Multiple sequence alignment - TraesCS3B01G365900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G365900 chr3B 100.000 6093 0 0 1 6093 578398172 578404264 0.000000e+00 11252.0
1 TraesCS3B01G365900 chr3B 94.059 707 18 6 1 686 785750442 785749739 0.000000e+00 1051.0
2 TraesCS3B01G365900 chr3B 91.358 81 7 0 998 1078 254779962 254779882 1.800000e-20 111.0
3 TraesCS3B01G365900 chr3D 89.805 1491 69 26 2843 4264 441146977 441148453 0.000000e+00 1834.0
4 TraesCS3B01G365900 chr3D 88.444 1073 71 22 4264 5317 441148489 441149527 0.000000e+00 1245.0
5 TraesCS3B01G365900 chr3D 90.086 817 36 11 1538 2326 441145535 441146334 0.000000e+00 1018.0
6 TraesCS3B01G365900 chr3D 86.241 814 55 28 718 1500 441144747 441145534 0.000000e+00 830.0
7 TraesCS3B01G365900 chr3D 85.953 598 42 14 5426 6003 136768738 136768163 8.740000e-168 601.0
8 TraesCS3B01G365900 chr3D 84.857 350 27 8 2000 2326 441146420 441146766 4.550000e-86 329.0
9 TraesCS3B01G365900 chr3D 92.562 121 7 2 2685 2804 441146850 441146969 8.120000e-39 172.0
10 TraesCS3B01G365900 chr3D 95.455 88 4 0 2572 2659 441146767 441146854 2.290000e-29 141.0
11 TraesCS3B01G365900 chr3D 95.122 82 4 0 2572 2653 441146335 441146416 4.960000e-26 130.0
12 TraesCS3B01G365900 chr3D 95.062 81 3 1 2492 2572 341550568 341550647 6.410000e-25 126.0
13 TraesCS3B01G365900 chr3D 93.902 82 4 1 2492 2573 300775492 300775572 8.290000e-24 122.0
14 TraesCS3B01G365900 chr3D 94.937 79 3 1 2492 2570 570848745 570848668 8.290000e-24 122.0
15 TraesCS3B01G365900 chr3A 90.433 1432 68 31 2884 4262 581273636 581275051 0.000000e+00 1821.0
16 TraesCS3B01G365900 chr3A 86.106 1641 116 47 751 2317 581271582 581273184 0.000000e+00 1664.0
17 TraesCS3B01G365900 chr3A 90.176 1079 70 19 4264 5321 581275089 581276152 0.000000e+00 1373.0
18 TraesCS3B01G365900 chr3A 90.253 790 59 5 5319 6093 64745177 64744391 0.000000e+00 1016.0
19 TraesCS3B01G365900 chr3A 94.017 234 13 1 2572 2804 581273194 581273427 2.700000e-93 353.0
20 TraesCS3B01G365900 chr3A 100.000 169 0 0 2325 2493 509883601 509883769 4.590000e-81 313.0
21 TraesCS3B01G365900 chr3A 93.651 189 12 0 5322 5510 64738754 64738566 3.600000e-72 283.0
22 TraesCS3B01G365900 chr3A 82.918 281 39 8 5430 5703 327098378 327098656 1.700000e-60 244.0
23 TraesCS3B01G365900 chr3A 91.358 81 7 0 998 1078 215482212 215482132 1.800000e-20 111.0
24 TraesCS3B01G365900 chr7B 92.921 777 39 9 5319 6093 685357978 685357216 0.000000e+00 1116.0
25 TraesCS3B01G365900 chr7B 100.000 169 0 0 2325 2493 344312582 344312414 4.590000e-81 313.0
26 TraesCS3B01G365900 chr7B 82.022 89 8 4 616 696 555318555 555318643 1.100000e-07 69.4
27 TraesCS3B01G365900 chr2B 93.494 707 24 7 1 686 716645537 716646242 0.000000e+00 1031.0
28 TraesCS3B01G365900 chr2B 93.731 654 8 8 66 688 769891369 769892020 0.000000e+00 950.0
29 TraesCS3B01G365900 chr2B 87.696 382 43 2 3250 3627 77170290 77170671 5.600000e-120 442.0
30 TraesCS3B01G365900 chr2B 98.343 181 0 2 2325 2502 7765477 7765657 1.270000e-81 315.0
31 TraesCS3B01G365900 chr2B 100.000 169 0 0 2325 2493 583775835 583776003 4.590000e-81 313.0
32 TraesCS3B01G365900 chr2B 93.048 187 12 1 5322 5508 103474008 103474193 7.780000e-69 272.0
33 TraesCS3B01G365900 chr2B 84.956 113 15 2 1000 1110 77168977 77169089 4.990000e-21 113.0
34 TraesCS3B01G365900 chr2B 81.319 91 12 5 1 87 662890425 662890336 1.100000e-07 69.4
35 TraesCS3B01G365900 chr2B 83.607 61 7 2 1 61 69561545 69561602 3.000000e-03 54.7
36 TraesCS3B01G365900 chr5B 92.788 721 20 11 1 689 509508012 509507292 0.000000e+00 1014.0
37 TraesCS3B01G365900 chr5B 96.768 557 15 3 56 611 351280360 351280914 0.000000e+00 926.0
38 TraesCS3B01G365900 chr5B 100.000 34 0 0 653 686 351280984 351281017 5.100000e-06 63.9
39 TraesCS3B01G365900 chr1A 89.861 789 58 9 5321 6093 3520959 3521741 0.000000e+00 994.0
40 TraesCS3B01G365900 chr1A 89.127 561 40 10 5337 5882 566475120 566474566 0.000000e+00 678.0
41 TraesCS3B01G365900 chr1A 91.689 373 28 1 3259 3628 499785370 499784998 1.170000e-141 514.0
42 TraesCS3B01G365900 chr1A 87.179 429 31 7 5688 6093 555721723 555722150 3.330000e-127 466.0
43 TraesCS3B01G365900 chr1A 91.892 185 14 1 5324 5508 3529239 3529422 2.180000e-64 257.0
44 TraesCS3B01G365900 chr5D 89.935 775 57 7 5321 6093 532271188 532270433 0.000000e+00 979.0
45 TraesCS3B01G365900 chr5D 89.440 625 51 8 36 654 478529680 478530295 0.000000e+00 774.0
46 TraesCS3B01G365900 chr5D 79.772 351 58 11 4580 4923 113396038 113396382 6.100000e-60 243.0
47 TraesCS3B01G365900 chr5D 77.608 393 56 21 4580 4958 559460073 559459699 6.190000e-50 209.0
48 TraesCS3B01G365900 chr5D 96.203 79 2 1 2492 2570 250069635 250069712 1.780000e-25 128.0
49 TraesCS3B01G365900 chr5D 93.671 79 4 1 2492 2570 252615705 252615782 3.860000e-22 117.0
50 TraesCS3B01G365900 chr1B 92.125 673 24 13 44 687 82056189 82056861 0.000000e+00 922.0
51 TraesCS3B01G365900 chr1B 90.464 388 32 3 3246 3628 543498128 543497741 1.960000e-139 507.0
52 TraesCS3B01G365900 chr1B 91.250 80 7 0 1000 1079 543500052 543499973 6.460000e-20 110.0
53 TraesCS3B01G365900 chr1B 100.000 30 0 0 661 690 682334424 682334453 8.530000e-04 56.5
54 TraesCS3B01G365900 chr6B 88.437 787 52 10 5321 6090 340075578 340076342 0.000000e+00 913.0
55 TraesCS3B01G365900 chr6B 100.000 169 0 0 2325 2493 28503810 28503642 4.590000e-81 313.0
56 TraesCS3B01G365900 chr6B 77.612 268 46 13 4671 4930 715901896 715901635 3.800000e-32 150.0
57 TraesCS3B01G365900 chr2A 89.888 623 39 15 90 699 15975215 15975826 0.000000e+00 780.0
58 TraesCS3B01G365900 chr2A 88.969 417 34 9 5688 6093 192247325 192246910 7.050000e-139 505.0
59 TraesCS3B01G365900 chr2A 100.000 169 0 0 2325 2493 70233393 70233561 4.590000e-81 313.0
60 TraesCS3B01G365900 chr2A 87.050 139 14 4 11 145 19941981 19941843 2.940000e-33 154.0
61 TraesCS3B01G365900 chr2A 79.191 173 27 9 4655 4822 59064268 59064436 1.800000e-20 111.0
62 TraesCS3B01G365900 chr2A 91.139 79 7 0 1000 1078 51582360 51582438 2.320000e-19 108.0
63 TraesCS3B01G365900 chr4A 88.997 618 50 15 1 611 494455962 494455356 0.000000e+00 749.0
64 TraesCS3B01G365900 chr4A 89.125 377 38 2 3253 3626 163818734 163819110 3.330000e-127 466.0
65 TraesCS3B01G365900 chr1D 90.722 388 31 3 3246 3628 404138653 404138266 4.210000e-141 512.0
66 TraesCS3B01G365900 chr1D 92.593 81 6 0 999 1079 404139954 404139874 3.860000e-22 117.0
67 TraesCS3B01G365900 chr4D 89.209 417 32 9 5688 6093 10683811 10683397 5.450000e-140 508.0
68 TraesCS3B01G365900 chr4D 89.757 371 35 2 3259 3626 312800694 312800324 7.150000e-129 472.0
69 TraesCS3B01G365900 chr4D 82.000 300 37 13 4637 4921 3720349 3720052 7.890000e-59 239.0
70 TraesCS3B01G365900 chr4D 93.827 81 3 2 2492 2571 121405545 121405466 2.980000e-23 121.0
71 TraesCS3B01G365900 chr4D 92.593 81 5 1 2492 2572 213708335 213708414 1.390000e-21 115.0
72 TraesCS3B01G365900 chr4B 89.390 377 37 1 3253 3626 390280735 390281111 7.150000e-129 472.0
73 TraesCS3B01G365900 chr4B 92.857 322 21 2 5774 6093 286105350 286105029 3.330000e-127 466.0
74 TraesCS3B01G365900 chr4B 96.703 182 3 3 2325 2505 262722290 262722469 3.570000e-77 300.0
75 TraesCS3B01G365900 chr5A 92.025 326 22 4 5771 6093 495833811 495834135 7.200000e-124 455.0
76 TraesCS3B01G365900 chr5A 80.747 348 52 13 4591 4929 464134884 464134543 2.180000e-64 257.0
77 TraesCS3B01G365900 chr5A 82.500 80 5 5 616 687 428990339 428990417 1.830000e-05 62.1
78 TraesCS3B01G365900 chr7A 91.925 322 24 2 5774 6093 694013330 694013009 3.350000e-122 449.0
79 TraesCS3B01G365900 chr7A 82.000 300 35 11 4672 4957 435939700 435939994 2.840000e-58 237.0
80 TraesCS3B01G365900 chr7A 92.771 83 5 1 2492 2574 485195212 485195293 1.070000e-22 119.0
81 TraesCS3B01G365900 chr2D 91.718 326 24 3 5771 6093 645256562 645256887 3.350000e-122 449.0
82 TraesCS3B01G365900 chr2D 87.037 378 46 1 3253 3627 49877341 49877718 2.030000e-114 424.0
83 TraesCS3B01G365900 chr2D 80.606 330 49 13 4591 4909 508079441 508079116 2.190000e-59 241.0
84 TraesCS3B01G365900 chr2D 94.118 85 4 1 2492 2576 331544225 331544142 1.780000e-25 128.0
85 TraesCS3B01G365900 chr2D 91.139 79 7 0 1000 1078 49875921 49875999 2.320000e-19 108.0
86 TraesCS3B01G365900 chr7D 93.750 240 12 1 5479 5718 448927994 448927758 2.090000e-94 357.0
87 TraesCS3B01G365900 chr7D 92.500 200 14 1 5322 5520 448872543 448872344 1.000000e-72 285.0
88 TraesCS3B01G365900 chr6A 100.000 169 0 0 2325 2493 447173483 447173315 4.590000e-81 313.0
89 TraesCS3B01G365900 chrUn 100.000 168 0 0 2325 2492 88100272 88100105 1.650000e-80 311.0
90 TraesCS3B01G365900 chr6D 82.283 254 27 11 4679 4930 325421688 325421451 2.880000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G365900 chr3B 578398172 578404264 6092 False 11252.000 11252 100.0000 1 6093 1 chr3B.!!$F1 6092
1 TraesCS3B01G365900 chr3B 785749739 785750442 703 True 1051.000 1051 94.0590 1 686 1 chr3B.!!$R2 685
2 TraesCS3B01G365900 chr3D 441144747 441149527 4780 False 712.375 1834 90.3215 718 5317 8 chr3D.!!$F3 4599
3 TraesCS3B01G365900 chr3D 136768163 136768738 575 True 601.000 601 85.9530 5426 6003 1 chr3D.!!$R1 577
4 TraesCS3B01G365900 chr3A 581271582 581276152 4570 False 1302.750 1821 90.1830 751 5321 4 chr3A.!!$F3 4570
5 TraesCS3B01G365900 chr3A 64744391 64745177 786 True 1016.000 1016 90.2530 5319 6093 1 chr3A.!!$R2 774
6 TraesCS3B01G365900 chr7B 685357216 685357978 762 True 1116.000 1116 92.9210 5319 6093 1 chr7B.!!$R2 774
7 TraesCS3B01G365900 chr2B 716645537 716646242 705 False 1031.000 1031 93.4940 1 686 1 chr2B.!!$F5 685
8 TraesCS3B01G365900 chr2B 769891369 769892020 651 False 950.000 950 93.7310 66 688 1 chr2B.!!$F6 622
9 TraesCS3B01G365900 chr2B 77168977 77170671 1694 False 277.500 442 86.3260 1000 3627 2 chr2B.!!$F7 2627
10 TraesCS3B01G365900 chr5B 509507292 509508012 720 True 1014.000 1014 92.7880 1 689 1 chr5B.!!$R1 688
11 TraesCS3B01G365900 chr5B 351280360 351281017 657 False 494.950 926 98.3840 56 686 2 chr5B.!!$F1 630
12 TraesCS3B01G365900 chr1A 3520959 3521741 782 False 994.000 994 89.8610 5321 6093 1 chr1A.!!$F1 772
13 TraesCS3B01G365900 chr1A 566474566 566475120 554 True 678.000 678 89.1270 5337 5882 1 chr1A.!!$R2 545
14 TraesCS3B01G365900 chr5D 532270433 532271188 755 True 979.000 979 89.9350 5321 6093 1 chr5D.!!$R1 772
15 TraesCS3B01G365900 chr5D 478529680 478530295 615 False 774.000 774 89.4400 36 654 1 chr5D.!!$F4 618
16 TraesCS3B01G365900 chr1B 82056189 82056861 672 False 922.000 922 92.1250 44 687 1 chr1B.!!$F1 643
17 TraesCS3B01G365900 chr1B 543497741 543500052 2311 True 308.500 507 90.8570 1000 3628 2 chr1B.!!$R1 2628
18 TraesCS3B01G365900 chr6B 340075578 340076342 764 False 913.000 913 88.4370 5321 6090 1 chr6B.!!$F1 769
19 TraesCS3B01G365900 chr2A 15975215 15975826 611 False 780.000 780 89.8880 90 699 1 chr2A.!!$F1 609
20 TraesCS3B01G365900 chr4A 494455356 494455962 606 True 749.000 749 88.9970 1 611 1 chr4A.!!$R1 610
21 TraesCS3B01G365900 chr1D 404138266 404139954 1688 True 314.500 512 91.6575 999 3628 2 chr1D.!!$R1 2629
22 TraesCS3B01G365900 chr2D 49875921 49877718 1797 False 266.000 424 89.0880 1000 3627 2 chr2D.!!$F2 2627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 1045 1.033746 CATTTGCAGGCCCTCATCGT 61.034 55.0 0.00 0.00 0.00 3.73 F
1427 1697 0.098025 CGGTGTGCGTTTGTGTTTCT 59.902 50.0 0.00 0.00 0.00 2.52 F
1448 1743 0.539669 GGCTTACTGTTTGGGTGGCT 60.540 55.0 0.00 0.00 0.00 4.75 F
2342 3259 0.178992 TGTGGTAAAGCTGCTGCCTT 60.179 50.0 12.44 8.34 40.80 4.35 F
2784 3732 0.179020 TGCTGCCACCTGCCATATAC 60.179 55.0 0.00 0.00 40.16 1.47 F
4117 6512 0.242017 GTAGCCCGTTGTCACGTACT 59.758 55.0 0.00 0.00 45.62 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 3150 0.178992 AGGCAGCAGCTTTACCACAA 60.179 50.0 0.00 0.0 41.70 3.33 R
2326 3154 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.0 0.00 0.0 38.07 2.85 R
2393 3310 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.0 0.00 0.0 0.00 2.74 R
4015 6386 0.248336 CGTACGAGTCTATGCCGCAA 60.248 55.0 10.44 0.0 0.00 4.85 R
4532 6988 0.676184 TCTGCAGAAGAGCTCGTGTT 59.324 50.0 15.67 0.0 34.99 3.32 R
5383 7867 0.526954 CGAACCGTTGTATCCCTCCG 60.527 60.0 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.880332 ACCATGCTATTCACACGAAAGTTAT 59.120 36.000 0.00 0.00 46.40 1.89
287 304 6.828273 TCCCGAGATATGACAAATGTGAAAAT 59.172 34.615 0.00 0.00 0.00 1.82
589 611 5.486063 TCCTAGTGGTGGCACTATTTTTCTA 59.514 40.000 18.45 7.74 37.09 2.10
634 669 2.417924 GGCAGAGCAGAAAGATCGAAGA 60.418 50.000 0.00 0.00 45.75 2.87
703 765 9.533831 AGCTTTTCCCTAAAGAAAATATTCTGA 57.466 29.630 0.00 0.00 45.19 3.27
851 918 1.920351 GGAAATCCCTAGTTCCCCACA 59.080 52.381 0.00 0.00 42.77 4.17
876 943 5.105917 CGATCCTCTTCCTCTATAAAGCCTC 60.106 48.000 0.00 0.00 0.00 4.70
973 1041 1.544724 GTAACATTTGCAGGCCCTCA 58.455 50.000 0.00 0.00 0.00 3.86
977 1045 1.033746 CATTTGCAGGCCCTCATCGT 61.034 55.000 0.00 0.00 0.00 3.73
981 1049 3.866582 CAGGCCCTCATCGTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
989 1057 1.448922 CTCATCGTCCCCTCGAGGTC 61.449 65.000 29.25 17.53 43.00 3.85
992 1060 2.627839 ATCGTCCCCTCGAGGTCTCC 62.628 65.000 29.25 13.22 43.00 3.71
1208 1397 0.250209 GATCTGGGTCATGCGATGCT 60.250 55.000 0.00 0.00 0.00 3.79
1219 1408 3.344215 CGATGCTCGCCTGGATGC 61.344 66.667 0.00 0.00 31.14 3.91
1220 1409 2.976903 GATGCTCGCCTGGATGCC 60.977 66.667 0.00 0.00 0.00 4.40
1231 1420 3.102972 GCCTGGATGCCTAGATCTGATA 58.897 50.000 5.18 0.00 0.00 2.15
1286 1556 0.865111 GCGATTTGGTTGTTTTGGCC 59.135 50.000 0.00 0.00 0.00 5.36
1292 1562 0.105964 TGGTTGTTTTGGCCTGGCTA 60.106 50.000 19.68 10.28 0.00 3.93
1293 1563 1.044611 GGTTGTTTTGGCCTGGCTAA 58.955 50.000 19.68 16.80 0.00 3.09
1298 1568 5.487433 GTTGTTTTGGCCTGGCTAATTATT 58.513 37.500 18.56 0.00 0.00 1.40
1315 1585 0.178068 ATTGTAATCGAGGCGCCTGT 59.822 50.000 38.41 17.36 0.00 4.00
1396 1666 0.846427 ATTTGTCTGCAGGGAGGGGA 60.846 55.000 15.13 0.00 0.00 4.81
1401 1671 0.343372 TCTGCAGGGAGGGGAGTTAT 59.657 55.000 15.13 0.00 0.00 1.89
1408 1678 1.322442 GGAGGGGAGTTATGCATTGC 58.678 55.000 3.54 0.46 0.00 3.56
1424 1694 2.101380 GCGGTGTGCGTTTGTGTT 59.899 55.556 0.00 0.00 0.00 3.32
1426 1696 1.468340 GCGGTGTGCGTTTGTGTTTC 61.468 55.000 0.00 0.00 0.00 2.78
1427 1697 0.098025 CGGTGTGCGTTTGTGTTTCT 59.902 50.000 0.00 0.00 0.00 2.52
1428 1698 1.328069 CGGTGTGCGTTTGTGTTTCTA 59.672 47.619 0.00 0.00 0.00 2.10
1435 1730 3.249080 TGCGTTTGTGTTTCTAGGCTTAC 59.751 43.478 0.00 0.00 0.00 2.34
1436 1731 3.497262 GCGTTTGTGTTTCTAGGCTTACT 59.503 43.478 0.00 0.00 0.00 2.24
1448 1743 0.539669 GGCTTACTGTTTGGGTGGCT 60.540 55.000 0.00 0.00 0.00 4.75
1492 1788 2.226330 GATGGGGTAAATATGCGCACA 58.774 47.619 14.90 0.00 0.00 4.57
1509 1805 3.986572 CGCACAAATTTGCTGTTTGGATA 59.013 39.130 18.12 0.00 40.62 2.59
1519 1815 4.122046 TGCTGTTTGGATATCTGTCATCG 58.878 43.478 2.05 0.00 0.00 3.84
1648 1958 4.067972 GTTGTTGAACCAGAGTACCAGA 57.932 45.455 0.00 0.00 0.00 3.86
1649 1959 3.746045 TGTTGAACCAGAGTACCAGAC 57.254 47.619 0.00 0.00 0.00 3.51
1650 1960 2.367567 TGTTGAACCAGAGTACCAGACC 59.632 50.000 0.00 0.00 0.00 3.85
1651 1961 2.633481 GTTGAACCAGAGTACCAGACCT 59.367 50.000 0.00 0.00 0.00 3.85
1652 1962 2.248248 TGAACCAGAGTACCAGACCTG 58.752 52.381 0.00 0.00 0.00 4.00
1783 2093 2.114056 CATGCTTCCATTTCATTCGCG 58.886 47.619 0.00 0.00 0.00 5.87
1787 2097 2.223340 GCTTCCATTTCATTCGCGTCAT 60.223 45.455 5.77 0.00 0.00 3.06
1802 2112 3.604198 CGCGTCATATTCCTTAGATGTCG 59.396 47.826 0.00 0.00 35.93 4.35
1850 2164 4.285775 AGAAATATCTGCTCTAAGCCCCTC 59.714 45.833 0.00 0.00 41.51 4.30
1854 2168 3.157949 GCTCTAAGCCCCTCGCCT 61.158 66.667 0.00 0.00 38.78 5.52
1868 2182 3.531538 CCTCGCCTTTCAGTTTAGCATA 58.468 45.455 0.00 0.00 0.00 3.14
1875 2189 5.181245 GCCTTTCAGTTTAGCATAGACAACA 59.819 40.000 0.00 0.00 0.00 3.33
1984 2298 1.922447 TGGCCATGGAGGAGTATTGTT 59.078 47.619 18.40 0.00 41.22 2.83
1989 2303 5.598417 GGCCATGGAGGAGTATTGTTAAAAT 59.402 40.000 18.40 0.00 41.22 1.82
1990 2304 6.775629 GGCCATGGAGGAGTATTGTTAAAATA 59.224 38.462 18.40 0.00 41.22 1.40
2031 2345 2.969262 AGAATCTAGGCCTACTTGGAGC 59.031 50.000 8.91 1.72 38.35 4.70
2060 2374 6.073222 CGGTCCACATTGGCTTAGAATATAAC 60.073 42.308 0.00 0.00 37.47 1.89
2062 2376 7.448469 GGTCCACATTGGCTTAGAATATAACAT 59.552 37.037 0.00 0.00 37.47 2.71
2126 2482 8.217799 TCGTTTAATCAATCCCTCCTGAATATT 58.782 33.333 0.00 0.00 0.00 1.28
2160 2516 8.871686 AACTGTCAATTGTTTAACCAGAATTC 57.128 30.769 5.13 0.00 0.00 2.17
2322 3150 4.079253 GTTGGGTGATGTCCTGTGTAAAT 58.921 43.478 0.00 0.00 0.00 1.40
2326 3154 4.082787 GGGTGATGTCCTGTGTAAATTGTG 60.083 45.833 0.00 0.00 0.00 3.33
2328 3156 4.518970 GTGATGTCCTGTGTAAATTGTGGT 59.481 41.667 0.00 0.00 0.00 4.16
2330 3158 6.205853 GTGATGTCCTGTGTAAATTGTGGTAA 59.794 38.462 0.00 0.00 0.00 2.85
2331 3159 6.773200 TGATGTCCTGTGTAAATTGTGGTAAA 59.227 34.615 0.00 0.00 0.00 2.01
2342 3259 0.178992 TGTGGTAAAGCTGCTGCCTT 60.179 50.000 12.44 8.34 40.80 4.35
2343 3260 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2344 3261 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2346 3263 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2347 3264 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2348 3265 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2352 3269 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2354 3271 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2371 3288 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2372 3289 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2373 3290 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2374 3291 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2375 3292 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2376 3293 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2377 3294 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2378 3295 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2392 3309 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2393 3310 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2394 3311 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2395 3312 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2396 3313 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2397 3314 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2398 3315 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2399 3316 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2400 3317 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2401 3318 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2402 3319 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2403 3320 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2404 3321 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2405 3322 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2406 3323 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2407 3324 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2408 3325 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2409 3326 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2410 3327 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2411 3328 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2412 3329 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2413 3330 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2414 3331 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2415 3332 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2416 3333 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2417 3334 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2418 3335 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2419 3336 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2420 3337 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2421 3338 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2422 3339 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2423 3340 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2424 3341 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2425 3342 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2426 3343 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2427 3344 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2428 3345 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2429 3346 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2434 3351 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2435 3352 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2436 3353 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2437 3354 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2438 3355 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2439 3356 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2440 3357 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2441 3358 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2442 3359 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2443 3360 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2444 3361 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2445 3362 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2446 3363 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2447 3364 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2448 3365 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2449 3366 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2450 3367 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2451 3368 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2452 3369 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2453 3370 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2478 3395 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2479 3396 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2480 3397 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2481 3398 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2482 3399 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2483 3400 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2484 3401 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2485 3402 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2486 3403 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2487 3404 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2511 3428 7.739498 TTTTTCCGTCCCATAATATAAGAGC 57.261 36.000 0.00 0.00 0.00 4.09
2512 3429 4.713824 TCCGTCCCATAATATAAGAGCG 57.286 45.455 0.00 0.00 0.00 5.03
2513 3430 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2514 3431 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2515 3432 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2516 3433 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2517 3434 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2518 3435 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2519 3436 7.360361 GTCCCATAATATAAGAGCGTTTTTGG 58.640 38.462 0.00 0.00 0.00 3.28
2520 3437 6.016610 TCCCATAATATAAGAGCGTTTTTGGC 60.017 38.462 0.00 0.00 0.00 4.52
2521 3438 6.238897 CCCATAATATAAGAGCGTTTTTGGCA 60.239 38.462 0.00 0.00 0.00 4.92
2522 3439 6.636850 CCATAATATAAGAGCGTTTTTGGCAC 59.363 38.462 0.00 0.00 0.00 5.01
2523 3440 5.897377 AATATAAGAGCGTTTTTGGCACT 57.103 34.783 0.00 0.00 32.60 4.40
2524 3441 3.559238 ATAAGAGCGTTTTTGGCACTG 57.441 42.857 0.00 0.00 31.64 3.66
2525 3442 0.385390 AAGAGCGTTTTTGGCACTGG 59.615 50.000 0.00 0.00 31.64 4.00
2549 3466 4.154195 CACTAGTGCCAAAAACGCTCTTAT 59.846 41.667 10.54 0.00 32.65 1.73
2559 3476 7.309194 GCCAAAAACGCTCTTATATTATGGGAT 60.309 37.037 0.00 0.00 0.00 3.85
2560 3477 8.023128 CCAAAAACGCTCTTATATTATGGGATG 58.977 37.037 0.00 0.00 0.00 3.51
2699 3647 7.531280 AGTCTTATCATTCTGTTGATTGACG 57.469 36.000 14.66 0.00 39.99 4.35
2708 3656 4.801891 TCTGTTGATTGACGTACTGTACC 58.198 43.478 12.08 0.29 0.00 3.34
2727 3675 1.466167 CCGTGAAAGATGCAAGGACAG 59.534 52.381 0.00 0.00 37.10 3.51
2733 3681 4.224594 TGAAAGATGCAAGGACAGAGAGAT 59.775 41.667 0.00 0.00 0.00 2.75
2737 3685 3.510388 TGCAAGGACAGAGAGATAACG 57.490 47.619 0.00 0.00 0.00 3.18
2742 3690 5.592054 CAAGGACAGAGAGATAACGCAATA 58.408 41.667 0.00 0.00 0.00 1.90
2784 3732 0.179020 TGCTGCCACCTGCCATATAC 60.179 55.000 0.00 0.00 40.16 1.47
2804 3753 2.698274 ACCCATTTGTGTTTGGAAGGTC 59.302 45.455 0.00 0.00 34.81 3.85
2806 3755 3.387699 CCCATTTGTGTTTGGAAGGTCTT 59.612 43.478 0.00 0.00 34.81 3.01
2807 3756 4.586841 CCCATTTGTGTTTGGAAGGTCTTA 59.413 41.667 0.00 0.00 34.81 2.10
2808 3757 5.245977 CCCATTTGTGTTTGGAAGGTCTTAT 59.754 40.000 0.00 0.00 34.81 1.73
2809 3758 6.239572 CCCATTTGTGTTTGGAAGGTCTTATT 60.240 38.462 0.00 0.00 34.81 1.40
2811 3760 8.364142 CCATTTGTGTTTGGAAGGTCTTATTTA 58.636 33.333 0.00 0.00 34.81 1.40
2812 3761 9.927668 CATTTGTGTTTGGAAGGTCTTATTTAT 57.072 29.630 0.00 0.00 0.00 1.40
2813 3762 9.927668 ATTTGTGTTTGGAAGGTCTTATTTATG 57.072 29.630 0.00 0.00 0.00 1.90
2814 3763 8.472007 TTGTGTTTGGAAGGTCTTATTTATGT 57.528 30.769 0.00 0.00 0.00 2.29
2815 3764 9.575868 TTGTGTTTGGAAGGTCTTATTTATGTA 57.424 29.630 0.00 0.00 0.00 2.29
2816 3765 9.226606 TGTGTTTGGAAGGTCTTATTTATGTAG 57.773 33.333 0.00 0.00 0.00 2.74
2817 3766 9.444600 GTGTTTGGAAGGTCTTATTTATGTAGA 57.555 33.333 0.00 0.00 0.00 2.59
2857 3806 6.723298 ATATTGCCCAAAATCCGTTGAATA 57.277 33.333 0.00 0.00 0.00 1.75
2864 3813 7.339721 TGCCCAAAATCCGTTGAATACTTTATA 59.660 33.333 0.00 0.00 0.00 0.98
2962 4226 7.213216 TCTGCATGAAGTTATTGTGCTTTAA 57.787 32.000 0.00 0.00 36.78 1.52
2965 4229 9.571810 CTGCATGAAGTTATTGTGCTTTAATAA 57.428 29.630 0.00 0.00 36.78 1.40
2987 4251 9.825972 AATAACTGATGATTGTTTTGACTAACG 57.174 29.630 0.00 0.00 0.00 3.18
2990 4254 4.457603 TGATGATTGTTTTGACTAACGGGG 59.542 41.667 0.00 0.00 0.00 5.73
3029 5352 7.450074 ACCAGAGTATGTTTGATCACTTAACA 58.550 34.615 12.57 12.57 36.35 2.41
3130 5470 2.713167 TCCTGATGGGATGGATTCTTCC 59.287 50.000 0.00 0.00 39.58 3.46
3131 5471 2.715336 CCTGATGGGATGGATTCTTCCT 59.285 50.000 5.92 0.00 39.11 3.36
3219 5573 5.831786 GCACATTGCACGTATTTTTACTTG 58.168 37.500 0.00 0.00 44.26 3.16
3222 5576 7.113684 GCACATTGCACGTATTTTTACTTGTAA 59.886 33.333 0.00 0.00 44.26 2.41
3310 5664 3.628646 CTCCCTTGGCCAGAACCCG 62.629 68.421 5.11 0.00 0.00 5.28
3529 5883 1.679898 CAACCTCGGGGAGAAGCTT 59.320 57.895 9.33 0.00 36.25 3.74
3635 5992 0.467290 GGCCAAGTGAGGAACAACCA 60.467 55.000 0.00 0.00 42.04 3.67
3664 6022 8.857694 TCTGAAATAACCCTTTCTATTTTCGT 57.142 30.769 0.00 0.00 36.34 3.85
3687 6045 0.606604 ATAACGAACCGTCTGGCACT 59.393 50.000 0.00 0.00 39.99 4.40
3855 6218 3.802866 TGGATTTGGTGTTTTTCTTGGC 58.197 40.909 0.00 0.00 0.00 4.52
3864 6227 1.134551 GTTTTTCTTGGCTGGGTTGCA 60.135 47.619 0.00 0.00 34.04 4.08
3958 6329 4.263443 GCTATCTGACTCTCGTTTTCGTTC 59.737 45.833 0.00 0.00 44.46 3.95
4011 6382 6.483385 TTGGAATTTTCGAACTGCGTTATA 57.517 33.333 0.00 0.00 41.80 0.98
4015 6386 7.493320 TGGAATTTTCGAACTGCGTTATATAGT 59.507 33.333 0.00 0.00 41.80 2.12
4022 6393 2.131972 CTGCGTTATATAGTTGCGGCA 58.868 47.619 0.00 0.00 0.00 5.69
4026 6397 4.171005 GCGTTATATAGTTGCGGCATAGA 58.829 43.478 2.28 0.00 0.00 1.98
4090 6485 2.738521 GTCGTGCGTGCCACAGAT 60.739 61.111 0.00 0.00 44.91 2.90
4115 6510 1.209898 CGTAGCCCGTTGTCACGTA 59.790 57.895 0.00 0.00 45.62 3.57
4116 6511 1.067199 CGTAGCCCGTTGTCACGTAC 61.067 60.000 0.00 0.00 45.62 3.67
4117 6512 0.242017 GTAGCCCGTTGTCACGTACT 59.758 55.000 0.00 0.00 45.62 2.73
4283 6738 2.815211 CGACATGGCCAGTGGACG 60.815 66.667 15.20 11.73 29.56 4.79
4354 6809 4.758773 ATATGCCATCCAAACCCTTTTG 57.241 40.909 0.00 0.00 41.71 2.44
4408 6863 8.132362 AGCTTTTATTCGTTGTTTATGTTGTGA 58.868 29.630 0.00 0.00 0.00 3.58
4425 6880 7.956420 TGTTGTGATCGTATAAAGTGAAAGT 57.044 32.000 0.00 0.00 0.00 2.66
4433 6888 4.150980 CGTATAAAGTGAAAGTTCGTGGCA 59.849 41.667 0.00 0.00 0.00 4.92
4457 6912 4.631813 GCGAAAGAGCTCAAGAAAAGGATA 59.368 41.667 17.77 0.00 0.00 2.59
4467 6922 7.595502 AGCTCAAGAAAAGGATATATTCGTACG 59.404 37.037 9.53 9.53 0.00 3.67
4721 7184 4.250464 AGCATGCTTGACAATTTTCATGG 58.750 39.130 16.30 1.61 33.81 3.66
4727 7190 4.502950 GCTTGACAATTTTCATGGGGAACA 60.503 41.667 8.93 0.00 34.56 3.18
4742 7205 3.477530 GGGAACAGAGCAGTAGTGTTTT 58.522 45.455 0.00 0.00 34.55 2.43
4914 7383 8.337532 GTTGGGATTTTTCTGACATTTCAAAAG 58.662 33.333 0.00 0.00 0.00 2.27
4916 7385 8.700051 TGGGATTTTTCTGACATTTCAAAAGTA 58.300 29.630 0.00 0.00 0.00 2.24
4956 7425 2.099405 GGGAGCGAAATTGGATTTCCA 58.901 47.619 7.58 0.00 44.40 3.53
4987 7456 6.697019 GCTTATGCATATGTAAACCCTGTTTG 59.303 38.462 17.98 0.00 39.41 2.93
5047 7522 3.695606 TCGGCCAAGAAGAGCGCT 61.696 61.111 11.27 11.27 0.00 5.92
5106 7584 2.690497 TCCTCTAGCTGAAACCATCGAG 59.310 50.000 0.00 0.00 0.00 4.04
5255 7739 8.040716 ACCATTCTCAAGGTAAACGAATAAAG 57.959 34.615 0.00 0.00 36.07 1.85
5256 7740 7.664318 ACCATTCTCAAGGTAAACGAATAAAGT 59.336 33.333 0.00 0.00 36.07 2.66
5263 7747 6.481954 AGGTAAACGAATAAAGTTGCTCTG 57.518 37.500 0.00 0.00 31.43 3.35
5293 7777 7.807977 TGCAGAAAAAGAAGAAAGTGTAGAT 57.192 32.000 0.00 0.00 0.00 1.98
5339 7823 6.967199 AGACTTTTGTTTCGAATCAAAGTGAC 59.033 34.615 25.28 21.56 35.47 3.67
5413 7897 0.179103 AACGGTTCGGACAAGACGTT 60.179 50.000 3.17 3.17 39.38 3.99
5549 8035 2.099263 ACCATGTAGAATCGTCTCACGG 59.901 50.000 0.00 0.00 42.81 4.94
5559 8045 1.153549 GTCTCACGGTCATCCAGGC 60.154 63.158 0.00 0.00 0.00 4.85
5612 8098 8.093927 TCCAAAAAGTTCTTCATGAAAACTTGT 58.906 29.630 29.05 25.18 41.17 3.16
5706 8195 3.528597 AACTTCCTCTAATCACCGCTC 57.471 47.619 0.00 0.00 0.00 5.03
5742 8231 6.385176 TCCATCATCTTGATTAAGTCACCTCT 59.615 38.462 0.00 0.00 34.28 3.69
5757 8246 3.072476 TCACCTCTAAAAACTCTGTGGGG 59.928 47.826 0.00 0.00 0.00 4.96
5815 8320 6.455647 CCAGTGGGAAAAATAAGGAGAAAAC 58.544 40.000 0.00 0.00 35.59 2.43
6011 8519 7.145932 CTTGTAAAGTAAACTCATGAAGGGG 57.854 40.000 0.00 0.00 39.70 4.79
6056 8564 5.772825 TGAACAAGAACAATTCAGGAAGG 57.227 39.130 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.970640 TTGACGAAACATCCCCTCGA 59.029 50.000 0.00 0.00 36.45 4.04
64 69 2.166254 GTCCCGATAACTTTGGTACGGA 59.834 50.000 0.00 0.00 38.22 4.69
287 304 6.198650 TCTATAGAATTCGAACAACGGTCA 57.801 37.500 0.00 0.00 42.82 4.02
550 569 5.046878 ACCACTAGGATTCGAACACACAATA 60.047 40.000 0.00 0.00 38.69 1.90
589 611 0.948678 TGGCGCGTAAAAAGAGCTTT 59.051 45.000 8.43 0.00 34.82 3.51
785 849 4.505039 GGTTCACCTTCAGCTTTTCTCCTA 60.505 45.833 0.00 0.00 0.00 2.94
786 850 3.481453 GTTCACCTTCAGCTTTTCTCCT 58.519 45.455 0.00 0.00 0.00 3.69
788 852 2.224314 CGGTTCACCTTCAGCTTTTCTC 59.776 50.000 0.00 0.00 0.00 2.87
789 853 2.222027 CGGTTCACCTTCAGCTTTTCT 58.778 47.619 0.00 0.00 0.00 2.52
790 854 1.266989 CCGGTTCACCTTCAGCTTTTC 59.733 52.381 0.00 0.00 0.00 2.29
791 855 1.133915 TCCGGTTCACCTTCAGCTTTT 60.134 47.619 0.00 0.00 0.00 2.27
792 856 0.472471 TCCGGTTCACCTTCAGCTTT 59.528 50.000 0.00 0.00 0.00 3.51
793 857 0.693049 ATCCGGTTCACCTTCAGCTT 59.307 50.000 0.00 0.00 0.00 3.74
794 858 0.036010 CATCCGGTTCACCTTCAGCT 60.036 55.000 0.00 0.00 0.00 4.24
795 859 1.648467 GCATCCGGTTCACCTTCAGC 61.648 60.000 0.00 0.00 0.00 4.26
796 860 1.026718 GGCATCCGGTTCACCTTCAG 61.027 60.000 0.00 0.00 0.00 3.02
797 861 1.002624 GGCATCCGGTTCACCTTCA 60.003 57.895 0.00 0.00 0.00 3.02
803 867 0.608035 GTTTCTGGGCATCCGGTTCA 60.608 55.000 0.00 0.00 40.36 3.18
851 918 4.525100 GGCTTTATAGAGGAAGAGGATCGT 59.475 45.833 0.00 0.00 42.67 3.73
973 1041 1.152922 GAGACCTCGAGGGGACGAT 60.153 63.158 34.04 13.29 41.39 3.73
977 1045 2.436596 AAACGGAGACCTCGAGGGGA 62.437 60.000 34.04 0.00 40.27 4.81
981 1049 1.446272 GGCAAACGGAGACCTCGAG 60.446 63.158 5.13 5.13 0.00 4.04
992 1060 4.114997 GGTCCGCCATGGCAAACG 62.115 66.667 34.93 19.06 42.06 3.60
1137 1248 4.664677 GGGCCGGATCGATCGTGG 62.665 72.222 23.85 23.85 0.00 4.94
1213 1402 2.757314 CGCTATCAGATCTAGGCATCCA 59.243 50.000 0.00 0.00 0.00 3.41
1214 1403 2.757868 ACGCTATCAGATCTAGGCATCC 59.242 50.000 0.00 0.00 0.00 3.51
1215 1404 3.768406 CACGCTATCAGATCTAGGCATC 58.232 50.000 0.00 0.00 0.00 3.91
1216 1405 2.094286 GCACGCTATCAGATCTAGGCAT 60.094 50.000 0.00 0.00 0.00 4.40
1217 1406 1.270826 GCACGCTATCAGATCTAGGCA 59.729 52.381 0.00 0.00 0.00 4.75
1218 1407 1.403514 GGCACGCTATCAGATCTAGGC 60.404 57.143 0.00 0.00 0.00 3.93
1219 1408 2.645730 GGCACGCTATCAGATCTAGG 57.354 55.000 0.00 0.00 0.00 3.02
1286 1556 5.163953 CGCCTCGATTACAATAATTAGCCAG 60.164 44.000 0.00 0.00 0.00 4.85
1292 1562 3.498397 CAGGCGCCTCGATTACAATAATT 59.502 43.478 30.29 0.00 0.00 1.40
1293 1563 3.067106 CAGGCGCCTCGATTACAATAAT 58.933 45.455 30.29 0.00 0.00 1.28
1298 1568 1.153647 CACAGGCGCCTCGATTACA 60.154 57.895 30.29 0.00 0.00 2.41
1396 1666 0.171007 GCACACCGCAATGCATAACT 59.829 50.000 5.91 0.00 41.65 2.24
1401 1671 3.131196 AAACGCACACCGCAATGCA 62.131 52.632 5.91 0.00 42.17 3.96
1408 1678 0.098025 AGAAACACAAACGCACACCG 59.902 50.000 0.00 0.00 44.21 4.94
1420 1690 4.215613 CCCAAACAGTAAGCCTAGAAACAC 59.784 45.833 0.00 0.00 0.00 3.32
1421 1691 4.141344 ACCCAAACAGTAAGCCTAGAAACA 60.141 41.667 0.00 0.00 0.00 2.83
1422 1692 4.215613 CACCCAAACAGTAAGCCTAGAAAC 59.784 45.833 0.00 0.00 0.00 2.78
1423 1693 4.394729 CACCCAAACAGTAAGCCTAGAAA 58.605 43.478 0.00 0.00 0.00 2.52
1424 1694 3.244770 CCACCCAAACAGTAAGCCTAGAA 60.245 47.826 0.00 0.00 0.00 2.10
1426 1696 2.711542 CCACCCAAACAGTAAGCCTAG 58.288 52.381 0.00 0.00 0.00 3.02
1427 1697 1.271707 GCCACCCAAACAGTAAGCCTA 60.272 52.381 0.00 0.00 0.00 3.93
1428 1698 0.539669 GCCACCCAAACAGTAAGCCT 60.540 55.000 0.00 0.00 0.00 4.58
1435 1730 1.110442 TTCACAAGCCACCCAAACAG 58.890 50.000 0.00 0.00 0.00 3.16
1436 1731 1.561643 TTTCACAAGCCACCCAAACA 58.438 45.000 0.00 0.00 0.00 2.83
1448 1743 5.474532 CCTTGTTCCTGAGATCATTTCACAA 59.525 40.000 0.00 0.00 0.00 3.33
1492 1788 7.230849 TGACAGATATCCAAACAGCAAATTT 57.769 32.000 0.00 0.00 0.00 1.82
1531 1827 3.192844 TCAGTTCCCAGCTACGTTCTAAG 59.807 47.826 0.00 0.00 0.00 2.18
1533 1829 2.799017 TCAGTTCCCAGCTACGTTCTA 58.201 47.619 0.00 0.00 0.00 2.10
1536 1832 1.692519 ACTTCAGTTCCCAGCTACGTT 59.307 47.619 0.00 0.00 0.00 3.99
1543 1839 2.260844 TTCTGCACTTCAGTTCCCAG 57.739 50.000 0.00 0.00 43.32 4.45
1580 1876 3.779738 CCCCAAATAACATTGACCCCAAT 59.220 43.478 0.00 0.00 43.37 3.16
1645 1955 7.703058 AAAAAGGATGTAATTACCAGGTCTG 57.297 36.000 13.01 0.00 0.00 3.51
1783 2093 4.387256 GCAGCGACATCTAAGGAATATGAC 59.613 45.833 0.00 0.00 0.00 3.06
1787 2097 4.342378 AGAAGCAGCGACATCTAAGGAATA 59.658 41.667 0.00 0.00 0.00 1.75
1802 2112 0.985549 CAGACGTAACGAGAAGCAGC 59.014 55.000 0.00 0.00 0.00 5.25
1850 2164 3.932710 TGTCTATGCTAAACTGAAAGGCG 59.067 43.478 0.00 0.00 39.30 5.52
1854 2168 6.150976 CCCATGTTGTCTATGCTAAACTGAAA 59.849 38.462 0.00 0.00 0.00 2.69
1868 2182 3.420893 CCACATTACACCCATGTTGTCT 58.579 45.455 0.62 0.00 40.48 3.41
1875 2189 0.704076 ACAGCCCACATTACACCCAT 59.296 50.000 0.00 0.00 0.00 4.00
1984 2298 8.167392 TCCTCCATGACCACTTCTTTTATTTTA 58.833 33.333 0.00 0.00 0.00 1.52
1989 2303 4.844085 TCTCCTCCATGACCACTTCTTTTA 59.156 41.667 0.00 0.00 0.00 1.52
1990 2304 3.652869 TCTCCTCCATGACCACTTCTTTT 59.347 43.478 0.00 0.00 0.00 2.27
2060 2374 8.745837 GCTTCAATTGAATTATTGAACGGTATG 58.254 33.333 20.76 5.15 45.02 2.39
2062 2376 7.254852 GGCTTCAATTGAATTATTGAACGGTA 58.745 34.615 20.76 0.00 45.02 4.02
2113 2465 7.599998 CAGTTTGAAACAAAATATTCAGGAGGG 59.400 37.037 11.02 0.00 36.93 4.30
2150 2506 7.523415 TCCAAACTACCTAAAGAATTCTGGTT 58.477 34.615 18.23 9.00 32.74 3.67
2160 2516 9.840427 CACATTTTACATCCAAACTACCTAAAG 57.160 33.333 0.00 0.00 0.00 1.85
2203 2559 3.619483 CAGAAACACCAGTTCAACGTACA 59.381 43.478 0.00 0.00 36.84 2.90
2322 3150 0.178992 AGGCAGCAGCTTTACCACAA 60.179 50.000 0.00 0.00 41.70 3.33
2326 3154 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2328 3156 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2330 3158 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2331 3159 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2352 3269 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2354 3271 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2356 3273 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2358 3275 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2359 3276 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2364 3281 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2365 3282 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2367 3284 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2382 3299 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2383 3300 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2384 3301 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2385 3302 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2386 3303 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2387 3304 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2388 3305 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2389 3306 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2390 3307 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2391 3308 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2392 3309 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2393 3310 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2394 3311 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2395 3312 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2396 3313 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2397 3314 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2398 3315 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2399 3316 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2400 3317 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2401 3318 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2402 3319 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2403 3320 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2404 3321 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2405 3322 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2406 3323 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2407 3324 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2408 3325 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2418 3335 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2419 3336 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2420 3337 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2421 3338 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2422 3339 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2423 3340 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2424 3341 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2425 3342 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2426 3343 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2427 3344 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2428 3345 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2429 3346 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2430 3347 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2431 3348 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2432 3349 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2433 3350 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2434 3351 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2435 3352 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2436 3353 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2448 3365 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2451 3368 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2452 3369 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2453 3370 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2454 3371 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2460 3377 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2461 3378 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2462 3379 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2463 3380 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2464 3381 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2487 3404 6.425721 CGCTCTTATATTATGGGACGGAAAAA 59.574 38.462 0.00 0.00 0.00 1.94
2488 3405 5.929992 CGCTCTTATATTATGGGACGGAAAA 59.070 40.000 0.00 0.00 0.00 2.29
2489 3406 5.011329 ACGCTCTTATATTATGGGACGGAAA 59.989 40.000 0.00 0.00 0.00 3.13
2490 3407 4.525487 ACGCTCTTATATTATGGGACGGAA 59.475 41.667 0.00 0.00 0.00 4.30
2493 3410 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2503 3420 3.438781 CCAGTGCCAAAAACGCTCTTATA 59.561 43.478 0.00 0.00 0.00 0.98
2504 3421 2.228822 CCAGTGCCAAAAACGCTCTTAT 59.771 45.455 0.00 0.00 0.00 1.73
2505 3422 1.606668 CCAGTGCCAAAAACGCTCTTA 59.393 47.619 0.00 0.00 0.00 2.10
2506 3423 0.385390 CCAGTGCCAAAAACGCTCTT 59.615 50.000 0.00 0.00 0.00 2.85
2507 3424 2.032981 CCAGTGCCAAAAACGCTCT 58.967 52.632 0.00 0.00 0.00 4.09
2508 3425 1.661509 GCCAGTGCCAAAAACGCTC 60.662 57.895 0.00 0.00 0.00 5.03
2509 3426 2.417097 GCCAGTGCCAAAAACGCT 59.583 55.556 0.00 0.00 0.00 5.07
2510 3427 2.105930 TGCCAGTGCCAAAAACGC 59.894 55.556 0.00 0.00 36.33 4.84
2511 3428 0.665835 TAGTGCCAGTGCCAAAAACG 59.334 50.000 0.00 0.00 36.33 3.60
2512 3429 1.681264 ACTAGTGCCAGTGCCAAAAAC 59.319 47.619 0.00 0.00 36.33 2.43
2513 3430 1.680735 CACTAGTGCCAGTGCCAAAAA 59.319 47.619 10.54 0.00 39.54 1.94
2514 3431 1.317613 CACTAGTGCCAGTGCCAAAA 58.682 50.000 10.54 0.00 39.54 2.44
2515 3432 3.019964 CACTAGTGCCAGTGCCAAA 57.980 52.632 10.54 0.00 39.54 3.28
2516 3433 4.798433 CACTAGTGCCAGTGCCAA 57.202 55.556 10.54 0.00 39.54 4.52
2534 3451 7.504924 TCCCATAATATAAGAGCGTTTTTGG 57.495 36.000 0.00 0.00 0.00 3.28
2541 3458 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
2542 3459 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
2543 3460 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
2549 3466 5.633473 ACTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
2559 3476 4.665957 AGAAGCTATCTACTACTCCCTCCA 59.334 45.833 0.00 0.00 36.32 3.86
2560 3477 5.251182 AGAAGCTATCTACTACTCCCTCC 57.749 47.826 0.00 0.00 36.32 4.30
2673 3590 9.087424 CGTCAATCAACAGAATGATAAGACTTA 57.913 33.333 14.96 0.00 39.89 2.24
2674 3591 7.604164 ACGTCAATCAACAGAATGATAAGACTT 59.396 33.333 14.96 0.00 39.89 3.01
2675 3592 7.099764 ACGTCAATCAACAGAATGATAAGACT 58.900 34.615 14.96 5.74 39.89 3.24
2676 3593 7.295952 ACGTCAATCAACAGAATGATAAGAC 57.704 36.000 10.38 10.38 39.08 3.01
2677 3594 8.251026 AGTACGTCAATCAACAGAATGATAAGA 58.749 33.333 0.00 0.00 39.08 2.10
2678 3595 8.323854 CAGTACGTCAATCAACAGAATGATAAG 58.676 37.037 0.00 0.00 39.08 1.73
2679 3596 7.817478 ACAGTACGTCAATCAACAGAATGATAA 59.183 33.333 0.00 0.00 39.08 1.75
2680 3597 7.320399 ACAGTACGTCAATCAACAGAATGATA 58.680 34.615 0.00 0.00 39.08 2.15
2681 3598 6.166279 ACAGTACGTCAATCAACAGAATGAT 58.834 36.000 0.00 0.00 41.74 2.45
2682 3599 5.538118 ACAGTACGTCAATCAACAGAATGA 58.462 37.500 0.00 0.00 39.69 2.57
2683 3600 5.845985 ACAGTACGTCAATCAACAGAATG 57.154 39.130 0.00 0.00 46.00 2.67
2684 3601 5.867716 GGTACAGTACGTCAATCAACAGAAT 59.132 40.000 4.58 0.00 0.00 2.40
2685 3602 5.224888 GGTACAGTACGTCAATCAACAGAA 58.775 41.667 4.58 0.00 0.00 3.02
2686 3603 4.614306 CGGTACAGTACGTCAATCAACAGA 60.614 45.833 4.58 0.00 0.00 3.41
2687 3604 3.606777 CGGTACAGTACGTCAATCAACAG 59.393 47.826 4.58 0.00 0.00 3.16
2699 3647 3.581755 TGCATCTTTCACGGTACAGTAC 58.418 45.455 1.59 1.59 0.00 2.73
2708 3656 2.414481 CTCTGTCCTTGCATCTTTCACG 59.586 50.000 0.00 0.00 0.00 4.35
2727 3675 5.502544 GCAGGTGTTTATTGCGTTATCTCTC 60.503 44.000 0.00 0.00 0.00 3.20
2733 3681 3.127895 GGATGCAGGTGTTTATTGCGTTA 59.872 43.478 0.00 0.00 40.62 3.18
2737 3685 4.981806 TTAGGATGCAGGTGTTTATTGC 57.018 40.909 0.00 0.00 38.30 3.56
2742 3690 6.183360 GCAGATAAATTAGGATGCAGGTGTTT 60.183 38.462 0.00 0.00 33.92 2.83
2784 3732 2.965147 AGACCTTCCAAACACAAATGGG 59.035 45.455 0.00 0.00 37.31 4.00
2815 3764 9.154847 GGCAATATTTTGAAACAGCTTATTTCT 57.845 29.630 17.17 4.26 37.05 2.52
2816 3765 8.390354 GGGCAATATTTTGAAACAGCTTATTTC 58.610 33.333 11.70 11.70 36.73 2.17
2817 3766 7.882271 TGGGCAATATTTTGAAACAGCTTATTT 59.118 29.630 0.00 0.00 34.60 1.40
2818 3767 7.393216 TGGGCAATATTTTGAAACAGCTTATT 58.607 30.769 0.00 0.00 34.60 1.40
2819 3768 6.945218 TGGGCAATATTTTGAAACAGCTTAT 58.055 32.000 0.00 0.00 34.60 1.73
2820 3769 6.352016 TGGGCAATATTTTGAAACAGCTTA 57.648 33.333 0.00 0.00 34.60 3.09
2821 3770 5.226194 TGGGCAATATTTTGAAACAGCTT 57.774 34.783 0.00 0.00 34.60 3.74
2822 3771 4.888326 TGGGCAATATTTTGAAACAGCT 57.112 36.364 0.00 0.00 34.60 4.24
2823 3772 5.938438 TTTGGGCAATATTTTGAAACAGC 57.062 34.783 0.00 0.00 34.60 4.40
2824 3773 7.529158 GGATTTTGGGCAATATTTTGAAACAG 58.471 34.615 0.00 0.00 34.60 3.16
2825 3774 6.148480 CGGATTTTGGGCAATATTTTGAAACA 59.852 34.615 0.00 0.00 34.60 2.83
2826 3775 6.148645 ACGGATTTTGGGCAATATTTTGAAAC 59.851 34.615 0.00 0.00 34.60 2.78
2827 3776 6.234177 ACGGATTTTGGGCAATATTTTGAAA 58.766 32.000 0.00 0.00 34.60 2.69
2828 3777 5.799213 ACGGATTTTGGGCAATATTTTGAA 58.201 33.333 0.00 0.00 34.60 2.69
2829 3778 5.413309 ACGGATTTTGGGCAATATTTTGA 57.587 34.783 0.00 0.00 34.60 2.69
2830 3779 5.641209 TCAACGGATTTTGGGCAATATTTTG 59.359 36.000 0.00 0.00 35.85 2.44
2831 3780 5.799213 TCAACGGATTTTGGGCAATATTTT 58.201 33.333 0.00 0.00 0.00 1.82
2832 3781 5.413309 TCAACGGATTTTGGGCAATATTT 57.587 34.783 0.00 0.00 0.00 1.40
2833 3782 5.413309 TTCAACGGATTTTGGGCAATATT 57.587 34.783 0.00 0.00 0.00 1.28
2834 3783 5.612725 ATTCAACGGATTTTGGGCAATAT 57.387 34.783 0.00 0.00 0.00 1.28
2835 3784 5.654650 AGTATTCAACGGATTTTGGGCAATA 59.345 36.000 0.00 0.00 0.00 1.90
2836 3785 3.979101 ATTCAACGGATTTTGGGCAAT 57.021 38.095 0.00 0.00 0.00 3.56
2837 3786 3.829601 AGTATTCAACGGATTTTGGGCAA 59.170 39.130 0.00 0.00 0.00 4.52
2838 3787 3.426615 AGTATTCAACGGATTTTGGGCA 58.573 40.909 0.00 0.00 0.00 5.36
2839 3788 4.450082 AAGTATTCAACGGATTTTGGGC 57.550 40.909 0.00 0.00 0.00 5.36
2931 4139 9.903682 GCACAATAACTTCATGCAGAAATATAT 57.096 29.630 0.00 0.00 35.40 0.86
2933 4141 8.004087 AGCACAATAACTTCATGCAGAAATAT 57.996 30.769 0.00 0.00 38.79 1.28
2962 4226 8.450964 CCGTTAGTCAAAACAATCATCAGTTAT 58.549 33.333 0.00 0.00 0.00 1.89
2965 4229 5.181245 CCCGTTAGTCAAAACAATCATCAGT 59.819 40.000 0.00 0.00 0.00 3.41
2967 4231 4.457603 CCCCGTTAGTCAAAACAATCATCA 59.542 41.667 0.00 0.00 0.00 3.07
2968 4232 4.142469 CCCCCGTTAGTCAAAACAATCATC 60.142 45.833 0.00 0.00 0.00 2.92
2969 4233 3.761752 CCCCCGTTAGTCAAAACAATCAT 59.238 43.478 0.00 0.00 0.00 2.45
2973 4237 3.512219 ATCCCCCGTTAGTCAAAACAA 57.488 42.857 0.00 0.00 0.00 2.83
3029 5352 0.546122 TCACAGAACACCCAAGCTGT 59.454 50.000 0.00 0.00 41.90 4.40
3215 5568 5.307196 ACCTCATGGTAAGACAGTTACAAGT 59.693 40.000 0.00 0.00 46.43 3.16
3219 5573 4.504858 CCACCTCATGGTAAGACAGTTAC 58.495 47.826 0.00 0.00 46.60 2.50
3243 5597 3.314635 GGTGATGCTGCCTGAGAAATTAG 59.685 47.826 0.00 0.00 0.00 1.73
3451 5805 1.116308 TCTGGTCCTTGTCGAACACA 58.884 50.000 0.00 0.00 0.00 3.72
3529 5883 1.000486 CTCCTCCACCTCCTCGGAA 60.000 63.158 0.00 0.00 36.31 4.30
3635 5992 6.910259 ATAGAAAGGGTTATTTCAGAGGGT 57.090 37.500 2.41 0.00 40.86 4.34
3711 6069 5.672051 GCAGCGTGCACGTAATAATAATAA 58.328 37.500 36.80 0.00 44.26 1.40
3712 6070 5.258685 GCAGCGTGCACGTAATAATAATA 57.741 39.130 36.80 0.00 44.26 0.98
3713 6071 4.128554 GCAGCGTGCACGTAATAATAAT 57.871 40.909 36.80 11.69 44.26 1.28
3855 6218 1.619654 TGAACCAAGATGCAACCCAG 58.380 50.000 0.00 0.00 0.00 4.45
3864 6227 2.489329 CCGAACAAGCATGAACCAAGAT 59.511 45.455 0.00 0.00 0.00 2.40
3983 6354 4.555262 GCAGTTCGAAAATTCCAAATCCA 58.445 39.130 0.00 0.00 0.00 3.41
4011 6382 1.681793 ACGAGTCTATGCCGCAACTAT 59.318 47.619 0.00 0.00 0.00 2.12
4015 6386 0.248336 CGTACGAGTCTATGCCGCAA 60.248 55.000 10.44 0.00 0.00 4.85
4115 6510 1.555075 ACCAGGCATCACAATCGTAGT 59.445 47.619 0.00 0.00 0.00 2.73
4116 6511 2.205074 GACCAGGCATCACAATCGTAG 58.795 52.381 0.00 0.00 0.00 3.51
4117 6512 1.470805 CGACCAGGCATCACAATCGTA 60.471 52.381 0.00 0.00 0.00 3.43
4122 6517 0.888736 CAACCGACCAGGCATCACAA 60.889 55.000 0.00 0.00 46.52 3.33
4408 6863 5.063060 GCCACGAACTTTCACTTTATACGAT 59.937 40.000 0.00 0.00 0.00 3.73
4433 6888 2.810852 CCTTTTCTTGAGCTCTTTCGCT 59.189 45.455 16.19 0.00 44.33 4.93
4440 6895 7.954788 ACGAATATATCCTTTTCTTGAGCTC 57.045 36.000 6.82 6.82 0.00 4.09
4452 6907 8.557864 CGAATAAGATCCGTACGAATATATCCT 58.442 37.037 18.76 4.24 0.00 3.24
4457 6912 8.807667 AAAACGAATAAGATCCGTACGAATAT 57.192 30.769 18.76 7.14 35.28 1.28
4467 6922 6.248631 CAAACCGAGAAAACGAATAAGATCC 58.751 40.000 0.00 0.00 35.09 3.36
4521 6977 3.118482 AGAGCTCGTGTTCATCCATTGAT 60.118 43.478 8.37 0.00 33.34 2.57
4528 6984 1.658095 GCAGAAGAGCTCGTGTTCATC 59.342 52.381 6.97 1.61 30.53 2.92
4532 6988 0.676184 TCTGCAGAAGAGCTCGTGTT 59.324 50.000 15.67 0.00 34.99 3.32
4611 7073 1.668419 ACTATTTCATGCGGGAGTGC 58.332 50.000 0.00 0.00 0.00 4.40
4669 7131 7.620215 CACTAACACAAACATCCAACAAAATG 58.380 34.615 0.00 0.00 0.00 2.32
4675 7137 4.041723 GTGCACTAACACAAACATCCAAC 58.958 43.478 10.32 0.00 40.40 3.77
4709 7172 3.259123 GCTCTGTTCCCCATGAAAATTGT 59.741 43.478 0.00 0.00 33.94 2.71
4721 7184 2.841442 AACACTACTGCTCTGTTCCC 57.159 50.000 0.00 0.00 0.00 3.97
4727 7190 2.102588 ACCGACAAAACACTACTGCTCT 59.897 45.455 0.00 0.00 0.00 4.09
4770 7237 8.918961 TTAGACACCAAATGTTACACAAAAAG 57.081 30.769 0.00 0.00 43.56 2.27
4902 7371 7.522555 CGTGCGAAAAATTACTTTTGAAATGTC 59.477 33.333 0.00 0.00 37.36 3.06
4956 7425 5.238650 GGTTTACATATGCATAAGCCTTCGT 59.761 40.000 11.13 2.71 41.13 3.85
4987 7456 3.028130 CCTCTTCTCCCTTCTCCTACAC 58.972 54.545 0.00 0.00 0.00 2.90
5073 7551 5.933617 TCAGCTAGAGGATTATGCATTTGT 58.066 37.500 3.54 0.00 0.00 2.83
5106 7584 1.227999 ACCACACACACTATGCACGC 61.228 55.000 0.00 0.00 0.00 5.34
5255 7739 1.586422 TCTGCAAGACACAGAGCAAC 58.414 50.000 0.00 0.00 38.67 4.17
5293 7777 4.752879 GCTCCGCCACGCCTTGTA 62.753 66.667 0.00 0.00 0.00 2.41
5339 7823 6.218746 TGTAACCATCGATGAGATCAATCAG 58.781 40.000 26.86 8.10 37.52 2.90
5383 7867 0.526954 CGAACCGTTGTATCCCTCCG 60.527 60.000 0.00 0.00 0.00 4.63
5549 8035 1.147153 GTAGCCCTGCCTGGATGAC 59.853 63.158 0.00 0.00 38.35 3.06
5559 8045 6.360618 AGAATCTTTTAAGATGGTAGCCCTG 58.639 40.000 5.78 0.00 44.67 4.45
5612 8098 6.826231 TGTGAGTTTATGTTTCAGGTTCTCAA 59.174 34.615 0.00 0.00 32.56 3.02
5656 8142 9.383519 TCTTGAGATATCCTTGTTTTATGACAC 57.616 33.333 0.00 0.00 0.00 3.67
5686 8172 2.159226 CGAGCGGTGATTAGAGGAAGTT 60.159 50.000 0.00 0.00 0.00 2.66
5706 8195 7.902387 ATCAAGATGATGGATTCTTATGACG 57.098 36.000 0.00 0.00 35.43 4.35
5737 8226 3.323775 TCCCCACAGAGTTTTTAGAGGT 58.676 45.455 0.00 0.00 0.00 3.85
5742 8231 7.396055 CCTCATATTTTCCCCACAGAGTTTTTA 59.604 37.037 0.00 0.00 0.00 1.52
5749 8238 4.111577 ACTCCTCATATTTTCCCCACAGA 58.888 43.478 0.00 0.00 0.00 3.41
5798 8303 7.381139 TGTTGCATCGTTTTCTCCTTATTTTTC 59.619 33.333 0.00 0.00 0.00 2.29
5815 8320 8.506437 AGACAATAACCATTATATGTTGCATCG 58.494 33.333 0.00 0.00 0.00 3.84
5912 8419 5.711698 ACTTTTTGTTTTCTCCATAGGGGA 58.288 37.500 0.00 0.00 45.89 4.81
5930 8438 7.886629 ACACAAGATCATATGCCATACTTTT 57.113 32.000 0.00 0.00 0.00 2.27
5981 8489 8.294341 TCATGAGTTTACTTTACAAGTTCTCG 57.706 34.615 0.00 0.00 42.81 4.04
6027 8535 7.039853 TCCTGAATTGTTCTTGTTCAATGCATA 60.040 33.333 0.00 0.00 38.44 3.14
6056 8564 5.431179 TTTGTAAGAATCAGGGGGAGTAC 57.569 43.478 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.