.143 0.00 0.00 46.97 4.94
919 1186 2.553086 GATCGAGAGACTAGACCGTGT 58.447 52.381 0.00 0.00 46.97 4.49
923 1190 2.225963 CGAGAGACTAGACCGTGTTTGT 59.774 50.000 0.00 0.00 0.00 2.83
927 1194 3.714391 AGACTAGACCGTGTTTGTTGTC 58.286 45.455 0.00 0.00 0.00 3.18
931 1198 3.261981 AGACCGTGTTTGTTGTCTTCT 57.738 42.857 0.00 0.00 34.53 2.85
942 1209 9.151471 GTGTTTGTTGTCTTCTCTGCTATATAA 57.849 33.333 0.00 0.00 0.00 0.98
943 1210 9.719355 TGTTTGTTGTCTTCTCTGCTATATAAA 57.281 29.630 0.00 0.00 0.00 1.40
954 1221 7.508687 TCTCTGCTATATAAATTCACAAGCCA 58.491 34.615 0.00 0.00 0.00 4.75
959 1226 7.652909 TGCTATATAAATTCACAAGCCATTTGC 59.347 33.333 0.00 0.00 40.59 3.68
983 1260 5.064962 CAGTTTCTTGCTTCCAAAAATTGCA 59.935 36.000 0.00 0.00 0.00 4.08
984 1261 5.065090 AGTTTCTTGCTTCCAAAAATTGCAC 59.935 36.000 0.00 0.00 33.13 4.57
986 1263 2.879002 TGCTTCCAAAAATTGCACGA 57.121 40.000 0.00 0.00 0.00 4.35
989 1266 2.220824 GCTTCCAAAAATTGCACGAACC 59.779 45.455 0.00 0.00 0.00 3.62
992 1269 1.269309 CCAAAAATTGCACGAACCGGA 60.269 47.619 9.46 0.00 0.00 5.14
993 1270 2.609244 CCAAAAATTGCACGAACCGGAT 60.609 45.455 9.46 0.00 0.00 4.18
995 1272 3.757745 AAAATTGCACGAACCGGATAG 57.242 42.857 9.46 0.00 0.00 2.08
1016 1293 3.324846 AGAACCATGGCGATCAGCTATTA 59.675 43.478 13.04 0.00 45.20 0.98
1017 1294 3.045601 ACCATGGCGATCAGCTATTAC 57.954 47.619 13.04 0.00 45.20 1.89
1021 1298 2.094494 ATGGCGATCAGCTATTACTCGG 60.094 50.000 8.94 0.00 45.20 4.63
1023 1300 1.335964 GCGATCAGCTATTACTCGGCA 60.336 52.381 0.00 0.00 44.04 5.69
1024 1301 2.320367 CGATCAGCTATTACTCGGCAC 58.680 52.381 0.00 0.00 0.00 5.01
1025 1302 2.287608 CGATCAGCTATTACTCGGCACA 60.288 50.000 0.00 0.00 0.00 4.57
1026 1303 3.612717 CGATCAGCTATTACTCGGCACAT 60.613 47.826 0.00 0.00 0.00 3.21
1027 1304 3.097877 TCAGCTATTACTCGGCACATG 57.902 47.619 0.00 0.00 0.00 3.21
1036 1322 0.387622 CTCGGCACATGCAAAACTGG 60.388 55.000 6.15 0.00 44.36 4.00
1045 1331 1.927487 TGCAAAACTGGCATGGATCT 58.073 45.000 0.00 0.00 36.11 2.75
1047 1333 2.633967 TGCAAAACTGGCATGGATCTTT 59.366 40.909 0.00 0.00 36.11 2.52
1068 1354 1.378250 GCTGCTGCTCATCCTGGTT 60.378 57.895 8.53 0.00 36.03 3.67
1070 1356 1.661341 CTGCTGCTCATCCTGGTTAC 58.339 55.000 0.00 0.00 0.00 2.50
1089 1375 0.982673 CGACGACGATTCAAGTCCAC 59.017 55.000 0.00 0.00 42.66 4.02
1090 1376 1.401148 CGACGACGATTCAAGTCCACT 60.401 52.381 0.00 0.00 42.66 4.00
1099 1385 0.681733 TCAAGTCCACTGCCAGTCTC 59.318 55.000 0.00 0.00 0.00 3.36
1102 1388 0.902516 AGTCCACTGCCAGTCTCCTC 60.903 60.000 0.00 0.00 0.00 3.71
1105 1391 1.595882 CACTGCCAGTCTCCTCCTG 59.404 63.158 0.00 0.00 0.00 3.86
1116 1402 7.648039 CCAGTCTCCTCCTGGTAATATATAC 57.352 44.000 0.00 0.00 43.73 1.47
1119 1407 8.744652 CAGTCTCCTCCTGGTAATATATACAAG 58.255 40.741 0.00 0.00 34.23 3.16
1122 1410 6.327781 TCCTCCTGGTAATATATACAAGCCA 58.672 40.000 0.00 0.00 34.23 4.75
1127 1415 7.236640 TCCTGGTAATATATACAAGCCATGTCA 59.763 37.037 0.00 0.00 42.70 3.58
1146 1434 6.642733 TGTCATCCTATCTTTTCCCTTCTT 57.357 37.500 0.00 0.00 0.00 2.52
1155 1448 2.113860 TTTCCCTTCTTGATCCTGCG 57.886 50.000 0.00 0.00 0.00 5.18
1163 1456 1.831106 TCTTGATCCTGCGCCTCTTTA 59.169 47.619 4.18 0.00 0.00 1.85
1167 1460 0.107165 ATCCTGCGCCTCTTTAACCC 60.107 55.000 4.18 0.00 0.00 4.11
1174 1467 0.328258 GCCTCTTTAACCCCTGCTCA 59.672 55.000 0.00 0.00 0.00 4.26
1194 1487 0.809385 ATCTGCATGCACAGTTCAGC 59.191 50.000 18.46 0.00 38.84 4.26
1196 1489 1.002315 TCTGCATGCACAGTTCAGCTA 59.998 47.619 18.46 0.00 38.84 3.32
1219 1519 8.524870 CTAACTTTAGCATGCAATTTCACTTT 57.475 30.769 21.98 3.54 0.00 2.66
1231 1537 8.801715 TGCAATTTCACTTTACTGAAATCTTC 57.198 30.769 7.43 2.45 45.91 2.87
1279 1595 2.512885 CGCACAAGTCATGATCTTTGC 58.487 47.619 19.85 19.85 0.00 3.68
1289 1605 7.731882 AGTCATGATCTTTGCATAGATCTTG 57.268 36.000 33.51 33.51 46.94 3.02
1290 1606 6.711194 AGTCATGATCTTTGCATAGATCTTGG 59.289 38.462 35.52 27.19 46.45 3.61
1292 1608 7.390996 GTCATGATCTTTGCATAGATCTTGGAT 59.609 37.037 35.52 24.53 46.45 3.41
1293 1609 7.942894 TCATGATCTTTGCATAGATCTTGGATT 59.057 33.333 35.52 19.75 46.45 3.01
1303 1619 6.319658 GCATAGATCTTGGATTCCTGAAACAA 59.680 38.462 0.00 0.00 0.00 2.83
1307 1623 5.726980 TCTTGGATTCCTGAAACAAATGG 57.273 39.130 3.95 0.00 0.00 3.16
1308 1624 4.527816 TCTTGGATTCCTGAAACAAATGGG 59.472 41.667 3.95 0.00 0.00 4.00
1310 1626 4.686891 TGGATTCCTGAAACAAATGGGAT 58.313 39.130 3.95 0.00 0.00 3.85
1425 1752 3.007940 TCGATCCTGACAGTGGATTTGTT 59.992 43.478 0.93 0.00 43.68 2.83
1428 1755 4.163441 TCCTGACAGTGGATTTGTTGAA 57.837 40.909 0.93 0.00 0.00 2.69
1437 1764 5.068460 CAGTGGATTTGTTGAAGGTGGTTTA 59.932 40.000 0.00 0.00 0.00 2.01
1439 1766 6.155393 AGTGGATTTGTTGAAGGTGGTTTAAA 59.845 34.615 0.00 0.00 0.00 1.52
1443 1770 7.497579 GGATTTGTTGAAGGTGGTTTAAACAAT 59.502 33.333 19.57 6.30 36.06 2.71
1515 1845 3.468326 GAGCTTCCCCGATGGCTCC 62.468 68.421 0.00 0.00 43.51 4.70
1556 1886 4.690719 CACCGCCGGCACCAAGTA 62.691 66.667 28.98 0.00 0.00 2.24
1607 9738 5.212194 CAACTACGATGGGTTGAACAAAAG 58.788 41.667 0.00 0.00 43.61 2.27
1654 9785 1.067142 GGCTCCATATCGGCGTCAATA 60.067 52.381 6.85 0.00 33.14 1.90
1809 9940 0.108585 TGGAGTTGAGGCCACTTGAC 59.891 55.000 5.01 0.00 0.00 3.18
1879 10010 6.885952 TTAAACGGATCAGATTTGGTGAAA 57.114 33.333 0.00 0.00 0.00 2.69
1907 10038 8.950210 CACTGAATTTATCACAAGGTAAGACAT 58.050 33.333 0.00 0.00 33.47 3.06
1913 10044 2.371841 TCACAAGGTAAGACATGGCTGT 59.628 45.455 0.00 0.00 38.67 4.40
1956 10087 8.295288 GGATTTGATCTTAATTATGCCTGACAG 58.705 37.037 0.00 0.00 0.00 3.51
1971 10110 4.023536 GCCTGACAGTGGTTTTAAATTCGA 60.024 41.667 0.93 0.00 0.00 3.71
1972 10111 5.335661 GCCTGACAGTGGTTTTAAATTCGAT 60.336 40.000 0.93 0.00 0.00 3.59
1983 10122 7.027161 GGTTTTAAATTCGATTTGCTAGCTCA 58.973 34.615 17.23 2.23 33.82 4.26
2016 10157 4.273318 AGTGTTTGCTCCTTTCTGTTTCT 58.727 39.130 0.00 0.00 0.00 2.52
2023 10165 4.704540 TGCTCCTTTCTGTTTCTTGAAACA 59.295 37.500 22.44 22.44 40.05 2.83
2024 10166 5.037385 GCTCCTTTCTGTTTCTTGAAACAC 58.963 41.667 20.75 8.50 37.71 3.32
2044 10186 8.532977 AAACACGCAATTGCTTCTAATAAAAT 57.467 26.923 26.86 0.28 39.32 1.82
2074 10216 7.842525 GTCATGTTAATGTGACAAGAAGTTG 57.157 36.000 14.66 0.00 43.20 3.16
2076 10218 5.766150 TGTTAATGTGACAAGAAGTTGGG 57.234 39.130 0.00 0.00 38.07 4.12
2078 10220 2.664402 ATGTGACAAGAAGTTGGGCT 57.336 45.000 0.00 0.00 38.07 5.19
2079 10221 2.435372 TGTGACAAGAAGTTGGGCTT 57.565 45.000 0.00 0.00 38.07 4.35
2081 10223 1.032014 TGACAAGAAGTTGGGCTTGC 58.968 50.000 0.00 0.00 43.99 4.01
2082 10224 0.315251 GACAAGAAGTTGGGCTTGCC 59.685 55.000 2.49 2.49 43.99 4.52
2083 10225 1.115326 ACAAGAAGTTGGGCTTGCCC 61.115 55.000 22.91 22.91 43.99 5.36
2088 10230 3.223589 GTTGGGCTTGCCCGTTGT 61.224 61.111 23.81 0.00 0.00 3.32
2090 10232 3.723097 TTGGGCTTGCCCGTTGTCA 62.723 57.895 23.81 4.18 0.00 3.58
2097 10239 0.034574 TTGCCCGTTGTCATGGCTAT 60.035 50.000 0.00 0.00 45.56 2.97
2099 10241 0.381801 GCCCGTTGTCATGGCTATTG 59.618 55.000 0.00 0.00 42.01 1.90
2116 10258 6.864560 GCTATTGCCCTTTAAGTAAAAACG 57.135 37.500 0.00 0.00 0.00 3.60
2117 10259 6.614160 GCTATTGCCCTTTAAGTAAAAACGA 58.386 36.000 0.00 0.00 0.00 3.85
2121 10263 8.719560 ATTGCCCTTTAAGTAAAAACGAAAAA 57.280 26.923 0.00 0.00 0.00 1.94
2122 10264 7.758613 TGCCCTTTAAGTAAAAACGAAAAAG 57.241 32.000 0.00 0.00 0.00 2.27
2123 10265 7.321908 TGCCCTTTAAGTAAAAACGAAAAAGT 58.678 30.769 0.00 0.00 0.00 2.66
2124 10266 8.465201 TGCCCTTTAAGTAAAAACGAAAAAGTA 58.535 29.630 0.00 0.00 0.00 2.24
2125 10267 8.961092 GCCCTTTAAGTAAAAACGAAAAAGTAG 58.039 33.333 0.00 0.00 0.00 2.57
2135 10277 7.703298 AAAACGAAAAAGTAGTTTATTGGGC 57.297 32.000 0.00 0.00 37.13 5.36
2136 10278 6.644248 AACGAAAAAGTAGTTTATTGGGCT 57.356 33.333 0.00 0.00 0.00 5.19
2138 10280 7.373778 ACGAAAAAGTAGTTTATTGGGCTAG 57.626 36.000 0.00 0.00 0.00 3.42
2139 10281 6.938596 ACGAAAAAGTAGTTTATTGGGCTAGT 59.061 34.615 0.00 0.00 0.00 2.57
2140 10282 7.446319 ACGAAAAAGTAGTTTATTGGGCTAGTT 59.554 33.333 0.00 0.00 31.82 2.24
2147 10289 9.842775 AGTAGTTTATTGGGCTAGTTATTTACC 57.157 33.333 0.00 0.00 0.00 2.85
2148 10290 9.842775 GTAGTTTATTGGGCTAGTTATTTACCT 57.157 33.333 0.00 0.00 0.00 3.08
2149 10291 8.747538 AGTTTATTGGGCTAGTTATTTACCTG 57.252 34.615 0.00 0.00 0.00 4.00
2153 10295 7.640597 ATTGGGCTAGTTATTTACCTGTTTC 57.359 36.000 0.00 0.00 0.00 2.78
2154 10296 5.503002 TGGGCTAGTTATTTACCTGTTTCC 58.497 41.667 0.00 0.00 0.00 3.13
2155 10297 5.014333 TGGGCTAGTTATTTACCTGTTTCCA 59.986 40.000 0.00 0.00 0.00 3.53
2157 10299 5.356190 GGCTAGTTATTTACCTGTTTCCACC 59.644 44.000 0.00 0.00 0.00 4.61
2162 10304 6.489022 AGTTATTTACCTGTTTCCACCTTGTC 59.511 38.462 0.00 0.00 0.00 3.18
2163 10305 4.513406 TTTACCTGTTTCCACCTTGTCT 57.487 40.909 0.00 0.00 0.00 3.41
2184 10353 8.334263 TGTCTTTTGTGTGCAATGAAGATATA 57.666 30.769 0.00 0.00 35.32 0.86
2185 10354 8.791675 TGTCTTTTGTGTGCAATGAAGATATAA 58.208 29.630 0.00 0.00 35.32 0.98
2221 10390 2.539081 GGTTCTGGGAGGCCTGGTT 61.539 63.158 12.00 0.00 0.00 3.67
2222 10391 1.303643 GTTCTGGGAGGCCTGGTTG 60.304 63.158 12.00 0.00 0.00 3.77
2225 10394 1.604593 CTGGGAGGCCTGGTTGTTG 60.605 63.158 12.00 0.00 0.00 3.33
2247 10428 0.537188 CACGTACCCTTGGATCAGCT 59.463 55.000 0.00 0.00 0.00 4.24
2282 10463 3.155167 GTGAGGAGGCTACCCGGG 61.155 72.222 22.25 22.25 35.76 5.73
2327 10508 2.071262 CATCCTCCAGCAGGCCTCT 61.071 63.158 0.00 0.00 43.08 3.69
2400 10581 1.672356 CTGGACGCCAAGAACCTGG 60.672 63.158 0.00 0.00 39.71 4.45
2462 10643 1.207791 ACCCGAGCAGGAGATTTGAT 58.792 50.000 0.00 0.00 45.00 2.57
2507 10688 2.182030 CCAGACTTCTCGCCGTCC 59.818 66.667 0.00 0.00 0.00 4.79
2689 10875 5.123820 CCAACGATGGTGAGTTCAATGTATT 59.876 40.000 3.02 0.00 42.18 1.89
2690 10876 6.315144 CCAACGATGGTGAGTTCAATGTATTA 59.685 38.462 3.02 0.00 42.18 0.98
2691 10877 7.401860 CAACGATGGTGAGTTCAATGTATTAG 58.598 38.462 0.00 0.00 0.00 1.73
2692 10878 5.523916 ACGATGGTGAGTTCAATGTATTAGC 59.476 40.000 0.00 0.00 0.00 3.09
2741 11116 1.600957 CGTGGCAGATTCACATGATCC 59.399 52.381 0.00 0.00 35.03 3.36
2852 11602 6.731292 AATACATATATGAGCGCCCATAGA 57.269 37.500 19.63 13.03 33.08 1.98
2879 11632 9.443283 CAACATATACAGCTTTCTTTATTCTGC 57.557 33.333 0.00 0.00 0.00 4.26
2904 11657 8.650714 GCTCATATTTGTTTCCATTGTCTTTTC 58.349 33.333 0.00 0.00 0.00 2.29
3012 11769 5.600749 AGAGAGTATTCCTGGGAAGGTTTA 58.399 41.667 8.11 0.00 37.56 2.01
3187 12184 7.436933 TCAGTCACATATCTTACTGGCTAATG 58.563 38.462 0.00 0.00 39.80 1.90
3189 12186 8.360390 CAGTCACATATCTTACTGGCTAATGTA 58.640 37.037 0.00 0.00 36.53 2.29
3190 12187 8.924303 AGTCACATATCTTACTGGCTAATGTAA 58.076 33.333 0.00 0.00 0.00 2.41
3193 12190 9.494271 CACATATCTTACTGGCTAATGTAATGT 57.506 33.333 0.00 0.00 0.00 2.71
3194 12191 9.494271 ACATATCTTACTGGCTAATGTAATGTG 57.506 33.333 0.00 0.00 0.00 3.21
3195 12192 6.867662 ATCTTACTGGCTAATGTAATGTGC 57.132 37.500 0.00 0.00 0.00 4.57
3196 12193 5.989477 TCTTACTGGCTAATGTAATGTGCT 58.011 37.500 0.00 0.00 0.00 4.40
3197 12194 6.414732 TCTTACTGGCTAATGTAATGTGCTT 58.585 36.000 0.00 0.00 0.00 3.91
3198 12195 6.538742 TCTTACTGGCTAATGTAATGTGCTTC 59.461 38.462 0.00 0.00 0.00 3.86
3199 12196 4.588899 ACTGGCTAATGTAATGTGCTTCA 58.411 39.130 0.00 0.00 0.00 3.02
3200 12197 5.009631 ACTGGCTAATGTAATGTGCTTCAA 58.990 37.500 0.00 0.00 0.00 2.69
3201 12198 5.476599 ACTGGCTAATGTAATGTGCTTCAAA 59.523 36.000 0.00 0.00 0.00 2.69
3202 12199 5.953183 TGGCTAATGTAATGTGCTTCAAAG 58.047 37.500 0.00 0.00 0.00 2.77
3203 12200 5.105797 TGGCTAATGTAATGTGCTTCAAAGG 60.106 40.000 0.00 0.00 0.00 3.11
3204 12201 5.105756 GGCTAATGTAATGTGCTTCAAAGGT 60.106 40.000 0.00 0.00 0.00 3.50
3205 12202 6.389906 GCTAATGTAATGTGCTTCAAAGGTT 58.610 36.000 0.00 0.00 0.00 3.50
3385 12404 0.804989 GCGGACTGAAAGGTGGATTG 59.195 55.000 0.00 0.00 39.30 2.67
3487 12510 8.233868 TGTTATTATTTTGACATCCTTGTGACG 58.766 33.333 0.00 0.00 35.79 4.35
3491 12514 5.412526 TTTTGACATCCTTGTGACGTAAC 57.587 39.130 0.00 0.00 35.79 2.50
3710 12764 7.170658 CCGGATTCTATTCTTCAAAGATCTCAC 59.829 40.741 0.00 0.00 34.49 3.51
3740 12796 3.888323 TGCTTGACTTAAGGTTTGCATGA 59.112 39.130 7.53 0.00 36.87 3.07
3847 12935 9.486497 AGAATGTATCTAGCACAGAAATACATG 57.514 33.333 10.20 0.00 38.01 3.21
4020 13130 5.951747 ACAAATATGCCACACTTTACCAGAT 59.048 36.000 0.00 0.00 0.00 2.90
4075 13355 7.172703 GCCACAGTTTAGTTAGTGTCATACTTT 59.827 37.037 0.00 0.00 40.89 2.66
4348 14150 3.363627 TCATCAATGCAATAGGTGGCAA 58.636 40.909 0.00 0.00 44.20 4.52
4365 14167 2.354199 GGCAAACATAAGAGAGCAGCTC 59.646 50.000 15.25 15.25 44.29 4.09
4519 14321 8.451908 AGCTGAAACTCATAACTAACAACTTT 57.548 30.769 0.00 0.00 0.00 2.66
4677 14480 1.909700 ACCAACTAGGCCACAACATG 58.090 50.000 5.01 0.00 43.14 3.21
4696 14499 8.967218 ACAACATGACATTCTTCAATAAAAACG 58.033 29.630 0.00 0.00 0.00 3.60
4697 14500 8.967218 CAACATGACATTCTTCAATAAAAACGT 58.033 29.630 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.179142 GTTTCCTACGGCGAGAGACC 60.179 60.000 16.62 0.00 33.32 3.85
34 35 0.522915 CGTTTCCTACGGCGAGAGAC 60.523 60.000 16.62 11.50 46.42 3.36
35 36 1.798735 CGTTTCCTACGGCGAGAGA 59.201 57.895 16.62 3.29 46.42 3.10
36 37 4.379221 CGTTTCCTACGGCGAGAG 57.621 61.111 16.62 10.44 46.42 3.20
44 45 1.066136 GACCGAAGTGCGTTTCCTAC 58.934 55.000 0.00 0.00 38.67 3.18
45 46 0.037975 GGACCGAAGTGCGTTTCCTA 60.038 55.000 1.76 0.00 37.32 2.94
46 47 1.301479 GGACCGAAGTGCGTTTCCT 60.301 57.895 1.76 0.00 37.32 3.36
47 48 2.322830 GGGACCGAAGTGCGTTTCC 61.323 63.158 0.42 0.42 38.76 3.13
48 49 2.664436 CGGGACCGAAGTGCGTTTC 61.664 63.158 4.40 0.00 42.83 2.78
49 50 2.663852 CGGGACCGAAGTGCGTTT 60.664 61.111 4.40 0.00 42.83 3.60
50 51 3.920196 ACGGGACCGAAGTGCGTT 61.920 61.111 18.80 0.00 42.83 4.84
51 52 4.657824 CACGGGACCGAAGTGCGT 62.658 66.667 18.80 1.59 42.83 5.24
73 74 2.579787 GTCACCGCGAGATGACGG 60.580 66.667 8.23 0.00 46.24 4.79
76 77 0.034198 TTTTGGTCACCGCGAGATGA 59.966 50.000 8.23 5.51 0.00 2.92
77 78 1.086696 ATTTTGGTCACCGCGAGATG 58.913 50.000 8.23 2.64 0.00 2.90
78 79 1.086696 CATTTTGGTCACCGCGAGAT 58.913 50.000 8.23 0.00 0.00 2.75
79 80 0.034198 TCATTTTGGTCACCGCGAGA 59.966 50.000 8.23 1.43 0.00 4.04
80 81 0.165944 GTCATTTTGGTCACCGCGAG 59.834 55.000 8.23 0.00 0.00 5.03
81 82 1.561717 CGTCATTTTGGTCACCGCGA 61.562 55.000 8.23 0.00 0.00 5.87
82 83 1.154488 CGTCATTTTGGTCACCGCG 60.154 57.895 0.00 0.00 0.00 6.46
83 84 1.209127 CCGTCATTTTGGTCACCGC 59.791 57.895 0.00 0.00 0.00 5.68
84 85 1.209127 GCCGTCATTTTGGTCACCG 59.791 57.895 0.00 0.00 0.00 4.94
85 86 1.209127 CGCCGTCATTTTGGTCACC 59.791 57.895 0.00 0.00 0.00 4.02
86 87 0.110373 GACGCCGTCATTTTGGTCAC 60.110 55.000 13.23 0.00 32.09 3.67
87 88 1.561717 CGACGCCGTCATTTTGGTCA 61.562 55.000 18.40 0.00 32.09 4.02
88 89 1.131826 CGACGCCGTCATTTTGGTC 59.868 57.895 18.40 0.00 32.09 4.02
89 90 2.961669 GCGACGCCGTCATTTTGGT 61.962 57.895 18.40 0.00 38.24 3.67
90 91 2.202298 GCGACGCCGTCATTTTGG 60.202 61.111 18.40 0.38 38.24 3.28
91 92 1.509787 CTGCGACGCCGTCATTTTG 60.510 57.895 18.40 1.15 38.24 2.44
92 93 2.860293 CTGCGACGCCGTCATTTT 59.140 55.556 18.40 0.00 38.24 1.82
93 94 3.788766 GCTGCGACGCCGTCATTT 61.789 61.111 18.40 0.00 38.24 2.32
127 128 1.935065 GAGCAAGACGTCGACAAGCG 61.935 60.000 17.16 3.75 42.69 4.68
133 134 2.126850 CAGCGAGCAAGACGTCGA 60.127 61.111 10.46 0.00 38.50 4.20
153 154 4.218578 ATCAGCTCCGCGCCTCAG 62.219 66.667 0.00 0.00 40.39 3.35
154 155 4.212913 GATCAGCTCCGCGCCTCA 62.213 66.667 0.00 0.00 40.39 3.86
166 167 1.934956 CGAGAACCGCGTCGATCAG 60.935 63.158 10.93 0.00 38.50 2.90
169 170 2.099831 GTCGAGAACCGCGTCGAT 59.900 61.111 20.13 0.00 46.22 3.59
171 172 2.816692 TTACGTCGAGAACCGCGTCG 62.817 60.000 10.23 10.23 44.79 5.12
206 208 1.565067 AGTTTGGGGTAGGTCCGTAG 58.435 55.000 0.00 0.00 37.00 3.51
207 209 2.311542 TCTAGTTTGGGGTAGGTCCGTA 59.688 50.000 0.00 0.00 37.00 4.02
208 210 1.077663 TCTAGTTTGGGGTAGGTCCGT 59.922 52.381 0.00 0.00 37.00 4.69
209 211 1.856629 TCTAGTTTGGGGTAGGTCCG 58.143 55.000 0.00 0.00 37.00 4.79
210 212 3.778629 TCAATCTAGTTTGGGGTAGGTCC 59.221 47.826 12.51 0.00 0.00 4.46
211 213 5.431179 TTCAATCTAGTTTGGGGTAGGTC 57.569 43.478 12.51 0.00 0.00 3.85
216 218 4.463050 TGGTTTCAATCTAGTTTGGGGT 57.537 40.909 12.51 0.00 0.00 4.95
225 227 6.072175 CGGGATTCAAACTTGGTTTCAATCTA 60.072 38.462 15.38 0.00 40.85 1.98
242 244 3.007506 ACTGTATGTGTGTTCGGGATTCA 59.992 43.478 0.00 0.00 0.00 2.57
243 245 3.596214 ACTGTATGTGTGTTCGGGATTC 58.404 45.455 0.00 0.00 0.00 2.52
244 246 3.596214 GACTGTATGTGTGTTCGGGATT 58.404 45.455 0.00 0.00 0.00 3.01
253 255 2.452813 GGCGGCGACTGTATGTGTG 61.453 63.158 12.98 0.00 0.00 3.82
255 257 2.890474 GGGCGGCGACTGTATGTG 60.890 66.667 14.66 0.00 0.00 3.21
271 273 0.249073 CAGGTAGAGTTCATCGGCGG 60.249 60.000 7.21 0.00 0.00 6.13
275 277 1.115467 AGGGCAGGTAGAGTTCATCG 58.885 55.000 0.00 0.00 0.00 3.84
276 278 1.474143 GCAGGGCAGGTAGAGTTCATC 60.474 57.143 0.00 0.00 0.00 2.92
282 284 1.566298 AAAGGGCAGGGCAGGTAGAG 61.566 60.000 0.00 0.00 0.00 2.43
327 335 1.099879 GCATGTGGAGGATGGCACTC 61.100 60.000 0.00 0.00 0.00 3.51
343 351 0.179181 CAAGTTTCATCAGCGCGCAT 60.179 50.000 35.10 16.82 0.00 4.73
345 353 0.097674 ATCAAGTTTCATCAGCGCGC 59.902 50.000 26.66 26.66 0.00 6.86
348 356 5.576774 TGTAGTACATCAAGTTTCATCAGCG 59.423 40.000 0.00 0.00 0.00 5.18
367 375 9.185680 GGGTTCTTATTATTTTCACCATGTAGT 57.814 33.333 0.00 0.00 0.00 2.73
369 377 8.047911 TCGGGTTCTTATTATTTTCACCATGTA 58.952 33.333 0.00 0.00 0.00 2.29
370 378 6.887545 TCGGGTTCTTATTATTTTCACCATGT 59.112 34.615 0.00 0.00 0.00 3.21
379 387 9.801873 CAAATGTCAATCGGGTTCTTATTATTT 57.198 29.630 0.00 0.00 0.00 1.40
382 390 8.044309 TCTCAAATGTCAATCGGGTTCTTATTA 58.956 33.333 0.00 0.00 0.00 0.98
388 396 3.127030 GGTCTCAAATGTCAATCGGGTTC 59.873 47.826 0.00 0.00 0.00 3.62
391 399 1.665679 CGGTCTCAAATGTCAATCGGG 59.334 52.381 0.00 0.00 0.00 5.14
393 401 2.348666 GGTCGGTCTCAAATGTCAATCG 59.651 50.000 0.00 0.00 0.00 3.34
394 402 2.348666 CGGTCGGTCTCAAATGTCAATC 59.651 50.000 0.00 0.00 0.00 2.67
437 448 2.710724 GAACGACCGGGTGTGAGCTT 62.711 60.000 3.30 0.00 0.00 3.74
439 450 2.710724 AAGAACGACCGGGTGTGAGC 62.711 60.000 3.30 0.00 0.00 4.26
464 475 3.117372 CGACCGATTCGCTAGGGT 58.883 61.111 6.70 0.00 41.87 4.34
492 503 5.047731 GCCAGATAAAAGAAAGGAGCAAGTT 60.048 40.000 0.00 0.00 0.00 2.66
498 509 5.731686 GCAATCGCCAGATAAAAGAAAGGAG 60.732 44.000 0.00 0.00 35.74 3.69
505 516 2.684881 ACCTGCAATCGCCAGATAAAAG 59.315 45.455 0.00 0.00 35.74 2.27
508 519 1.806247 CGACCTGCAATCGCCAGATAA 60.806 52.381 7.06 0.00 35.74 1.75
510 521 1.522355 CGACCTGCAATCGCCAGAT 60.522 57.895 7.06 0.00 39.12 2.90
512 523 0.739462 TTACGACCTGCAATCGCCAG 60.739 55.000 17.50 0.00 43.46 4.85
513 524 1.017177 GTTACGACCTGCAATCGCCA 61.017 55.000 17.50 5.61 43.46 5.69
514 525 1.017177 TGTTACGACCTGCAATCGCC 61.017 55.000 17.50 8.38 43.46 5.54
516 527 1.710013 AGTGTTACGACCTGCAATCG 58.290 50.000 16.32 16.32 45.17 3.34
518 529 2.846193 ACAAGTGTTACGACCTGCAAT 58.154 42.857 0.00 0.00 0.00 3.56
519 530 2.319136 ACAAGTGTTACGACCTGCAA 57.681 45.000 0.00 0.00 0.00 4.08
521 532 3.685836 AAAACAAGTGTTACGACCTGC 57.314 42.857 0.00 0.00 37.25 4.85
522 533 6.635239 CCAAATAAAACAAGTGTTACGACCTG 59.365 38.462 0.00 0.00 37.25 4.00
523 534 6.731164 CCAAATAAAACAAGTGTTACGACCT 58.269 36.000 0.00 0.00 37.25 3.85
527 538 6.615418 GCATGCCAAATAAAACAAGTGTTACG 60.615 38.462 6.36 0.00 37.25 3.18
528 539 6.347321 GGCATGCCAAATAAAACAAGTGTTAC 60.347 38.462 32.08 0.00 34.95 2.50
529 540 5.698545 GGCATGCCAAATAAAACAAGTGTTA 59.301 36.000 32.08 0.00 34.95 2.41
531 542 4.064388 GGCATGCCAAATAAAACAAGTGT 58.936 39.130 32.08 0.00 35.81 3.55
532 543 3.123284 CGGCATGCCAAATAAAACAAGTG 59.877 43.478 34.93 10.67 35.37 3.16
534 545 2.672381 CCGGCATGCCAAATAAAACAAG 59.328 45.455 34.93 14.50 35.37 3.16
538 549 0.107945 GCCCGGCATGCCAAATAAAA 60.108 50.000 34.93 0.00 35.37 1.52
539 550 0.975040 AGCCCGGCATGCCAAATAAA 60.975 50.000 34.93 0.00 35.37 1.40
540 551 1.381056 AGCCCGGCATGCCAAATAA 60.381 52.632 34.93 0.00 35.37 1.40
541 552 2.126596 CAGCCCGGCATGCCAAATA 61.127 57.895 34.93 0.00 35.37 1.40
542 553 3.463585 CAGCCCGGCATGCCAAAT 61.464 61.111 34.93 15.66 35.37 2.32
548 559 3.136123 CTGAACCAGCCCGGCATG 61.136 66.667 13.15 7.02 39.03 4.06
549 560 3.329889 TCTGAACCAGCCCGGCAT 61.330 61.111 13.15 0.00 39.03 4.40
550 561 4.020617 CTCTGAACCAGCCCGGCA 62.021 66.667 13.15 0.00 39.03 5.69
551 562 3.254024 TTCTCTGAACCAGCCCGGC 62.254 63.158 0.00 0.00 39.03 6.13
552 563 1.376037 GTTCTCTGAACCAGCCCGG 60.376 63.158 0.00 0.00 42.50 5.73
553 564 0.250295 TTGTTCTCTGAACCAGCCCG 60.250 55.000 7.81 0.00 0.00 6.13
554 565 1.239347 GTTGTTCTCTGAACCAGCCC 58.761 55.000 7.81 0.00 0.00 5.19
555 566 1.239347 GGTTGTTCTCTGAACCAGCC 58.761 55.000 7.81 4.33 41.24 4.85
556 567 1.967319 TGGTTGTTCTCTGAACCAGC 58.033 50.000 7.81 7.23 45.37 4.85
559 570 2.285977 ACGTTGGTTGTTCTCTGAACC 58.714 47.619 7.81 0.00 41.85 3.62
560 571 2.287103 GGACGTTGGTTGTTCTCTGAAC 59.713 50.000 3.74 3.74 0.00 3.18
561 572 2.557317 GGACGTTGGTTGTTCTCTGAA 58.443 47.619 0.00 0.00 0.00 3.02
562 573 1.537348 CGGACGTTGGTTGTTCTCTGA 60.537 52.381 0.00 0.00 0.00 3.27
563 574 0.859232 CGGACGTTGGTTGTTCTCTG 59.141 55.000 0.00 0.00 0.00 3.35
564 575 0.878961 GCGGACGTTGGTTGTTCTCT 60.879 55.000 0.00 0.00 0.00 3.10
565 576 1.568025 GCGGACGTTGGTTGTTCTC 59.432 57.895 0.00 0.00 0.00 2.87
566 577 2.241880 CGCGGACGTTGGTTGTTCT 61.242 57.895 0.00 0.00 33.53 3.01
567 578 2.247267 CGCGGACGTTGGTTGTTC 59.753 61.111 0.00 0.00 33.53 3.18
568 579 3.273834 CCGCGGACGTTGGTTGTT 61.274 61.111 24.07 0.00 37.70 2.83
571 582 2.992607 TAAAGCCGCGGACGTTGGTT 62.993 55.000 33.48 9.64 37.70 3.67
572 583 3.518419 TAAAGCCGCGGACGTTGGT 62.518 57.895 33.48 8.27 37.70 3.67
573 584 2.736682 CTAAAGCCGCGGACGTTGG 61.737 63.158 33.48 21.23 37.70 3.77
574 585 1.082117 ATCTAAAGCCGCGGACGTTG 61.082 55.000 33.48 15.40 37.70 4.10
575 586 0.457035 TATCTAAAGCCGCGGACGTT 59.543 50.000 33.48 24.89 37.70 3.99
576 587 0.672342 ATATCTAAAGCCGCGGACGT 59.328 50.000 33.48 16.04 37.70 4.34
577 588 1.060713 CATATCTAAAGCCGCGGACG 58.939 55.000 33.48 11.35 39.67 4.79
578 589 1.429463 CCATATCTAAAGCCGCGGAC 58.571 55.000 33.48 20.78 0.00 4.79
579 590 0.320374 CCCATATCTAAAGCCGCGGA 59.680 55.000 33.48 6.95 0.00 5.54
580 591 1.298859 GCCCATATCTAAAGCCGCGG 61.299 60.000 24.05 24.05 0.00 6.46
581 592 1.626654 CGCCCATATCTAAAGCCGCG 61.627 60.000 0.00 0.00 0.00 6.46
582 593 0.320421 TCGCCCATATCTAAAGCCGC 60.320 55.000 0.00 0.00 0.00 6.53
583 594 2.271800 GATCGCCCATATCTAAAGCCG 58.728 52.381 0.00 0.00 0.00 5.52
584 595 2.633488 GGATCGCCCATATCTAAAGCC 58.367 52.381 0.00 0.00 34.14 4.35
585 596 2.271800 CGGATCGCCCATATCTAAAGC 58.728 52.381 0.00 0.00 34.14 3.51
599 610 1.273887 GAATCGTGCTTGCGGATCG 59.726 57.895 0.71 0.00 0.00 3.69
600 611 1.273887 CGAATCGTGCTTGCGGATC 59.726 57.895 0.00 0.00 0.00 3.36
601 612 2.813179 GCGAATCGTGCTTGCGGAT 61.813 57.895 4.07 0.00 0.00 4.18
602 613 3.487202 GCGAATCGTGCTTGCGGA 61.487 61.111 4.07 0.00 0.00 5.54
603 614 4.520846 GGCGAATCGTGCTTGCGG 62.521 66.667 4.07 0.00 0.00 5.69
604 615 4.520846 GGGCGAATCGTGCTTGCG 62.521 66.667 4.07 0.00 0.00 4.85
605 616 4.520846 CGGGCGAATCGTGCTTGC 62.521 66.667 4.07 0.00 0.00 4.01
606 617 4.520846 GCGGGCGAATCGTGCTTG 62.521 66.667 4.07 0.00 0.00 4.01
619 630 2.110757 AATTGTTTGGCTTGGGCGGG 62.111 55.000 0.00 0.00 39.81 6.13
620 631 0.950071 CAATTGTTTGGCTTGGGCGG 60.950 55.000 0.00 0.00 39.81 6.13
621 632 0.249826 ACAATTGTTTGGCTTGGGCG 60.250 50.000 4.92 0.00 39.81 6.13
622 633 1.228533 CACAATTGTTTGGCTTGGGC 58.771 50.000 8.77 0.00 37.15 5.36
623 634 1.228533 GCACAATTGTTTGGCTTGGG 58.771 50.000 8.77 0.00 37.15 4.12
624 635 1.228533 GGCACAATTGTTTGGCTTGG 58.771 50.000 8.77 0.00 37.15 3.61
625 636 1.228533 GGGCACAATTGTTTGGCTTG 58.771 50.000 18.21 4.50 38.34 4.01
626 637 0.249826 CGGGCACAATTGTTTGGCTT 60.250 50.000 18.21 0.00 38.34 4.35
627 638 1.367102 CGGGCACAATTGTTTGGCT 59.633 52.632 18.21 0.00 38.34 4.75
628 639 1.667510 CCGGGCACAATTGTTTGGC 60.668 57.895 8.77 11.09 37.15 4.52
629 640 1.005156 CCCGGGCACAATTGTTTGG 60.005 57.895 8.08 8.14 37.15 3.28
630 641 0.105778 AACCCGGGCACAATTGTTTG 59.894 50.000 24.08 0.00 38.86 2.93
631 642 0.105778 CAACCCGGGCACAATTGTTT 59.894 50.000 24.08 0.00 0.00 2.83
632 643 1.745264 CAACCCGGGCACAATTGTT 59.255 52.632 24.08 0.49 0.00 2.83
633 644 2.206536 CCAACCCGGGCACAATTGT 61.207 57.895 24.08 4.92 0.00 2.71
634 645 2.656055 CCAACCCGGGCACAATTG 59.344 61.111 24.08 17.26 0.00 2.32
643 654 1.921869 ATAGCCAAGTCCCAACCCGG 61.922 60.000 0.00 0.00 0.00 5.73
644 655 0.463833 GATAGCCAAGTCCCAACCCG 60.464 60.000 0.00 0.00 0.00 5.28
645 656 0.623723 TGATAGCCAAGTCCCAACCC 59.376 55.000 0.00 0.00 0.00 4.11
646 657 1.751437 GTGATAGCCAAGTCCCAACC 58.249 55.000 0.00 0.00 0.00 3.77
647 658 1.369625 CGTGATAGCCAAGTCCCAAC 58.630 55.000 0.00 0.00 0.00 3.77
648 659 0.392461 GCGTGATAGCCAAGTCCCAA 60.392 55.000 0.00 0.00 0.00 4.12
649 660 1.220749 GCGTGATAGCCAAGTCCCA 59.779 57.895 0.00 0.00 0.00 4.37
650 661 0.811616 CAGCGTGATAGCCAAGTCCC 60.812 60.000 0.00 0.00 38.01 4.46
651 662 0.175760 TCAGCGTGATAGCCAAGTCC 59.824 55.000 0.00 0.00 38.01 3.85
652 663 1.281899 GTCAGCGTGATAGCCAAGTC 58.718 55.000 0.00 0.00 38.01 3.01
653 664 0.458543 CGTCAGCGTGATAGCCAAGT 60.459 55.000 0.00 0.00 38.01 3.16
654 665 0.179137 TCGTCAGCGTGATAGCCAAG 60.179 55.000 0.00 0.00 39.49 3.61
655 666 0.179137 CTCGTCAGCGTGATAGCCAA 60.179 55.000 0.00 0.00 39.49 4.52
656 667 1.433471 CTCGTCAGCGTGATAGCCA 59.567 57.895 0.00 0.00 39.49 4.75
657 668 1.946650 GCTCGTCAGCGTGATAGCC 60.947 63.158 11.02 0.00 35.39 3.93
658 669 3.606826 GCTCGTCAGCGTGATAGC 58.393 61.111 8.42 8.42 35.39 2.97
687 698 0.179137 TCTGCAGTCTTCCGTATGCG 60.179 55.000 14.67 0.00 41.58 4.73
688 699 1.565305 CTCTGCAGTCTTCCGTATGC 58.435 55.000 14.67 0.00 39.14 3.14
689 700 1.134995 TGCTCTGCAGTCTTCCGTATG 60.135 52.381 14.67 0.00 33.32 2.39
690 701 1.134965 GTGCTCTGCAGTCTTCCGTAT 60.135 52.381 14.67 0.00 40.08 3.06
691 702 0.243907 GTGCTCTGCAGTCTTCCGTA 59.756 55.000 14.67 0.00 40.08 4.02
692 703 1.005630 GTGCTCTGCAGTCTTCCGT 60.006 57.895 14.67 0.00 40.08 4.69
693 704 1.739562 GGTGCTCTGCAGTCTTCCG 60.740 63.158 14.67 0.00 40.08 4.30
694 705 1.739562 CGGTGCTCTGCAGTCTTCC 60.740 63.158 14.67 11.42 40.08 3.46
695 706 2.386660 GCGGTGCTCTGCAGTCTTC 61.387 63.158 14.67 3.58 44.61 2.87
696 707 2.358003 GCGGTGCTCTGCAGTCTT 60.358 61.111 14.67 0.00 44.61 3.01
697 708 4.731612 CGCGGTGCTCTGCAGTCT 62.732 66.667 18.92 0.00 45.42 3.24
698 709 4.724602 TCGCGGTGCTCTGCAGTC 62.725 66.667 18.92 7.67 45.42 3.51
701 712 3.881952 AATGTCGCGGTGCTCTGCA 62.882 57.895 18.92 4.30 45.42 4.41
702 713 2.680913 AAATGTCGCGGTGCTCTGC 61.681 57.895 6.13 9.57 42.06 4.26
703 714 1.133253 CAAATGTCGCGGTGCTCTG 59.867 57.895 6.13 0.00 0.00 3.35
704 715 2.034879 CCAAATGTCGCGGTGCTCT 61.035 57.895 6.13 0.00 0.00 4.09
705 716 2.480555 CCAAATGTCGCGGTGCTC 59.519 61.111 6.13 0.00 0.00 4.26
706 717 3.737172 GCCAAATGTCGCGGTGCT 61.737 61.111 6.13 0.00 0.00 4.40
722 733 4.971125 GGAGGATAGGCCGCACGC 62.971 72.222 0.00 0.00 43.43 5.34
723 734 2.872388 ATGGAGGATAGGCCGCACG 61.872 63.158 0.00 0.00 43.43 5.34
724 735 1.302033 CATGGAGGATAGGCCGCAC 60.302 63.158 0.00 0.00 43.43 5.34
725 736 3.150949 CATGGAGGATAGGCCGCA 58.849 61.111 0.00 0.00 43.43 5.69
726 737 2.359230 GCATGGAGGATAGGCCGC 60.359 66.667 0.00 0.00 43.43 6.53
727 738 2.348998 GGCATGGAGGATAGGCCG 59.651 66.667 0.00 0.00 43.43 6.13
728 739 0.251077 CTTGGCATGGAGGATAGGCC 60.251 60.000 0.00 0.00 44.77 5.19
729 740 0.475906 ACTTGGCATGGAGGATAGGC 59.524 55.000 5.31 0.00 0.00 3.93
730 741 2.579873 CAACTTGGCATGGAGGATAGG 58.420 52.381 5.31 0.00 0.00 2.57
731 742 2.173356 TCCAACTTGGCATGGAGGATAG 59.827 50.000 4.20 0.00 40.74 2.08
732 743 2.204463 TCCAACTTGGCATGGAGGATA 58.796 47.619 4.20 0.00 40.74 2.59
733 744 1.002069 TCCAACTTGGCATGGAGGAT 58.998 50.000 4.20 0.00 40.74 3.24
734 745 2.473768 TCCAACTTGGCATGGAGGA 58.526 52.632 4.20 7.88 40.74 3.71
737 748 2.158475 AGAAACTCCAACTTGGCATGGA 60.158 45.455 7.99 7.99 43.32 3.41
738 749 2.242043 AGAAACTCCAACTTGGCATGG 58.758 47.619 2.52 2.15 37.47 3.66
739 750 4.326504 AAAGAAACTCCAACTTGGCATG 57.673 40.909 2.52 0.00 37.47 4.06
740 751 4.651045 AGAAAAGAAACTCCAACTTGGCAT 59.349 37.500 2.52 0.00 37.47 4.40
741 752 4.023291 AGAAAAGAAACTCCAACTTGGCA 58.977 39.130 2.52 0.00 37.47 4.92
742 753 4.655762 AGAAAAGAAACTCCAACTTGGC 57.344 40.909 2.52 0.00 37.47 4.52
743 754 9.899226 CTTATAAGAAAAGAAACTCCAACTTGG 57.101 33.333 6.64 0.74 39.43 3.61
758 769 9.357652 GCAACTTGCATTCATCTTATAAGAAAA 57.642 29.630 18.79 15.52 44.26 2.29
759 770 8.915871 GCAACTTGCATTCATCTTATAAGAAA 57.084 30.769 18.79 10.25 44.26 2.52
780 791 2.618241 TGGCGATAGAAATGGATGCAAC 59.382 45.455 0.00 0.00 39.76 4.17
791 802 3.262405 AGGTAAACCTTGTGGCGATAGAA 59.738 43.478 0.00 0.00 46.09 2.10
793 804 2.936498 CAGGTAAACCTTGTGGCGATAG 59.064 50.000 0.00 0.00 46.09 2.08
794 805 2.937873 GCAGGTAAACCTTGTGGCGATA 60.938 50.000 0.00 0.00 46.09 2.92
795 806 1.821216 CAGGTAAACCTTGTGGCGAT 58.179 50.000 0.00 0.00 46.09 4.58
796 807 0.887387 GCAGGTAAACCTTGTGGCGA 60.887 55.000 0.00 0.00 46.09 5.54
797 808 1.579429 GCAGGTAAACCTTGTGGCG 59.421 57.895 0.00 0.00 46.09 5.69
799 810 1.698506 TTGGCAGGTAAACCTTGTGG 58.301 50.000 0.00 0.00 46.09 4.17
800 811 2.890311 TCATTGGCAGGTAAACCTTGTG 59.110 45.455 0.00 0.00 46.09 3.33
802 813 3.420893 TCTCATTGGCAGGTAAACCTTG 58.579 45.455 0.00 0.00 46.09 3.61
803 814 3.806949 TCTCATTGGCAGGTAAACCTT 57.193 42.857 0.00 0.00 46.09 3.50
805 816 4.864704 TTTTCTCATTGGCAGGTAAACC 57.135 40.909 0.00 0.00 0.00 3.27
806 817 5.596845 TGTTTTTCTCATTGGCAGGTAAAC 58.403 37.500 0.00 0.00 0.00 2.01
817 1061 9.801873 CCGGATTAACAATATGTTTTTCTCATT 57.198 29.630 0.00 0.00 41.45 2.57
823 1067 5.105675 ACCGCCGGATTAACAATATGTTTTT 60.106 36.000 11.71 0.00 41.45 1.94
828 1072 4.153475 CCTTACCGCCGGATTAACAATATG 59.847 45.833 11.71 0.00 0.00 1.78
830 1074 3.731089 CCTTACCGCCGGATTAACAATA 58.269 45.455 11.71 0.00 0.00 1.90
832 1076 2.013058 GCCTTACCGCCGGATTAACAA 61.013 52.381 11.71 0.00 0.00 2.83
834 1078 1.162181 GGCCTTACCGCCGGATTAAC 61.162 60.000 11.71 0.00 39.64 2.01
835 1079 1.146707 GGCCTTACCGCCGGATTAA 59.853 57.895 11.71 0.00 39.64 1.40
836 1080 2.823829 GGCCTTACCGCCGGATTA 59.176 61.111 11.71 0.00 39.64 1.75
843 1087 2.125106 CTGACCTGGCCTTACCGC 60.125 66.667 3.32 0.00 43.94 5.68
844 1088 1.218316 GACTGACCTGGCCTTACCG 59.782 63.158 3.32 0.00 43.94 4.02
845 1089 1.198759 TGGACTGACCTGGCCTTACC 61.199 60.000 3.32 0.00 39.86 2.85
846 1090 0.690762 TTGGACTGACCTGGCCTTAC 59.309 55.000 3.32 0.00 39.86 2.34
851 1118 0.179018 AGTGTTTGGACTGACCTGGC 60.179 55.000 0.00 0.00 39.86 4.85
860 1127 3.859411 TGGTGTTTTCAGTGTTTGGAC 57.141 42.857 0.00 0.00 0.00 4.02
861 1128 4.039245 TGTTTGGTGTTTTCAGTGTTTGGA 59.961 37.500 0.00 0.00 0.00 3.53
863 1130 5.914085 TTGTTTGGTGTTTTCAGTGTTTG 57.086 34.783 0.00 0.00 0.00 2.93
867 1134 6.907206 ATGATTTGTTTGGTGTTTTCAGTG 57.093 33.333 0.00 0.00 0.00 3.66
892 1159 4.403113 GGTCTAGTCTCTCGATCCCTTTTT 59.597 45.833 0.00 0.00 0.00 1.94
897 1164 1.202675 ACGGTCTAGTCTCTCGATCCC 60.203 57.143 0.00 0.00 0.00 3.85
898 1165 1.868498 CACGGTCTAGTCTCTCGATCC 59.132 57.143 0.00 0.00 0.00 3.36
899 1166 2.553086 ACACGGTCTAGTCTCTCGATC 58.447 52.381 0.00 0.00 0.00 3.69
900 1167 2.695127 ACACGGTCTAGTCTCTCGAT 57.305 50.000 0.00 0.00 0.00 3.59
901 1168 2.469274 AACACGGTCTAGTCTCTCGA 57.531 50.000 0.00 0.00 0.00 4.04
903 1170 3.919223 ACAAACACGGTCTAGTCTCTC 57.081 47.619 0.00 0.00 0.00 3.20
905 1172 3.714391 ACAACAAACACGGTCTAGTCTC 58.286 45.455 0.00 0.00 0.00 3.36
907 1174 3.714391 AGACAACAAACACGGTCTAGTC 58.286 45.455 0.00 0.00 38.74 2.59
908 1175 3.814005 AGACAACAAACACGGTCTAGT 57.186 42.857 0.00 0.00 38.74 2.57
909 1176 4.369182 AGAAGACAACAAACACGGTCTAG 58.631 43.478 0.00 0.00 39.55 2.43
910 1177 4.098960 AGAGAAGACAACAAACACGGTCTA 59.901 41.667 0.00 0.00 39.55 2.59
911 1178 3.118738 AGAGAAGACAACAAACACGGTCT 60.119 43.478 0.00 0.00 42.08 3.85
912 1179 3.001330 CAGAGAAGACAACAAACACGGTC 59.999 47.826 0.00 0.00 0.00 4.79
913 1180 2.936498 CAGAGAAGACAACAAACACGGT 59.064 45.455 0.00 0.00 0.00 4.83
914 1181 2.286418 GCAGAGAAGACAACAAACACGG 60.286 50.000 0.00 0.00 0.00 4.94
915 1182 2.609459 AGCAGAGAAGACAACAAACACG 59.391 45.455 0.00 0.00 0.00 4.49
916 1183 5.931441 ATAGCAGAGAAGACAACAAACAC 57.069 39.130 0.00 0.00 0.00 3.32
917 1184 9.719355 TTTATATAGCAGAGAAGACAACAAACA 57.281 29.630 0.00 0.00 0.00 2.83
927 1194 8.502387 GGCTTGTGAATTTATATAGCAGAGAAG 58.498 37.037 0.00 0.00 0.00 2.85
931 1198 8.696043 AATGGCTTGTGAATTTATATAGCAGA 57.304 30.769 0.00 0.00 0.00 4.26
942 1209 3.756933 ACTGCAAATGGCTTGTGAATT 57.243 38.095 0.00 0.00 45.15 2.17
943 1210 3.756933 AACTGCAAATGGCTTGTGAAT 57.243 38.095 0.00 0.00 45.15 2.57
945 1212 2.694628 AGAAACTGCAAATGGCTTGTGA 59.305 40.909 0.00 0.00 45.15 3.58
954 1221 4.405116 TTGGAAGCAAGAAACTGCAAAT 57.595 36.364 0.00 0.00 45.18 2.32
959 1226 5.064962 TGCAATTTTTGGAAGCAAGAAACTG 59.935 36.000 0.00 0.00 31.42 3.16
983 1260 1.138266 CCATGGTTCTATCCGGTTCGT 59.862 52.381 2.57 0.00 0.00 3.85
984 1261 1.865865 CCATGGTTCTATCCGGTTCG 58.134 55.000 2.57 0.00 0.00 3.95
986 1263 0.179056 CGCCATGGTTCTATCCGGTT 60.179 55.000 14.67 0.00 0.00 4.44
989 1266 1.000843 TGATCGCCATGGTTCTATCCG 59.999 52.381 14.67 6.47 0.00 4.18
992 1269 1.696336 AGCTGATCGCCATGGTTCTAT 59.304 47.619 14.67 1.72 40.39 1.98
993 1270 1.123077 AGCTGATCGCCATGGTTCTA 58.877 50.000 14.67 0.00 40.39 2.10
995 1272 2.175878 ATAGCTGATCGCCATGGTTC 57.824 50.000 14.67 8.92 40.39 3.62
1014 1291 2.031245 CAGTTTTGCATGTGCCGAGTAA 60.031 45.455 2.07 0.00 41.18 2.24
1016 1293 0.311790 CAGTTTTGCATGTGCCGAGT 59.688 50.000 2.07 0.00 41.18 4.18
1017 1294 0.387622 CCAGTTTTGCATGTGCCGAG 60.388 55.000 2.07 0.00 41.18 4.63
1021 1298 4.754570 TGCCAGTTTTGCATGTGC 57.245 50.000 0.00 0.00 42.50 4.57
1026 1303 1.927487 AGATCCATGCCAGTTTTGCA 58.073 45.000 0.00 0.00 43.97 4.08
1027 1304 2.997986 CAAAGATCCATGCCAGTTTTGC 59.002 45.455 0.00 0.00 0.00 3.68
1036 1322 1.588139 GCAGCGCAAAGATCCATGC 60.588 57.895 11.47 2.91 39.17 4.06
1068 1354 1.805943 TGGACTTGAATCGTCGTCGTA 59.194 47.619 1.33 0.00 38.33 3.43
1070 1356 0.982673 GTGGACTTGAATCGTCGTCG 59.017 55.000 0.00 0.00 38.55 5.12
1099 1385 6.620877 TGGCTTGTATATATTACCAGGAGG 57.379 41.667 0.00 0.00 42.21 4.30
1102 1388 7.394016 TGACATGGCTTGTATATATTACCAGG 58.606 38.462 5.96 0.00 39.18 4.45
1105 1391 8.267894 AGGATGACATGGCTTGTATATATTACC 58.732 37.037 5.96 2.85 39.18 2.85
1109 1395 9.444668 AGATAGGATGACATGGCTTGTATATAT 57.555 33.333 5.96 1.94 39.18 0.86
1111 1397 7.746243 AGATAGGATGACATGGCTTGTATAT 57.254 36.000 5.96 4.47 39.18 0.86
1112 1398 7.559335 AAGATAGGATGACATGGCTTGTATA 57.441 36.000 5.96 0.00 39.18 1.47
1113 1399 6.445451 AAGATAGGATGACATGGCTTGTAT 57.555 37.500 5.96 1.35 39.18 2.29
1114 1400 5.894298 AAGATAGGATGACATGGCTTGTA 57.106 39.130 5.96 0.00 39.18 2.41
1116 1402 5.009410 GGAAAAGATAGGATGACATGGCTTG 59.991 44.000 0.00 0.00 0.00 4.01
1119 1407 3.823304 GGGAAAAGATAGGATGACATGGC 59.177 47.826 0.00 0.00 0.00 4.40
1122 1410 6.838401 AGAAGGGAAAAGATAGGATGACAT 57.162 37.500 0.00 0.00 0.00 3.06
1127 1415 6.623183 AGGATCAAGAAGGGAAAAGATAGGAT 59.377 38.462 0.00 0.00 0.00 3.24
1132 1420 4.276642 GCAGGATCAAGAAGGGAAAAGAT 58.723 43.478 0.00 0.00 0.00 2.40
1133 1421 3.690460 GCAGGATCAAGAAGGGAAAAGA 58.310 45.455 0.00 0.00 0.00 2.52
1146 1434 1.406887 GGTTAAAGAGGCGCAGGATCA 60.407 52.381 10.83 0.00 0.00 2.92
1155 1448 0.328258 TGAGCAGGGGTTAAAGAGGC 59.672 55.000 0.00 0.00 0.00 4.70
1163 1456 0.333993 ATGCAGATTGAGCAGGGGTT 59.666 50.000 0.00 0.00 46.36 4.11
1167 1460 0.100682 GTGCATGCAGATTGAGCAGG 59.899 55.000 23.41 0.00 46.36 4.85
1174 1467 1.201647 GCTGAACTGTGCATGCAGATT 59.798 47.619 23.41 15.53 39.62 2.40
1194 1487 8.524870 AAAGTGAAATTGCATGCTAAAGTTAG 57.475 30.769 20.33 0.00 0.00 2.34
1196 1489 8.143835 AGTAAAGTGAAATTGCATGCTAAAGTT 58.856 29.630 20.33 11.18 0.00 2.66
1235 1541 7.201884 GCGGCTATGTAGGTATTCAGGATAATA 60.202 40.741 0.00 0.00 0.00 0.98
1236 1542 6.407074 GCGGCTATGTAGGTATTCAGGATAAT 60.407 42.308 0.00 0.00 0.00 1.28
1237 1543 5.105473 GCGGCTATGTAGGTATTCAGGATAA 60.105 44.000 0.00 0.00 0.00 1.75
1238 1544 4.401519 GCGGCTATGTAGGTATTCAGGATA 59.598 45.833 0.00 0.00 0.00 2.59
1240 1546 2.561419 GCGGCTATGTAGGTATTCAGGA 59.439 50.000 0.00 0.00 0.00 3.86
1242 1548 3.243737 TGTGCGGCTATGTAGGTATTCAG 60.244 47.826 0.00 0.00 0.00 3.02
1244 1550 3.380479 TGTGCGGCTATGTAGGTATTC 57.620 47.619 0.00 0.00 0.00 1.75
1245 1551 3.134081 ACTTGTGCGGCTATGTAGGTATT 59.866 43.478 0.00 0.00 0.00 1.89
1246 1552 2.698797 ACTTGTGCGGCTATGTAGGTAT 59.301 45.455 0.00 0.00 0.00 2.73
1248 1554 0.902531 ACTTGTGCGGCTATGTAGGT 59.097 50.000 0.00 0.00 0.00 3.08
1249 1555 1.134818 TGACTTGTGCGGCTATGTAGG 60.135 52.381 0.00 0.00 0.00 3.18
1250 1556 2.293677 TGACTTGTGCGGCTATGTAG 57.706 50.000 0.00 0.00 0.00 2.74
1256 1572 0.251354 AGATCATGACTTGTGCGGCT 59.749 50.000 0.00 0.00 0.00 5.52
1258 1574 2.730090 GCAAAGATCATGACTTGTGCGG 60.730 50.000 0.00 0.00 0.00 5.69
1279 1595 7.870509 TTGTTTCAGGAATCCAAGATCTATG 57.129 36.000 0.61 0.00 0.00 2.23
1289 1605 5.187576 TCAATCCCATTTGTTTCAGGAATCC 59.812 40.000 0.00 0.00 0.00 3.01
1290 1606 6.284891 TCAATCCCATTTGTTTCAGGAATC 57.715 37.500 0.00 0.00 0.00 2.52
1292 1608 6.723515 TGTATCAATCCCATTTGTTTCAGGAA 59.276 34.615 0.00 0.00 0.00 3.36
1293 1609 6.252233 TGTATCAATCCCATTTGTTTCAGGA 58.748 36.000 0.00 0.00 0.00 3.86
1303 1619 5.324409 ACGGCAATATGTATCAATCCCATT 58.676 37.500 0.00 0.00 0.00 3.16
1307 1623 5.451908 CACAACGGCAATATGTATCAATCC 58.548 41.667 0.00 0.00 0.00 3.01
1308 1624 4.911610 GCACAACGGCAATATGTATCAATC 59.088 41.667 0.00 0.00 0.00 2.67
1310 1626 3.691609 TGCACAACGGCAATATGTATCAA 59.308 39.130 0.00 0.00 41.65 2.57
1322 1638 1.455248 TATAAACCCTGCACAACGGC 58.545 50.000 0.00 0.00 0.00 5.68
1367 1685 1.212616 GCTGTCATTGTAGGCGCTAG 58.787 55.000 7.64 0.00 0.00 3.42
1428 1755 9.051679 GCTGAAATTTTATTGTTTAAACCACCT 57.948 29.630 15.59 0.84 0.00 4.00
1439 1766 9.643693 CCATAAACTCTGCTGAAATTTTATTGT 57.356 29.630 7.52 0.00 0.00 2.71
1443 1770 8.087750 CCAACCATAAACTCTGCTGAAATTTTA 58.912 33.333 7.52 6.17 0.00 1.52
1461 1788 3.998913 TGCTCATCTGAACCAACCATA 57.001 42.857 0.00 0.00 0.00 2.74
1548 1878 1.745141 GCCCTCAGCAGATACTTGGTG 60.745 57.143 0.00 0.00 45.45 4.17
1550 1880 0.179034 GGCCCTCAGCAGATACTTGG 60.179 60.000 0.00 0.00 46.50 3.61
1551 1881 0.543277 TGGCCCTCAGCAGATACTTG 59.457 55.000 0.00 0.00 46.50 3.16
1556 1886 0.333993 AAATGTGGCCCTCAGCAGAT 59.666 50.000 0.00 0.00 46.50 2.90
1654 9785 1.274703 ATGTTCACCGCCTCCCAGAT 61.275 55.000 0.00 0.00 0.00 2.90
1762 9893 2.443255 ACACAAATGGAGTCCCTGAACT 59.557 45.455 6.74 0.00 0.00 3.01
1809 9940 5.621197 TCACAAAAGGGTACATCAAATCG 57.379 39.130 0.00 0.00 0.00 3.34
1879 10010 7.390718 GTCTTACCTTGTGATAAATTCAGTGGT 59.609 37.037 0.00 0.00 36.74 4.16
1907 10038 6.435591 TCCAAAATTATTGTGTATGACAGCCA 59.564 34.615 0.00 0.00 35.44 4.75
1956 10087 6.806739 AGCTAGCAAATCGAATTTAAAACCAC 59.193 34.615 18.83 0.00 0.00 4.16
1983 10122 3.491447 GGAGCAAACACTTTGAATGTGCT 60.491 43.478 10.66 2.87 43.26 4.40
1991 10130 4.376340 ACAGAAAGGAGCAAACACTTTG 57.624 40.909 0.00 0.00 43.44 2.77
2052 10194 6.151691 CCCAACTTCTTGTCACATTAACATG 58.848 40.000 0.00 0.00 36.34 3.21
2053 10195 5.278957 GCCCAACTTCTTGTCACATTAACAT 60.279 40.000 0.00 0.00 0.00 2.71
2054 10196 4.037446 GCCCAACTTCTTGTCACATTAACA 59.963 41.667 0.00 0.00 0.00 2.41
2055 10197 4.278419 AGCCCAACTTCTTGTCACATTAAC 59.722 41.667 0.00 0.00 0.00 2.01
2057 10199 4.098914 AGCCCAACTTCTTGTCACATTA 57.901 40.909 0.00 0.00 0.00 1.90
2058 10200 2.949447 AGCCCAACTTCTTGTCACATT 58.051 42.857 0.00 0.00 0.00 2.71
2059 10201 2.624838 CAAGCCCAACTTCTTGTCACAT 59.375 45.455 0.00 0.00 36.04 3.21
2060 10202 2.023673 CAAGCCCAACTTCTTGTCACA 58.976 47.619 0.00 0.00 36.04 3.58
2063 10205 0.315251 GGCAAGCCCAACTTCTTGTC 59.685 55.000 0.00 0.00 41.15 3.18
2076 10218 2.568090 CCATGACAACGGGCAAGC 59.432 61.111 0.00 0.00 0.00 4.01
2081 10223 0.381801 GCAATAGCCATGACAACGGG 59.618 55.000 0.00 0.00 33.58 5.28
2082 10224 3.924238 GCAATAGCCATGACAACGG 57.076 52.632 0.00 0.00 33.58 4.44
2097 10239 7.818446 ACTTTTTCGTTTTTACTTAAAGGGCAA 59.182 29.630 0.00 0.00 0.00 4.52
2099 10241 7.760131 ACTTTTTCGTTTTTACTTAAAGGGC 57.240 32.000 0.00 0.00 0.00 5.19
2109 10251 9.247126 GCCCAATAAACTACTTTTTCGTTTTTA 57.753 29.630 0.00 0.00 33.40 1.52
2110 10252 7.982919 AGCCCAATAAACTACTTTTTCGTTTTT 59.017 29.630 0.00 0.00 33.40 1.94
2111 10253 7.494211 AGCCCAATAAACTACTTTTTCGTTTT 58.506 30.769 0.00 0.00 33.40 2.43
2112 10254 7.046292 AGCCCAATAAACTACTTTTTCGTTT 57.954 32.000 0.00 0.00 35.32 3.60
2113 10255 6.644248 AGCCCAATAAACTACTTTTTCGTT 57.356 33.333 0.00 0.00 0.00 3.85
2114 10256 6.938596 ACTAGCCCAATAAACTACTTTTTCGT 59.061 34.615 0.00 0.00 0.00 3.85
2115 10257 7.373778 ACTAGCCCAATAAACTACTTTTTCG 57.626 36.000 0.00 0.00 0.00 3.46
2121 10263 9.842775 GGTAAATAACTAGCCCAATAAACTACT 57.157 33.333 0.00 0.00 0.00 2.57
2122 10264 9.842775 AGGTAAATAACTAGCCCAATAAACTAC 57.157 33.333 0.00 0.00 0.00 2.73
2123 10265 9.841295 CAGGTAAATAACTAGCCCAATAAACTA 57.159 33.333 0.00 0.00 0.00 2.24
2124 10266 8.333984 ACAGGTAAATAACTAGCCCAATAAACT 58.666 33.333 0.00 0.00 0.00 2.66
2125 10267 8.515695 ACAGGTAAATAACTAGCCCAATAAAC 57.484 34.615 0.00 0.00 0.00 2.01
2126 10268 9.536510 AAACAGGTAAATAACTAGCCCAATAAA 57.463 29.630 0.00 0.00 0.00 1.40
2130 10272 5.947566 GGAAACAGGTAAATAACTAGCCCAA 59.052 40.000 0.00 0.00 0.00 4.12
2131 10273 5.014333 TGGAAACAGGTAAATAACTAGCCCA 59.986 40.000 0.00 0.00 35.01 5.36
2132 10274 5.356190 GTGGAAACAGGTAAATAACTAGCCC 59.644 44.000 0.00 0.00 44.46 5.19
2133 10275 5.356190 GGTGGAAACAGGTAAATAACTAGCC 59.644 44.000 0.00 0.00 44.46 3.93
2134 10276 6.178324 AGGTGGAAACAGGTAAATAACTAGC 58.822 40.000 0.00 0.00 44.46 3.42
2135 10277 7.664318 ACAAGGTGGAAACAGGTAAATAACTAG 59.336 37.037 0.00 0.00 44.46 2.57
2136 10278 7.519927 ACAAGGTGGAAACAGGTAAATAACTA 58.480 34.615 0.00 0.00 44.46 2.24
2138 10280 6.489022 AGACAAGGTGGAAACAGGTAAATAAC 59.511 38.462 0.00 0.00 44.46 1.89
2139 10281 6.607019 AGACAAGGTGGAAACAGGTAAATAA 58.393 36.000 0.00 0.00 44.46 1.40
2140 10282 6.195600 AGACAAGGTGGAAACAGGTAAATA 57.804 37.500 0.00 0.00 44.46 1.40
2143 10285 4.513406 AAGACAAGGTGGAAACAGGTAA 57.487 40.909 0.00 0.00 44.46 2.85
2145 10287 3.382083 AAAGACAAGGTGGAAACAGGT 57.618 42.857 0.00 0.00 44.46 4.00
2146 10288 3.447229 ACAAAAGACAAGGTGGAAACAGG 59.553 43.478 0.00 0.00 44.46 4.00
2147 10289 4.082245 ACACAAAAGACAAGGTGGAAACAG 60.082 41.667 0.00 0.00 44.46 3.16
2148 10290 3.829601 ACACAAAAGACAAGGTGGAAACA 59.170 39.130 0.00 0.00 35.62 2.83
2149 10291 4.173256 CACACAAAAGACAAGGTGGAAAC 58.827 43.478 0.00 0.00 35.62 2.78
2153 10295 1.476085 TGCACACAAAAGACAAGGTGG 59.524 47.619 0.00 0.00 35.62 4.61
2154 10296 2.937469 TGCACACAAAAGACAAGGTG 57.063 45.000 0.00 0.00 37.29 4.00
2155 10297 3.446873 TCATTGCACACAAAAGACAAGGT 59.553 39.130 0.00 0.00 39.77 3.50
2157 10299 5.342433 TCTTCATTGCACACAAAAGACAAG 58.658 37.500 0.00 0.00 39.77 3.16
2184 10353 0.390209 CGGTCGTACGGGTCCAATTT 60.390 55.000 16.52 0.00 0.00 1.82
2185 10354 1.216178 CGGTCGTACGGGTCCAATT 59.784 57.895 16.52 0.00 0.00 2.32
2221 10390 0.107081 CCAAGGGTACGTGGTCAACA 59.893 55.000 0.00 0.00 40.79 3.33
2222 10391 0.393820 TCCAAGGGTACGTGGTCAAC 59.606 55.000 0.00 0.00 45.19 3.18
2225 10394 0.899720 TGATCCAAGGGTACGTGGTC 59.100 55.000 0.00 6.62 45.19 4.02
2231 10412 4.395231 GTGTTTAAGCTGATCCAAGGGTAC 59.605 45.833 0.00 0.00 0.00 3.34
2247 10428 4.438336 CCTCACTCGATCGCTAGTGTTTAA 60.438 45.833 26.72 13.37 42.96 1.52
2327 10508 3.009916 AGGAGAAGTTCGTGTCTAGGGTA 59.990 47.826 0.00 0.00 0.00 3.69
2400 10581 3.574354 ATGGAAGATGGGAAGAAGCTC 57.426 47.619 0.00 0.00 0.00 4.09
2462 10643 3.550275 GCAATTCGTTGTCGCTGTAGATA 59.450 43.478 0.00 0.00 36.96 1.98
2588 10769 1.528542 CGGTGGGAGCCTCGATCTA 60.529 63.158 0.00 0.00 0.00 1.98
2633 10814 2.361438 GAGGTTATCCATCCGAACGAGT 59.639 50.000 0.00 0.00 35.89 4.18
2708 10894 1.003545 CTGCCACGTATACATGCTTGC 60.004 52.381 3.32 0.00 0.00 4.01
2710 10896 2.979814 TCTGCCACGTATACATGCTT 57.020 45.000 3.32 0.00 0.00 3.91
2711 10897 3.181466 TGAATCTGCCACGTATACATGCT 60.181 43.478 3.32 0.00 0.00 3.79
2712 10898 3.059597 GTGAATCTGCCACGTATACATGC 60.060 47.826 3.32 2.71 0.00 4.06
2904 11657 6.474819 TTCATGTAATTGACTACAACACCG 57.525 37.500 0.00 0.00 38.90 4.94
3012 11769 3.506455 TGCTCTTAGAGTAGTCGCAAGTT 59.494 43.478 11.18 0.00 32.93 2.66
3189 12186 9.777297 ACATATTTTTAACCTTTGAAGCACATT 57.223 25.926 0.00 0.00 0.00 2.71
3385 12404 6.889301 ACCATGTTCATGAATGATATGACC 57.111 37.500 12.12 0.00 35.51 4.02
3740 12796 5.705609 ACAAAAGGAATTACGCAACAGAT 57.294 34.783 0.00 0.00 0.00 2.90
3847 12935 5.289595 TGTCGCTCAAATGGATGTATCTAC 58.710 41.667 0.00 0.00 0.00 2.59
4020 13130 5.464389 GGAAGTCAAACTTGCGTAACTCTAA 59.536 40.000 0.00 0.00 38.80 2.10
4124 13917 5.066593 CCTTCTAATCTAGGGGCACAATTC 58.933 45.833 0.00 0.00 0.00 2.17
4306 14108 9.071276 TGATGAAAGGGAAATTTAGAGCATATC 57.929 33.333 0.00 0.00 0.00 1.63
4348 14150 1.827969 ACGGAGCTGCTCTCTTATGTT 59.172 47.619 27.09 2.51 41.60 2.71
4365 14167 7.799914 GTGTTTAACATGAAAGTTTAGGTACGG 59.200 37.037 0.00 0.00 33.07 4.02
4519 14321 4.883585 CCTCCTTTTCCGATGATTGATTGA 59.116 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.