Multiple sequence alignment - TraesCS3B01G365100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G365100 chr3B 100.000 6916 0 0 1 6916 576455942 576449027 0.000000e+00 12772.0
1 TraesCS3B01G365100 chr3B 96.183 262 10 0 2046 2307 464610473 464610212 4.960000e-116 429.0
2 TraesCS3B01G365100 chr3B 97.727 44 1 0 122 165 576455762 576455719 7.440000e-10 76.8
3 TraesCS3B01G365100 chr3B 97.727 44 1 0 181 224 576455821 576455778 7.440000e-10 76.8
4 TraesCS3B01G365100 chr3A 92.831 2469 116 32 4486 6916 579379100 579376655 0.000000e+00 3522.0
5 TraesCS3B01G365100 chr3A 92.817 1782 57 36 288 2032 579383228 579381481 0.000000e+00 2516.0
6 TraesCS3B01G365100 chr3A 92.643 1169 57 12 3302 4444 579380353 579379188 0.000000e+00 1655.0
7 TraesCS3B01G365100 chr3A 95.428 853 34 3 2451 3301 579381363 579380514 0.000000e+00 1354.0
8 TraesCS3B01G365100 chr3A 90.615 309 17 7 3 302 579386822 579386517 3.890000e-107 399.0
9 TraesCS3B01G365100 chr3A 94.231 104 6 0 2349 2452 444462756 444462653 7.180000e-35 159.0
10 TraesCS3B01G365100 chr3A 97.727 44 1 0 181 224 579386701 579386658 7.440000e-10 76.8
11 TraesCS3B01G365100 chr3D 92.918 1892 58 36 181 2034 439683554 439681701 0.000000e+00 2682.0
12 TraesCS3B01G365100 chr3D 91.704 1350 70 21 4300 5638 439679489 439678171 0.000000e+00 1834.0
13 TraesCS3B01G365100 chr3D 93.853 846 48 4 2459 3301 439681671 439680827 0.000000e+00 1271.0
14 TraesCS3B01G365100 chr3D 89.710 758 66 6 3302 4049 439680667 439679912 0.000000e+00 957.0
15 TraesCS3B01G365100 chr3D 89.670 697 58 5 5639 6330 439678132 439677445 0.000000e+00 876.0
16 TraesCS3B01G365100 chr3D 83.779 524 46 19 6428 6916 439677446 439676927 1.760000e-125 460.0
17 TraesCS3B01G365100 chr3D 96.604 265 7 1 4037 4301 439679865 439679603 8.240000e-119 438.0
18 TraesCS3B01G365100 chr7B 91.423 513 40 2 2470 2978 703817111 703816599 0.000000e+00 701.0
19 TraesCS3B01G365100 chr7B 91.423 513 38 4 2471 2978 121028234 121027723 0.000000e+00 699.0
20 TraesCS3B01G365100 chr7B 90.373 509 44 3 2472 2976 26716632 26716125 0.000000e+00 664.0
21 TraesCS3B01G365100 chr7B 98.106 264 4 1 2043 2306 713286450 713286188 6.320000e-125 459.0
22 TraesCS3B01G365100 chr7B 96.578 263 9 0 2045 2307 464539953 464539691 2.960000e-118 436.0
23 TraesCS3B01G365100 chr7B 95.221 272 11 2 2037 2307 492756453 492756723 4.960000e-116 429.0
24 TraesCS3B01G365100 chr1B 91.211 512 40 3 2470 2978 654383244 654383753 0.000000e+00 691.0
25 TraesCS3B01G365100 chr6B 97.736 265 6 0 2043 2307 583188970 583189234 2.270000e-124 457.0
26 TraesCS3B01G365100 chr6B 96.629 267 9 0 2042 2308 550778186 550777920 1.770000e-120 444.0
27 TraesCS3B01G365100 chr6B 94.845 97 5 0 2352 2448 577173480 577173384 1.200000e-32 152.0
28 TraesCS3B01G365100 chr6B 94.845 97 5 0 2352 2448 605587356 605587260 1.200000e-32 152.0
29 TraesCS3B01G365100 chr7D 96.970 264 8 0 2043 2306 209183664 209183927 1.770000e-120 444.0
30 TraesCS3B01G365100 chr7D 89.024 328 31 3 2459 2782 504424387 504424061 1.080000e-107 401.0
31 TraesCS3B01G365100 chr7D 96.203 237 9 0 2874 3110 504424059 504423823 8.410000e-104 388.0
32 TraesCS3B01G365100 chr7D 86.792 265 21 7 1774 2034 504424672 504424418 4.080000e-72 283.0
33 TraesCS3B01G365100 chr1D 95.911 269 11 0 2039 2307 153918718 153918986 2.960000e-118 436.0
34 TraesCS3B01G365100 chr1D 92.308 104 8 0 2352 2455 37458231 37458334 1.550000e-31 148.0
35 TraesCS3B01G365100 chr4B 96.154 260 10 0 2048 2307 418510980 418510721 6.410000e-115 425.0
36 TraesCS3B01G365100 chr4D 95.918 98 4 0 2352 2449 494042372 494042469 7.180000e-35 159.0
37 TraesCS3B01G365100 chr2A 93.333 105 7 0 2351 2455 101847024 101846920 9.290000e-34 156.0
38 TraesCS3B01G365100 chr5B 93.269 104 5 2 2352 2453 316712701 316712598 1.200000e-32 152.0
39 TraesCS3B01G365100 chr4A 92.308 104 8 0 2352 2455 594133289 594133392 1.550000e-31 148.0
40 TraesCS3B01G365100 chr2B 92.308 104 8 0 2352 2455 768661125 768661022 1.550000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G365100 chr3B 576449027 576455942 6915 True 4308.533333 12772 98.484667 1 6916 3 chr3B.!!$R2 6915
1 TraesCS3B01G365100 chr3A 579376655 579386822 10167 True 1587.133333 3522 93.676833 3 6916 6 chr3A.!!$R2 6913
2 TraesCS3B01G365100 chr3D 439676927 439683554 6627 True 1216.857143 2682 91.176857 181 6916 7 chr3D.!!$R1 6735
3 TraesCS3B01G365100 chr7B 703816599 703817111 512 True 701.000000 701 91.423000 2470 2978 1 chr7B.!!$R4 508
4 TraesCS3B01G365100 chr7B 121027723 121028234 511 True 699.000000 699 91.423000 2471 2978 1 chr7B.!!$R2 507
5 TraesCS3B01G365100 chr7B 26716125 26716632 507 True 664.000000 664 90.373000 2472 2976 1 chr7B.!!$R1 504
6 TraesCS3B01G365100 chr1B 654383244 654383753 509 False 691.000000 691 91.211000 2470 2978 1 chr1B.!!$F1 508
7 TraesCS3B01G365100 chr7D 504423823 504424672 849 True 357.333333 401 90.673000 1774 3110 3 chr7D.!!$R1 1336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 3854 0.108207 AGGCAGGCATAGTGATGAGC 59.892 55.0 0.00 0.0 34.73 4.26 F
2366 5797 0.106167 CTCATACTCCCTCGGTCCCA 60.106 60.0 0.00 0.0 0.00 4.37 F
2449 5880 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.0 0.00 0.0 0.00 2.73 F
3014 6451 0.747283 CAGCAGTTGATCCTCAGGCC 60.747 60.0 0.00 0.0 0.00 5.19 F
4271 7954 1.098869 GGATCAGTCTCAGTCAGCGA 58.901 55.0 0.00 0.0 0.00 4.93 F
4967 8810 1.201429 AGGGCCCAACCTAGTGAGTG 61.201 60.0 27.56 0.0 39.65 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2430 5861 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R
4166 7841 2.200373 ACCCAAGAAACTTCCGATGG 57.800 50.000 0.00 0.0 0.00 3.51 R
4196 7879 3.836365 ACATTGGTCAAACAAAAGGGG 57.164 42.857 0.00 0.0 33.48 4.79 R
4978 8821 0.256752 ACATGCTCATAAGGGCTGCA 59.743 50.000 0.50 0.0 38.05 4.41 R
5786 9679 0.529378 GCATCTGCTGAAGGGTTTGG 59.471 55.000 0.00 0.0 38.21 3.28 R
6872 10834 0.032952 GCACCTGTAAGACGTGGTGA 59.967 55.000 21.02 0.0 43.33 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 71 9.537848 GTTTCATATTTGAGGTACTTGTTTACG 57.462 33.333 0.00 0.00 41.55 3.18
74 79 6.938507 TGAGGTACTTGTTTACGGTTATGAT 58.061 36.000 0.00 0.00 41.55 2.45
94 99 5.771469 TGATTTTGTATCAACAGCTTGTGG 58.229 37.500 0.00 0.00 36.83 4.17
102 107 7.201866 TTGTATCAACAGCTTGTGGTAACAAAT 60.202 33.333 0.00 0.00 43.15 2.32
124 129 8.877779 CAAATTGACACACTTGGTATTTTGAAA 58.122 29.630 0.00 0.00 0.00 2.69
125 130 9.612066 AAATTGACACACTTGGTATTTTGAAAT 57.388 25.926 0.00 0.00 0.00 2.17
127 132 9.912634 ATTGACACACTTGGTATTTTGAAATAG 57.087 29.630 0.00 0.00 31.94 1.73
128 133 8.684386 TGACACACTTGGTATTTTGAAATAGA 57.316 30.769 0.00 0.00 31.94 1.98
129 134 9.126151 TGACACACTTGGTATTTTGAAATAGAA 57.874 29.630 0.00 0.00 31.94 2.10
130 135 9.612620 GACACACTTGGTATTTTGAAATAGAAG 57.387 33.333 10.67 10.67 31.94 2.85
131 136 8.576442 ACACACTTGGTATTTTGAAATAGAAGG 58.424 33.333 14.02 8.96 31.71 3.46
132 137 8.792633 CACACTTGGTATTTTGAAATAGAAGGA 58.207 33.333 14.02 0.00 31.71 3.36
133 138 9.014297 ACACTTGGTATTTTGAAATAGAAGGAG 57.986 33.333 14.02 10.58 31.71 3.69
134 139 7.970614 CACTTGGTATTTTGAAATAGAAGGAGC 59.029 37.037 14.02 0.00 31.71 4.70
135 140 7.669722 ACTTGGTATTTTGAAATAGAAGGAGCA 59.330 33.333 14.02 3.11 31.71 4.26
136 141 8.593945 TTGGTATTTTGAAATAGAAGGAGCAT 57.406 30.769 0.00 0.00 31.94 3.79
137 142 8.593945 TGGTATTTTGAAATAGAAGGAGCATT 57.406 30.769 0.00 0.00 31.94 3.56
138 143 9.034800 TGGTATTTTGAAATAGAAGGAGCATTT 57.965 29.630 0.00 0.00 31.94 2.32
139 144 9.521503 GGTATTTTGAAATAGAAGGAGCATTTC 57.478 33.333 0.00 0.00 38.55 2.17
144 149 7.765695 TGAAATAGAAGGAGCATTTCAAACT 57.234 32.000 6.52 0.00 42.61 2.66
145 150 8.181904 TGAAATAGAAGGAGCATTTCAAACTT 57.818 30.769 6.52 0.00 42.61 2.66
146 151 8.641541 TGAAATAGAAGGAGCATTTCAAACTTT 58.358 29.630 6.52 0.00 42.61 2.66
147 152 9.481340 GAAATAGAAGGAGCATTTCAAACTTTT 57.519 29.630 0.00 0.00 38.16 2.27
148 153 8.822652 AATAGAAGGAGCATTTCAAACTTTTG 57.177 30.769 0.00 0.00 39.48 2.44
149 154 6.469782 AGAAGGAGCATTTCAAACTTTTGA 57.530 33.333 0.07 0.07 44.78 2.69
150 155 7.059202 AGAAGGAGCATTTCAAACTTTTGAT 57.941 32.000 5.26 0.00 45.65 2.57
151 156 7.503549 AGAAGGAGCATTTCAAACTTTTGATT 58.496 30.769 5.26 0.00 45.65 2.57
152 157 8.641541 AGAAGGAGCATTTCAAACTTTTGATTA 58.358 29.630 5.26 0.00 45.65 1.75
153 158 9.260002 GAAGGAGCATTTCAAACTTTTGATTAA 57.740 29.630 5.26 0.00 45.65 1.40
154 159 9.612066 AAGGAGCATTTCAAACTTTTGATTAAA 57.388 25.926 5.26 0.00 45.65 1.52
155 160 9.045223 AGGAGCATTTCAAACTTTTGATTAAAC 57.955 29.630 5.26 0.00 45.65 2.01
156 161 8.282592 GGAGCATTTCAAACTTTTGATTAAACC 58.717 33.333 5.26 3.01 45.65 3.27
157 162 8.962884 AGCATTTCAAACTTTTGATTAAACCT 57.037 26.923 5.26 0.00 45.65 3.50
158 163 8.829612 AGCATTTCAAACTTTTGATTAAACCTG 58.170 29.630 5.26 0.00 45.65 4.00
159 164 7.587392 GCATTTCAAACTTTTGATTAAACCTGC 59.413 33.333 5.26 2.53 45.65 4.85
160 165 7.546778 TTTCAAACTTTTGATTAAACCTGCC 57.453 32.000 5.26 0.00 45.65 4.85
161 166 6.478512 TCAAACTTTTGATTAAACCTGCCT 57.521 33.333 0.07 0.00 41.88 4.75
162 167 6.883744 TCAAACTTTTGATTAAACCTGCCTT 58.116 32.000 0.07 0.00 41.88 4.35
163 168 6.983890 TCAAACTTTTGATTAAACCTGCCTTC 59.016 34.615 0.07 0.00 41.88 3.46
164 169 6.731292 AACTTTTGATTAAACCTGCCTTCT 57.269 33.333 0.00 0.00 0.00 2.85
165 170 6.332735 ACTTTTGATTAAACCTGCCTTCTC 57.667 37.500 0.00 0.00 0.00 2.87
166 171 5.048713 ACTTTTGATTAAACCTGCCTTCTCG 60.049 40.000 0.00 0.00 0.00 4.04
167 172 2.356135 TGATTAAACCTGCCTTCTCGC 58.644 47.619 0.00 0.00 0.00 5.03
168 173 2.290008 TGATTAAACCTGCCTTCTCGCA 60.290 45.455 0.00 0.00 37.19 5.10
169 174 2.264005 TTAAACCTGCCTTCTCGCAA 57.736 45.000 0.00 0.00 38.56 4.85
170 175 2.264005 TAAACCTGCCTTCTCGCAAA 57.736 45.000 0.00 0.00 38.56 3.68
171 176 1.398692 AAACCTGCCTTCTCGCAAAA 58.601 45.000 0.00 0.00 38.56 2.44
172 177 1.398692 AACCTGCCTTCTCGCAAAAA 58.601 45.000 0.00 0.00 38.56 1.94
230 296 5.657302 TGGTTAAACCTGCCTTCTTTTTACA 59.343 36.000 0.00 0.00 39.58 2.41
269 337 4.689612 TCTTCAATAGTATGTCAGCCCC 57.310 45.455 0.00 0.00 0.00 5.80
302 3675 6.374333 TGCACATAAAACAGAGGGAGTATTTC 59.626 38.462 0.00 0.00 0.00 2.17
421 3794 2.977718 TTGCCCTGAAGCGGCCATA 61.978 57.895 2.24 0.00 46.48 2.74
425 3799 0.679640 CCCTGAAGCGGCCATACAAA 60.680 55.000 2.24 0.00 0.00 2.83
431 3805 3.181505 TGAAGCGGCCATACAAATTTACG 60.182 43.478 2.24 0.00 0.00 3.18
462 3836 2.449137 ATTCTTAAGCAGGCAGGCAT 57.551 45.000 0.00 0.00 35.83 4.40
472 3854 0.108207 AGGCAGGCATAGTGATGAGC 59.892 55.000 0.00 0.00 34.73 4.26
586 3968 1.285950 GGACTCGCAAAACCAAGGC 59.714 57.895 0.00 0.00 0.00 4.35
657 4041 3.039526 CTCCCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
661 4045 1.074850 CCCCTCCCTCCCTCTCTTC 60.075 68.421 0.00 0.00 0.00 2.87
700 4084 1.216710 GACTCTCCCAGCTTCCACG 59.783 63.158 0.00 0.00 0.00 4.94
719 4103 1.471676 CGGTTCCTCCTCTCATTTCCG 60.472 57.143 0.00 0.00 0.00 4.30
842 4230 3.896888 CAGGACATTCAGAGATCCTAGCT 59.103 47.826 0.00 0.00 39.66 3.32
844 4232 5.048083 CAGGACATTCAGAGATCCTAGCTAC 60.048 48.000 0.00 0.00 39.66 3.58
873 4262 1.000955 TCTTCCTCTGCCGTTCTTGAC 59.999 52.381 0.00 0.00 0.00 3.18
913 4302 2.494918 CGGCGTCGGAGAAGGAAT 59.505 61.111 0.00 0.00 39.69 3.01
934 4323 1.677217 CCCCTTGCTTCTTCCTCTTCG 60.677 57.143 0.00 0.00 0.00 3.79
937 4326 0.670546 TTGCTTCTTCCTCTTCGGCG 60.671 55.000 0.00 0.00 0.00 6.46
939 4328 1.592223 CTTCTTCCTCTTCGGCGGT 59.408 57.895 7.21 0.00 0.00 5.68
940 4329 0.737715 CTTCTTCCTCTTCGGCGGTG 60.738 60.000 7.21 0.00 0.00 4.94
943 4332 2.154798 CTTCCTCTTCGGCGGTGTGA 62.155 60.000 7.21 0.00 0.00 3.58
944 4333 2.125912 CCTCTTCGGCGGTGTGAG 60.126 66.667 7.21 9.45 0.00 3.51
946 4335 2.915659 TCTTCGGCGGTGTGAGGT 60.916 61.111 7.21 0.00 0.00 3.85
1026 4419 2.769120 TAGGCGAGGAGGAGGAGGG 61.769 68.421 0.00 0.00 0.00 4.30
1140 4539 2.990479 GCGACCAACCCCATCTCT 59.010 61.111 0.00 0.00 0.00 3.10
1141 4540 1.153349 GCGACCAACCCCATCTCTC 60.153 63.158 0.00 0.00 0.00 3.20
1410 4811 0.758734 CCGTGATGATTAGAGGGGCA 59.241 55.000 0.00 0.00 0.00 5.36
1425 4826 1.375098 GGGCAGAGCAGCTTTGCTAG 61.375 60.000 30.96 10.11 46.36 3.42
1426 4827 0.676151 GGCAGAGCAGCTTTGCTAGT 60.676 55.000 30.96 1.68 46.36 2.57
1427 4828 1.406069 GGCAGAGCAGCTTTGCTAGTA 60.406 52.381 30.96 0.00 46.36 1.82
1474 4875 1.009675 GGTTGCTGCTGTTCGTGTG 60.010 57.895 0.00 0.00 0.00 3.82
1475 4876 1.714899 GGTTGCTGCTGTTCGTGTGT 61.715 55.000 0.00 0.00 0.00 3.72
1476 4877 0.316196 GTTGCTGCTGTTCGTGTGTC 60.316 55.000 0.00 0.00 0.00 3.67
1477 4878 0.461870 TTGCTGCTGTTCGTGTGTCT 60.462 50.000 0.00 0.00 0.00 3.41
1478 4879 0.875908 TGCTGCTGTTCGTGTGTCTC 60.876 55.000 0.00 0.00 0.00 3.36
1631 5033 3.963374 CTGATCTCTGGGAATCAGTGGTA 59.037 47.826 4.56 0.00 43.76 3.25
1635 5037 2.432510 CTCTGGGAATCAGTGGTACTCC 59.567 54.545 0.00 0.00 43.76 3.85
1664 5066 4.520492 GTCCAGATCTTCAGAAAAAGGCAA 59.480 41.667 0.00 0.00 0.00 4.52
1674 5076 3.622163 CAGAAAAAGGCAAAACACATGCA 59.378 39.130 0.00 0.00 45.60 3.96
1696 5098 4.067913 GGGCATGCACGTTTGGGG 62.068 66.667 21.36 0.00 0.00 4.96
1697 5099 3.302344 GGCATGCACGTTTGGGGT 61.302 61.111 21.36 0.00 0.00 4.95
1698 5100 2.733945 GCATGCACGTTTGGGGTT 59.266 55.556 14.21 0.00 0.00 4.11
1699 5101 1.528292 GGCATGCACGTTTGGGGTTA 61.528 55.000 21.36 0.00 0.00 2.85
1700 5102 0.315568 GCATGCACGTTTGGGGTTAA 59.684 50.000 14.21 0.00 0.00 2.01
1701 5103 1.269831 GCATGCACGTTTGGGGTTAAA 60.270 47.619 14.21 0.00 0.00 1.52
1734 5136 9.294030 CTCATGGAGTAATAATTTGAACAAAGC 57.706 33.333 6.18 0.00 33.32 3.51
1810 5227 3.198635 GGGGTCTGTCATGATCTTCAGAA 59.801 47.826 13.60 0.00 38.40 3.02
1914 5338 5.693961 TGATGGTTGGTGCAGATACATAAT 58.306 37.500 0.00 0.00 0.00 1.28
2028 5458 4.040047 CAGTATGGGATGGGCATAGGATA 58.960 47.826 0.00 0.00 0.00 2.59
2034 5464 5.467738 TGGGATGGGCATAGGATATAGTAG 58.532 45.833 0.00 0.00 0.00 2.57
2035 5465 5.042600 TGGGATGGGCATAGGATATAGTAGT 60.043 44.000 0.00 0.00 0.00 2.73
2036 5466 6.163319 TGGGATGGGCATAGGATATAGTAGTA 59.837 42.308 0.00 0.00 0.00 1.82
2037 5467 6.494146 GGGATGGGCATAGGATATAGTAGTAC 59.506 46.154 0.00 0.00 0.00 2.73
2038 5468 7.299134 GGATGGGCATAGGATATAGTAGTACT 58.701 42.308 8.14 8.14 0.00 2.73
2039 5469 8.446394 GGATGGGCATAGGATATAGTAGTACTA 58.554 40.741 12.38 12.38 34.82 1.82
2041 5471 9.815306 ATGGGCATAGGATATAGTAGTACTATG 57.185 37.037 26.48 15.11 41.23 2.23
2042 5472 8.788799 TGGGCATAGGATATAGTAGTACTATGT 58.211 37.037 26.48 21.85 41.23 2.29
2043 5473 9.069082 GGGCATAGGATATAGTAGTACTATGTG 57.931 40.741 26.48 13.98 41.23 3.21
2044 5474 9.848710 GGCATAGGATATAGTAGTACTATGTGA 57.151 37.037 26.48 12.04 41.23 3.58
2054 5484 6.781943 AGTAGTACTATGTGATACTCCCTCC 58.218 44.000 5.75 0.00 33.65 4.30
2055 5485 4.653868 AGTACTATGTGATACTCCCTCCG 58.346 47.826 0.00 0.00 0.00 4.63
2056 5486 3.596940 ACTATGTGATACTCCCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
2057 5487 3.912248 ACTATGTGATACTCCCTCCGTT 58.088 45.455 0.00 0.00 0.00 4.44
2058 5488 3.890147 ACTATGTGATACTCCCTCCGTTC 59.110 47.826 0.00 0.00 0.00 3.95
2059 5489 1.481871 TGTGATACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
2060 5490 1.272816 TGTGATACTCCCTCCGTTCCA 60.273 52.381 0.00 0.00 0.00 3.53
2061 5491 2.040178 GTGATACTCCCTCCGTTCCAT 58.960 52.381 0.00 0.00 0.00 3.41
2062 5492 3.228453 GTGATACTCCCTCCGTTCCATA 58.772 50.000 0.00 0.00 0.00 2.74
2063 5493 3.640029 GTGATACTCCCTCCGTTCCATAA 59.360 47.826 0.00 0.00 0.00 1.90
2064 5494 4.283722 GTGATACTCCCTCCGTTCCATAAT 59.716 45.833 0.00 0.00 0.00 1.28
2065 5495 4.283467 TGATACTCCCTCCGTTCCATAATG 59.717 45.833 0.00 0.00 0.00 1.90
2066 5496 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2067 5497 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2068 5498 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
2069 5499 3.641906 CTCCCTCCGTTCCATAATGTAGT 59.358 47.826 0.00 0.00 0.00 2.73
2070 5500 3.386726 TCCCTCCGTTCCATAATGTAGTG 59.613 47.826 0.00 0.00 0.00 2.74
2071 5501 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
2072 5502 3.131396 CTCCGTTCCATAATGTAGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
2073 5503 2.769663 TCCGTTCCATAATGTAGTGCCT 59.230 45.455 0.00 0.00 0.00 4.75
2074 5504 3.962063 TCCGTTCCATAATGTAGTGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
2075 5505 4.591498 TCCGTTCCATAATGTAGTGCCTAT 59.409 41.667 0.00 0.00 0.00 2.57
2076 5506 5.776208 TCCGTTCCATAATGTAGTGCCTATA 59.224 40.000 0.00 0.00 0.00 1.31
2077 5507 6.268158 TCCGTTCCATAATGTAGTGCCTATAA 59.732 38.462 0.00 0.00 0.00 0.98
2078 5508 6.932400 CCGTTCCATAATGTAGTGCCTATAAA 59.068 38.462 0.00 0.00 0.00 1.40
2079 5509 7.606456 CCGTTCCATAATGTAGTGCCTATAAAT 59.394 37.037 0.00 0.00 0.00 1.40
2080 5510 8.999431 CGTTCCATAATGTAGTGCCTATAAATT 58.001 33.333 0.00 0.00 0.00 1.82
2149 5579 9.710818 AGAAAAGTAGGTACATCTAGAATACCA 57.289 33.333 26.72 15.98 40.81 3.25
2154 5584 8.368668 AGTAGGTACATCTAGAATACCAAATGC 58.631 37.037 26.72 15.90 40.81 3.56
2155 5585 7.136822 AGGTACATCTAGAATACCAAATGCA 57.863 36.000 26.72 0.00 40.81 3.96
2156 5586 6.992715 AGGTACATCTAGAATACCAAATGCAC 59.007 38.462 26.72 9.05 40.81 4.57
2157 5587 6.765989 GGTACATCTAGAATACCAAATGCACA 59.234 38.462 22.87 0.00 38.61 4.57
2158 5588 7.445402 GGTACATCTAGAATACCAAATGCACAT 59.555 37.037 22.87 0.00 38.61 3.21
2159 5589 7.502120 ACATCTAGAATACCAAATGCACATC 57.498 36.000 0.00 0.00 0.00 3.06
2160 5590 7.056006 ACATCTAGAATACCAAATGCACATCA 58.944 34.615 0.00 0.00 0.00 3.07
2161 5591 7.722728 ACATCTAGAATACCAAATGCACATCAT 59.277 33.333 0.00 0.00 36.87 2.45
2162 5592 8.573885 CATCTAGAATACCAAATGCACATCATT 58.426 33.333 0.00 0.00 46.82 2.57
2163 5593 7.933396 TCTAGAATACCAAATGCACATCATTG 58.067 34.615 0.00 0.00 44.23 2.82
2164 5594 5.909477 AGAATACCAAATGCACATCATTGG 58.091 37.500 11.02 11.02 44.23 3.16
2165 5595 5.657745 AGAATACCAAATGCACATCATTGGA 59.342 36.000 17.12 5.42 44.23 3.53
2166 5596 6.325545 AGAATACCAAATGCACATCATTGGAT 59.674 34.615 17.12 6.97 44.23 3.41
2167 5597 7.506599 AGAATACCAAATGCACATCATTGGATA 59.493 33.333 17.12 8.79 44.23 2.59
2168 5598 5.266733 ACCAAATGCACATCATTGGATAC 57.733 39.130 17.12 0.00 44.23 2.24
2221 5651 8.948631 ATGTTTGGTATTGTAGATGTAGACAG 57.051 34.615 0.00 0.00 0.00 3.51
2222 5652 7.903145 TGTTTGGTATTGTAGATGTAGACAGT 58.097 34.615 0.00 0.00 0.00 3.55
2223 5653 8.372459 TGTTTGGTATTGTAGATGTAGACAGTT 58.628 33.333 0.00 0.00 0.00 3.16
2224 5654 9.216117 GTTTGGTATTGTAGATGTAGACAGTTT 57.784 33.333 0.00 0.00 0.00 2.66
2225 5655 9.787435 TTTGGTATTGTAGATGTAGACAGTTTT 57.213 29.630 0.00 0.00 0.00 2.43
2226 5656 9.787435 TTGGTATTGTAGATGTAGACAGTTTTT 57.213 29.630 0.00 0.00 0.00 1.94
2255 5685 3.525268 CTTGGTCAAAGTTGGCAAAGT 57.475 42.857 0.00 0.00 38.66 2.66
2256 5686 3.860641 CTTGGTCAAAGTTGGCAAAGTT 58.139 40.909 0.00 0.00 38.66 2.66
2257 5687 3.971245 TGGTCAAAGTTGGCAAAGTTT 57.029 38.095 0.00 0.42 39.10 2.66
2264 5694 3.801114 AGTTGGCAAAGTTTGACTTCC 57.199 42.857 21.83 12.17 37.47 3.46
2265 5695 3.096092 AGTTGGCAAAGTTTGACTTCCA 58.904 40.909 21.83 14.49 37.47 3.53
2266 5696 3.119137 AGTTGGCAAAGTTTGACTTCCAC 60.119 43.478 21.83 12.78 37.47 4.02
2267 5697 2.451490 TGGCAAAGTTTGACTTCCACA 58.549 42.857 21.83 0.00 37.47 4.17
2268 5698 2.828520 TGGCAAAGTTTGACTTCCACAA 59.171 40.909 21.83 0.00 37.47 3.33
2269 5699 3.259374 TGGCAAAGTTTGACTTCCACAAA 59.741 39.130 21.83 0.00 37.47 2.83
2270 5700 4.249661 GGCAAAGTTTGACTTCCACAAAA 58.750 39.130 19.82 0.00 37.47 2.44
2271 5701 4.693095 GGCAAAGTTTGACTTCCACAAAAA 59.307 37.500 19.82 0.00 37.47 1.94
2272 5702 5.353956 GGCAAAGTTTGACTTCCACAAAAAT 59.646 36.000 19.82 0.00 37.47 1.82
2273 5703 6.456853 GGCAAAGTTTGACTTCCACAAAAATC 60.457 38.462 19.82 0.00 37.47 2.17
2274 5704 6.313658 GCAAAGTTTGACTTCCACAAAAATCT 59.686 34.615 19.82 0.00 37.47 2.40
2275 5705 7.491048 GCAAAGTTTGACTTCCACAAAAATCTA 59.509 33.333 19.82 0.00 37.47 1.98
2276 5706 9.533253 CAAAGTTTGACTTCCACAAAAATCTAT 57.467 29.630 10.19 0.00 37.47 1.98
2279 5709 9.014297 AGTTTGACTTCCACAAAAATCTATAGG 57.986 33.333 0.00 0.00 38.63 2.57
2280 5710 7.391148 TTGACTTCCACAAAAATCTATAGGC 57.609 36.000 0.00 0.00 0.00 3.93
2281 5711 6.480763 TGACTTCCACAAAAATCTATAGGCA 58.519 36.000 0.00 0.00 0.00 4.75
2282 5712 6.374333 TGACTTCCACAAAAATCTATAGGCAC 59.626 38.462 0.00 0.00 0.00 5.01
2283 5713 6.485171 ACTTCCACAAAAATCTATAGGCACT 58.515 36.000 0.00 0.00 46.37 4.40
2297 5727 2.726821 AGGCACTACATTGTGGAATGG 58.273 47.619 7.20 0.00 43.00 3.16
2298 5728 2.308570 AGGCACTACATTGTGGAATGGA 59.691 45.455 7.20 0.00 43.00 3.41
2302 5732 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
2303 5733 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
2326 5757 8.897752 GGAGTATGCAAGACAAGAATAAGAAAT 58.102 33.333 0.00 0.00 0.00 2.17
2328 5759 9.453572 AGTATGCAAGACAAGAATAAGAAATGA 57.546 29.630 0.00 0.00 0.00 2.57
2329 5760 9.713740 GTATGCAAGACAAGAATAAGAAATGAG 57.286 33.333 0.00 0.00 0.00 2.90
2330 5761 7.984422 TGCAAGACAAGAATAAGAAATGAGA 57.016 32.000 0.00 0.00 0.00 3.27
2331 5762 8.394971 TGCAAGACAAGAATAAGAAATGAGAA 57.605 30.769 0.00 0.00 0.00 2.87
2332 5763 8.509690 TGCAAGACAAGAATAAGAAATGAGAAG 58.490 33.333 0.00 0.00 0.00 2.85
2333 5764 7.967303 GCAAGACAAGAATAAGAAATGAGAAGG 59.033 37.037 0.00 0.00 0.00 3.46
2351 5782 1.538687 GGGCTTTGTTGCAGGCTCAT 61.539 55.000 0.00 0.00 37.02 2.90
2355 5786 2.159462 GCTTTGTTGCAGGCTCATACTC 60.159 50.000 0.00 0.00 0.00 2.59
2356 5787 2.113860 TTGTTGCAGGCTCATACTCC 57.886 50.000 0.00 0.00 0.00 3.85
2357 5788 0.253044 TGTTGCAGGCTCATACTCCC 59.747 55.000 0.00 0.00 0.00 4.30
2359 5790 0.833287 TTGCAGGCTCATACTCCCTC 59.167 55.000 0.00 0.00 0.00 4.30
2360 5791 1.365633 GCAGGCTCATACTCCCTCG 59.634 63.158 0.00 0.00 0.00 4.63
2361 5792 2.045280 CAGGCTCATACTCCCTCGG 58.955 63.158 0.00 0.00 0.00 4.63
2362 5793 0.757188 CAGGCTCATACTCCCTCGGT 60.757 60.000 0.00 0.00 0.00 4.69
2363 5794 0.468400 AGGCTCATACTCCCTCGGTC 60.468 60.000 0.00 0.00 0.00 4.79
2364 5795 1.465200 GGCTCATACTCCCTCGGTCC 61.465 65.000 0.00 0.00 0.00 4.46
2366 5797 0.106167 CTCATACTCCCTCGGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
2367 5798 0.337082 TCATACTCCCTCGGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
2368 5799 1.200519 CATACTCCCTCGGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
2369 5800 1.557832 CATACTCCCTCGGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
2370 5801 1.272807 TACTCCCTCGGTCCCAAAAG 58.727 55.000 0.00 0.00 0.00 2.27
2371 5802 0.473117 ACTCCCTCGGTCCCAAAAGA 60.473 55.000 0.00 0.00 0.00 2.52
2372 5803 0.690762 CTCCCTCGGTCCCAAAAGAA 59.309 55.000 0.00 0.00 0.00 2.52
2373 5804 0.690762 TCCCTCGGTCCCAAAAGAAG 59.309 55.000 0.00 0.00 0.00 2.85
2375 5806 1.523758 CCTCGGTCCCAAAAGAAGTG 58.476 55.000 0.00 0.00 0.00 3.16
2376 5807 1.202770 CCTCGGTCCCAAAAGAAGTGT 60.203 52.381 0.00 0.00 0.00 3.55
2377 5808 2.143925 CTCGGTCCCAAAAGAAGTGTC 58.856 52.381 0.00 0.00 0.00 3.67
2378 5809 1.766496 TCGGTCCCAAAAGAAGTGTCT 59.234 47.619 0.00 0.00 34.72 3.41
2379 5810 2.143925 CGGTCCCAAAAGAAGTGTCTC 58.856 52.381 0.00 0.00 30.70 3.36
2380 5811 2.484770 CGGTCCCAAAAGAAGTGTCTCA 60.485 50.000 0.00 0.00 30.70 3.27
2382 5813 3.565902 GGTCCCAAAAGAAGTGTCTCAAG 59.434 47.826 0.00 0.00 30.70 3.02
2383 5814 3.003793 GTCCCAAAAGAAGTGTCTCAAGC 59.996 47.826 0.00 0.00 30.70 4.01
2384 5815 3.117888 TCCCAAAAGAAGTGTCTCAAGCT 60.118 43.478 0.00 0.00 30.70 3.74
2385 5816 3.633986 CCCAAAAGAAGTGTCTCAAGCTT 59.366 43.478 0.00 0.00 30.70 3.74
2386 5817 4.821805 CCCAAAAGAAGTGTCTCAAGCTTA 59.178 41.667 0.00 0.00 30.70 3.09
2387 5818 5.049129 CCCAAAAGAAGTGTCTCAAGCTTAG 60.049 44.000 0.00 0.00 30.70 2.18
2389 5820 6.425504 CAAAAGAAGTGTCTCAAGCTTAGTG 58.574 40.000 0.00 0.00 30.70 2.74
2391 5822 3.070159 AGAAGTGTCTCAAGCTTAGTGCA 59.930 43.478 0.00 0.00 45.94 4.57
2392 5823 3.475566 AGTGTCTCAAGCTTAGTGCAA 57.524 42.857 0.00 0.00 45.94 4.08
2393 5824 3.134458 AGTGTCTCAAGCTTAGTGCAAC 58.866 45.455 0.00 0.00 45.94 4.17
2394 5825 9.942131 AAGAAGTGTCTCAAGCTTAGTGCAACT 62.942 40.741 0.00 0.00 42.16 3.16
2436 5867 8.934023 ATAAAGTTGAGACACTTAATTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
2437 5868 6.635030 AAGTTGAGACACTTAATTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2438 5869 4.755123 AGTTGAGACACTTAATTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2439 5870 3.670625 TGAGACACTTAATTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2440 5871 3.325425 TGAGACACTTAATTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2441 5872 3.933332 GAGACACTTAATTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2442 5873 3.007635 GACACTTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2443 5874 2.290705 ACACTTAATTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2444 5875 2.026636 CACTTAATTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2445 5876 2.238898 ACTTAATTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2446 5877 1.961133 TAATTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2447 5878 1.961133 AATTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2448 5879 1.201424 ATTTGGGACGGAGGGAGTAC 58.799 55.000 0.00 0.00 0.00 2.73
2449 5880 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
2457 5888 4.405036 GGACGGAGGGAGTACTATTTTCTT 59.595 45.833 0.00 0.00 0.00 2.52
2468 5899 9.827411 GGAGTACTATTTTCTTAGCTTTGTTTG 57.173 33.333 0.00 0.00 0.00 2.93
2499 5930 1.484038 AGTTTCTTGCAGCCCAACAA 58.516 45.000 0.00 0.00 0.00 2.83
2508 5939 1.769733 CAGCCCAACAAATGTGAACG 58.230 50.000 0.00 0.00 0.00 3.95
2537 5968 2.159599 GCCTTCTCGAGTTGCTGATTTG 60.160 50.000 13.13 0.00 0.00 2.32
2579 6010 6.757237 TGCTGGATTCAGAATAGAAGATCTC 58.243 40.000 4.75 0.00 43.49 2.75
2618 6049 4.800993 AGTATGTCGCTCTTTTCTCAATCG 59.199 41.667 0.00 0.00 0.00 3.34
2621 6052 4.993905 TGTCGCTCTTTTCTCAATCGATA 58.006 39.130 0.00 0.00 0.00 2.92
2638 6069 2.971915 CGATAGCGCTAGAAACTTACCG 59.028 50.000 23.37 10.09 0.00 4.02
2639 6070 2.857592 TAGCGCTAGAAACTTACCGG 57.142 50.000 14.45 0.00 0.00 5.28
2662 6094 6.513393 CGGCTCCACTGATTTTAATTATGGAC 60.513 42.308 0.00 0.00 31.58 4.02
2692 6126 7.294676 ACACTTTTCTGCTTGTGAAAAATTC 57.705 32.000 0.00 0.00 41.13 2.17
3014 6451 0.747283 CAGCAGTTGATCCTCAGGCC 60.747 60.000 0.00 0.00 0.00 5.19
3152 6589 6.405842 CGGATCCGGATATAGACATTGATGAA 60.406 42.308 26.95 0.00 35.56 2.57
3252 6689 7.496529 TGAACTTTTCATACTCTCAGGTTTG 57.503 36.000 0.00 0.00 34.08 2.93
3254 6691 6.187727 ACTTTTCATACTCTCAGGTTTGGA 57.812 37.500 0.00 0.00 0.00 3.53
3255 6692 6.234177 ACTTTTCATACTCTCAGGTTTGGAG 58.766 40.000 0.00 0.00 0.00 3.86
3256 6693 6.043243 ACTTTTCATACTCTCAGGTTTGGAGA 59.957 38.462 0.00 0.00 39.01 3.71
3257 6694 6.627087 TTTCATACTCTCAGGTTTGGAGAT 57.373 37.500 0.00 0.00 40.40 2.75
3258 6695 5.860941 TCATACTCTCAGGTTTGGAGATC 57.139 43.478 0.00 0.00 40.40 2.75
3259 6696 4.339530 TCATACTCTCAGGTTTGGAGATCG 59.660 45.833 0.00 0.00 40.40 3.69
3313 6911 6.465948 TGCAATTAAAGATTGGACATTTGCT 58.534 32.000 0.00 0.00 38.15 3.91
3324 6922 3.163594 GGACATTTGCTTCATTTCGACG 58.836 45.455 0.00 0.00 0.00 5.12
3330 6928 2.409012 TGCTTCATTTCGACGTGCTTA 58.591 42.857 0.00 0.00 0.00 3.09
3424 7030 4.433615 AGTAGCACCATTATCTTCACACG 58.566 43.478 0.00 0.00 0.00 4.49
3427 7033 4.433615 AGCACCATTATCTTCACACGTAG 58.566 43.478 0.00 0.00 0.00 3.51
3450 7056 4.750598 GCAGCCTAGTTGCCTATAACTAAC 59.249 45.833 5.41 0.00 41.25 2.34
3496 7102 3.980646 TGCTGAAAAATACTGTTGCGT 57.019 38.095 0.00 0.00 0.00 5.24
3615 7230 4.980702 CAGCTTGCTGCCCCCACA 62.981 66.667 9.78 0.00 44.23 4.17
3630 7245 2.559440 CCCACAGCTTCTGATTCTAGC 58.441 52.381 0.29 0.00 35.18 3.42
3700 7315 1.814394 TCTGATGCTTTGGTCACATGC 59.186 47.619 0.00 0.00 0.00 4.06
3720 7335 8.407832 CACATGCTGATCCATTGTTTAAAGATA 58.592 33.333 0.00 0.00 0.00 1.98
3721 7336 9.139734 ACATGCTGATCCATTGTTTAAAGATAT 57.860 29.630 0.00 0.00 0.00 1.63
3790 7405 1.401539 GCTGCTAGGAAAAGCCGTTTG 60.402 52.381 0.00 0.00 42.05 2.93
3888 7503 4.982916 GTGGTAGCATGGTAGATCGTTTAG 59.017 45.833 4.51 0.00 0.00 1.85
3915 7530 7.379059 AGTGTATGAGGTATCATTTCATCCA 57.621 36.000 0.00 0.00 43.92 3.41
4056 7731 4.322650 GCCTATTTCACCATTTGGCTTTGA 60.323 41.667 0.00 0.00 39.32 2.69
4166 7841 7.615403 TATGCTCTACATTTCCATACAGGATC 58.385 38.462 0.00 0.00 42.58 3.36
4196 7879 5.784578 AGTTTCTTGGGTTAAACATCCAC 57.215 39.130 0.00 0.00 37.92 4.02
4271 7954 1.098869 GGATCAGTCTCAGTCAGCGA 58.901 55.000 0.00 0.00 0.00 4.93
4291 7974 6.260936 CAGCGAGTGGAAATGGTAATATTCTT 59.739 38.462 0.00 0.00 0.00 2.52
4453 8250 2.768527 TGATTTGTTGGCCTTTGGTGAA 59.231 40.909 3.32 0.00 0.00 3.18
4564 8407 2.806945 TATCCTTGGCCTTTGGTGAG 57.193 50.000 3.32 0.00 0.00 3.51
4654 8497 2.035066 GGCATTTGACATGGAGTATGCC 59.965 50.000 20.79 20.79 46.77 4.40
4912 8755 7.054751 AGCTCCTTAAGGTACCAATTTGATAC 58.945 38.462 21.04 0.00 32.74 2.24
4958 8801 1.304962 CCTTAACCAGGGCCCAACC 60.305 63.158 27.56 0.00 39.39 3.77
4967 8810 1.201429 AGGGCCCAACCTAGTGAGTG 61.201 60.000 27.56 0.00 39.65 3.51
4978 8821 5.632034 ACCTAGTGAGTGGTTTTCTTTCT 57.368 39.130 0.00 0.00 31.62 2.52
5009 8852 7.119407 CCCTTATGAGCATGTCAAGATGATTAG 59.881 40.741 0.00 0.00 39.19 1.73
5185 9029 1.600058 TTCTCAAGGGATGGAGGCAT 58.400 50.000 0.00 0.00 0.00 4.40
5196 9040 3.609853 GATGGAGGCATTACAACAGTCA 58.390 45.455 0.00 0.00 0.00 3.41
5211 9055 2.438021 ACAGTCACTTGCAGAAACCCTA 59.562 45.455 0.00 0.00 0.00 3.53
5232 9076 4.843331 TCTGGATCCCTGGGCCCC 62.843 72.222 22.27 11.89 0.00 5.80
5416 9263 5.529060 GCAGACTATTTGGGGAGTTAGAATG 59.471 44.000 0.00 0.00 0.00 2.67
5461 9312 9.558396 CTTATTTTGGAGAATAGAATCTGAGCT 57.442 33.333 0.00 0.00 0.00 4.09
5465 9316 5.083122 TGGAGAATAGAATCTGAGCTAGGG 58.917 45.833 0.00 0.00 0.00 3.53
5466 9317 5.083821 GGAGAATAGAATCTGAGCTAGGGT 58.916 45.833 0.00 0.00 0.00 4.34
5499 9352 1.772182 CGTGTTCTCACCACTCAGAC 58.228 55.000 0.00 0.00 41.09 3.51
5523 9376 2.237392 AGTTCTTAGCTCGAATTGCCCT 59.763 45.455 0.00 0.00 0.00 5.19
5588 9441 5.050159 ACGCTCCATTTCTTTTGCAATTTTC 60.050 36.000 0.00 0.00 0.00 2.29
5591 9444 7.095691 CGCTCCATTTCTTTTGCAATTTTCTTA 60.096 33.333 0.00 0.00 0.00 2.10
5592 9445 8.558700 GCTCCATTTCTTTTGCAATTTTCTTAA 58.441 29.630 0.00 0.00 0.00 1.85
5669 9561 4.671377 TGCACATTTTCACTTGAACTGAC 58.329 39.130 7.42 2.02 33.13 3.51
5670 9562 4.157472 TGCACATTTTCACTTGAACTGACA 59.843 37.500 7.42 3.87 33.13 3.58
5677 9569 6.698008 TTTCACTTGAACTGACACATCATT 57.302 33.333 0.00 0.00 33.22 2.57
5706 9598 3.149981 GGGGGATAGCAAGAAAGCATAC 58.850 50.000 0.00 0.00 36.85 2.39
5711 9603 6.036470 GGGATAGCAAGAAAGCATACAAAAC 58.964 40.000 0.00 0.00 36.85 2.43
5712 9604 6.350110 GGGATAGCAAGAAAGCATACAAAACA 60.350 38.462 0.00 0.00 36.85 2.83
5748 9641 5.469760 TGTATTCAACTGGTGATGAACTGTG 59.530 40.000 0.00 0.00 37.70 3.66
5786 9679 0.034616 AGGCTGATAATCTGCGGCTC 59.965 55.000 0.00 0.00 41.49 4.70
5849 9742 4.144681 GCACGAGCTCTGCTTGCG 62.145 66.667 22.90 8.65 43.36 4.85
6030 9927 6.176183 ACTCCCTAGATTCTTCACAATGTTG 58.824 40.000 0.00 0.00 0.00 3.33
6046 9943 5.218885 CAATGTTGTTGTATTGGCGAGAAA 58.781 37.500 0.00 0.00 32.13 2.52
6236 10133 5.491323 TGTGGACTTGTGGTGTATAATCA 57.509 39.130 0.00 0.00 0.00 2.57
6274 10173 2.840038 AGCCTGATGAGGTGACATGTTA 59.160 45.455 0.00 0.00 42.15 2.41
6275 10174 3.457380 AGCCTGATGAGGTGACATGTTAT 59.543 43.478 0.00 0.00 42.15 1.89
6316 10215 3.318017 ACATCGGTTCTGTTCTTTCGAG 58.682 45.455 0.00 0.00 0.00 4.04
6344 10243 5.829924 AGGCCAAGTTACTTAATGGATCATG 59.170 40.000 5.01 0.00 34.82 3.07
6345 10244 5.594317 GGCCAAGTTACTTAATGGATCATGT 59.406 40.000 5.81 0.00 34.82 3.21
6346 10245 6.096846 GGCCAAGTTACTTAATGGATCATGTT 59.903 38.462 5.81 0.00 34.82 2.71
6438 10366 0.178970 GCCTGGGCTTCATGGATCAT 60.179 55.000 4.12 0.00 38.26 2.45
6454 10382 7.389607 TCATGGATCATGCTTCATACACTAATG 59.610 37.037 3.23 0.00 41.18 1.90
6509 10445 3.011257 TCCTCATTCCCTTTTTAGTGGGG 59.989 47.826 0.00 0.00 43.51 4.96
6551 10487 7.595819 TGGTAGAAAATTTGACCATTCAAGT 57.404 32.000 13.28 0.00 42.79 3.16
6568 10504 5.276461 TCAAGTTATCAGCGTGATATGGT 57.724 39.130 8.03 0.00 38.94 3.55
6615 10565 4.529897 TCATGATATGGCAAAGCTTGAGT 58.470 39.130 0.00 0.00 0.00 3.41
6657 10607 9.426837 CCAATCAGAAATGTGATTTGTATGTTT 57.573 29.630 3.28 0.00 43.29 2.83
6677 10638 8.761575 ATGTTTGCAAGAAAATACTTGTATGG 57.238 30.769 0.00 0.00 45.98 2.74
6814 10776 6.667848 TGTTCTTGAACCAGATAGGATAGTGA 59.332 38.462 10.51 0.00 41.22 3.41
6817 10779 8.642935 TCTTGAACCAGATAGGATAGTGATAG 57.357 38.462 0.00 0.00 41.22 2.08
6871 10833 1.505353 CAGTTAAGCAGCAGCAGCC 59.495 57.895 6.10 0.00 45.49 4.85
6872 10834 0.959372 CAGTTAAGCAGCAGCAGCCT 60.959 55.000 6.10 0.00 45.49 4.58
6875 10837 0.957395 TTAAGCAGCAGCAGCCTCAC 60.957 55.000 6.10 0.00 45.49 3.51
6878 10840 3.054503 CAGCAGCAGCCTCACCAC 61.055 66.667 0.00 0.00 43.56 4.16
6879 10841 4.694233 AGCAGCAGCCTCACCACG 62.694 66.667 0.00 0.00 43.56 4.94
6880 10842 4.996434 GCAGCAGCCTCACCACGT 62.996 66.667 0.00 0.00 33.58 4.49
6882 10844 2.919856 AGCAGCCTCACCACGTCT 60.920 61.111 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.938280 TTTGTGCAGTATGTTACTAGAATAACT 57.062 29.630 0.00 0.00 39.31 2.24
5 6 9.278978 TCAATTTTGTGCAGTATGTTACTAGAA 57.721 29.630 0.00 0.00 39.31 2.10
17 18 6.985117 ACTGATAACATCAATTTTGTGCAGT 58.015 32.000 11.76 11.76 39.11 4.40
18 19 7.878477 AACTGATAACATCAATTTTGTGCAG 57.122 32.000 0.00 0.00 39.11 4.41
19 20 7.924947 TGAAACTGATAACATCAATTTTGTGCA 59.075 29.630 0.00 0.00 38.65 4.57
51 52 7.838771 AATCATAACCGTAAACAAGTACCTC 57.161 36.000 0.00 0.00 0.00 3.85
66 71 8.028938 ACAAGCTGTTGATACAAAATCATAACC 58.971 33.333 0.00 0.00 37.10 2.85
74 79 6.095580 TGTTACCACAAGCTGTTGATACAAAA 59.904 34.615 0.00 0.00 37.10 2.44
94 99 8.865590 AAATACCAAGTGTGTCAATTTGTTAC 57.134 30.769 0.00 0.00 0.00 2.50
102 107 9.126151 TCTATTTCAAAATACCAAGTGTGTCAA 57.874 29.630 0.00 0.00 0.00 3.18
104 109 9.612620 CTTCTATTTCAAAATACCAAGTGTGTC 57.387 33.333 0.00 0.00 0.00 3.67
106 111 8.792633 TCCTTCTATTTCAAAATACCAAGTGTG 58.207 33.333 0.00 0.00 0.00 3.82
124 129 8.181904 TCAAAAGTTTGAAATGCTCCTTCTAT 57.818 30.769 4.00 0.00 43.62 1.98
125 130 7.581213 TCAAAAGTTTGAAATGCTCCTTCTA 57.419 32.000 4.00 0.00 43.62 2.10
126 131 6.469782 TCAAAAGTTTGAAATGCTCCTTCT 57.530 33.333 4.00 0.00 43.62 2.85
139 144 6.986231 AGAAGGCAGGTTTAATCAAAAGTTTG 59.014 34.615 0.00 0.00 39.48 2.93
140 145 7.124573 AGAAGGCAGGTTTAATCAAAAGTTT 57.875 32.000 0.00 0.00 0.00 2.66
141 146 6.515035 CGAGAAGGCAGGTTTAATCAAAAGTT 60.515 38.462 0.00 0.00 0.00 2.66
142 147 5.048713 CGAGAAGGCAGGTTTAATCAAAAGT 60.049 40.000 0.00 0.00 0.00 2.66
143 148 5.393962 CGAGAAGGCAGGTTTAATCAAAAG 58.606 41.667 0.00 0.00 0.00 2.27
144 149 4.320935 GCGAGAAGGCAGGTTTAATCAAAA 60.321 41.667 0.00 0.00 0.00 2.44
145 150 3.190535 GCGAGAAGGCAGGTTTAATCAAA 59.809 43.478 0.00 0.00 0.00 2.69
146 151 2.747446 GCGAGAAGGCAGGTTTAATCAA 59.253 45.455 0.00 0.00 0.00 2.57
147 152 2.290008 TGCGAGAAGGCAGGTTTAATCA 60.290 45.455 0.00 0.00 38.17 2.57
148 153 2.356135 TGCGAGAAGGCAGGTTTAATC 58.644 47.619 0.00 0.00 38.17 1.75
149 154 2.489938 TGCGAGAAGGCAGGTTTAAT 57.510 45.000 0.00 0.00 38.17 1.40
150 155 2.264005 TTGCGAGAAGGCAGGTTTAA 57.736 45.000 0.00 0.00 44.94 1.52
151 156 2.264005 TTTGCGAGAAGGCAGGTTTA 57.736 45.000 0.00 0.00 44.94 2.01
152 157 1.398692 TTTTGCGAGAAGGCAGGTTT 58.601 45.000 0.00 0.00 44.94 3.27
153 158 1.398692 TTTTTGCGAGAAGGCAGGTT 58.601 45.000 0.00 0.00 44.94 3.50
154 159 3.109847 TTTTTGCGAGAAGGCAGGT 57.890 47.368 0.00 0.00 44.94 4.00
172 177 9.920133 GAAATGCTCCTTCTATTTCTTTTCTTT 57.080 29.630 0.00 0.00 37.66 2.52
173 178 9.082313 TGAAATGCTCCTTCTATTTCTTTTCTT 57.918 29.630 0.00 0.00 40.01 2.52
174 179 8.641498 TGAAATGCTCCTTCTATTTCTTTTCT 57.359 30.769 0.00 0.00 40.01 2.52
175 180 9.696917 TTTGAAATGCTCCTTCTATTTCTTTTC 57.303 29.630 0.00 0.00 40.01 2.29
176 181 9.481340 GTTTGAAATGCTCCTTCTATTTCTTTT 57.519 29.630 0.00 0.00 40.01 2.27
177 182 8.864087 AGTTTGAAATGCTCCTTCTATTTCTTT 58.136 29.630 0.00 0.00 40.01 2.52
178 183 8.414629 AGTTTGAAATGCTCCTTCTATTTCTT 57.585 30.769 0.00 0.00 40.01 2.52
179 184 8.414629 AAGTTTGAAATGCTCCTTCTATTTCT 57.585 30.769 0.00 0.00 40.01 2.52
246 312 4.816925 GGGGCTGACATACTATTGAAGAAC 59.183 45.833 0.00 0.00 0.00 3.01
269 337 3.745975 TCTGTTTTATGTGCAAGTCCTCG 59.254 43.478 0.00 0.00 0.00 4.63
388 3761 7.432148 TTCAGGGCAACTATTTGAGATACTA 57.568 36.000 0.00 0.00 34.24 1.82
421 3794 9.974980 AGAATTTCCAAATGTACGTAAATTTGT 57.025 25.926 33.66 22.59 40.57 2.83
431 3805 6.531594 GCCTGCTTAAGAATTTCCAAATGTAC 59.468 38.462 6.67 0.00 0.00 2.90
462 3836 1.208052 GGCAGTCAAGGCTCATCACTA 59.792 52.381 0.00 0.00 0.00 2.74
657 4041 2.343758 GGCGACAGTGGCAGAAGA 59.656 61.111 10.02 0.00 0.00 2.87
700 4084 1.744114 GCGGAAATGAGAGGAGGAACC 60.744 57.143 0.00 0.00 39.35 3.62
842 4230 3.008049 GGCAGAGGAAGAAGAACAAGGTA 59.992 47.826 0.00 0.00 0.00 3.08
844 4232 2.431454 GGCAGAGGAAGAAGAACAAGG 58.569 52.381 0.00 0.00 0.00 3.61
873 4262 3.289128 TGTCACCAACAGAAGCGAG 57.711 52.632 0.00 0.00 32.81 5.03
909 4298 1.286257 AGGAAGAAGCAAGGGGATTCC 59.714 52.381 0.00 0.00 42.90 3.01
913 4302 1.630878 GAAGAGGAAGAAGCAAGGGGA 59.369 52.381 0.00 0.00 0.00 4.81
937 4326 1.675641 GCATCACCCACCTCACACC 60.676 63.158 0.00 0.00 0.00 4.16
939 4328 2.347114 CGCATCACCCACCTCACA 59.653 61.111 0.00 0.00 0.00 3.58
940 4329 3.127533 GCGCATCACCCACCTCAC 61.128 66.667 0.30 0.00 0.00 3.51
943 4332 4.415150 CTGGCGCATCACCCACCT 62.415 66.667 10.83 0.00 0.00 4.00
946 4335 3.626996 CTTCCTGGCGCATCACCCA 62.627 63.158 10.83 0.00 0.00 4.51
1077 4476 2.927856 TGCTGAGGAGCCCCGAAA 60.928 61.111 0.00 0.00 45.57 3.46
1140 4539 1.814429 TGGGACAAGGAAGAACTGGA 58.186 50.000 0.00 0.00 31.92 3.86
1227 4626 1.883084 CAGGGCTCGTAATCGCACC 60.883 63.158 0.00 0.00 36.96 5.01
1294 4693 1.838073 TTCCCGTCCTGGAAAGGAGC 61.838 60.000 18.01 0.00 41.40 4.70
1425 4826 7.440856 CCCTGTTACTACTACTACTAGTGCTAC 59.559 44.444 5.39 0.00 34.79 3.58
1426 4827 7.345653 TCCCTGTTACTACTACTACTAGTGCTA 59.654 40.741 5.39 0.00 34.79 3.49
1427 4828 6.157645 TCCCTGTTACTACTACTACTAGTGCT 59.842 42.308 5.39 0.00 34.79 4.40
1474 4875 1.820481 CTCCCTCCCGAGACGAGAC 60.820 68.421 0.00 0.00 30.78 3.36
1475 4876 1.559965 TTCTCCCTCCCGAGACGAGA 61.560 60.000 0.00 7.15 38.62 4.04
1476 4877 1.077644 TTCTCCCTCCCGAGACGAG 60.078 63.158 0.00 0.00 38.62 4.18
1477 4878 1.077644 CTTCTCCCTCCCGAGACGA 60.078 63.158 0.00 0.00 38.62 4.20
1478 4879 0.680280 TTCTTCTCCCTCCCGAGACG 60.680 60.000 0.00 0.00 38.62 4.18
1635 5037 2.656002 TCTGAAGATCTGGACCTACCG 58.344 52.381 0.00 0.00 42.61 4.02
1664 5066 1.047596 TGCCCAACCTGCATGTGTTT 61.048 50.000 0.00 0.00 32.85 2.83
1674 5076 1.832167 AAACGTGCATGCCCAACCT 60.832 52.632 16.68 0.00 0.00 3.50
1833 5257 1.346395 TCTGGTCCACAAACGCATACT 59.654 47.619 0.00 0.00 0.00 2.12
1834 5258 1.803334 TCTGGTCCACAAACGCATAC 58.197 50.000 0.00 0.00 0.00 2.39
1835 5259 2.147958 GTTCTGGTCCACAAACGCATA 58.852 47.619 0.00 0.00 0.00 3.14
1914 5338 0.447406 CAATTGCATCGGTCGCAGAA 59.553 50.000 0.00 0.00 41.18 3.02
1985 5415 3.700539 TGTCCATTCAGTAATTGCCATGG 59.299 43.478 7.63 7.63 38.10 3.66
2028 5458 8.550585 GGAGGGAGTATCACATAGTACTACTAT 58.449 40.741 4.31 3.21 45.06 2.12
2034 5464 4.396522 ACGGAGGGAGTATCACATAGTAC 58.603 47.826 0.00 0.00 45.06 2.73
2035 5465 4.719026 ACGGAGGGAGTATCACATAGTA 57.281 45.455 0.00 0.00 45.06 1.82
2036 5466 3.596940 ACGGAGGGAGTATCACATAGT 57.403 47.619 0.00 0.00 45.06 2.12
2037 5467 3.256136 GGAACGGAGGGAGTATCACATAG 59.744 52.174 0.00 0.00 45.06 2.23
2038 5468 3.228453 GGAACGGAGGGAGTATCACATA 58.772 50.000 0.00 0.00 45.06 2.29
2039 5469 2.040178 GGAACGGAGGGAGTATCACAT 58.960 52.381 0.00 0.00 45.06 3.21
2040 5470 1.272816 TGGAACGGAGGGAGTATCACA 60.273 52.381 0.00 0.00 45.06 3.58
2041 5471 1.481871 TGGAACGGAGGGAGTATCAC 58.518 55.000 0.00 0.00 40.51 3.06
2042 5472 2.471815 ATGGAACGGAGGGAGTATCA 57.528 50.000 0.00 0.00 36.25 2.15
2043 5473 4.283722 ACATTATGGAACGGAGGGAGTATC 59.716 45.833 0.00 0.00 0.00 2.24
2044 5474 4.232091 ACATTATGGAACGGAGGGAGTAT 58.768 43.478 0.00 0.00 0.00 2.12
2045 5475 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
2046 5476 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2047 5477 3.641906 ACTACATTATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
2048 5478 3.386726 CACTACATTATGGAACGGAGGGA 59.613 47.826 0.00 0.00 0.00 4.20
2049 5479 3.728845 CACTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
2050 5480 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
2051 5481 3.131396 GGCACTACATTATGGAACGGAG 58.869 50.000 0.00 0.00 0.00 4.63
2052 5482 2.769663 AGGCACTACATTATGGAACGGA 59.230 45.455 0.00 0.00 36.02 4.69
2053 5483 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44
2123 5553 9.710818 TGGTATTCTAGATGTACCTACTTTTCT 57.289 33.333 24.31 0.00 38.89 2.52
2128 5558 8.368668 GCATTTGGTATTCTAGATGTACCTACT 58.631 37.037 24.31 14.71 38.89 2.57
2129 5559 8.148351 TGCATTTGGTATTCTAGATGTACCTAC 58.852 37.037 24.31 14.77 38.89 3.18
2130 5560 8.148351 GTGCATTTGGTATTCTAGATGTACCTA 58.852 37.037 24.31 18.45 38.89 3.08
2131 5561 6.992715 GTGCATTTGGTATTCTAGATGTACCT 59.007 38.462 24.31 10.63 38.89 3.08
2132 5562 6.765989 TGTGCATTTGGTATTCTAGATGTACC 59.234 38.462 20.29 20.29 38.65 3.34
2133 5563 7.786178 TGTGCATTTGGTATTCTAGATGTAC 57.214 36.000 0.00 0.27 32.91 2.90
2134 5564 8.210265 TGATGTGCATTTGGTATTCTAGATGTA 58.790 33.333 0.00 0.00 0.00 2.29
2135 5565 7.056006 TGATGTGCATTTGGTATTCTAGATGT 58.944 34.615 0.00 0.00 0.00 3.06
2136 5566 7.500720 TGATGTGCATTTGGTATTCTAGATG 57.499 36.000 0.00 0.00 0.00 2.90
2137 5567 8.573885 CAATGATGTGCATTTGGTATTCTAGAT 58.426 33.333 0.00 0.00 44.68 1.98
2138 5568 7.013559 CCAATGATGTGCATTTGGTATTCTAGA 59.986 37.037 0.00 0.00 44.68 2.43
2139 5569 7.013559 TCCAATGATGTGCATTTGGTATTCTAG 59.986 37.037 12.63 0.00 44.68 2.43
2140 5570 6.832900 TCCAATGATGTGCATTTGGTATTCTA 59.167 34.615 12.63 0.00 44.68 2.10
2141 5571 5.657745 TCCAATGATGTGCATTTGGTATTCT 59.342 36.000 12.63 0.00 44.68 2.40
2142 5572 5.904941 TCCAATGATGTGCATTTGGTATTC 58.095 37.500 12.63 0.00 44.68 1.75
2143 5573 5.936187 TCCAATGATGTGCATTTGGTATT 57.064 34.783 12.63 0.00 44.68 1.89
2144 5574 6.550481 TGTATCCAATGATGTGCATTTGGTAT 59.450 34.615 12.63 9.03 44.68 2.73
2145 5575 5.890419 TGTATCCAATGATGTGCATTTGGTA 59.110 36.000 12.63 5.40 44.68 3.25
2146 5576 4.710865 TGTATCCAATGATGTGCATTTGGT 59.289 37.500 12.63 6.06 44.68 3.67
2147 5577 5.265350 TGTATCCAATGATGTGCATTTGG 57.735 39.130 8.57 8.57 44.68 3.28
2148 5578 6.759356 ACAATGTATCCAATGATGTGCATTTG 59.241 34.615 0.00 0.00 44.68 2.32
2149 5579 6.759356 CACAATGTATCCAATGATGTGCATTT 59.241 34.615 0.00 0.00 44.68 2.32
2151 5581 5.595133 TCACAATGTATCCAATGATGTGCAT 59.405 36.000 0.00 0.00 39.43 3.96
2152 5582 4.948621 TCACAATGTATCCAATGATGTGCA 59.051 37.500 0.00 0.00 32.18 4.57
2153 5583 5.066893 ACTCACAATGTATCCAATGATGTGC 59.933 40.000 0.00 0.00 32.18 4.57
2154 5584 6.688637 ACTCACAATGTATCCAATGATGTG 57.311 37.500 0.00 0.00 32.18 3.21
2155 5585 8.985315 ATAACTCACAATGTATCCAATGATGT 57.015 30.769 0.00 0.00 32.18 3.06
2196 5626 8.540388 ACTGTCTACATCTACAATACCAAACAT 58.460 33.333 0.00 0.00 0.00 2.71
2197 5627 7.903145 ACTGTCTACATCTACAATACCAAACA 58.097 34.615 0.00 0.00 0.00 2.83
2198 5628 8.773404 AACTGTCTACATCTACAATACCAAAC 57.227 34.615 0.00 0.00 0.00 2.93
2199 5629 9.787435 AAAACTGTCTACATCTACAATACCAAA 57.213 29.630 0.00 0.00 0.00 3.28
2200 5630 9.787435 AAAAACTGTCTACATCTACAATACCAA 57.213 29.630 0.00 0.00 0.00 3.67
2223 5653 8.410141 CCAACTTTGACCAAGTGTATAGAAAAA 58.590 33.333 0.00 0.00 45.77 1.94
2224 5654 7.469456 GCCAACTTTGACCAAGTGTATAGAAAA 60.469 37.037 0.00 0.00 45.77 2.29
2225 5655 6.016610 GCCAACTTTGACCAAGTGTATAGAAA 60.017 38.462 0.00 0.00 45.77 2.52
2226 5656 5.472137 GCCAACTTTGACCAAGTGTATAGAA 59.528 40.000 0.00 0.00 45.77 2.10
2227 5657 5.001232 GCCAACTTTGACCAAGTGTATAGA 58.999 41.667 0.00 0.00 45.77 1.98
2228 5658 4.759693 TGCCAACTTTGACCAAGTGTATAG 59.240 41.667 0.00 0.00 45.77 1.31
2229 5659 4.720046 TGCCAACTTTGACCAAGTGTATA 58.280 39.130 0.00 0.00 45.77 1.47
2230 5660 3.561143 TGCCAACTTTGACCAAGTGTAT 58.439 40.909 0.00 0.00 45.77 2.29
2231 5661 3.006112 TGCCAACTTTGACCAAGTGTA 57.994 42.857 0.00 0.00 45.77 2.90
2232 5662 1.846007 TGCCAACTTTGACCAAGTGT 58.154 45.000 0.00 0.00 45.77 3.55
2233 5663 2.957491 TTGCCAACTTTGACCAAGTG 57.043 45.000 0.00 0.00 45.77 3.16
2235 5665 3.525268 ACTTTGCCAACTTTGACCAAG 57.475 42.857 0.00 0.00 38.64 3.61
2236 5666 3.971245 AACTTTGCCAACTTTGACCAA 57.029 38.095 0.00 0.00 0.00 3.67
2237 5667 3.259374 TCAAACTTTGCCAACTTTGACCA 59.741 39.130 5.68 0.00 29.66 4.02
2238 5668 3.616821 GTCAAACTTTGCCAACTTTGACC 59.383 43.478 19.93 9.30 43.35 4.02
2239 5669 4.494484 AGTCAAACTTTGCCAACTTTGAC 58.506 39.130 21.64 21.64 46.84 3.18
2240 5670 4.799564 AGTCAAACTTTGCCAACTTTGA 57.200 36.364 5.68 5.68 31.68 2.69
2241 5671 4.329801 GGAAGTCAAACTTTGCCAACTTTG 59.670 41.667 7.95 1.84 38.80 2.77
2242 5672 4.020662 TGGAAGTCAAACTTTGCCAACTTT 60.021 37.500 7.95 0.00 38.80 2.66
2243 5673 3.513515 TGGAAGTCAAACTTTGCCAACTT 59.486 39.130 6.74 6.74 38.80 2.66
2244 5674 3.096092 TGGAAGTCAAACTTTGCCAACT 58.904 40.909 0.00 0.00 38.80 3.16
2245 5675 3.186909 GTGGAAGTCAAACTTTGCCAAC 58.813 45.455 2.79 0.00 38.80 3.77
2246 5676 2.828520 TGTGGAAGTCAAACTTTGCCAA 59.171 40.909 2.79 0.00 38.80 4.52
2247 5677 2.451490 TGTGGAAGTCAAACTTTGCCA 58.549 42.857 0.00 0.00 38.80 4.92
2248 5678 3.518634 TTGTGGAAGTCAAACTTTGCC 57.481 42.857 0.00 0.00 38.80 4.52
2249 5679 5.854431 TTTTTGTGGAAGTCAAACTTTGC 57.146 34.783 0.00 0.00 38.80 3.68
2250 5680 7.832503 AGATTTTTGTGGAAGTCAAACTTTG 57.167 32.000 0.00 0.00 38.80 2.77
2253 5683 9.014297 CCTATAGATTTTTGTGGAAGTCAAACT 57.986 33.333 0.00 0.00 35.05 2.66
2254 5684 7.755373 GCCTATAGATTTTTGTGGAAGTCAAAC 59.245 37.037 0.00 0.00 35.05 2.93
2255 5685 7.450014 TGCCTATAGATTTTTGTGGAAGTCAAA 59.550 33.333 0.00 0.00 33.76 2.69
2256 5686 6.945435 TGCCTATAGATTTTTGTGGAAGTCAA 59.055 34.615 0.00 0.00 0.00 3.18
2257 5687 6.374333 GTGCCTATAGATTTTTGTGGAAGTCA 59.626 38.462 0.00 0.00 0.00 3.41
2258 5688 6.599638 AGTGCCTATAGATTTTTGTGGAAGTC 59.400 38.462 0.00 0.00 0.00 3.01
2259 5689 6.485171 AGTGCCTATAGATTTTTGTGGAAGT 58.515 36.000 0.00 0.00 0.00 3.01
2260 5690 7.552687 TGTAGTGCCTATAGATTTTTGTGGAAG 59.447 37.037 0.00 0.00 0.00 3.46
2261 5691 7.398829 TGTAGTGCCTATAGATTTTTGTGGAA 58.601 34.615 0.00 0.00 0.00 3.53
2262 5692 6.953101 TGTAGTGCCTATAGATTTTTGTGGA 58.047 36.000 0.00 0.00 0.00 4.02
2263 5693 7.807977 ATGTAGTGCCTATAGATTTTTGTGG 57.192 36.000 0.00 0.00 0.00 4.17
2264 5694 8.677300 ACAATGTAGTGCCTATAGATTTTTGTG 58.323 33.333 0.00 0.00 0.00 3.33
2265 5695 8.677300 CACAATGTAGTGCCTATAGATTTTTGT 58.323 33.333 0.00 0.00 32.04 2.83
2266 5696 8.131100 CCACAATGTAGTGCCTATAGATTTTTG 58.869 37.037 0.00 0.00 38.18 2.44
2267 5697 8.052748 TCCACAATGTAGTGCCTATAGATTTTT 58.947 33.333 0.00 0.00 38.18 1.94
2268 5698 7.573710 TCCACAATGTAGTGCCTATAGATTTT 58.426 34.615 0.00 0.00 38.18 1.82
2269 5699 7.136822 TCCACAATGTAGTGCCTATAGATTT 57.863 36.000 0.00 0.00 38.18 2.17
2270 5700 6.747414 TCCACAATGTAGTGCCTATAGATT 57.253 37.500 0.00 0.00 38.18 2.40
2271 5701 6.747414 TTCCACAATGTAGTGCCTATAGAT 57.253 37.500 0.00 0.00 38.18 1.98
2272 5702 6.464322 CCATTCCACAATGTAGTGCCTATAGA 60.464 42.308 0.00 0.00 38.22 1.98
2273 5703 5.702670 CCATTCCACAATGTAGTGCCTATAG 59.297 44.000 0.00 0.00 38.22 1.31
2274 5704 5.368230 TCCATTCCACAATGTAGTGCCTATA 59.632 40.000 0.00 0.00 38.22 1.31
2275 5705 4.165950 TCCATTCCACAATGTAGTGCCTAT 59.834 41.667 0.00 0.00 38.22 2.57
2276 5706 3.521531 TCCATTCCACAATGTAGTGCCTA 59.478 43.478 0.00 0.00 38.22 3.93
2277 5707 2.308570 TCCATTCCACAATGTAGTGCCT 59.691 45.455 0.00 0.00 38.22 4.75
2278 5708 2.684881 CTCCATTCCACAATGTAGTGCC 59.315 50.000 0.00 0.00 38.22 5.01
2279 5709 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
2280 5710 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
2281 5711 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
2282 5712 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
2283 5713 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
2284 5714 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
2285 5715 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
2286 5716 3.435601 GCATACTCCCTCCATTCCACAAT 60.436 47.826 0.00 0.00 0.00 2.71
2287 5717 2.092429 GCATACTCCCTCCATTCCACAA 60.092 50.000 0.00 0.00 0.00 3.33
2288 5718 1.490490 GCATACTCCCTCCATTCCACA 59.510 52.381 0.00 0.00 0.00 4.17
2289 5719 1.490490 TGCATACTCCCTCCATTCCAC 59.510 52.381 0.00 0.00 0.00 4.02
2290 5720 1.891933 TGCATACTCCCTCCATTCCA 58.108 50.000 0.00 0.00 0.00 3.53
2291 5721 2.439507 TCTTGCATACTCCCTCCATTCC 59.560 50.000 0.00 0.00 0.00 3.01
2292 5722 3.118261 TGTCTTGCATACTCCCTCCATTC 60.118 47.826 0.00 0.00 0.00 2.67
2293 5723 2.846206 TGTCTTGCATACTCCCTCCATT 59.154 45.455 0.00 0.00 0.00 3.16
2294 5724 2.481441 TGTCTTGCATACTCCCTCCAT 58.519 47.619 0.00 0.00 0.00 3.41
2295 5725 1.951209 TGTCTTGCATACTCCCTCCA 58.049 50.000 0.00 0.00 0.00 3.86
2296 5726 2.501723 TCTTGTCTTGCATACTCCCTCC 59.498 50.000 0.00 0.00 0.00 4.30
2297 5727 3.895232 TCTTGTCTTGCATACTCCCTC 57.105 47.619 0.00 0.00 0.00 4.30
2298 5728 4.851639 ATTCTTGTCTTGCATACTCCCT 57.148 40.909 0.00 0.00 0.00 4.20
2299 5729 6.349300 TCTTATTCTTGTCTTGCATACTCCC 58.651 40.000 0.00 0.00 0.00 4.30
2300 5730 7.849804 TTCTTATTCTTGTCTTGCATACTCC 57.150 36.000 0.00 0.00 0.00 3.85
2301 5731 9.713740 CATTTCTTATTCTTGTCTTGCATACTC 57.286 33.333 0.00 0.00 0.00 2.59
2302 5732 9.453572 TCATTTCTTATTCTTGTCTTGCATACT 57.546 29.630 0.00 0.00 0.00 2.12
2303 5733 9.713740 CTCATTTCTTATTCTTGTCTTGCATAC 57.286 33.333 0.00 0.00 0.00 2.39
2326 5757 1.321474 CTGCAACAAAGCCCTTCTCA 58.679 50.000 0.00 0.00 0.00 3.27
2328 5759 1.466851 GCCTGCAACAAAGCCCTTCT 61.467 55.000 0.00 0.00 0.00 2.85
2329 5760 1.005748 GCCTGCAACAAAGCCCTTC 60.006 57.895 0.00 0.00 0.00 3.46
2330 5761 1.458209 AGCCTGCAACAAAGCCCTT 60.458 52.632 0.00 0.00 0.00 3.95
2331 5762 1.905354 GAGCCTGCAACAAAGCCCT 60.905 57.895 0.00 0.00 0.00 5.19
2332 5763 1.538687 ATGAGCCTGCAACAAAGCCC 61.539 55.000 0.00 0.00 0.00 5.19
2333 5764 1.135286 GTATGAGCCTGCAACAAAGCC 60.135 52.381 0.00 0.00 0.00 4.35
2351 5782 1.203212 TCTTTTGGGACCGAGGGAGTA 60.203 52.381 0.00 0.00 0.00 2.59
2355 5786 0.400594 ACTTCTTTTGGGACCGAGGG 59.599 55.000 0.00 0.00 0.00 4.30
2356 5787 1.202770 ACACTTCTTTTGGGACCGAGG 60.203 52.381 0.00 0.00 0.00 4.63
2357 5788 2.143925 GACACTTCTTTTGGGACCGAG 58.856 52.381 0.00 0.00 0.00 4.63
2359 5790 2.143925 GAGACACTTCTTTTGGGACCG 58.856 52.381 0.00 0.00 29.47 4.79
2360 5791 3.208747 TGAGACACTTCTTTTGGGACC 57.791 47.619 0.00 0.00 29.47 4.46
2361 5792 3.003793 GCTTGAGACACTTCTTTTGGGAC 59.996 47.826 0.00 0.00 29.47 4.46
2362 5793 3.117888 AGCTTGAGACACTTCTTTTGGGA 60.118 43.478 0.00 0.00 29.47 4.37
2363 5794 3.217626 AGCTTGAGACACTTCTTTTGGG 58.782 45.455 0.00 0.00 29.47 4.12
2364 5795 4.907879 AAGCTTGAGACACTTCTTTTGG 57.092 40.909 0.00 0.00 29.47 3.28
2366 5797 5.008118 GCACTAAGCTTGAGACACTTCTTTT 59.992 40.000 9.86 0.00 41.15 2.27
2367 5798 4.513318 GCACTAAGCTTGAGACACTTCTTT 59.487 41.667 9.86 0.00 41.15 2.52
2368 5799 4.061596 GCACTAAGCTTGAGACACTTCTT 58.938 43.478 9.86 0.00 41.15 2.52
2369 5800 3.070159 TGCACTAAGCTTGAGACACTTCT 59.930 43.478 9.86 0.00 45.94 2.85
2370 5801 3.393800 TGCACTAAGCTTGAGACACTTC 58.606 45.455 9.86 0.00 45.94 3.01
2371 5802 3.475566 TGCACTAAGCTTGAGACACTT 57.524 42.857 9.86 0.00 45.94 3.16
2372 5803 3.134458 GTTGCACTAAGCTTGAGACACT 58.866 45.455 9.86 0.00 45.94 3.55
2373 5804 3.134458 AGTTGCACTAAGCTTGAGACAC 58.866 45.455 9.86 0.00 45.94 3.67
2375 5806 4.035675 ACAAAGTTGCACTAAGCTTGAGAC 59.964 41.667 9.86 0.00 45.94 3.36
2376 5807 4.199310 ACAAAGTTGCACTAAGCTTGAGA 58.801 39.130 9.86 0.00 45.94 3.27
2377 5808 4.558538 ACAAAGTTGCACTAAGCTTGAG 57.441 40.909 9.86 5.36 45.94 3.02
2378 5809 5.123227 AGTACAAAGTTGCACTAAGCTTGA 58.877 37.500 9.86 0.00 45.94 3.02
2379 5810 5.424121 AGTACAAAGTTGCACTAAGCTTG 57.576 39.130 9.86 1.57 45.94 4.01
2380 5811 7.282450 ACTTTAGTACAAAGTTGCACTAAGCTT 59.718 33.333 13.78 3.48 43.82 3.74
2382 5813 6.956047 ACTTTAGTACAAAGTTGCACTAAGC 58.044 36.000 13.78 0.00 43.82 3.09
2384 5815 9.603921 ACTAACTTTAGTACAAAGTTGCACTAA 57.396 29.630 27.85 11.25 46.41 2.24
2386 5817 9.774413 ATACTAACTTTAGTACAAAGTTGCACT 57.226 29.630 27.85 17.40 45.86 4.40
2412 5843 7.041644 CGTCCCAAATTAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
2413 5844 6.238648 CGTCCCAAATTAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2414 5845 5.238650 CGTCCCAAATTAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2415 5846 4.755123 CGTCCCAAATTAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2416 5847 4.083484 CCGTCCCAAATTAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2417 5848 4.069304 CCGTCCCAAATTAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2418 5849 3.325425 TCCGTCCCAAATTAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2419 5850 3.933332 CTCCGTCCCAAATTAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2420 5851 3.307480 CCTCCGTCCCAAATTAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2421 5852 3.007635 CCTCCGTCCCAAATTAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2422 5853 2.290705 CCCTCCGTCCCAAATTAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2423 5854 2.026636 TCCCTCCGTCCCAAATTAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2424 5855 2.238898 CTCCCTCCGTCCCAAATTAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2425 5856 2.238898 ACTCCCTCCGTCCCAAATTAAG 59.761 50.000 0.00 0.00 0.00 1.85
2426 5857 2.271777 ACTCCCTCCGTCCCAAATTAA 58.728 47.619 0.00 0.00 0.00 1.40
2427 5858 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
2428 5859 1.558294 GTACTCCCTCCGTCCCAAATT 59.442 52.381 0.00 0.00 0.00 1.82
2429 5860 1.201424 GTACTCCCTCCGTCCCAAAT 58.799 55.000 0.00 0.00 0.00 2.32
2430 5861 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2431 5862 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2432 5863 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
2433 5864 2.378378 AATAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
2434 5865 3.959449 AGAAAATAGTACTCCCTCCGTCC 59.041 47.826 0.00 0.00 0.00 4.79
2435 5866 5.595257 AAGAAAATAGTACTCCCTCCGTC 57.405 43.478 0.00 0.00 0.00 4.79
2436 5867 5.068855 GCTAAGAAAATAGTACTCCCTCCGT 59.931 44.000 0.00 0.00 0.00 4.69
2437 5868 5.302313 AGCTAAGAAAATAGTACTCCCTCCG 59.698 44.000 0.00 0.00 0.00 4.63
2438 5869 6.734502 AGCTAAGAAAATAGTACTCCCTCC 57.265 41.667 0.00 0.00 0.00 4.30
2439 5870 8.041919 ACAAAGCTAAGAAAATAGTACTCCCTC 58.958 37.037 0.00 0.00 0.00 4.30
2440 5871 7.919151 ACAAAGCTAAGAAAATAGTACTCCCT 58.081 34.615 0.00 0.00 0.00 4.20
2441 5872 8.563123 AACAAAGCTAAGAAAATAGTACTCCC 57.437 34.615 0.00 0.00 0.00 4.30
2442 5873 9.827411 CAAACAAAGCTAAGAAAATAGTACTCC 57.173 33.333 0.00 0.00 0.00 3.85
2447 5878 8.903820 ACAGTCAAACAAAGCTAAGAAAATAGT 58.096 29.630 0.00 0.00 0.00 2.12
2448 5879 9.173939 CACAGTCAAACAAAGCTAAGAAAATAG 57.826 33.333 0.00 0.00 0.00 1.73
2449 5880 8.134895 CCACAGTCAAACAAAGCTAAGAAAATA 58.865 33.333 0.00 0.00 0.00 1.40
2457 5888 3.879998 TCACCACAGTCAAACAAAGCTA 58.120 40.909 0.00 0.00 0.00 3.32
2468 5899 3.128589 TGCAAGAAACTTTCACCACAGTC 59.871 43.478 4.34 0.00 0.00 3.51
2499 5930 0.523072 GGCTGCATGACGTTCACATT 59.477 50.000 0.50 0.00 0.00 2.71
2508 5939 0.108424 ACTCGAGAAGGCTGCATGAC 60.108 55.000 21.68 0.00 0.00 3.06
2549 5980 2.775911 TTCTGAATCCAGCAGAGTGG 57.224 50.000 0.00 0.00 42.74 4.00
2579 6010 6.628187 CGACATACTTGTACTGAAATTAGCG 58.372 40.000 0.00 0.00 35.79 4.26
2618 6049 3.306818 CCGGTAAGTTTCTAGCGCTATC 58.693 50.000 19.19 9.02 40.54 2.08
2621 6052 0.459759 GCCGGTAAGTTTCTAGCGCT 60.460 55.000 17.26 17.26 40.54 5.92
2638 6069 6.239036 GGTCCATAATTAAAATCAGTGGAGCC 60.239 42.308 15.59 10.28 43.36 4.70
2639 6070 6.239036 GGGTCCATAATTAAAATCAGTGGAGC 60.239 42.308 17.21 17.21 46.49 4.70
2662 6094 3.003689 CACAAGCAGAAAAGTGTACAGGG 59.996 47.826 0.00 0.00 0.00 4.45
2692 6126 9.376075 ACTCACTGAAATCTATATGAAGTTGTG 57.624 33.333 0.00 0.00 0.00 3.33
2931 6368 3.511146 GGAGAAATGGACTGCAATTTGGA 59.489 43.478 0.00 0.00 0.00 3.53
2990 6427 3.334583 TGAGGATCAACTGCTGTTACC 57.665 47.619 8.79 12.14 45.97 2.85
3014 6451 3.600388 CACTCCCTTTTGCTGTAGTAGG 58.400 50.000 0.00 0.00 0.00 3.18
3385 6984 6.403636 GGTGCTACTACTTGAAATGACATTGG 60.404 42.308 0.34 0.00 0.00 3.16
3391 6997 8.486210 AGATAATGGTGCTACTACTTGAAATGA 58.514 33.333 0.00 0.00 0.00 2.57
3521 7136 5.321983 GCTGATCGCTCATACTAAAACAG 57.678 43.478 0.00 0.00 35.14 3.16
3576 7191 6.677781 TGTCCTTGTTCAAACTGTTAAGAG 57.322 37.500 0.00 0.00 0.00 2.85
3577 7192 5.065988 GCTGTCCTTGTTCAAACTGTTAAGA 59.934 40.000 0.00 0.00 0.00 2.10
3615 7230 3.876274 TTGTCGCTAGAATCAGAAGCT 57.124 42.857 0.00 0.00 34.03 3.74
3630 7245 6.494893 TCTAATTTGTCCCTTGATTTGTCG 57.505 37.500 0.00 0.00 0.00 4.35
3676 7291 5.221185 GCATGTGACCAAAGCATCAGATATT 60.221 40.000 0.00 0.00 28.43 1.28
3720 7335 8.691661 AAGTGACTGTTGGTAATGAAACTTAT 57.308 30.769 0.00 0.00 0.00 1.73
3721 7336 7.042321 CGAAGTGACTGTTGGTAATGAAACTTA 60.042 37.037 0.00 0.00 0.00 2.24
3729 7344 2.423577 GGCGAAGTGACTGTTGGTAAT 58.576 47.619 0.00 0.00 0.00 1.89
3888 7503 8.778358 GGATGAAATGATACCTCATACACTTTC 58.222 37.037 0.00 0.00 41.34 2.62
3915 7530 6.534079 CCATGCTACGTAGTACTAAAGCTTTT 59.466 38.462 22.98 2.42 45.11 2.27
4166 7841 2.200373 ACCCAAGAAACTTCCGATGG 57.800 50.000 0.00 0.00 0.00 3.51
4196 7879 3.836365 ACATTGGTCAAACAAAAGGGG 57.164 42.857 0.00 0.00 33.48 4.79
4453 8250 9.397280 GAAGCCACCTAAACTAGAAATCTTTAT 57.603 33.333 0.00 0.00 0.00 1.40
4564 8407 3.055580 TGGCACAAAAATCGGGCC 58.944 55.556 0.00 0.00 44.82 5.80
4654 8497 2.943033 GTTATGTTCCTCCAACCATCGG 59.057 50.000 0.00 0.00 33.51 4.18
4720 8563 6.052840 ACAATTTTCCGAAGATCATCATCG 57.947 37.500 5.27 5.27 37.35 3.84
4958 8801 4.816385 TGCAGAAAGAAAACCACTCACTAG 59.184 41.667 0.00 0.00 0.00 2.57
4967 8810 1.332195 AGGGCTGCAGAAAGAAAACC 58.668 50.000 20.43 6.00 0.00 3.27
4978 8821 0.256752 ACATGCTCATAAGGGCTGCA 59.743 50.000 0.50 0.00 38.05 4.41
5037 8880 7.194607 TGTCGGTATTAAAGTATAGACGGAG 57.805 40.000 0.00 0.00 0.00 4.63
5185 9029 4.095782 GGTTTCTGCAAGTGACTGTTGTAA 59.904 41.667 0.00 0.00 33.76 2.41
5196 9040 2.307098 AGATGCTAGGGTTTCTGCAAGT 59.693 45.455 0.00 0.00 38.96 3.16
5211 9055 2.459086 GCCCAGGGATCCAGATGCT 61.459 63.158 10.89 0.00 0.00 3.79
5232 9076 1.202533 ACATTACCGGAAGATCCTGCG 60.203 52.381 9.46 0.00 33.30 5.18
5416 9263 3.550437 AGGACCAGAGCATATCACAAC 57.450 47.619 0.00 0.00 0.00 3.32
5461 9312 2.157452 CAACCCCCACACCACCCTA 61.157 63.158 0.00 0.00 0.00 3.53
5462 9313 3.507713 CAACCCCCACACCACCCT 61.508 66.667 0.00 0.00 0.00 4.34
5465 9316 4.887190 ACGCAACCCCCACACCAC 62.887 66.667 0.00 0.00 0.00 4.16
5466 9317 4.885270 CACGCAACCCCCACACCA 62.885 66.667 0.00 0.00 0.00 4.17
5549 9402 2.767536 GCGTGCTATGAAGGAAGCA 58.232 52.632 0.44 0.00 45.49 3.91
5595 9448 9.875691 GCACCTAAATTTATTCTCCAGAATTTT 57.124 29.630 7.12 5.24 41.64 1.82
5619 9472 3.754965 AGCTCAGTAACATTTGGAAGCA 58.245 40.909 0.00 0.00 0.00 3.91
5786 9679 0.529378 GCATCTGCTGAAGGGTTTGG 59.471 55.000 0.00 0.00 38.21 3.28
5849 9742 3.607542 GCCGAGAGAAGTAGTCGCTTATC 60.608 52.174 0.00 0.00 36.38 1.75
6004 9901 7.496346 ACATTGTGAAGAATCTAGGGAGTAA 57.504 36.000 0.00 0.00 0.00 2.24
6030 9927 5.054390 TCCAAATTTCTCGCCAATACAAC 57.946 39.130 0.00 0.00 0.00 3.32
6046 9943 7.891498 TTCATCACATGATTCTGATCCAAAT 57.109 32.000 0.00 0.00 39.39 2.32
6236 10133 6.229936 TCAGGCTGTATCGTTTATTTAGGT 57.770 37.500 15.27 0.00 0.00 3.08
6248 10145 2.432146 TGTCACCTCATCAGGCTGTATC 59.568 50.000 15.27 0.00 45.05 2.24
6274 10173 7.328005 CGATGTCGAGATGTTTATGAATCTGAT 59.672 37.037 0.00 0.00 43.02 2.90
6275 10174 6.638468 CGATGTCGAGATGTTTATGAATCTGA 59.362 38.462 0.00 0.00 43.02 3.27
6316 10215 5.014202 TCCATTAAGTAACTTGGCCTTTCC 58.986 41.667 3.32 0.00 0.00 3.13
6321 10220 5.594317 ACATGATCCATTAAGTAACTTGGCC 59.406 40.000 0.00 0.00 0.00 5.36
6387 10286 0.919710 AAGGGCTTCCTGATGGGTAC 59.080 55.000 0.00 0.00 40.74 3.34
6388 10287 1.213296 GAAGGGCTTCCTGATGGGTA 58.787 55.000 0.00 0.00 40.74 3.69
6390 10289 0.106819 CTGAAGGGCTTCCTGATGGG 60.107 60.000 0.00 0.00 40.74 4.00
6454 10382 8.798153 CACTTCTTTTTAAACAGTTCATCACAC 58.202 33.333 1.48 0.00 0.00 3.82
6461 10394 9.788960 AGAATCACACTTCTTTTTAAACAGTTC 57.211 29.630 1.48 0.00 31.38 3.01
6485 10421 5.179452 CCACTAAAAAGGGAATGAGGAGA 57.821 43.478 0.00 0.00 0.00 3.71
6551 10487 5.670485 AGTTTCACCATATCACGCTGATAA 58.330 37.500 10.39 0.00 42.05 1.75
6568 10504 5.596361 TGTCAAATAAGCTTTGGGAGTTTCA 59.404 36.000 3.20 0.00 30.83 2.69
6615 10565 5.012871 TCTGATTGGGGAAATTGCAAATTCA 59.987 36.000 24.67 8.23 0.00 2.57
6699 10660 7.830697 TCGTTTATATCCAGATTCGGGTATAGA 59.169 37.037 2.66 0.00 36.25 1.98
6705 10666 4.495422 CCTCGTTTATATCCAGATTCGGG 58.505 47.826 0.00 0.00 0.00 5.14
6814 10776 1.135094 CATGGCACCCCTGACTCTAT 58.865 55.000 0.00 0.00 0.00 1.98
6817 10779 1.222936 CTCATGGCACCCCTGACTC 59.777 63.158 0.00 0.00 0.00 3.36
6871 10833 1.935300 GCACCTGTAAGACGTGGTGAG 60.935 57.143 21.02 0.05 43.33 3.51
6872 10834 0.032952 GCACCTGTAAGACGTGGTGA 59.967 55.000 21.02 0.00 43.33 4.02
6875 10837 0.732880 CGAGCACCTGTAAGACGTGG 60.733 60.000 0.00 0.00 34.07 4.94
6877 10839 0.892358 TCCGAGCACCTGTAAGACGT 60.892 55.000 0.00 0.00 34.07 4.34
6878 10840 0.179161 CTCCGAGCACCTGTAAGACG 60.179 60.000 0.00 0.00 34.07 4.18
6879 10841 0.173708 CCTCCGAGCACCTGTAAGAC 59.826 60.000 0.00 0.00 34.07 3.01
6880 10842 0.970937 CCCTCCGAGCACCTGTAAGA 60.971 60.000 0.00 0.00 34.07 2.10
6882 10844 0.543410 TTCCCTCCGAGCACCTGTAA 60.543 55.000 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.