Multiple sequence alignment - TraesCS3B01G364900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G364900 chr3B 100.000 5354 0 0 1 5354 576444433 576439080 0.000000e+00 9888
1 TraesCS3B01G364900 chr3D 96.156 3746 132 5 779 4519 439671573 439667835 0.000000e+00 6109
2 TraesCS3B01G364900 chr3D 90.000 610 30 16 3 596 439672196 439671602 0.000000e+00 760
3 TraesCS3B01G364900 chr3D 91.257 549 32 6 4807 5348 439667713 439667174 0.000000e+00 734
4 TraesCS3B01G364900 chr3D 95.161 124 6 0 4643 4766 439667836 439667713 4.230000e-46 196
5 TraesCS3B01G364900 chr3A 96.356 3622 131 1 779 4399 579371117 579367496 0.000000e+00 5956
6 TraesCS3B01G364900 chr3A 92.623 610 27 10 1 596 579371751 579371146 0.000000e+00 861
7 TraesCS3B01G364900 chr3A 95.906 342 12 1 4411 4750 579367387 579367046 2.180000e-153 553
8 TraesCS3B01G364900 chrUn 97.778 405 9 0 3581 3985 478229310 478228906 0.000000e+00 699


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G364900 chr3B 576439080 576444433 5353 True 9888.000000 9888 100.000000 1 5354 1 chr3B.!!$R1 5353
1 TraesCS3B01G364900 chr3D 439667174 439672196 5022 True 1949.750000 6109 93.143500 3 5348 4 chr3D.!!$R1 5345
2 TraesCS3B01G364900 chr3A 579367046 579371751 4705 True 2456.666667 5956 94.961667 1 4750 3 chr3A.!!$R1 4749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 777 0.031043 CCACGTTGGTCTGACACGTA 59.969 55.000 20.99 0.00 35.16 3.57 F
1425 1447 0.438830 GAGAACGTGACACGATTGGC 59.561 55.000 33.12 16.24 46.05 4.52 F
1966 1988 1.152368 GGCAGAATCATGGGAGGGG 59.848 63.158 0.00 0.00 0.00 4.79 F
3450 3472 1.068588 CACGAGTTCACAGGACTTGGA 59.931 52.381 0.00 0.00 33.63 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 1952 0.461870 CCGACATTCTCATTGCGGGA 60.462 55.0 0.00 0.0 33.25 5.14 R
3402 3424 0.792640 GTGTCACATCAGTTGCTCCG 59.207 55.0 0.00 0.0 0.00 4.63 R
3753 3775 2.235898 ACTCTTGAGGGCTGTCAGATTC 59.764 50.0 3.32 0.0 0.00 2.52 R
4982 5106 0.324943 ACTGGGGAGAAATGGTCACG 59.675 55.0 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.231297 GGCATAAAGAAGGCTATATATGTTTGA 57.769 33.333 0.00 0.00 0.00 2.69
231 234 8.918658 CATGACACCAAATTTCTGTATTTTCTG 58.081 33.333 0.00 0.00 0.00 3.02
334 346 3.947834 AGTGTCACTTTGAAAGGAACCTG 59.052 43.478 10.02 0.00 0.00 4.00
354 366 4.446371 CTGAATGATTAGGTCCTGTCACC 58.554 47.826 0.00 3.18 36.58 4.02
405 425 4.722193 GACACCATCCACCACCAG 57.278 61.111 0.00 0.00 0.00 4.00
406 426 1.761174 GACACCATCCACCACCAGT 59.239 57.895 0.00 0.00 0.00 4.00
474 494 1.203492 AGGGGATGGTTCTTCTCCTGT 60.203 52.381 1.96 0.00 42.69 4.00
480 500 6.353602 GGGGATGGTTCTTCTCCTGTTTATTA 60.354 42.308 0.00 0.00 30.48 0.98
482 502 7.780271 GGGATGGTTCTTCTCCTGTTTATTAAT 59.220 37.037 0.00 0.00 0.00 1.40
483 503 8.841300 GGATGGTTCTTCTCCTGTTTATTAATC 58.159 37.037 0.00 0.00 0.00 1.75
484 504 9.396022 GATGGTTCTTCTCCTGTTTATTAATCA 57.604 33.333 0.00 0.00 0.00 2.57
516 537 2.289274 CGATGAGTCTCGTGAGCTGTAT 59.711 50.000 0.00 0.00 34.00 2.29
541 562 4.437239 CACGATCATAAGCAGAACCTTCT 58.563 43.478 0.00 0.00 38.25 2.85
553 574 4.508662 CAGAACCTTCTCCTAACATGACC 58.491 47.826 0.00 0.00 34.74 4.02
565 586 5.070446 TCCTAACATGACCAGGCATAGTTAG 59.930 44.000 18.86 18.86 38.24 2.34
590 611 1.299316 GCACACACACGCTTGCAAT 60.299 52.632 0.00 0.00 34.97 3.56
596 617 1.268692 ACACACGCTTGCAATGTTCAG 60.269 47.619 0.00 0.00 0.00 3.02
597 618 0.311790 ACACGCTTGCAATGTTCAGG 59.688 50.000 0.00 0.00 0.00 3.86
598 619 0.311790 CACGCTTGCAATGTTCAGGT 59.688 50.000 0.00 0.00 0.00 4.00
599 620 1.535028 CACGCTTGCAATGTTCAGGTA 59.465 47.619 0.00 0.00 0.00 3.08
600 621 2.162208 CACGCTTGCAATGTTCAGGTAT 59.838 45.455 0.00 0.00 0.00 2.73
601 622 2.819608 ACGCTTGCAATGTTCAGGTATT 59.180 40.909 0.00 0.00 0.00 1.89
602 623 3.255642 ACGCTTGCAATGTTCAGGTATTT 59.744 39.130 0.00 0.00 0.00 1.40
603 624 4.457603 ACGCTTGCAATGTTCAGGTATTTA 59.542 37.500 0.00 0.00 0.00 1.40
604 625 5.048364 ACGCTTGCAATGTTCAGGTATTTAA 60.048 36.000 0.00 0.00 0.00 1.52
605 626 5.861251 CGCTTGCAATGTTCAGGTATTTAAA 59.139 36.000 0.00 0.00 0.00 1.52
606 627 6.183359 CGCTTGCAATGTTCAGGTATTTAAAC 60.183 38.462 0.00 0.00 0.00 2.01
607 628 6.868339 GCTTGCAATGTTCAGGTATTTAAACT 59.132 34.615 0.00 0.00 0.00 2.66
608 629 7.384932 GCTTGCAATGTTCAGGTATTTAAACTT 59.615 33.333 0.00 0.00 0.00 2.66
609 630 8.586570 TTGCAATGTTCAGGTATTTAAACTTG 57.413 30.769 0.00 0.00 0.00 3.16
610 631 7.721402 TGCAATGTTCAGGTATTTAAACTTGT 58.279 30.769 0.00 0.00 0.00 3.16
611 632 8.200792 TGCAATGTTCAGGTATTTAAACTTGTT 58.799 29.630 0.00 0.00 0.00 2.83
642 663 6.976934 TTTTCATAAGACCTTTCTGGCTTT 57.023 33.333 0.00 0.00 40.22 3.51
643 664 5.964958 TTCATAAGACCTTTCTGGCTTTG 57.035 39.130 0.00 0.00 40.22 2.77
644 665 4.985538 TCATAAGACCTTTCTGGCTTTGT 58.014 39.130 0.00 0.00 40.22 2.83
645 666 4.761739 TCATAAGACCTTTCTGGCTTTGTG 59.238 41.667 0.00 0.00 40.22 3.33
646 667 1.322442 AGACCTTTCTGGCTTTGTGC 58.678 50.000 0.00 0.00 40.22 4.57
647 668 1.032014 GACCTTTCTGGCTTTGTGCA 58.968 50.000 0.00 0.00 45.15 4.57
648 669 0.746659 ACCTTTCTGGCTTTGTGCAC 59.253 50.000 10.75 10.75 45.15 4.57
649 670 0.032540 CCTTTCTGGCTTTGTGCACC 59.967 55.000 15.69 0.00 45.15 5.01
650 671 0.318107 CTTTCTGGCTTTGTGCACCG 60.318 55.000 15.69 3.86 45.15 4.94
651 672 1.733402 TTTCTGGCTTTGTGCACCGG 61.733 55.000 15.69 0.00 45.15 5.28
652 673 2.594303 CTGGCTTTGTGCACCGGA 60.594 61.111 15.69 0.00 45.15 5.14
653 674 2.904866 TGGCTTTGTGCACCGGAC 60.905 61.111 15.69 7.05 45.15 4.79
654 675 2.594592 GGCTTTGTGCACCGGACT 60.595 61.111 15.69 0.00 45.15 3.85
655 676 2.193536 GGCTTTGTGCACCGGACTT 61.194 57.895 15.69 0.00 45.15 3.01
656 677 1.008538 GCTTTGTGCACCGGACTTG 60.009 57.895 15.69 0.00 42.31 3.16
657 678 1.724582 GCTTTGTGCACCGGACTTGT 61.725 55.000 15.69 0.00 42.31 3.16
658 679 1.588674 CTTTGTGCACCGGACTTGTA 58.411 50.000 15.69 0.00 0.00 2.41
659 680 1.263217 CTTTGTGCACCGGACTTGTAC 59.737 52.381 15.69 6.64 0.00 2.90
660 681 0.178301 TTGTGCACCGGACTTGTACA 59.822 50.000 15.69 9.71 37.74 2.90
661 682 0.531090 TGTGCACCGGACTTGTACAC 60.531 55.000 15.69 5.88 35.03 2.90
662 683 0.249741 GTGCACCGGACTTGTACACT 60.250 55.000 9.46 0.00 29.28 3.55
663 684 0.249699 TGCACCGGACTTGTACACTG 60.250 55.000 9.46 0.00 0.00 3.66
664 685 0.249741 GCACCGGACTTGTACACTGT 60.250 55.000 9.46 0.00 0.00 3.55
665 686 1.808891 GCACCGGACTTGTACACTGTT 60.809 52.381 9.46 0.00 0.00 3.16
666 687 2.546373 GCACCGGACTTGTACACTGTTA 60.546 50.000 9.46 0.00 0.00 2.41
667 688 3.719924 CACCGGACTTGTACACTGTTAA 58.280 45.455 9.46 0.00 0.00 2.01
668 689 4.312443 CACCGGACTTGTACACTGTTAAT 58.688 43.478 9.46 0.00 0.00 1.40
669 690 4.151689 CACCGGACTTGTACACTGTTAATG 59.848 45.833 9.46 0.00 0.00 1.90
670 691 3.124636 CCGGACTTGTACACTGTTAATGC 59.875 47.826 0.00 0.00 0.00 3.56
671 692 3.743911 CGGACTTGTACACTGTTAATGCA 59.256 43.478 0.00 0.00 0.00 3.96
672 693 4.212425 CGGACTTGTACACTGTTAATGCAA 59.788 41.667 0.00 0.00 0.00 4.08
673 694 5.277586 CGGACTTGTACACTGTTAATGCAAA 60.278 40.000 0.00 0.00 0.00 3.68
674 695 6.567701 CGGACTTGTACACTGTTAATGCAAAT 60.568 38.462 0.00 0.00 0.00 2.32
675 696 7.145323 GGACTTGTACACTGTTAATGCAAATT 58.855 34.615 0.00 0.00 0.00 1.82
676 697 7.114811 GGACTTGTACACTGTTAATGCAAATTG 59.885 37.037 0.00 0.00 0.00 2.32
677 698 7.711846 ACTTGTACACTGTTAATGCAAATTGA 58.288 30.769 0.00 0.00 0.00 2.57
678 699 8.194104 ACTTGTACACTGTTAATGCAAATTGAA 58.806 29.630 0.00 0.00 0.00 2.69
679 700 7.922505 TGTACACTGTTAATGCAAATTGAAC 57.077 32.000 0.00 0.00 0.00 3.18
680 701 7.484140 TGTACACTGTTAATGCAAATTGAACA 58.516 30.769 0.00 0.00 0.00 3.18
681 702 6.826893 ACACTGTTAATGCAAATTGAACAC 57.173 33.333 0.00 0.00 0.00 3.32
682 703 6.572519 ACACTGTTAATGCAAATTGAACACT 58.427 32.000 0.00 0.00 0.00 3.55
683 704 6.697019 ACACTGTTAATGCAAATTGAACACTC 59.303 34.615 0.00 0.00 0.00 3.51
684 705 6.144402 CACTGTTAATGCAAATTGAACACTCC 59.856 38.462 0.00 0.00 0.00 3.85
685 706 6.154203 TGTTAATGCAAATTGAACACTCCA 57.846 33.333 0.00 0.00 0.00 3.86
686 707 6.577103 TGTTAATGCAAATTGAACACTCCAA 58.423 32.000 0.00 0.00 0.00 3.53
687 708 6.478344 TGTTAATGCAAATTGAACACTCCAAC 59.522 34.615 0.00 0.00 0.00 3.77
688 709 3.077229 TGCAAATTGAACACTCCAACG 57.923 42.857 0.00 0.00 0.00 4.10
689 710 2.685388 TGCAAATTGAACACTCCAACGA 59.315 40.909 0.00 0.00 0.00 3.85
690 711 3.129462 TGCAAATTGAACACTCCAACGAA 59.871 39.130 0.00 0.00 0.00 3.85
691 712 3.730715 GCAAATTGAACACTCCAACGAAG 59.269 43.478 0.00 0.00 0.00 3.79
692 713 3.626028 AATTGAACACTCCAACGAAGC 57.374 42.857 0.00 0.00 0.00 3.86
693 714 2.031258 TTGAACACTCCAACGAAGCA 57.969 45.000 0.00 0.00 0.00 3.91
694 715 2.031258 TGAACACTCCAACGAAGCAA 57.969 45.000 0.00 0.00 0.00 3.91
695 716 1.939934 TGAACACTCCAACGAAGCAAG 59.060 47.619 0.00 0.00 0.00 4.01
696 717 1.264288 GAACACTCCAACGAAGCAAGG 59.736 52.381 0.00 0.00 0.00 3.61
697 718 0.468226 ACACTCCAACGAAGCAAGGA 59.532 50.000 0.00 0.00 0.00 3.36
698 719 1.134220 ACACTCCAACGAAGCAAGGAA 60.134 47.619 0.00 0.00 0.00 3.36
699 720 1.532868 CACTCCAACGAAGCAAGGAAG 59.467 52.381 0.00 0.00 0.00 3.46
700 721 0.519077 CTCCAACGAAGCAAGGAAGC 59.481 55.000 0.00 0.00 0.00 3.86
701 722 0.179032 TCCAACGAAGCAAGGAAGCA 60.179 50.000 0.00 0.00 36.85 3.91
702 723 0.883833 CCAACGAAGCAAGGAAGCAT 59.116 50.000 0.00 0.00 36.85 3.79
703 724 1.401931 CCAACGAAGCAAGGAAGCATG 60.402 52.381 0.00 0.00 36.85 4.06
704 725 1.267806 CAACGAAGCAAGGAAGCATGT 59.732 47.619 0.00 0.00 36.85 3.21
705 726 2.472695 ACGAAGCAAGGAAGCATGTA 57.527 45.000 0.00 0.00 36.85 2.29
706 727 2.076863 ACGAAGCAAGGAAGCATGTAC 58.923 47.619 0.00 0.00 36.85 2.90
707 728 2.076100 CGAAGCAAGGAAGCATGTACA 58.924 47.619 0.00 0.00 36.85 2.90
708 729 2.679837 CGAAGCAAGGAAGCATGTACAT 59.320 45.455 1.41 1.41 36.85 2.29
709 730 3.127548 CGAAGCAAGGAAGCATGTACATT 59.872 43.478 5.37 0.00 36.85 2.71
710 731 4.332543 CGAAGCAAGGAAGCATGTACATTA 59.667 41.667 5.37 0.00 36.85 1.90
711 732 5.008019 CGAAGCAAGGAAGCATGTACATTAT 59.992 40.000 5.37 0.00 36.85 1.28
712 733 5.762825 AGCAAGGAAGCATGTACATTATG 57.237 39.130 5.37 0.00 36.85 1.90
713 734 5.195940 AGCAAGGAAGCATGTACATTATGT 58.804 37.500 5.37 2.58 36.85 2.29
714 735 6.356556 AGCAAGGAAGCATGTACATTATGTA 58.643 36.000 5.37 0.29 36.85 2.29
715 736 6.260936 AGCAAGGAAGCATGTACATTATGTAC 59.739 38.462 23.98 23.98 44.01 2.90
716 737 8.597925 AGCAAGGAAGCATGTACATTATGTACC 61.598 40.741 26.55 14.91 43.58 3.34
726 747 5.902681 GTACATTATGTACCTGACTGCAGA 58.097 41.667 23.35 0.00 45.52 4.26
727 748 5.420725 ACATTATGTACCTGACTGCAGAA 57.579 39.130 23.35 7.24 45.17 3.02
728 749 5.178797 ACATTATGTACCTGACTGCAGAAC 58.821 41.667 23.35 14.31 45.17 3.01
729 750 4.882842 TTATGTACCTGACTGCAGAACA 57.117 40.909 23.35 18.08 45.17 3.18
738 759 2.251600 CTGCAGAACAGGCTTCACC 58.748 57.895 8.42 0.00 43.19 4.02
739 760 0.535780 CTGCAGAACAGGCTTCACCA 60.536 55.000 8.42 0.00 43.19 4.17
740 761 0.819259 TGCAGAACAGGCTTCACCAC 60.819 55.000 0.00 0.00 43.14 4.16
741 762 1.845809 GCAGAACAGGCTTCACCACG 61.846 60.000 0.00 0.00 43.14 4.94
742 763 0.532862 CAGAACAGGCTTCACCACGT 60.533 55.000 0.00 0.00 43.14 4.49
743 764 0.180406 AGAACAGGCTTCACCACGTT 59.820 50.000 0.00 0.00 43.14 3.99
744 765 0.307760 GAACAGGCTTCACCACGTTG 59.692 55.000 0.00 0.00 43.14 4.10
745 766 1.101049 AACAGGCTTCACCACGTTGG 61.101 55.000 2.92 2.92 45.02 3.77
754 775 3.625232 CCACGTTGGTCTGACACG 58.375 61.111 16.19 16.19 31.35 4.49
755 776 1.227147 CCACGTTGGTCTGACACGT 60.227 57.895 17.31 17.31 37.53 4.49
756 777 0.031043 CCACGTTGGTCTGACACGTA 59.969 55.000 20.99 0.00 35.16 3.57
757 778 1.126079 CACGTTGGTCTGACACGTAC 58.874 55.000 20.99 7.95 35.16 3.67
758 779 0.740149 ACGTTGGTCTGACACGTACA 59.260 50.000 20.34 2.56 35.16 2.90
759 780 1.338973 ACGTTGGTCTGACACGTACAT 59.661 47.619 20.34 1.29 35.16 2.29
760 781 2.553602 ACGTTGGTCTGACACGTACATA 59.446 45.455 20.34 0.00 35.16 2.29
761 782 3.004629 ACGTTGGTCTGACACGTACATAA 59.995 43.478 20.34 0.00 35.16 1.90
762 783 3.982701 CGTTGGTCTGACACGTACATAAA 59.017 43.478 10.38 0.00 0.00 1.40
763 784 4.143473 CGTTGGTCTGACACGTACATAAAC 60.143 45.833 10.38 0.00 0.00 2.01
764 785 4.859304 TGGTCTGACACGTACATAAACT 57.141 40.909 10.38 0.00 0.00 2.66
765 786 4.552355 TGGTCTGACACGTACATAAACTG 58.448 43.478 10.38 0.00 0.00 3.16
766 787 4.038282 TGGTCTGACACGTACATAAACTGT 59.962 41.667 10.38 0.00 42.13 3.55
767 788 4.620184 GGTCTGACACGTACATAAACTGTC 59.380 45.833 10.38 0.00 39.39 3.51
768 789 4.620184 GTCTGACACGTACATAAACTGTCC 59.380 45.833 2.24 0.00 39.39 4.02
769 790 4.278919 TCTGACACGTACATAAACTGTCCA 59.721 41.667 0.00 0.00 39.39 4.02
770 791 4.552355 TGACACGTACATAAACTGTCCAG 58.448 43.478 0.00 0.00 39.39 3.86
771 792 3.921677 ACACGTACATAAACTGTCCAGG 58.078 45.455 0.00 0.00 39.39 4.45
772 793 3.322828 ACACGTACATAAACTGTCCAGGT 59.677 43.478 0.00 0.00 39.39 4.00
773 794 3.924686 CACGTACATAAACTGTCCAGGTC 59.075 47.826 0.00 0.00 39.39 3.85
774 795 3.575256 ACGTACATAAACTGTCCAGGTCA 59.425 43.478 0.00 0.00 39.39 4.02
775 796 4.039488 ACGTACATAAACTGTCCAGGTCAA 59.961 41.667 0.00 0.00 39.39 3.18
776 797 4.992319 CGTACATAAACTGTCCAGGTCAAA 59.008 41.667 0.00 0.00 39.39 2.69
777 798 5.642063 CGTACATAAACTGTCCAGGTCAAAT 59.358 40.000 0.00 0.00 39.39 2.32
778 799 6.183360 CGTACATAAACTGTCCAGGTCAAATC 60.183 42.308 0.00 0.00 39.39 2.17
779 800 5.880901 ACATAAACTGTCCAGGTCAAATCT 58.119 37.500 0.00 0.00 29.94 2.40
780 801 6.306987 ACATAAACTGTCCAGGTCAAATCTT 58.693 36.000 0.00 0.00 29.94 2.40
781 802 7.458397 ACATAAACTGTCCAGGTCAAATCTTA 58.542 34.615 0.00 0.00 29.94 2.10
801 822 8.729805 ATCTTAGTTTCACATGGAAGAGAATC 57.270 34.615 0.00 0.00 36.72 2.52
813 834 3.876320 GGAAGAGAATCCATCAGTTGCTC 59.124 47.826 0.00 0.00 39.42 4.26
814 835 4.511527 GAAGAGAATCCATCAGTTGCTCA 58.488 43.478 0.00 0.00 33.66 4.26
856 877 4.914177 AAGGAAAATGCATGGAAATGGT 57.086 36.364 0.00 0.00 0.00 3.55
857 878 7.201992 GGATAAGGAAAATGCATGGAAATGGTA 60.202 37.037 0.00 0.00 0.00 3.25
889 910 2.277084 GGTGAACAAGTCAACACGTCT 58.723 47.619 0.00 0.00 44.12 4.18
890 911 2.030457 GGTGAACAAGTCAACACGTCTG 59.970 50.000 0.00 0.00 44.12 3.51
902 923 2.217750 ACACGTCTGCAAAAGCACATA 58.782 42.857 0.00 0.00 0.00 2.29
929 950 3.329814 TCAGTCCTCACCAGTGTCTACTA 59.670 47.826 0.00 0.00 34.74 1.82
946 967 6.267928 TGTCTACTACTTTCAGCCTTTCTTCT 59.732 38.462 0.00 0.00 0.00 2.85
953 974 4.713792 TTCAGCCTTTCTTCTCCTTCTT 57.286 40.909 0.00 0.00 0.00 2.52
967 988 3.576118 CTCCTTCTTCCTTCTCACACAGA 59.424 47.826 0.00 0.00 0.00 3.41
968 989 4.163427 TCCTTCTTCCTTCTCACACAGAT 58.837 43.478 0.00 0.00 0.00 2.90
979 1000 6.146837 CCTTCTCACACAGATAAACAACTGAG 59.853 42.308 0.00 0.00 37.54 3.35
988 1009 6.263168 ACAGATAAACAACTGAGAAACAAGGG 59.737 38.462 0.00 0.00 37.54 3.95
1053 1075 4.219115 TGCAAACCCTGTTCCAGAAATTA 58.781 39.130 0.00 0.00 32.44 1.40
1056 1078 5.624509 GCAAACCCTGTTCCAGAAATTATCC 60.625 44.000 0.00 0.00 32.44 2.59
1140 1162 3.896888 CCCAGATTCTCTCTCAGCTACAT 59.103 47.826 0.00 0.00 29.16 2.29
1155 1177 1.338337 CTACATGCCTTCCTCGACGAT 59.662 52.381 0.00 0.00 0.00 3.73
1239 1261 4.072839 TCGCATACGACCTAGATGATCTT 58.927 43.478 0.00 0.00 45.12 2.40
1330 1352 0.984995 CGGTTCCCCTTCTTCCTTCT 59.015 55.000 0.00 0.00 0.00 2.85
1401 1423 7.394641 GGGATATTGGAGAGGTTGGATAAAATC 59.605 40.741 0.00 0.00 0.00 2.17
1425 1447 0.438830 GAGAACGTGACACGATTGGC 59.561 55.000 33.12 16.24 46.05 4.52
1470 1492 1.299562 GGCGTGAGACGTCAGAGAGA 61.300 60.000 19.50 0.00 46.84 3.10
1558 1580 3.327626 GTGAGGCTCATGCTATCTGATG 58.672 50.000 21.84 0.00 39.59 3.07
1563 1585 3.055312 GGCTCATGCTATCTGATGATGGA 60.055 47.826 0.00 0.00 39.59 3.41
1571 1593 5.121811 GCTATCTGATGATGGACACAGTTT 58.878 41.667 0.00 0.00 33.64 2.66
1572 1594 5.007430 GCTATCTGATGATGGACACAGTTTG 59.993 44.000 0.00 0.00 33.64 2.93
1573 1595 4.622260 TCTGATGATGGACACAGTTTGA 57.378 40.909 0.00 0.00 33.10 2.69
1577 1599 2.497138 TGATGGACACAGTTTGAGCAG 58.503 47.619 0.00 0.00 0.00 4.24
1579 1601 1.953559 TGGACACAGTTTGAGCAGTC 58.046 50.000 0.00 0.00 0.00 3.51
1587 1609 4.332543 CACAGTTTGAGCAGTCTTTGTGTA 59.667 41.667 0.00 0.00 32.30 2.90
1588 1610 4.572389 ACAGTTTGAGCAGTCTTTGTGTAG 59.428 41.667 0.00 0.00 0.00 2.74
1710 1732 7.830697 TGGATCTATGTGTCTGAATGTTTTGAT 59.169 33.333 0.00 0.00 0.00 2.57
1786 1808 5.628797 TCCTAGCACCAACATGAATATGA 57.371 39.130 0.00 0.00 37.73 2.15
1803 1825 2.479566 TGATGCAGGAAACACTCTCC 57.520 50.000 0.00 0.00 0.00 3.71
1930 1952 5.882557 CTTGGAAGCAAGATAGTGGTAACAT 59.117 40.000 0.00 0.00 41.14 2.71
1932 1954 8.804358 CTTGGAAGCAAGATAGTGGTAACATCC 61.804 44.444 0.00 0.00 41.14 3.51
1947 1969 2.292267 ACATCCCGCAATGAGAATGTC 58.708 47.619 2.66 0.00 0.00 3.06
1966 1988 1.152368 GGCAGAATCATGGGAGGGG 59.848 63.158 0.00 0.00 0.00 4.79
1989 2011 2.234908 AGAGCCCTACAAGTTACAGCAG 59.765 50.000 0.00 0.00 0.00 4.24
1998 2020 2.860735 CAAGTTACAGCAGCTATCGGAC 59.139 50.000 0.00 0.00 0.00 4.79
2006 2028 1.759994 CAGCTATCGGACGATGACAC 58.240 55.000 16.70 4.19 36.17 3.67
2046 2068 2.594131 CATGCATTCAGGGATGGTGAT 58.406 47.619 0.00 0.00 33.49 3.06
2061 2083 1.152798 TGATTGCAGCACACACCCA 60.153 52.632 0.00 0.00 0.00 4.51
2139 2161 3.456380 TCAAAAGCATTAGGGAGCCTT 57.544 42.857 0.00 0.00 34.61 4.35
2256 2278 2.477863 GCGGCTAAGCTACAACCATTTG 60.478 50.000 0.00 0.00 38.83 2.32
2268 2290 1.549203 ACCATTTGCCACCACATCTC 58.451 50.000 0.00 0.00 0.00 2.75
2271 2293 2.299582 CCATTTGCCACCACATCTCAAA 59.700 45.455 0.00 0.00 0.00 2.69
2311 2333 7.279981 TCTGTTCCGTGTATCCAAAAGATTATG 59.720 37.037 0.00 0.00 36.33 1.90
2385 2407 8.083828 TCAGGCAATCTAGAAAGAAGATACTT 57.916 34.615 0.00 0.00 34.73 2.24
2398 2420 6.882768 AGAAGATACTTGAGGATTCTGGTT 57.117 37.500 0.00 0.00 0.00 3.67
2418 2440 8.570488 TCTGGTTATGCATATTTTAATGAGCTG 58.430 33.333 7.36 4.20 0.00 4.24
2526 2548 1.728971 CACTGTGAGCGATTTGAGGAC 59.271 52.381 0.32 0.00 0.00 3.85
2556 2578 5.918608 AGATACGACAATGCCATAAAGACT 58.081 37.500 0.00 0.00 0.00 3.24
2694 2716 5.724370 TCAGTTCCCTGATGGTGTCTTTATA 59.276 40.000 0.00 0.00 42.80 0.98
2854 2876 8.737168 TGTCAAGCTCTATAACTTGCAAATAT 57.263 30.769 0.00 5.19 42.41 1.28
3024 3046 3.053896 GTCTTGAAACGCCCCGGG 61.054 66.667 15.80 15.80 0.00 5.73
3106 3128 3.256383 CCTCAACAATGTGGCTGATGAAA 59.744 43.478 0.00 0.00 33.75 2.69
3180 3202 5.667626 ACACTTTATATGGGATGAGGACTGT 59.332 40.000 0.00 0.00 0.00 3.55
3241 3263 3.646162 AGGCCTTCAACCACATATCGATA 59.354 43.478 7.75 7.75 0.00 2.92
3402 3424 8.355913 CCTTTCCTCAAAAATCTCAATATAGCC 58.644 37.037 0.00 0.00 0.00 3.93
3414 3436 3.324846 TCAATATAGCCGGAGCAACTGAT 59.675 43.478 5.05 0.00 43.56 2.90
3450 3472 1.068588 CACGAGTTCACAGGACTTGGA 59.931 52.381 0.00 0.00 33.63 3.53
3600 3622 1.742308 AGCTGAAGAAGTTACCCCCA 58.258 50.000 0.00 0.00 0.00 4.96
3753 3775 1.195448 CGTGTAGGCTTGCTTTCACAG 59.805 52.381 12.93 4.51 0.00 3.66
3912 3934 2.267324 GAGCGAGGCTTGCTTCCT 59.733 61.111 29.17 8.38 44.18 3.36
3924 3946 2.346766 TGCTTCCTGCTTCAGTTGAA 57.653 45.000 0.00 0.00 43.37 2.69
3938 3960 6.780706 TTCAGTTGAAGAAATCCGTCTAAC 57.219 37.500 0.00 0.00 0.00 2.34
3942 3964 6.368791 CAGTTGAAGAAATCCGTCTAACATCA 59.631 38.462 0.00 0.00 0.00 3.07
3970 3992 5.471116 TCTCTGTTAGCACACGTACTTCTAA 59.529 40.000 0.00 0.00 0.00 2.10
4053 4075 5.185249 TGACTACCCTGACATCAGTAACTTC 59.815 44.000 8.06 0.43 42.27 3.01
4128 4150 1.352622 ACCTCCAGTGTTTGCCTCCA 61.353 55.000 0.00 0.00 0.00 3.86
4129 4151 0.178992 CCTCCAGTGTTTGCCTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
4278 4300 0.400213 AACGATGCCAAGAAGGTGGA 59.600 50.000 0.00 0.00 41.65 4.02
4368 4390 5.698545 GCAGATATAGGAGGTGACACATTTC 59.301 44.000 8.08 1.93 0.00 2.17
4491 4610 8.443160 TCTAAACTGATGTGACGATGATTTTTC 58.557 33.333 0.00 0.00 0.00 2.29
4516 4635 4.065088 TGAGCAAGCAGTTCGAGTTTATT 58.935 39.130 0.00 0.00 0.00 1.40
4600 4719 9.935682 ATCAAAATACTAAACATACTGCGAATG 57.064 29.630 0.00 0.00 0.00 2.67
4602 4721 9.767684 CAAAATACTAAACATACTGCGAATGAA 57.232 29.630 0.00 0.00 0.00 2.57
4781 4902 8.631676 TGTGCATTATAATTTAACACATGCTG 57.368 30.769 12.77 0.00 37.14 4.41
4782 4903 8.465201 TGTGCATTATAATTTAACACATGCTGA 58.535 29.630 12.77 0.00 37.14 4.26
4783 4904 9.299963 GTGCATTATAATTTAACACATGCTGAA 57.700 29.630 0.00 0.00 37.14 3.02
4802 4923 6.528014 CTGAATACTCAGCTGAATCATCAC 57.472 41.667 18.85 6.91 42.66 3.06
4803 4924 5.981174 TGAATACTCAGCTGAATCATCACA 58.019 37.500 18.85 9.31 0.00 3.58
4804 4925 5.814188 TGAATACTCAGCTGAATCATCACAC 59.186 40.000 18.85 4.25 0.00 3.82
4805 4926 3.977134 ACTCAGCTGAATCATCACACT 57.023 42.857 18.85 0.00 0.00 3.55
4810 4931 2.486982 AGCTGAATCATCACACTTGTGC 59.513 45.455 4.38 0.00 45.25 4.57
4818 4939 5.151297 TCATCACACTTGTGCTTATCAGA 57.849 39.130 4.38 0.00 45.25 3.27
4821 4942 7.330262 TCATCACACTTGTGCTTATCAGATTA 58.670 34.615 4.38 0.00 45.25 1.75
4840 4961 5.591877 AGATTAGATCATTGCTTGGGTCAAC 59.408 40.000 0.00 0.00 0.00 3.18
4857 4978 2.497138 CAACTGAGGTTGCATGTGAGA 58.503 47.619 0.00 0.00 44.83 3.27
4873 4994 0.941463 GAGACCCATGCGCGATACAG 60.941 60.000 12.10 0.00 0.00 2.74
4895 5019 3.042682 TGTAGAAGGTTTCCAGACCACA 58.957 45.455 0.00 0.00 42.35 4.17
4898 5022 2.158755 AGAAGGTTTCCAGACCACACTG 60.159 50.000 0.00 0.00 42.35 3.66
4904 5028 1.004080 CCAGACCACACTGCCAGAG 60.004 63.158 0.00 0.00 36.67 3.35
4916 5040 0.918983 TGCCAGAGTTTATCCCCCAG 59.081 55.000 0.00 0.00 0.00 4.45
4945 5069 7.632898 GCCCCTAAAAAGAAGAATTTATCCCAC 60.633 40.741 0.00 0.00 0.00 4.61
4955 5079 2.937469 TTTATCCCACAATTGCAGCG 57.063 45.000 5.05 0.00 0.00 5.18
4970 5094 4.250116 TGCAGCGACAATTTGGTTAAAT 57.750 36.364 0.78 0.00 38.11 1.40
4996 5120 2.233922 TCCTCTTCGTGACCATTTCTCC 59.766 50.000 0.00 0.00 0.00 3.71
5029 5153 6.018751 TGCAATCTAGCATTCTTAATGTCGAC 60.019 38.462 9.11 9.11 40.11 4.20
5033 5157 6.042777 TCTAGCATTCTTAATGTCGACTTGG 58.957 40.000 17.92 5.23 41.01 3.61
5039 5163 1.438651 TAATGTCGACTTGGCAGCAC 58.561 50.000 17.92 0.00 0.00 4.40
5065 5189 5.500825 GCACGAATTGAAACTGCAATTTTT 58.499 33.333 0.00 0.00 45.63 1.94
5078 5202 2.702922 CAATTTTTGTTGGCACGCAAC 58.297 42.857 3.52 0.00 0.00 4.17
5081 5205 2.890847 TTTTGTTGGCACGCAACGGG 62.891 55.000 3.52 0.00 35.47 5.28
5087 5211 2.748647 GCACGCAACGGGGGTTAT 60.749 61.111 0.00 0.00 41.32 1.89
5088 5212 2.337246 GCACGCAACGGGGGTTATT 61.337 57.895 0.00 0.00 41.32 1.40
5098 5222 0.931468 GGGGGTTATTGGGTTAGGCT 59.069 55.000 0.00 0.00 0.00 4.58
5146 5270 1.234821 GTTGGAGCGGACAATGTGAA 58.765 50.000 0.00 0.00 0.00 3.18
5201 5325 2.566529 GGCTGCGGTTGCCTTTAC 59.433 61.111 0.00 0.00 46.38 2.01
5226 5350 3.827898 CTCCGACGAGGGGCAGAC 61.828 72.222 0.00 0.00 41.52 3.51
5227 5351 4.671590 TCCGACGAGGGGCAGACA 62.672 66.667 0.00 0.00 41.52 3.41
5304 5432 0.472471 GGGGACAGACCTCAACAACA 59.528 55.000 0.00 0.00 39.39 3.33
5312 5440 0.814010 ACCTCAACAACAGTCGTGGC 60.814 55.000 0.00 0.00 0.00 5.01
5337 5465 3.006672 CAGAAAACACCCTGCTCGT 57.993 52.632 0.00 0.00 0.00 4.18
5339 5467 0.468226 AGAAAACACCCTGCTCGTCA 59.532 50.000 0.00 0.00 0.00 4.35
5348 5476 2.710971 CTGCTCGTCACTCGCAACG 61.711 63.158 0.00 0.00 40.17 4.10
5349 5477 2.428569 GCTCGTCACTCGCAACGA 60.429 61.111 0.00 0.00 44.91 3.85
5350 5478 2.708059 GCTCGTCACTCGCAACGAC 61.708 63.158 0.00 0.00 42.49 4.34
5351 5479 1.370051 CTCGTCACTCGCAACGACA 60.370 57.895 0.00 0.00 42.49 4.35
5352 5480 1.597700 CTCGTCACTCGCAACGACAC 61.598 60.000 0.00 0.00 42.49 3.67
5353 5481 1.942223 CGTCACTCGCAACGACACA 60.942 57.895 0.00 0.00 41.29 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
231 234 7.687445 AGATTTCAAAAATGCAACACAAGAAC 58.313 30.769 0.00 0.00 0.00 3.01
334 346 3.741388 CGGGTGACAGGACCTAATCATTC 60.741 52.174 10.14 6.75 36.14 2.67
354 366 0.817654 TCACACCTCACTATCTGCGG 59.182 55.000 0.00 0.00 0.00 5.69
402 422 0.322008 GAGAGCCTTTGGTGGACTGG 60.322 60.000 0.00 0.00 0.00 4.00
404 424 0.689623 CAGAGAGCCTTTGGTGGACT 59.310 55.000 0.00 0.00 0.00 3.85
405 425 0.398318 ACAGAGAGCCTTTGGTGGAC 59.602 55.000 0.00 0.00 0.00 4.02
406 426 0.687354 GACAGAGAGCCTTTGGTGGA 59.313 55.000 0.00 0.00 0.00 4.02
480 500 7.206981 AGACTCATCGTCAACAAAAATGATT 57.793 32.000 0.00 0.00 45.32 2.57
482 502 5.107491 CGAGACTCATCGTCAACAAAAATGA 60.107 40.000 2.82 0.00 45.32 2.57
483 503 5.075448 CGAGACTCATCGTCAACAAAAATG 58.925 41.667 2.82 0.00 45.32 2.32
484 504 5.269459 CGAGACTCATCGTCAACAAAAAT 57.731 39.130 2.82 0.00 45.32 1.82
506 527 2.270923 TGATCGTGCAATACAGCTCAC 58.729 47.619 0.00 0.00 34.99 3.51
510 531 3.248363 TGCTTATGATCGTGCAATACAGC 59.752 43.478 0.00 0.00 32.12 4.40
516 537 2.677836 GGTTCTGCTTATGATCGTGCAA 59.322 45.455 0.00 0.00 34.90 4.08
541 562 3.384168 ACTATGCCTGGTCATGTTAGGA 58.616 45.455 14.10 3.45 33.33 2.94
572 593 1.299316 ATTGCAAGCGTGTGTGTGC 60.299 52.632 4.94 0.00 37.51 4.57
573 594 0.248580 ACATTGCAAGCGTGTGTGTG 60.249 50.000 4.94 0.00 0.00 3.82
574 595 0.455410 AACATTGCAAGCGTGTGTGT 59.545 45.000 4.94 0.00 0.00 3.72
575 596 1.122849 GAACATTGCAAGCGTGTGTG 58.877 50.000 4.94 0.00 0.00 3.82
590 611 9.616156 TCAGTAACAAGTTTAAATACCTGAACA 57.384 29.630 0.00 0.00 0.00 3.18
625 646 2.884639 GCACAAAGCCAGAAAGGTCTTA 59.115 45.455 0.00 0.00 40.61 2.10
642 663 0.531090 GTGTACAAGTCCGGTGCACA 60.531 55.000 20.43 0.00 46.71 4.57
643 664 2.231820 GTGTACAAGTCCGGTGCAC 58.768 57.895 8.80 8.80 42.88 4.57
644 665 0.249699 CAGTGTACAAGTCCGGTGCA 60.250 55.000 0.00 0.00 0.00 4.57
645 666 0.249741 ACAGTGTACAAGTCCGGTGC 60.250 55.000 0.00 0.00 0.00 5.01
646 667 2.234300 AACAGTGTACAAGTCCGGTG 57.766 50.000 0.00 0.00 0.00 4.94
647 668 4.312443 CATTAACAGTGTACAAGTCCGGT 58.688 43.478 0.00 0.00 0.00 5.28
648 669 3.124636 GCATTAACAGTGTACAAGTCCGG 59.875 47.826 0.00 0.00 0.00 5.14
649 670 3.743911 TGCATTAACAGTGTACAAGTCCG 59.256 43.478 0.00 0.00 0.00 4.79
650 671 5.682943 TTGCATTAACAGTGTACAAGTCC 57.317 39.130 0.00 0.00 0.00 3.85
651 672 7.860373 TCAATTTGCATTAACAGTGTACAAGTC 59.140 33.333 0.00 0.00 0.00 3.01
652 673 7.711846 TCAATTTGCATTAACAGTGTACAAGT 58.288 30.769 0.00 0.00 0.00 3.16
653 674 8.479280 GTTCAATTTGCATTAACAGTGTACAAG 58.521 33.333 0.00 0.00 0.00 3.16
654 675 7.976175 TGTTCAATTTGCATTAACAGTGTACAA 59.024 29.630 0.00 0.00 0.00 2.41
655 676 7.433719 GTGTTCAATTTGCATTAACAGTGTACA 59.566 33.333 0.00 0.00 31.19 2.90
656 677 7.647715 AGTGTTCAATTTGCATTAACAGTGTAC 59.352 33.333 0.00 0.00 33.60 2.90
657 678 7.711846 AGTGTTCAATTTGCATTAACAGTGTA 58.288 30.769 0.00 0.00 33.60 2.90
658 679 6.572519 AGTGTTCAATTTGCATTAACAGTGT 58.427 32.000 7.75 0.00 33.60 3.55
659 680 6.144402 GGAGTGTTCAATTTGCATTAACAGTG 59.856 38.462 11.58 0.00 34.68 3.66
660 681 6.183360 TGGAGTGTTCAATTTGCATTAACAGT 60.183 34.615 8.12 8.12 36.64 3.55
661 682 6.215121 TGGAGTGTTCAATTTGCATTAACAG 58.785 36.000 0.00 0.00 31.19 3.16
662 683 6.154203 TGGAGTGTTCAATTTGCATTAACA 57.846 33.333 0.00 0.00 0.00 2.41
663 684 6.345723 CGTTGGAGTGTTCAATTTGCATTAAC 60.346 38.462 0.00 0.00 0.00 2.01
664 685 5.689514 CGTTGGAGTGTTCAATTTGCATTAA 59.310 36.000 0.00 0.00 0.00 1.40
665 686 5.009110 TCGTTGGAGTGTTCAATTTGCATTA 59.991 36.000 0.00 0.00 0.00 1.90
666 687 4.050553 CGTTGGAGTGTTCAATTTGCATT 58.949 39.130 0.00 0.00 0.00 3.56
667 688 3.317711 TCGTTGGAGTGTTCAATTTGCAT 59.682 39.130 0.00 0.00 0.00 3.96
668 689 2.685388 TCGTTGGAGTGTTCAATTTGCA 59.315 40.909 0.00 0.00 0.00 4.08
669 690 3.347958 TCGTTGGAGTGTTCAATTTGC 57.652 42.857 0.00 0.00 0.00 3.68
670 691 3.730715 GCTTCGTTGGAGTGTTCAATTTG 59.269 43.478 0.00 0.00 0.00 2.32
671 692 3.380004 TGCTTCGTTGGAGTGTTCAATTT 59.620 39.130 0.00 0.00 0.00 1.82
672 693 2.948979 TGCTTCGTTGGAGTGTTCAATT 59.051 40.909 0.00 0.00 0.00 2.32
673 694 2.571212 TGCTTCGTTGGAGTGTTCAAT 58.429 42.857 0.00 0.00 0.00 2.57
674 695 2.031258 TGCTTCGTTGGAGTGTTCAA 57.969 45.000 0.00 0.00 0.00 2.69
675 696 1.939934 CTTGCTTCGTTGGAGTGTTCA 59.060 47.619 0.00 0.00 0.00 3.18
676 697 1.264288 CCTTGCTTCGTTGGAGTGTTC 59.736 52.381 0.00 0.00 0.00 3.18
677 698 1.134220 TCCTTGCTTCGTTGGAGTGTT 60.134 47.619 0.00 0.00 0.00 3.32
678 699 0.468226 TCCTTGCTTCGTTGGAGTGT 59.532 50.000 0.00 0.00 0.00 3.55
679 700 1.532868 CTTCCTTGCTTCGTTGGAGTG 59.467 52.381 0.00 0.00 0.00 3.51
680 701 1.884235 CTTCCTTGCTTCGTTGGAGT 58.116 50.000 0.00 0.00 0.00 3.85
681 702 0.519077 GCTTCCTTGCTTCGTTGGAG 59.481 55.000 0.00 0.00 0.00 3.86
682 703 0.179032 TGCTTCCTTGCTTCGTTGGA 60.179 50.000 0.00 0.00 0.00 3.53
683 704 0.883833 ATGCTTCCTTGCTTCGTTGG 59.116 50.000 0.00 0.00 0.00 3.77
684 705 1.267806 ACATGCTTCCTTGCTTCGTTG 59.732 47.619 0.00 0.00 0.00 4.10
685 706 1.609208 ACATGCTTCCTTGCTTCGTT 58.391 45.000 0.00 0.00 0.00 3.85
686 707 2.076863 GTACATGCTTCCTTGCTTCGT 58.923 47.619 0.00 0.00 0.00 3.85
687 708 2.076100 TGTACATGCTTCCTTGCTTCG 58.924 47.619 0.00 0.00 0.00 3.79
688 709 4.708726 AATGTACATGCTTCCTTGCTTC 57.291 40.909 9.63 0.00 0.00 3.86
689 710 5.653769 ACATAATGTACATGCTTCCTTGCTT 59.346 36.000 9.63 0.00 0.00 3.91
690 711 5.195940 ACATAATGTACATGCTTCCTTGCT 58.804 37.500 9.63 0.00 0.00 3.91
691 712 5.505173 ACATAATGTACATGCTTCCTTGC 57.495 39.130 9.63 0.00 0.00 4.01
704 725 6.071051 TGTTCTGCAGTCAGGTACATAATGTA 60.071 38.462 14.67 0.00 40.69 2.29
705 726 5.178797 GTTCTGCAGTCAGGTACATAATGT 58.821 41.667 14.67 0.00 40.69 2.71
706 727 5.178061 TGTTCTGCAGTCAGGTACATAATG 58.822 41.667 14.67 0.00 40.69 1.90
707 728 5.420725 TGTTCTGCAGTCAGGTACATAAT 57.579 39.130 14.67 0.00 40.69 1.28
708 729 4.322725 CCTGTTCTGCAGTCAGGTACATAA 60.323 45.833 32.24 11.27 43.55 1.90
709 730 3.195610 CCTGTTCTGCAGTCAGGTACATA 59.804 47.826 32.24 6.47 43.55 2.29
710 731 2.027745 CCTGTTCTGCAGTCAGGTACAT 60.028 50.000 32.24 0.00 43.55 2.29
711 732 1.344438 CCTGTTCTGCAGTCAGGTACA 59.656 52.381 32.24 19.73 43.55 2.90
712 733 2.086054 CCTGTTCTGCAGTCAGGTAC 57.914 55.000 32.24 17.31 43.55 3.34
716 737 1.155042 GAAGCCTGTTCTGCAGTCAG 58.845 55.000 24.01 24.01 43.55 3.51
717 738 0.469494 TGAAGCCTGTTCTGCAGTCA 59.531 50.000 14.67 13.10 43.55 3.41
718 739 0.871057 GTGAAGCCTGTTCTGCAGTC 59.129 55.000 14.67 9.03 43.55 3.51
719 740 0.536006 GGTGAAGCCTGTTCTGCAGT 60.536 55.000 14.67 0.00 43.55 4.40
720 741 0.535780 TGGTGAAGCCTGTTCTGCAG 60.536 55.000 7.63 7.63 44.63 4.41
721 742 0.819259 GTGGTGAAGCCTGTTCTGCA 60.819 55.000 0.00 0.00 38.35 4.41
722 743 1.845809 CGTGGTGAAGCCTGTTCTGC 61.846 60.000 0.00 0.00 38.35 4.26
723 744 0.532862 ACGTGGTGAAGCCTGTTCTG 60.533 55.000 0.00 0.00 38.35 3.02
724 745 0.180406 AACGTGGTGAAGCCTGTTCT 59.820 50.000 0.00 0.00 38.35 3.01
725 746 0.307760 CAACGTGGTGAAGCCTGTTC 59.692 55.000 0.00 0.00 35.42 3.18
726 747 1.101049 CCAACGTGGTGAAGCCTGTT 61.101 55.000 0.00 0.00 37.13 3.16
727 748 1.525995 CCAACGTGGTGAAGCCTGT 60.526 57.895 0.00 0.00 38.35 4.00
728 749 3.343972 CCAACGTGGTGAAGCCTG 58.656 61.111 0.00 0.00 38.35 4.85
737 758 3.625232 CGTGTCAGACCAACGTGG 58.375 61.111 5.47 0.00 45.02 4.94
740 761 2.060326 ATGTACGTGTCAGACCAACG 57.940 50.000 10.98 10.98 42.82 4.10
741 762 4.986659 AGTTTATGTACGTGTCAGACCAAC 59.013 41.667 0.00 0.00 0.00 3.77
742 763 4.986034 CAGTTTATGTACGTGTCAGACCAA 59.014 41.667 0.00 0.00 0.00 3.67
743 764 4.038282 ACAGTTTATGTACGTGTCAGACCA 59.962 41.667 0.00 0.00 41.60 4.02
744 765 4.553323 ACAGTTTATGTACGTGTCAGACC 58.447 43.478 0.00 0.00 41.60 3.85
745 766 4.620184 GGACAGTTTATGTACGTGTCAGAC 59.380 45.833 0.00 0.00 44.17 3.51
746 767 4.278919 TGGACAGTTTATGTACGTGTCAGA 59.721 41.667 0.00 0.00 46.91 3.27
747 768 4.552355 TGGACAGTTTATGTACGTGTCAG 58.448 43.478 0.00 0.00 46.91 3.51
748 769 4.552355 CTGGACAGTTTATGTACGTGTCA 58.448 43.478 0.00 0.00 46.91 3.58
749 770 3.924686 CCTGGACAGTTTATGTACGTGTC 59.075 47.826 0.00 0.00 46.91 3.67
750 771 3.322828 ACCTGGACAGTTTATGTACGTGT 59.677 43.478 0.00 0.00 46.91 4.49
751 772 3.921677 ACCTGGACAGTTTATGTACGTG 58.078 45.455 0.00 0.00 46.91 4.49
752 773 3.575256 TGACCTGGACAGTTTATGTACGT 59.425 43.478 0.00 0.00 46.91 3.57
753 774 4.182693 TGACCTGGACAGTTTATGTACG 57.817 45.455 0.00 0.00 46.91 3.67
754 775 6.879458 AGATTTGACCTGGACAGTTTATGTAC 59.121 38.462 0.00 0.00 44.17 2.90
755 776 7.016153 AGATTTGACCTGGACAGTTTATGTA 57.984 36.000 0.00 0.00 44.17 2.29
757 778 6.824305 AAGATTTGACCTGGACAGTTTATG 57.176 37.500 0.00 0.00 0.00 1.90
758 779 7.690256 ACTAAGATTTGACCTGGACAGTTTAT 58.310 34.615 0.00 0.00 0.00 1.40
759 780 7.074653 ACTAAGATTTGACCTGGACAGTTTA 57.925 36.000 0.00 0.00 0.00 2.01
760 781 5.941788 ACTAAGATTTGACCTGGACAGTTT 58.058 37.500 0.00 0.00 0.00 2.66
761 782 5.568620 ACTAAGATTTGACCTGGACAGTT 57.431 39.130 0.00 0.00 0.00 3.16
762 783 5.568620 AACTAAGATTTGACCTGGACAGT 57.431 39.130 0.00 0.00 0.00 3.55
763 784 5.997746 TGAAACTAAGATTTGACCTGGACAG 59.002 40.000 0.00 0.00 0.00 3.51
764 785 5.763204 GTGAAACTAAGATTTGACCTGGACA 59.237 40.000 0.00 0.00 0.00 4.02
765 786 5.763204 TGTGAAACTAAGATTTGACCTGGAC 59.237 40.000 0.00 0.00 38.04 4.02
766 787 5.935945 TGTGAAACTAAGATTTGACCTGGA 58.064 37.500 0.00 0.00 38.04 3.86
767 788 6.349611 CCATGTGAAACTAAGATTTGACCTGG 60.350 42.308 0.00 0.00 36.02 4.45
768 789 6.430925 TCCATGTGAAACTAAGATTTGACCTG 59.569 38.462 0.00 0.00 38.04 4.00
769 790 6.542821 TCCATGTGAAACTAAGATTTGACCT 58.457 36.000 0.00 0.00 38.04 3.85
770 791 6.817765 TCCATGTGAAACTAAGATTTGACC 57.182 37.500 0.00 0.00 38.04 4.02
771 792 8.099364 TCTTCCATGTGAAACTAAGATTTGAC 57.901 34.615 0.00 0.00 38.04 3.18
772 793 8.156820 TCTCTTCCATGTGAAACTAAGATTTGA 58.843 33.333 0.00 0.00 38.04 2.69
773 794 8.327941 TCTCTTCCATGTGAAACTAAGATTTG 57.672 34.615 0.00 0.00 38.04 2.32
774 795 8.924511 TTCTCTTCCATGTGAAACTAAGATTT 57.075 30.769 0.00 0.00 38.04 2.17
775 796 9.171877 GATTCTCTTCCATGTGAAACTAAGATT 57.828 33.333 0.00 0.00 38.04 2.40
776 797 7.772757 GGATTCTCTTCCATGTGAAACTAAGAT 59.227 37.037 0.00 0.00 34.89 2.40
777 798 7.106239 GGATTCTCTTCCATGTGAAACTAAGA 58.894 38.462 0.00 0.00 34.89 2.10
778 799 6.881065 TGGATTCTCTTCCATGTGAAACTAAG 59.119 38.462 0.00 0.00 40.90 2.18
779 800 6.778821 TGGATTCTCTTCCATGTGAAACTAA 58.221 36.000 0.00 0.00 40.90 2.24
780 801 6.373005 TGGATTCTCTTCCATGTGAAACTA 57.627 37.500 0.00 0.00 40.90 2.24
781 802 5.246981 TGGATTCTCTTCCATGTGAAACT 57.753 39.130 0.00 0.00 40.90 2.66
813 834 1.134007 TCCTGGGCATCAGTAGCAATG 60.134 52.381 0.00 0.00 41.83 2.82
814 835 1.216064 TCCTGGGCATCAGTAGCAAT 58.784 50.000 0.00 0.00 41.83 3.56
865 886 2.011222 GTGTTGACTTGTTCACCCGAA 58.989 47.619 0.00 0.00 32.26 4.30
902 923 0.485099 ACTGGTGAGGACTGAGGACT 59.515 55.000 0.00 0.00 0.00 3.85
929 950 4.103943 AGAAGGAGAAGAAAGGCTGAAAGT 59.896 41.667 0.00 0.00 35.30 2.66
946 967 3.576861 TCTGTGTGAGAAGGAAGAAGGA 58.423 45.455 0.00 0.00 0.00 3.36
953 974 5.991606 CAGTTGTTTATCTGTGTGAGAAGGA 59.008 40.000 0.00 0.00 33.12 3.36
967 988 6.605594 TGTTCCCTTGTTTCTCAGTTGTTTAT 59.394 34.615 0.00 0.00 0.00 1.40
968 989 5.946972 TGTTCCCTTGTTTCTCAGTTGTTTA 59.053 36.000 0.00 0.00 0.00 2.01
988 1009 2.187073 CTGCCATGGGAGCTTGTTC 58.813 57.895 21.32 0.00 0.00 3.18
1053 1075 0.173708 GGTCGAGAAGTGCTTCGGAT 59.826 55.000 6.32 0.00 43.97 4.18
1056 1078 0.039074 AGTGGTCGAGAAGTGCTTCG 60.039 55.000 6.32 0.00 43.97 3.79
1140 1162 2.184322 GCATCGTCGAGGAAGGCA 59.816 61.111 22.38 0.00 0.00 4.75
1155 1177 3.630013 AGCTGCTTCACCTCGGCA 61.630 61.111 0.00 0.00 37.06 5.69
1163 1185 2.357881 CGTCTGCCAGCTGCTTCA 60.358 61.111 8.66 4.80 42.00 3.02
1239 1261 2.430248 TGGCTGTATACCTGTCGAGA 57.570 50.000 0.00 0.00 0.00 4.04
1401 1423 0.933047 TCGTGTCACGTTCTCTTGCG 60.933 55.000 23.82 0.00 43.14 4.85
1413 1435 1.191489 TCTGGAGGCCAATCGTGTCA 61.191 55.000 5.01 0.00 30.80 3.58
1470 1492 3.322254 CCACAAGAGAACTAGACTGTGGT 59.678 47.826 10.24 7.66 40.25 4.16
1479 1501 5.717178 AGCTGAACTATCCACAAGAGAACTA 59.283 40.000 0.00 0.00 0.00 2.24
1482 1504 4.774726 AGAGCTGAACTATCCACAAGAGAA 59.225 41.667 0.00 0.00 0.00 2.87
1558 1580 2.481952 GACTGCTCAAACTGTGTCCATC 59.518 50.000 0.00 0.00 0.00 3.51
1563 1585 3.127548 CACAAAGACTGCTCAAACTGTGT 59.872 43.478 0.00 0.00 31.98 3.72
1571 1593 3.133901 TGGAACTACACAAAGACTGCTCA 59.866 43.478 0.00 0.00 0.00 4.26
1572 1594 3.728845 TGGAACTACACAAAGACTGCTC 58.271 45.455 0.00 0.00 0.00 4.26
1573 1595 3.134804 ACTGGAACTACACAAAGACTGCT 59.865 43.478 0.00 0.00 0.00 4.24
1577 1599 5.569413 CAACAACTGGAACTACACAAAGAC 58.431 41.667 0.00 0.00 0.00 3.01
1611 1633 8.946523 ATCTGCATAAGAGTGGTCTTACCAAGT 61.947 40.741 0.00 0.00 45.99 3.16
1623 1645 4.758688 TGTACACCATCTGCATAAGAGTG 58.241 43.478 0.00 0.00 38.67 3.51
1710 1732 4.431416 TTCTTGTGTTAGCTTTCTCCCA 57.569 40.909 0.00 0.00 0.00 4.37
1786 1808 1.980765 TCTGGAGAGTGTTTCCTGCAT 59.019 47.619 0.00 0.00 35.67 3.96
1803 1825 4.635769 TTGCCCCGCAATACTCTG 57.364 55.556 0.00 0.00 43.99 3.35
1891 1913 4.344104 CTTCCAAGCCCTCCTGAAATTAA 58.656 43.478 0.00 0.00 0.00 1.40
1926 1948 2.684881 GACATTCTCATTGCGGGATGTT 59.315 45.455 5.34 0.00 0.00 2.71
1930 1952 0.461870 CCGACATTCTCATTGCGGGA 60.462 55.000 0.00 0.00 33.25 5.14
1932 1954 1.353103 GCCGACATTCTCATTGCGG 59.647 57.895 0.00 0.00 37.06 5.69
1947 1969 1.228063 CCCTCCCATGATTCTGCCG 60.228 63.158 0.00 0.00 0.00 5.69
1966 1988 3.194968 TGCTGTAACTTGTAGGGCTCTAC 59.805 47.826 17.33 17.33 44.57 2.59
1989 2011 0.669077 AGGTGTCATCGTCCGATAGC 59.331 55.000 1.31 0.00 32.93 2.97
1998 2020 0.744874 ATACGGACCAGGTGTCATCG 59.255 55.000 0.00 0.00 46.38 3.84
2006 2028 1.473434 GGCTCTTGAATACGGACCAGG 60.473 57.143 0.00 0.00 0.00 4.45
2046 2068 2.044551 TGTGGGTGTGTGCTGCAA 60.045 55.556 2.77 0.00 0.00 4.08
2056 2078 2.033141 CACCTCCAGCTGTGGGTG 59.967 66.667 28.60 28.60 45.11 4.61
2061 2083 2.114616 CTTCCTATCACCTCCAGCTGT 58.885 52.381 13.81 0.00 0.00 4.40
2121 2143 3.268072 AGAGAAGGCTCCCTAATGCTTTT 59.732 43.478 0.00 0.00 42.30 2.27
2256 2278 1.267806 CACTGTTTGAGATGTGGTGGC 59.732 52.381 0.00 0.00 0.00 5.01
2268 2290 3.450578 ACAGAATGCAAAGCACTGTTTG 58.549 40.909 8.80 0.00 41.04 2.93
2271 2293 2.035066 GGAACAGAATGCAAAGCACTGT 59.965 45.455 8.80 8.80 44.05 3.55
2385 2407 9.639563 TTAAAATATGCATAACCAGAATCCTCA 57.360 29.630 11.13 0.00 0.00 3.86
2398 2420 8.514594 GCTTACCAGCTCATTAAAATATGCATA 58.485 33.333 9.27 9.27 43.51 3.14
2526 2548 1.593006 GCATTGTCGTATCTTGTCCCG 59.407 52.381 0.00 0.00 0.00 5.14
2556 2578 4.009002 TGCATGGAAATGAAAGATGACGA 58.991 39.130 0.00 0.00 0.00 4.20
2672 2694 6.636454 TTATAAAGACACCATCAGGGAACT 57.364 37.500 0.00 0.00 46.44 3.01
2694 2716 9.408648 TCAAGAACTCTAAGGAATTGAAGTTTT 57.591 29.630 0.00 0.00 0.00 2.43
3024 3046 5.673337 TTCTTAACTCTGTGATGTTGTGC 57.327 39.130 0.00 0.00 0.00 4.57
3142 3164 8.731605 CCATATAAAGTGTAGAGCTCGAAGATA 58.268 37.037 8.37 0.53 33.89 1.98
3180 3202 6.605471 TGCTGATCTGAAGGAGTAAGTTTA 57.395 37.500 3.42 0.00 0.00 2.01
3402 3424 0.792640 GTGTCACATCAGTTGCTCCG 59.207 55.000 0.00 0.00 0.00 4.63
3414 3436 2.611751 CTCGTGTCCAATTTGTGTCACA 59.388 45.455 0.18 0.18 32.90 3.58
3450 3472 9.995003 TCTAATGCTGGAAAACATTTTATTTGT 57.005 25.926 0.00 0.00 37.63 2.83
3600 3622 3.692593 GTGTTGTAAGTGTTGGTGGAACT 59.307 43.478 0.00 0.00 36.74 3.01
3753 3775 2.235898 ACTCTTGAGGGCTGTCAGATTC 59.764 50.000 3.32 0.00 0.00 2.52
3924 3946 5.028549 AGCATGATGTTAGACGGATTTCT 57.971 39.130 0.00 0.00 0.00 2.52
3937 3959 3.900966 TGCTAACAGAGAGCATGATGT 57.099 42.857 0.00 0.00 44.89 3.06
3960 3982 7.169308 CAGTATTGTAGGCCATTTAGAAGTACG 59.831 40.741 5.01 0.00 0.00 3.67
3970 3992 3.181465 CGAGGACAGTATTGTAGGCCATT 60.181 47.826 5.01 0.00 37.76 3.16
4053 4075 1.351017 TGAGGTAAAAGCTCCAGTGGG 59.649 52.381 9.92 0.89 41.77 4.61
4128 4150 4.530161 AGTGAGGAGACTTTATGCAGACTT 59.470 41.667 0.00 0.00 44.43 3.01
4129 4151 4.093011 AGTGAGGAGACTTTATGCAGACT 58.907 43.478 0.00 0.00 44.43 3.24
4278 4300 1.751924 GCTATCTTGACTCGGTCCTGT 59.248 52.381 2.23 0.00 0.00 4.00
4354 4376 6.037610 GTCATTATGAGGAAATGTGTCACCTC 59.962 42.308 0.00 0.00 46.16 3.85
4368 4390 7.500720 TTGCAGTATCAATGTCATTATGAGG 57.499 36.000 0.00 0.00 0.00 3.86
4403 4425 8.380742 ACTCTTTATTGAGACTAATTGGAGGA 57.619 34.615 0.00 0.00 37.50 3.71
4491 4610 0.725686 CTCGAACTGCTTGCTCATGG 59.274 55.000 0.00 0.00 0.00 3.66
4516 4635 3.431626 CCACCCTATGACTGTTGCGATAA 60.432 47.826 0.00 0.00 0.00 1.75
4552 4671 7.741785 TGATGGTCTAGTTTGTTTCTTTCCTA 58.258 34.615 0.00 0.00 0.00 2.94
4583 4702 9.559958 AAAAGAATTCATTCGCAGTATGTTTAG 57.440 29.630 8.44 0.00 41.56 1.85
4662 4783 3.873910 ACACTATTACACTCATGGCCAC 58.126 45.455 8.16 0.00 0.00 5.01
4780 4901 5.814188 GTGTGATGATTCAGCTGAGTATTCA 59.186 40.000 17.43 16.20 30.85 2.57
4781 4902 6.047870 AGTGTGATGATTCAGCTGAGTATTC 58.952 40.000 17.43 13.93 30.85 1.75
4782 4903 5.987098 AGTGTGATGATTCAGCTGAGTATT 58.013 37.500 17.43 4.80 30.85 1.89
4783 4904 5.611128 AGTGTGATGATTCAGCTGAGTAT 57.389 39.130 17.43 8.69 30.85 2.12
4784 4905 5.173664 CAAGTGTGATGATTCAGCTGAGTA 58.826 41.667 17.43 3.10 30.85 2.59
4785 4906 3.977134 AGTGTGATGATTCAGCTGAGT 57.023 42.857 17.43 14.80 30.85 3.41
4786 4907 4.001652 ACAAGTGTGATGATTCAGCTGAG 58.998 43.478 17.43 2.84 30.85 3.35
4787 4908 4.011966 ACAAGTGTGATGATTCAGCTGA 57.988 40.909 13.74 13.74 30.85 4.26
4788 4909 7.276584 AAGCACAAGTGTGATGATTCAGCTG 62.277 44.000 15.54 7.63 44.74 4.24
4789 4910 5.286295 AAGCACAAGTGTGATGATTCAGCT 61.286 41.667 15.54 0.00 44.74 4.24
4790 4911 3.057736 AAGCACAAGTGTGATGATTCAGC 60.058 43.478 15.54 0.00 44.74 4.26
4791 4912 4.761235 AAGCACAAGTGTGATGATTCAG 57.239 40.909 15.54 0.00 44.74 3.02
4792 4913 5.939296 TGATAAGCACAAGTGTGATGATTCA 59.061 36.000 15.54 9.77 44.74 2.57
4793 4914 6.314648 TCTGATAAGCACAAGTGTGATGATTC 59.685 38.462 15.54 7.53 44.74 2.52
4794 4915 6.175471 TCTGATAAGCACAAGTGTGATGATT 58.825 36.000 15.54 6.31 44.74 2.57
4795 4916 5.737860 TCTGATAAGCACAAGTGTGATGAT 58.262 37.500 15.54 7.45 44.74 2.45
4796 4917 5.151297 TCTGATAAGCACAAGTGTGATGA 57.849 39.130 15.54 2.06 44.74 2.92
4797 4918 6.432607 AATCTGATAAGCACAAGTGTGATG 57.567 37.500 15.54 0.00 44.74 3.07
4801 4922 7.559486 TGATCTAATCTGATAAGCACAAGTGT 58.441 34.615 1.79 0.00 0.00 3.55
4802 4923 8.604640 ATGATCTAATCTGATAAGCACAAGTG 57.395 34.615 0.00 0.00 0.00 3.16
4803 4924 9.053840 CAATGATCTAATCTGATAAGCACAAGT 57.946 33.333 0.00 0.00 0.00 3.16
4804 4925 8.016229 GCAATGATCTAATCTGATAAGCACAAG 58.984 37.037 0.00 0.00 0.00 3.16
4805 4926 7.718314 AGCAATGATCTAATCTGATAAGCACAA 59.282 33.333 0.00 0.00 0.00 3.33
4810 4931 7.664731 ACCCAAGCAATGATCTAATCTGATAAG 59.335 37.037 0.00 0.00 0.00 1.73
4818 4939 5.359009 CAGTTGACCCAAGCAATGATCTAAT 59.641 40.000 0.00 0.00 0.00 1.73
4821 4942 3.087031 CAGTTGACCCAAGCAATGATCT 58.913 45.455 0.00 0.00 0.00 2.75
4840 4961 1.446907 GGTCTCACATGCAACCTCAG 58.553 55.000 0.00 0.00 0.00 3.35
4857 4978 1.521457 CACTGTATCGCGCATGGGT 60.521 57.895 8.75 0.00 0.00 4.51
4873 4994 3.181458 TGTGGTCTGGAAACCTTCTACAC 60.181 47.826 0.00 0.00 40.20 2.90
4895 5019 0.919710 GGGGGATAAACTCTGGCAGT 59.080 55.000 15.27 0.00 36.64 4.40
4898 5022 0.919710 ACTGGGGGATAAACTCTGGC 59.080 55.000 0.00 0.00 0.00 4.85
4904 5028 0.686441 GGGGCAACTGGGGGATAAAC 60.686 60.000 0.00 0.00 0.00 2.01
4916 5040 7.764443 GGATAAATTCTTCTTTTTAGGGGCAAC 59.236 37.037 0.00 0.00 0.00 4.17
4945 5069 2.406130 ACCAAATTGTCGCTGCAATTG 58.594 42.857 13.55 0.00 45.17 2.32
4950 5074 5.590104 AAATTTAACCAAATTGTCGCTGC 57.410 34.783 0.00 0.00 42.29 5.25
4970 5094 6.472887 AGAAATGGTCACGAAGAGGATTAAA 58.527 36.000 0.00 0.00 0.00 1.52
4982 5106 0.324943 ACTGGGGAGAAATGGTCACG 59.675 55.000 0.00 0.00 0.00 4.35
4996 5120 1.825090 TGCTAGATTGCACAACTGGG 58.175 50.000 0.00 0.00 38.12 4.45
5033 5157 4.741781 AATTCGTGCGCGTGCTGC 62.742 61.111 23.16 13.70 43.34 5.25
5039 5163 1.655697 GCAGTTTCAATTCGTGCGCG 61.656 55.000 14.79 14.79 39.92 6.86
5078 5202 0.466739 GCCTAACCCAATAACCCCCG 60.467 60.000 0.00 0.00 0.00 5.73
5081 5205 2.107726 CCCTAGCCTAACCCAATAACCC 59.892 54.545 0.00 0.00 0.00 4.11
5082 5206 2.781757 ACCCTAGCCTAACCCAATAACC 59.218 50.000 0.00 0.00 0.00 2.85
5083 5207 4.657504 AGTACCCTAGCCTAACCCAATAAC 59.342 45.833 0.00 0.00 0.00 1.89
5084 5208 4.899486 AGTACCCTAGCCTAACCCAATAA 58.101 43.478 0.00 0.00 0.00 1.40
5085 5209 4.078454 TGAGTACCCTAGCCTAACCCAATA 60.078 45.833 0.00 0.00 0.00 1.90
5086 5210 3.311103 TGAGTACCCTAGCCTAACCCAAT 60.311 47.826 0.00 0.00 0.00 3.16
5087 5211 2.044769 TGAGTACCCTAGCCTAACCCAA 59.955 50.000 0.00 0.00 0.00 4.12
5088 5212 1.647506 TGAGTACCCTAGCCTAACCCA 59.352 52.381 0.00 0.00 0.00 4.51
5098 5222 3.244582 ACACCAACATGTGAGTACCCTA 58.755 45.455 0.00 0.00 39.57 3.53
5146 5270 3.842923 CTCTCATCCTGCCGCCGT 61.843 66.667 0.00 0.00 0.00 5.68
5201 5325 3.578272 CTCGTCGGAGGAGAGGCG 61.578 72.222 20.11 0.00 36.61 5.52
5223 5347 1.517832 GTACATGGCCTCGCTGTCT 59.482 57.895 3.32 0.00 0.00 3.41
5224 5348 1.521681 GGTACATGGCCTCGCTGTC 60.522 63.158 3.32 0.00 0.00 3.51
5225 5349 2.584608 GGTACATGGCCTCGCTGT 59.415 61.111 3.32 5.18 0.00 4.40
5226 5350 2.586079 CGGTACATGGCCTCGCTG 60.586 66.667 3.32 0.00 0.00 5.18
5227 5351 3.849951 CCGGTACATGGCCTCGCT 61.850 66.667 3.32 0.00 0.00 4.93
5304 5432 1.317613 TTCTGCAATTTGCCACGACT 58.682 45.000 18.27 0.00 44.23 4.18
5320 5448 0.468226 TGACGAGCAGGGTGTTTTCT 59.532 50.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.