Multiple sequence alignment - TraesCS3B01G363200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G363200 chr3B 100.000 4549 0 0 1 4549 574684624 574680076 0.000000e+00 8401.0
1 TraesCS3B01G363200 chr3B 92.105 190 12 3 3328 3517 740380318 740380504 9.700000e-67 265.0
2 TraesCS3B01G363200 chr3A 90.137 3802 187 74 178 3897 577566319 577562624 0.000000e+00 4771.0
3 TraesCS3B01G363200 chr3A 86.134 714 43 16 2831 3495 591692667 591691961 0.000000e+00 719.0
4 TraesCS3B01G363200 chr3A 94.203 69 4 0 4481 4549 577562177 577562109 6.220000e-19 106.0
5 TraesCS3B01G363200 chr3D 89.724 2501 113 60 1210 3629 438609943 438607506 0.000000e+00 3062.0
6 TraesCS3B01G363200 chr3D 88.921 1038 53 26 163 1190 438610906 438609921 0.000000e+00 1223.0
7 TraesCS3B01G363200 chr3D 83.732 209 21 6 3679 3887 438607488 438607293 7.770000e-43 185.0
8 TraesCS3B01G363200 chr3D 93.684 95 2 2 4459 4549 438568903 438568809 6.140000e-29 139.0
9 TraesCS3B01G363200 chr3D 91.304 46 1 1 3946 3988 438607228 438607183 4.910000e-05 60.2
10 TraesCS3B01G363200 chr7D 91.513 919 48 10 2629 3533 70219789 70220691 0.000000e+00 1238.0
11 TraesCS3B01G363200 chr7D 92.021 376 20 7 3147 3518 556663310 556662941 1.880000e-143 520.0
12 TraesCS3B01G363200 chr7A 90.719 959 38 22 2128 3056 199441765 199440828 0.000000e+00 1230.0
13 TraesCS3B01G363200 chrUn 90.107 839 46 14 2216 3037 295946036 295945218 0.000000e+00 1055.0
14 TraesCS3B01G363200 chrUn 92.488 213 5 6 2728 2935 67446189 67445983 1.240000e-75 294.0
15 TraesCS3B01G363200 chrUn 92.488 213 5 6 2728 2935 337804617 337804823 1.240000e-75 294.0
16 TraesCS3B01G363200 chrUn 100.000 28 0 0 2186 2213 295946079 295946052 8.000000e-03 52.8
17 TraesCS3B01G363200 chr4A 90.107 839 46 14 2216 3037 611287422 611288240 0.000000e+00 1055.0
18 TraesCS3B01G363200 chr4A 100.000 28 0 0 2186 2213 611287379 611287406 8.000000e-03 52.8
19 TraesCS3B01G363200 chr6A 85.154 714 48 15 2831 3495 165817058 165817762 0.000000e+00 678.0
20 TraesCS3B01G363200 chr2A 91.733 375 25 5 3147 3518 272967808 272967437 2.430000e-142 516.0
21 TraesCS3B01G363200 chr2A 90.957 376 26 5 3147 3518 272956440 272956811 2.440000e-137 499.0
22 TraesCS3B01G363200 chr5D 91.489 376 24 6 3147 3518 561348647 561348276 1.130000e-140 510.0
23 TraesCS3B01G363200 chr5D 82.432 222 32 6 2855 3071 495402517 495402298 2.160000e-43 187.0
24 TraesCS3B01G363200 chr1A 91.467 375 26 4 3147 3518 346785341 346785712 1.130000e-140 510.0
25 TraesCS3B01G363200 chr7B 93.396 212 8 3 2724 2935 614495952 614496157 4.420000e-80 309.0
26 TraesCS3B01G363200 chr7B 91.518 224 13 3 2712 2935 614553403 614553620 2.060000e-78 303.0
27 TraesCS3B01G363200 chr4B 98.387 62 1 0 3072 3133 624108550 624108611 4.810000e-20 110.0
28 TraesCS3B01G363200 chr5B 95.349 43 2 0 4489 4531 543293197 543293239 8.170000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G363200 chr3B 574680076 574684624 4548 True 8401.00 8401 100.00000 1 4549 1 chr3B.!!$R1 4548
1 TraesCS3B01G363200 chr3A 577562109 577566319 4210 True 2438.50 4771 92.17000 178 4549 2 chr3A.!!$R2 4371
2 TraesCS3B01G363200 chr3A 591691961 591692667 706 True 719.00 719 86.13400 2831 3495 1 chr3A.!!$R1 664
3 TraesCS3B01G363200 chr3D 438607183 438610906 3723 True 1132.55 3062 88.42025 163 3988 4 chr3D.!!$R2 3825
4 TraesCS3B01G363200 chr7D 70219789 70220691 902 False 1238.00 1238 91.51300 2629 3533 1 chr7D.!!$F1 904
5 TraesCS3B01G363200 chr7A 199440828 199441765 937 True 1230.00 1230 90.71900 2128 3056 1 chr7A.!!$R1 928
6 TraesCS3B01G363200 chrUn 295945218 295946079 861 True 553.90 1055 95.05350 2186 3037 2 chrUn.!!$R2 851
7 TraesCS3B01G363200 chr4A 611287379 611288240 861 False 553.90 1055 95.05350 2186 3037 2 chr4A.!!$F1 851
8 TraesCS3B01G363200 chr6A 165817058 165817762 704 False 678.00 678 85.15400 2831 3495 1 chr6A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 326 0.107654 CAGCTGGTACCTGGCCTTAC 60.108 60.0 19.31 2.57 0.00 2.34 F
557 576 0.541863 CTAGTGCCCCCGTTCAATCT 59.458 55.0 0.00 0.00 0.00 2.40 F
1529 1559 0.183971 TTTAGGTGGTGGTGGTGGTG 59.816 55.0 0.00 0.00 0.00 4.17 F
1734 1768 0.446616 GTTTCGGTGCGATTTCCTCC 59.553 55.0 0.00 0.00 35.23 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1160 1186 0.462047 CCCATCTTTTCCCGAGACCG 60.462 60.0 0.00 0.0 0.00 4.79 R
2485 2550 0.861837 GCACTCGTTCTGTCAACAGG 59.138 55.0 10.13 0.0 43.91 4.00 R
2609 2677 1.018148 CCGTGAGATACAGCGACTCT 58.982 55.0 0.00 0.0 0.00 3.24 R
3576 3729 0.742281 CATCGCACTCCCAAGTCCAG 60.742 60.0 0.00 0.0 31.71 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.898983 AAAACACAAAATCAATGCTCAAAAAG 57.101 26.923 0.00 0.00 0.00 2.27
36 37 7.846644 AACACAAAATCAATGCTCAAAAAGA 57.153 28.000 0.00 0.00 0.00 2.52
37 38 8.441312 AACACAAAATCAATGCTCAAAAAGAT 57.559 26.923 0.00 0.00 0.00 2.40
38 39 8.080083 ACACAAAATCAATGCTCAAAAAGATC 57.920 30.769 0.00 0.00 0.00 2.75
39 40 7.929785 ACACAAAATCAATGCTCAAAAAGATCT 59.070 29.630 0.00 0.00 0.00 2.75
40 41 8.221100 CACAAAATCAATGCTCAAAAAGATCTG 58.779 33.333 0.00 0.00 0.00 2.90
41 42 8.145767 ACAAAATCAATGCTCAAAAAGATCTGA 58.854 29.630 0.00 0.00 0.00 3.27
42 43 8.984764 CAAAATCAATGCTCAAAAAGATCTGAA 58.015 29.630 0.00 0.00 0.00 3.02
43 44 9.720769 AAAATCAATGCTCAAAAAGATCTGAAT 57.279 25.926 0.00 0.00 0.00 2.57
44 45 9.720769 AAATCAATGCTCAAAAAGATCTGAATT 57.279 25.926 0.00 0.00 0.00 2.17
45 46 8.703604 ATCAATGCTCAAAAAGATCTGAATTG 57.296 30.769 0.00 2.53 0.00 2.32
46 47 7.663827 TCAATGCTCAAAAAGATCTGAATTGT 58.336 30.769 0.00 0.00 0.00 2.71
47 48 7.597369 TCAATGCTCAAAAAGATCTGAATTGTG 59.403 33.333 0.00 4.76 0.00 3.33
48 49 6.638096 TGCTCAAAAAGATCTGAATTGTGA 57.362 33.333 15.80 8.98 0.00 3.58
49 50 6.441274 TGCTCAAAAAGATCTGAATTGTGAC 58.559 36.000 15.80 10.36 0.00 3.67
50 51 5.860716 GCTCAAAAAGATCTGAATTGTGACC 59.139 40.000 15.80 0.75 0.00 4.02
51 52 6.331369 TCAAAAAGATCTGAATTGTGACCC 57.669 37.500 0.00 0.00 0.00 4.46
52 53 6.070656 TCAAAAAGATCTGAATTGTGACCCT 58.929 36.000 0.00 0.00 0.00 4.34
53 54 6.550854 TCAAAAAGATCTGAATTGTGACCCTT 59.449 34.615 0.00 0.00 0.00 3.95
54 55 7.723616 TCAAAAAGATCTGAATTGTGACCCTTA 59.276 33.333 0.00 0.00 0.00 2.69
55 56 8.526147 CAAAAAGATCTGAATTGTGACCCTTAT 58.474 33.333 0.00 0.00 0.00 1.73
56 57 8.655935 AAAAGATCTGAATTGTGACCCTTATT 57.344 30.769 0.00 0.00 0.00 1.40
57 58 7.872113 AAGATCTGAATTGTGACCCTTATTC 57.128 36.000 0.00 0.00 0.00 1.75
58 59 6.962182 AGATCTGAATTGTGACCCTTATTCA 58.038 36.000 0.00 0.00 36.08 2.57
59 60 7.405292 AGATCTGAATTGTGACCCTTATTCAA 58.595 34.615 0.00 0.00 36.78 2.69
60 61 7.890127 AGATCTGAATTGTGACCCTTATTCAAA 59.110 33.333 0.00 0.00 36.78 2.69
61 62 7.452880 TCTGAATTGTGACCCTTATTCAAAG 57.547 36.000 0.00 0.00 36.78 2.77
62 63 7.004086 TCTGAATTGTGACCCTTATTCAAAGT 58.996 34.615 0.00 0.00 36.78 2.66
63 64 7.505585 TCTGAATTGTGACCCTTATTCAAAGTT 59.494 33.333 0.00 0.00 36.78 2.66
64 65 8.017418 TGAATTGTGACCCTTATTCAAAGTTT 57.983 30.769 0.00 0.00 34.92 2.66
65 66 9.137459 TGAATTGTGACCCTTATTCAAAGTTTA 57.863 29.630 0.00 0.00 34.92 2.01
103 104 9.683069 ACGGAGGTTATAACTTTTATATGTACG 57.317 33.333 15.05 7.03 0.00 3.67
104 105 9.132521 CGGAGGTTATAACTTTTATATGTACGG 57.867 37.037 15.05 0.00 0.00 4.02
105 106 9.987272 GGAGGTTATAACTTTTATATGTACGGT 57.013 33.333 15.05 0.00 0.00 4.83
113 114 7.169035 ACTTTTATATGTACGGTACATTGCG 57.831 36.000 31.87 18.86 46.69 4.85
114 115 6.201425 ACTTTTATATGTACGGTACATTGCGG 59.799 38.462 31.87 20.55 46.69 5.69
115 116 2.512485 TATGTACGGTACATTGCGGG 57.488 50.000 31.87 0.00 46.69 6.13
116 117 0.538118 ATGTACGGTACATTGCGGGT 59.462 50.000 24.33 5.36 46.69 5.28
117 118 0.321021 TGTACGGTACATTGCGGGTT 59.679 50.000 16.63 0.00 32.89 4.11
118 119 1.270732 TGTACGGTACATTGCGGGTTT 60.271 47.619 16.63 0.00 32.89 3.27
119 120 2.028658 TGTACGGTACATTGCGGGTTTA 60.029 45.455 16.63 0.00 32.89 2.01
120 121 1.729284 ACGGTACATTGCGGGTTTAG 58.271 50.000 0.00 0.00 0.00 1.85
121 122 1.275856 ACGGTACATTGCGGGTTTAGA 59.724 47.619 0.00 0.00 0.00 2.10
122 123 2.093341 ACGGTACATTGCGGGTTTAGAT 60.093 45.455 0.00 0.00 0.00 1.98
123 124 2.286833 CGGTACATTGCGGGTTTAGATG 59.713 50.000 0.00 0.00 0.00 2.90
124 125 3.537580 GGTACATTGCGGGTTTAGATGA 58.462 45.455 0.00 0.00 0.00 2.92
125 126 3.311596 GGTACATTGCGGGTTTAGATGAC 59.688 47.826 0.00 0.00 0.00 3.06
126 127 3.066291 ACATTGCGGGTTTAGATGACA 57.934 42.857 0.00 0.00 0.00 3.58
127 128 2.747446 ACATTGCGGGTTTAGATGACAC 59.253 45.455 0.00 0.00 0.00 3.67
128 129 2.552599 TTGCGGGTTTAGATGACACA 57.447 45.000 0.00 0.00 0.00 3.72
129 130 2.552599 TGCGGGTTTAGATGACACAA 57.447 45.000 0.00 0.00 0.00 3.33
130 131 2.422597 TGCGGGTTTAGATGACACAAG 58.577 47.619 0.00 0.00 0.00 3.16
131 132 1.130561 GCGGGTTTAGATGACACAAGC 59.869 52.381 0.00 0.00 0.00 4.01
132 133 2.699954 CGGGTTTAGATGACACAAGCT 58.300 47.619 0.00 0.00 0.00 3.74
133 134 3.074412 CGGGTTTAGATGACACAAGCTT 58.926 45.455 0.00 0.00 0.00 3.74
134 135 3.120199 CGGGTTTAGATGACACAAGCTTG 60.120 47.826 24.84 24.84 0.00 4.01
135 136 3.191371 GGGTTTAGATGACACAAGCTTGG 59.809 47.826 29.18 19.84 0.00 3.61
136 137 3.821033 GGTTTAGATGACACAAGCTTGGT 59.179 43.478 29.18 22.69 0.00 3.67
137 138 5.001232 GGTTTAGATGACACAAGCTTGGTA 58.999 41.667 29.18 13.09 0.00 3.25
138 139 5.472137 GGTTTAGATGACACAAGCTTGGTAA 59.528 40.000 29.18 17.44 0.00 2.85
139 140 6.371389 GTTTAGATGACACAAGCTTGGTAAC 58.629 40.000 29.18 17.85 0.00 2.50
140 141 3.067106 AGATGACACAAGCTTGGTAACG 58.933 45.455 29.18 14.39 42.51 3.18
141 142 0.941542 TGACACAAGCTTGGTAACGC 59.058 50.000 29.18 12.88 42.51 4.84
142 143 0.237498 GACACAAGCTTGGTAACGCC 59.763 55.000 29.18 9.09 42.51 5.68
143 144 1.206578 CACAAGCTTGGTAACGCCG 59.793 57.895 29.18 2.17 41.21 6.46
144 145 2.175811 CAAGCTTGGTAACGCCGC 59.824 61.111 19.14 0.00 41.21 6.53
145 146 3.053896 AAGCTTGGTAACGCCGCC 61.054 61.111 0.00 0.00 41.21 6.13
148 149 2.818274 CTTGGTAACGCCGCCCTC 60.818 66.667 0.00 0.00 41.21 4.30
149 150 3.310860 CTTGGTAACGCCGCCCTCT 62.311 63.158 0.00 0.00 41.21 3.69
150 151 1.952102 CTTGGTAACGCCGCCCTCTA 61.952 60.000 0.00 0.00 41.21 2.43
151 152 1.332144 TTGGTAACGCCGCCCTCTAT 61.332 55.000 0.00 0.00 41.21 1.98
152 153 0.467844 TGGTAACGCCGCCCTCTATA 60.468 55.000 0.00 0.00 41.21 1.31
153 154 0.243095 GGTAACGCCGCCCTCTATAG 59.757 60.000 0.00 0.00 0.00 1.31
154 155 1.242076 GTAACGCCGCCCTCTATAGA 58.758 55.000 1.69 1.69 0.00 1.98
155 156 1.610522 GTAACGCCGCCCTCTATAGAA 59.389 52.381 3.57 0.00 0.00 2.10
156 157 1.117150 AACGCCGCCCTCTATAGAAA 58.883 50.000 3.57 0.00 0.00 2.52
157 158 0.674534 ACGCCGCCCTCTATAGAAAG 59.325 55.000 3.57 0.00 0.00 2.62
158 159 0.959553 CGCCGCCCTCTATAGAAAGA 59.040 55.000 3.57 0.00 0.00 2.52
159 160 1.068194 CGCCGCCCTCTATAGAAAGAG 60.068 57.143 3.57 0.13 42.30 2.85
160 161 1.964933 GCCGCCCTCTATAGAAAGAGT 59.035 52.381 3.57 0.00 41.27 3.24
161 162 2.365941 GCCGCCCTCTATAGAAAGAGTT 59.634 50.000 3.57 0.00 41.27 3.01
165 166 5.984323 CCGCCCTCTATAGAAAGAGTTAAAC 59.016 44.000 3.57 0.00 41.27 2.01
228 229 9.715121 TTCGCTTTAGGAAAGAGTTAAAGAATA 57.285 29.630 3.15 0.00 41.02 1.75
269 277 8.487313 TCGGAAAGAGAATTTCATATTTTCGA 57.513 30.769 14.93 14.93 0.00 3.71
293 307 4.145052 AGAAGAGGTTGAATGTTTCCACC 58.855 43.478 3.02 3.02 43.79 4.61
294 308 3.593442 AGAGGTTGAATGTTTCCACCA 57.407 42.857 11.68 0.00 45.37 4.17
295 309 3.490348 AGAGGTTGAATGTTTCCACCAG 58.510 45.455 11.68 0.00 45.37 4.00
311 325 1.271840 CCAGCTGGTACCTGGCCTTA 61.272 60.000 25.53 0.00 42.98 2.69
312 326 0.107654 CAGCTGGTACCTGGCCTTAC 60.108 60.000 19.31 2.57 0.00 2.34
356 373 6.407299 GGCCAGTGAATGAATGAACCATAAAT 60.407 38.462 0.00 0.00 0.00 1.40
357 374 7.201902 GGCCAGTGAATGAATGAACCATAAATA 60.202 37.037 0.00 0.00 0.00 1.40
358 375 8.196771 GCCAGTGAATGAATGAACCATAAATAA 58.803 33.333 0.00 0.00 0.00 1.40
384 401 3.775661 AAGAAAACCACACGTCAAAGG 57.224 42.857 0.00 0.00 0.00 3.11
479 498 2.996168 ATATCCAACGCGGCTCTGGC 62.996 60.000 12.47 0.00 37.82 4.85
517 536 2.190488 CTCGCTCCCCTTTCCAGCTT 62.190 60.000 0.00 0.00 0.00 3.74
557 576 0.541863 CTAGTGCCCCCGTTCAATCT 59.458 55.000 0.00 0.00 0.00 2.40
695 715 2.125912 CGACAGGCTCGGACCTTG 60.126 66.667 0.00 0.00 38.26 3.61
717 737 2.027007 CCCGTCCTCGTCCTATATCTCT 60.027 54.545 0.00 0.00 35.01 3.10
776 796 3.268103 AACTCCCCCATCACGCCAC 62.268 63.158 0.00 0.00 0.00 5.01
787 807 2.202878 ACGCCACCGATTGATCCG 60.203 61.111 0.00 0.00 38.29 4.18
826 846 3.194861 CGAGGCAAAGGTCGATTCATAA 58.805 45.455 0.00 0.00 38.50 1.90
849 869 2.405594 CGAGGCGAGAAGAGTCGG 59.594 66.667 0.00 0.00 40.44 4.79
850 870 2.107292 CGAGGCGAGAAGAGTCGGA 61.107 63.158 0.00 0.00 40.44 4.55
851 871 1.725066 GAGGCGAGAAGAGTCGGAG 59.275 63.158 0.00 0.00 40.44 4.63
852 872 1.720694 GAGGCGAGAAGAGTCGGAGG 61.721 65.000 0.00 0.00 40.44 4.30
853 873 2.776913 GGCGAGAAGAGTCGGAGGG 61.777 68.421 0.00 0.00 40.44 4.30
854 874 2.047443 GCGAGAAGAGTCGGAGGGT 61.047 63.158 0.00 0.00 40.44 4.34
855 875 1.803943 CGAGAAGAGTCGGAGGGTG 59.196 63.158 0.00 0.00 36.26 4.61
856 876 0.677098 CGAGAAGAGTCGGAGGGTGA 60.677 60.000 0.00 0.00 36.26 4.02
857 877 1.546961 GAGAAGAGTCGGAGGGTGAA 58.453 55.000 0.00 0.00 0.00 3.18
858 878 1.474879 GAGAAGAGTCGGAGGGTGAAG 59.525 57.143 0.00 0.00 0.00 3.02
859 879 1.075698 AGAAGAGTCGGAGGGTGAAGA 59.924 52.381 0.00 0.00 0.00 2.87
860 880 1.474879 GAAGAGTCGGAGGGTGAAGAG 59.525 57.143 0.00 0.00 0.00 2.85
861 881 0.968393 AGAGTCGGAGGGTGAAGAGC 60.968 60.000 0.00 0.00 0.00 4.09
862 882 0.968393 GAGTCGGAGGGTGAAGAGCT 60.968 60.000 0.00 0.00 0.00 4.09
863 883 1.216710 GTCGGAGGGTGAAGAGCTG 59.783 63.158 0.00 0.00 0.00 4.24
864 884 2.125350 CGGAGGGTGAAGAGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
865 885 2.270527 GGAGGGTGAAGAGCTGCC 59.729 66.667 0.00 0.00 0.00 4.85
866 886 2.125350 GAGGGTGAAGAGCTGCCG 60.125 66.667 0.00 0.00 0.00 5.69
867 887 2.604686 AGGGTGAAGAGCTGCCGA 60.605 61.111 0.00 0.00 0.00 5.54
868 888 2.125350 GGGTGAAGAGCTGCCGAG 60.125 66.667 0.00 0.00 0.00 4.63
966 986 1.027255 TCTTCTCCTCGGTGCTCTCG 61.027 60.000 0.00 0.00 0.00 4.04
978 998 1.147153 GCTCTCGGGGATCTTTGGG 59.853 63.158 0.00 0.00 0.00 4.12
981 1001 1.204786 TCTCGGGGATCTTTGGGCAA 61.205 55.000 0.00 0.00 0.00 4.52
1088 1111 0.990818 ATCCTGCCCTCCCTTTCTCC 60.991 60.000 0.00 0.00 0.00 3.71
1103 1126 5.487433 CCTTTCTCCTCTTCTTCTTCTTCC 58.513 45.833 0.00 0.00 0.00 3.46
1112 1138 3.208747 TCTTCTTCTTCCTTTGGCGTT 57.791 42.857 0.00 0.00 0.00 4.84
1115 1141 3.478857 TCTTCTTCCTTTGGCGTTGTA 57.521 42.857 0.00 0.00 0.00 2.41
1138 1164 1.077169 GTTCCCCTGGGTGGATTCTTT 59.923 52.381 12.71 0.00 38.35 2.52
1160 1186 2.230660 CTGGTTCCTGGTTCTTGTTCC 58.769 52.381 0.00 0.00 0.00 3.62
1193 1219 1.359130 AGATGGGTTCTTGGGGGAAAG 59.641 52.381 0.00 0.00 0.00 2.62
1200 1226 0.479589 TCTTGGGGGAAAGGATGGGT 60.480 55.000 0.00 0.00 0.00 4.51
1206 1232 2.494627 GGGGGAAAGGATGGGTTTCTTT 60.495 50.000 0.00 0.00 34.81 2.52
1229 1255 4.034285 GGGGGAAAGATGAGTTTCTTGA 57.966 45.455 0.00 0.00 36.12 3.02
1252 1278 2.356553 TTCGTTTCGGCCCTGACG 60.357 61.111 11.86 11.86 36.89 4.35
1282 1308 3.165071 GGTTGGGGTGAATTCTTGATGT 58.835 45.455 7.05 0.00 0.00 3.06
1293 1319 7.904461 GGTGAATTCTTGATGTGTTTTTGTTTG 59.096 33.333 7.05 0.00 0.00 2.93
1294 1320 8.442384 GTGAATTCTTGATGTGTTTTTGTTTGT 58.558 29.630 7.05 0.00 0.00 2.83
1295 1321 8.655092 TGAATTCTTGATGTGTTTTTGTTTGTC 58.345 29.630 7.05 0.00 0.00 3.18
1296 1322 6.959671 TTCTTGATGTGTTTTTGTTTGTCC 57.040 33.333 0.00 0.00 0.00 4.02
1297 1323 5.415221 TCTTGATGTGTTTTTGTTTGTCCC 58.585 37.500 0.00 0.00 0.00 4.46
1298 1324 3.775202 TGATGTGTTTTTGTTTGTCCCG 58.225 40.909 0.00 0.00 0.00 5.14
1299 1325 2.656560 TGTGTTTTTGTTTGTCCCGG 57.343 45.000 0.00 0.00 0.00 5.73
1300 1326 2.168496 TGTGTTTTTGTTTGTCCCGGA 58.832 42.857 0.73 0.00 0.00 5.14
1301 1327 2.094649 TGTGTTTTTGTTTGTCCCGGAC 60.095 45.455 10.96 10.96 0.00 4.79
1311 1337 0.682852 TGTCCCGGACGATTTCTTGT 59.317 50.000 13.02 0.00 34.95 3.16
1312 1338 1.076332 GTCCCGGACGATTTCTTGTG 58.924 55.000 0.73 0.00 0.00 3.33
1320 1346 4.406943 GGACGATTTCTTGTGAAGATTGC 58.593 43.478 0.00 0.00 37.38 3.56
1349 1376 1.136305 CTTCCGATCCGTGGCTTTCTA 59.864 52.381 0.00 0.00 0.00 2.10
1372 1399 9.330063 TCTATGCGATTAATTGTTCAAGATTCT 57.670 29.630 4.60 0.00 0.00 2.40
1454 1481 2.019249 CTGATGGCGATTTGATGTGGT 58.981 47.619 0.00 0.00 0.00 4.16
1528 1558 0.476771 CTTTAGGTGGTGGTGGTGGT 59.523 55.000 0.00 0.00 0.00 4.16
1529 1559 0.183971 TTTAGGTGGTGGTGGTGGTG 59.816 55.000 0.00 0.00 0.00 4.17
1530 1560 1.710996 TTAGGTGGTGGTGGTGGTGG 61.711 60.000 0.00 0.00 0.00 4.61
1531 1561 2.918374 TAGGTGGTGGTGGTGGTGGT 62.918 60.000 0.00 0.00 0.00 4.16
1718 1748 5.124936 GGGTAAGCAACAAATCTATCCGTTT 59.875 40.000 0.00 0.00 0.00 3.60
1720 1750 4.600012 AGCAACAAATCTATCCGTTTCG 57.400 40.909 0.00 0.00 0.00 3.46
1734 1768 0.446616 GTTTCGGTGCGATTTCCTCC 59.553 55.000 0.00 0.00 35.23 4.30
1877 1911 2.767505 CAGGAGAAAGCAAAGGTACGT 58.232 47.619 0.00 0.00 0.00 3.57
1901 1935 3.883549 GCATGCCCTCCTCCCTCC 61.884 72.222 6.36 0.00 0.00 4.30
1902 1936 2.040043 CATGCCCTCCTCCCTCCT 60.040 66.667 0.00 0.00 0.00 3.69
1903 1937 2.146061 CATGCCCTCCTCCCTCCTC 61.146 68.421 0.00 0.00 0.00 3.71
1977 2011 2.594592 GTTGCTGCAGAACCCGGT 60.595 61.111 20.43 0.00 0.00 5.28
1984 2018 3.691342 CAGAACCCGGTGGCGAGA 61.691 66.667 0.00 0.00 33.59 4.04
2062 2096 1.278337 CGAGATCAGCTCCGACTCG 59.722 63.158 12.33 12.33 40.70 4.18
2181 2215 2.704342 AAGGTACGCGCGTTCACCTT 62.704 55.000 42.77 42.77 40.36 3.50
2183 2217 1.154727 GTACGCGCGTTCACCTTTG 60.155 57.895 42.10 5.23 0.00 2.77
2213 2250 4.511826 CGAACACTTTGCTTCTTAGACCTT 59.488 41.667 0.00 0.00 0.00 3.50
2214 2251 5.559035 CGAACACTTTGCTTCTTAGACCTTG 60.559 44.000 0.00 0.00 0.00 3.61
2215 2252 4.781934 ACACTTTGCTTCTTAGACCTTGT 58.218 39.130 0.00 0.00 0.00 3.16
2217 2254 5.059833 CACTTTGCTTCTTAGACCTTGTCT 58.940 41.667 1.94 1.94 45.54 3.41
2218 2255 5.049818 CACTTTGCTTCTTAGACCTTGTCTG 60.050 44.000 7.00 0.00 43.30 3.51
2219 2256 4.955811 TTGCTTCTTAGACCTTGTCTGA 57.044 40.909 7.00 0.00 43.30 3.27
2379 2431 1.505425 AGTCGCCGAGGTAAAAACAC 58.495 50.000 0.00 0.00 0.00 3.32
2386 2440 1.162698 GAGGTAAAAACACGGGCTCC 58.837 55.000 0.00 0.00 0.00 4.70
2391 2445 2.597578 AAAAACACGGGCTCCCTTAT 57.402 45.000 3.11 0.00 0.00 1.73
2396 2456 2.592861 CGGGCTCCCTTATGCAGC 60.593 66.667 3.11 0.00 0.00 5.25
2445 2510 2.202987 GTGATCTCCTGCCTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
2485 2550 1.066929 GGTGTTGTTTCCATCCATGCC 60.067 52.381 0.00 0.00 0.00 4.40
2609 2677 0.976641 AGAAGTTCGACCTGATGCCA 59.023 50.000 0.00 0.00 0.00 4.92
3112 3232 4.009675 GTGTGCTGATTGATGTTTCCCTA 58.990 43.478 0.00 0.00 0.00 3.53
3113 3233 4.641989 GTGTGCTGATTGATGTTTCCCTAT 59.358 41.667 0.00 0.00 0.00 2.57
3133 3261 5.814705 CCTATTCTTCTCTTGGATGTGTGTC 59.185 44.000 0.00 0.00 0.00 3.67
3197 3325 1.446272 GCTGCAGTACGGTCTGGTC 60.446 63.158 16.64 0.00 36.12 4.02
3337 3477 5.277825 GCTGATGTAAGCTACACTACTGAG 58.722 45.833 0.00 0.00 42.23 3.35
3365 3505 7.568349 TCTATTGTAGCCTTGAATCTGTGATT 58.432 34.615 0.00 0.00 0.00 2.57
3416 3569 2.679837 CGTGATGATTGGTTTCAGGGAG 59.320 50.000 0.00 0.00 0.00 4.30
3419 3572 0.322456 TGATTGGTTTCAGGGAGGCG 60.322 55.000 0.00 0.00 0.00 5.52
3574 3727 0.102120 CGCCTGTTTGTTGCTTTGGA 59.898 50.000 0.00 0.00 0.00 3.53
3576 3729 2.407090 GCCTGTTTGTTGCTTTGGATC 58.593 47.619 0.00 0.00 0.00 3.36
3581 3734 3.068024 TGTTTGTTGCTTTGGATCTGGAC 59.932 43.478 0.00 0.00 0.00 4.02
3625 3779 0.865111 CTGACATTTCGCCGTGTTGA 59.135 50.000 0.00 0.00 0.00 3.18
3629 3783 0.984109 CATTTCGCCGTGTTGATTGC 59.016 50.000 0.00 0.00 0.00 3.56
3661 3819 4.836125 TTGCTTTTAGAAGAGTGCAAGG 57.164 40.909 0.00 0.00 35.83 3.61
3675 3833 2.200373 GCAAGGAGGGTTTGCTAAGA 57.800 50.000 2.93 0.00 45.64 2.10
3676 3834 2.087646 GCAAGGAGGGTTTGCTAAGAG 58.912 52.381 2.93 0.00 45.64 2.85
3677 3835 2.553247 GCAAGGAGGGTTTGCTAAGAGT 60.553 50.000 2.93 0.00 45.64 3.24
3831 4001 6.768483 TGAATAATCTTTGGTGTCTCTGTCA 58.232 36.000 0.00 0.00 0.00 3.58
3880 4094 9.897744 ATGTTGTGTGAGATATTTTAACTGTTG 57.102 29.630 2.69 0.00 0.00 3.33
3881 4095 8.898761 TGTTGTGTGAGATATTTTAACTGTTGT 58.101 29.630 2.69 0.00 0.00 3.32
3882 4096 9.730420 GTTGTGTGAGATATTTTAACTGTTGTT 57.270 29.630 2.69 0.00 39.98 2.83
3883 4097 9.944663 TTGTGTGAGATATTTTAACTGTTGTTC 57.055 29.630 2.69 0.00 37.59 3.18
3884 4098 9.114952 TGTGTGAGATATTTTAACTGTTGTTCA 57.885 29.630 2.69 0.00 37.59 3.18
3885 4099 9.944663 GTGTGAGATATTTTAACTGTTGTTCAA 57.055 29.630 2.69 0.00 37.59 2.69
3905 4119 7.601705 TTCAAAATCTGAACCAGAAATTCCT 57.398 32.000 0.43 0.00 44.04 3.36
3906 4120 7.219484 TCAAAATCTGAACCAGAAATTCCTC 57.781 36.000 0.43 0.00 44.04 3.71
3907 4121 6.209391 TCAAAATCTGAACCAGAAATTCCTCC 59.791 38.462 0.43 0.00 44.04 4.30
3908 4122 5.527026 AATCTGAACCAGAAATTCCTCCT 57.473 39.130 0.43 0.00 44.04 3.69
3909 4123 6.642733 AATCTGAACCAGAAATTCCTCCTA 57.357 37.500 0.43 0.00 44.04 2.94
3910 4124 6.642733 ATCTGAACCAGAAATTCCTCCTAA 57.357 37.500 0.43 0.00 44.04 2.69
3911 4125 6.448369 TCTGAACCAGAAATTCCTCCTAAA 57.552 37.500 0.00 0.00 37.57 1.85
3912 4126 6.848069 TCTGAACCAGAAATTCCTCCTAAAA 58.152 36.000 0.00 0.00 37.57 1.52
3913 4127 7.294584 TCTGAACCAGAAATTCCTCCTAAAAA 58.705 34.615 0.00 0.00 37.57 1.94
3914 4128 7.950124 TCTGAACCAGAAATTCCTCCTAAAAAT 59.050 33.333 0.00 0.00 37.57 1.82
3915 4129 9.243105 CTGAACCAGAAATTCCTCCTAAAAATA 57.757 33.333 0.00 0.00 32.44 1.40
3916 4130 9.768215 TGAACCAGAAATTCCTCCTAAAAATAT 57.232 29.630 0.00 0.00 0.00 1.28
3918 4132 8.539117 ACCAGAAATTCCTCCTAAAAATATGG 57.461 34.615 0.00 0.00 0.00 2.74
3919 4133 8.122481 ACCAGAAATTCCTCCTAAAAATATGGT 58.878 33.333 0.00 0.00 0.00 3.55
3920 4134 8.416329 CCAGAAATTCCTCCTAAAAATATGGTG 58.584 37.037 0.00 0.00 0.00 4.17
3974 4205 5.913137 TCAAAATCTGAACCACAGTTGTT 57.087 34.783 0.00 0.00 45.86 2.83
4012 4246 8.767085 ACAATTTGCACTTCATAATTTGAACTG 58.233 29.630 0.00 0.00 39.44 3.16
4016 4250 4.082026 GCACTTCATAATTTGAACTGGCCT 60.082 41.667 3.32 0.00 39.44 5.19
4017 4251 5.567423 GCACTTCATAATTTGAACTGGCCTT 60.567 40.000 3.32 0.00 39.44 4.35
4018 4252 6.458210 CACTTCATAATTTGAACTGGCCTTT 58.542 36.000 3.32 0.00 39.44 3.11
4019 4253 6.930722 CACTTCATAATTTGAACTGGCCTTTT 59.069 34.615 3.32 0.00 39.44 2.27
4020 4254 7.442062 CACTTCATAATTTGAACTGGCCTTTTT 59.558 33.333 3.32 0.00 39.44 1.94
4021 4255 7.657354 ACTTCATAATTTGAACTGGCCTTTTTC 59.343 33.333 3.32 4.39 39.44 2.29
4022 4256 6.155827 TCATAATTTGAACTGGCCTTTTTCG 58.844 36.000 3.32 0.00 0.00 3.46
4034 4268 2.482864 CCTTTTTCGGCACTGCAATTT 58.517 42.857 2.82 0.00 0.00 1.82
4035 4269 3.648009 CCTTTTTCGGCACTGCAATTTA 58.352 40.909 2.82 0.00 0.00 1.40
4036 4270 3.428534 CCTTTTTCGGCACTGCAATTTAC 59.571 43.478 2.82 0.00 0.00 2.01
4037 4271 3.717400 TTTTCGGCACTGCAATTTACA 57.283 38.095 2.82 0.00 0.00 2.41
4039 4273 3.717400 TTCGGCACTGCAATTTACAAA 57.283 38.095 2.82 0.00 0.00 2.83
4053 4297 8.494347 TGCAATTTACAAAATCTGCACATTAAC 58.506 29.630 13.34 0.00 35.02 2.01
4072 4316 4.639135 AACTTTTTCTTCTCACAGGCAC 57.361 40.909 0.00 0.00 0.00 5.01
4073 4317 3.891049 ACTTTTTCTTCTCACAGGCACT 58.109 40.909 0.00 0.00 43.88 4.40
4074 4318 4.273318 ACTTTTTCTTCTCACAGGCACTT 58.727 39.130 0.00 0.00 34.60 3.16
4075 4319 4.706962 ACTTTTTCTTCTCACAGGCACTTT 59.293 37.500 0.00 0.00 34.60 2.66
4076 4320 5.885912 ACTTTTTCTTCTCACAGGCACTTTA 59.114 36.000 0.00 0.00 34.60 1.85
4077 4321 5.751243 TTTTCTTCTCACAGGCACTTTAC 57.249 39.130 0.00 0.00 34.60 2.01
4078 4322 4.415881 TTCTTCTCACAGGCACTTTACA 57.584 40.909 0.00 0.00 34.60 2.41
4080 4324 4.973168 TCTTCTCACAGGCACTTTACAAT 58.027 39.130 0.00 0.00 34.60 2.71
4081 4325 4.756642 TCTTCTCACAGGCACTTTACAATG 59.243 41.667 0.00 0.00 34.60 2.82
4082 4326 4.085357 TCTCACAGGCACTTTACAATGT 57.915 40.909 0.00 0.00 34.60 2.71
4083 4327 3.814842 TCTCACAGGCACTTTACAATGTG 59.185 43.478 0.00 4.15 34.60 3.21
4095 4339 8.301730 CACTTTACAATGTGCAATCAATTTCT 57.698 30.769 0.00 0.00 0.00 2.52
4096 4340 8.767085 CACTTTACAATGTGCAATCAATTTCTT 58.233 29.630 0.00 0.00 0.00 2.52
4097 4341 9.328845 ACTTTACAATGTGCAATCAATTTCTTT 57.671 25.926 0.00 0.00 0.00 2.52
4127 4391 7.458170 AGTCCTTCTGAACTTCCTCCTTATTTA 59.542 37.037 0.00 0.00 0.00 1.40
4128 4392 8.101419 GTCCTTCTGAACTTCCTCCTTATTTAA 58.899 37.037 0.00 0.00 0.00 1.52
4129 4393 8.101419 TCCTTCTGAACTTCCTCCTTATTTAAC 58.899 37.037 0.00 0.00 0.00 2.01
4130 4394 7.337184 CCTTCTGAACTTCCTCCTTATTTAACC 59.663 40.741 0.00 0.00 0.00 2.85
4131 4395 7.324388 TCTGAACTTCCTCCTTATTTAACCA 57.676 36.000 0.00 0.00 0.00 3.67
4132 4396 7.394816 TCTGAACTTCCTCCTTATTTAACCAG 58.605 38.462 0.00 0.00 0.00 4.00
4134 4398 5.780958 ACTTCCTCCTTATTTAACCAGCT 57.219 39.130 0.00 0.00 0.00 4.24
4135 4399 6.140968 ACTTCCTCCTTATTTAACCAGCTT 57.859 37.500 0.00 0.00 0.00 3.74
4136 4400 7.266905 ACTTCCTCCTTATTTAACCAGCTTA 57.733 36.000 0.00 0.00 0.00 3.09
4138 4402 6.630203 TCCTCCTTATTTAACCAGCTTACA 57.370 37.500 0.00 0.00 0.00 2.41
4140 4404 7.054124 TCCTCCTTATTTAACCAGCTTACATG 58.946 38.462 0.00 0.00 0.00 3.21
4141 4405 7.054124 CCTCCTTATTTAACCAGCTTACATGA 58.946 38.462 0.00 0.00 0.00 3.07
4142 4406 7.012421 CCTCCTTATTTAACCAGCTTACATGAC 59.988 40.741 0.00 0.00 0.00 3.06
4143 4407 7.630082 TCCTTATTTAACCAGCTTACATGACT 58.370 34.615 0.00 0.00 0.00 3.41
4144 4408 7.552687 TCCTTATTTAACCAGCTTACATGACTG 59.447 37.037 0.00 1.23 0.00 3.51
4145 4409 7.336931 CCTTATTTAACCAGCTTACATGACTGT 59.663 37.037 0.00 0.00 39.49 3.55
4146 4410 8.630054 TTATTTAACCAGCTTACATGACTGTT 57.370 30.769 0.00 2.33 36.79 3.16
4147 4411 5.940192 TTAACCAGCTTACATGACTGTTG 57.060 39.130 0.00 0.00 36.79 3.33
4151 4415 4.697352 ACCAGCTTACATGACTGTTGATTC 59.303 41.667 0.00 0.00 36.79 2.52
4154 4418 6.312487 CAGCTTACATGACTGTTGATTCTTG 58.688 40.000 0.00 0.00 36.79 3.02
4156 4420 6.712095 AGCTTACATGACTGTTGATTCTTGAA 59.288 34.615 0.00 0.00 36.79 2.69
4157 4421 6.798959 GCTTACATGACTGTTGATTCTTGAAC 59.201 38.462 0.00 0.00 36.79 3.18
4176 4440 7.395772 TCTTGAACCATATTTGCACCTTCATAA 59.604 33.333 0.00 0.00 0.00 1.90
4178 4442 8.076910 TGAACCATATTTGCACCTTCATAATT 57.923 30.769 0.00 0.00 0.00 1.40
4181 4445 7.274447 ACCATATTTGCACCTTCATAATTTGG 58.726 34.615 10.93 10.93 35.08 3.28
4183 4447 7.654520 CCATATTTGCACCTTCATAATTTGGAG 59.345 37.037 8.12 0.00 32.47 3.86
4185 4449 2.760092 TGCACCTTCATAATTTGGAGCC 59.240 45.455 0.00 0.00 35.77 4.70
4187 4451 3.181483 GCACCTTCATAATTTGGAGCCTG 60.181 47.826 0.00 0.00 31.60 4.85
4188 4452 3.026694 ACCTTCATAATTTGGAGCCTGC 58.973 45.455 0.00 0.00 28.30 4.85
4190 4454 3.317430 CCTTCATAATTTGGAGCCTGCTC 59.683 47.826 10.68 10.68 42.04 4.26
4191 4455 3.650281 TCATAATTTGGAGCCTGCTCA 57.350 42.857 19.90 4.59 44.40 4.26
4192 4456 4.174704 TCATAATTTGGAGCCTGCTCAT 57.825 40.909 19.90 3.32 44.40 2.90
4194 4458 5.693961 TCATAATTTGGAGCCTGCTCATAA 58.306 37.500 19.90 13.05 44.40 1.90
4196 4460 4.725790 AATTTGGAGCCTGCTCATAAAC 57.274 40.909 19.90 3.75 44.40 2.01
4197 4461 2.877097 TTGGAGCCTGCTCATAAACA 57.123 45.000 19.90 6.25 44.40 2.83
4198 4462 2.113860 TGGAGCCTGCTCATAAACAC 57.886 50.000 19.90 2.40 44.40 3.32
4199 4463 1.630369 TGGAGCCTGCTCATAAACACT 59.370 47.619 19.90 0.00 44.40 3.55
4201 4465 1.399791 GAGCCTGCTCATAAACACTGC 59.600 52.381 14.07 0.00 42.31 4.40
4202 4466 1.004044 AGCCTGCTCATAAACACTGCT 59.996 47.619 0.00 0.00 0.00 4.24
4203 4467 1.399791 GCCTGCTCATAAACACTGCTC 59.600 52.381 0.00 0.00 0.00 4.26
4204 4468 2.703416 CCTGCTCATAAACACTGCTCA 58.297 47.619 0.00 0.00 0.00 4.26
4205 4469 3.276857 CCTGCTCATAAACACTGCTCAT 58.723 45.455 0.00 0.00 0.00 2.90
4206 4470 4.445453 CCTGCTCATAAACACTGCTCATA 58.555 43.478 0.00 0.00 0.00 2.15
4209 4473 6.127925 CCTGCTCATAAACACTGCTCATAAAA 60.128 38.462 0.00 0.00 0.00 1.52
4210 4474 6.845302 TGCTCATAAACACTGCTCATAAAAG 58.155 36.000 0.00 0.00 0.00 2.27
4211 4475 6.654582 TGCTCATAAACACTGCTCATAAAAGA 59.345 34.615 0.00 0.00 0.00 2.52
4212 4476 6.963805 GCTCATAAACACTGCTCATAAAAGAC 59.036 38.462 0.00 0.00 0.00 3.01
4213 4477 7.148340 GCTCATAAACACTGCTCATAAAAGACT 60.148 37.037 0.00 0.00 0.00 3.24
4214 4478 8.032952 TCATAAACACTGCTCATAAAAGACTG 57.967 34.615 0.00 0.00 0.00 3.51
4215 4479 7.661437 TCATAAACACTGCTCATAAAAGACTGT 59.339 33.333 0.00 0.00 0.00 3.55
4216 4480 6.699575 AAACACTGCTCATAAAAGACTGTT 57.300 33.333 0.00 0.00 0.00 3.16
4217 4481 5.679734 ACACTGCTCATAAAAGACTGTTG 57.320 39.130 0.00 0.00 0.00 3.33
4218 4482 5.368145 ACACTGCTCATAAAAGACTGTTGA 58.632 37.500 0.00 0.00 0.00 3.18
4219 4483 6.000219 ACACTGCTCATAAAAGACTGTTGAT 59.000 36.000 0.00 0.00 0.00 2.57
4220 4484 6.488006 ACACTGCTCATAAAAGACTGTTGATT 59.512 34.615 0.00 0.00 0.00 2.57
4221 4485 7.020010 CACTGCTCATAAAAGACTGTTGATTC 58.980 38.462 0.00 0.00 0.00 2.52
4222 4486 6.712095 ACTGCTCATAAAAGACTGTTGATTCA 59.288 34.615 0.00 0.00 0.00 2.57
4223 4487 7.392673 ACTGCTCATAAAAGACTGTTGATTCAT 59.607 33.333 0.00 0.00 0.00 2.57
4224 4488 7.532571 TGCTCATAAAAGACTGTTGATTCATG 58.467 34.615 0.00 0.00 0.00 3.07
4225 4489 7.175467 TGCTCATAAAAGACTGTTGATTCATGT 59.825 33.333 0.00 0.00 0.00 3.21
4226 4490 7.695618 GCTCATAAAAGACTGTTGATTCATGTC 59.304 37.037 0.00 6.78 0.00 3.06
4227 4491 8.853077 TCATAAAAGACTGTTGATTCATGTCT 57.147 30.769 9.99 9.99 39.35 3.41
4228 4492 9.288576 TCATAAAAGACTGTTGATTCATGTCTT 57.711 29.630 17.14 17.14 46.04 3.01
4231 4495 8.908786 AAAAGACTGTTGATTCATGTCTTAGA 57.091 30.769 20.40 0.00 44.16 2.10
4232 4496 8.545229 AAAGACTGTTGATTCATGTCTTAGAG 57.455 34.615 20.40 4.38 44.16 2.43
4233 4497 6.638610 AGACTGTTGATTCATGTCTTAGAGG 58.361 40.000 9.99 0.00 34.78 3.69
4234 4498 6.212388 AGACTGTTGATTCATGTCTTAGAGGT 59.788 38.462 9.99 0.00 34.78 3.85
4235 4499 6.169094 ACTGTTGATTCATGTCTTAGAGGTG 58.831 40.000 0.00 0.00 0.00 4.00
4236 4500 5.491070 TGTTGATTCATGTCTTAGAGGTGG 58.509 41.667 0.00 0.00 0.00 4.61
4237 4501 5.013079 TGTTGATTCATGTCTTAGAGGTGGT 59.987 40.000 0.00 0.00 0.00 4.16
4238 4502 5.762179 TGATTCATGTCTTAGAGGTGGTT 57.238 39.130 0.00 0.00 0.00 3.67
4239 4503 6.126863 TGATTCATGTCTTAGAGGTGGTTT 57.873 37.500 0.00 0.00 0.00 3.27
4240 4504 5.939883 TGATTCATGTCTTAGAGGTGGTTTG 59.060 40.000 0.00 0.00 0.00 2.93
4241 4505 3.674997 TCATGTCTTAGAGGTGGTTTGC 58.325 45.455 0.00 0.00 0.00 3.68
4242 4506 2.163818 TGTCTTAGAGGTGGTTTGCG 57.836 50.000 0.00 0.00 0.00 4.85
4243 4507 0.796927 GTCTTAGAGGTGGTTTGCGC 59.203 55.000 0.00 0.00 0.00 6.09
4244 4508 0.394938 TCTTAGAGGTGGTTTGCGCA 59.605 50.000 5.66 5.66 0.00 6.09
4245 4509 1.003118 TCTTAGAGGTGGTTTGCGCAT 59.997 47.619 12.75 0.00 0.00 4.73
4246 4510 1.812571 CTTAGAGGTGGTTTGCGCATT 59.187 47.619 12.75 0.00 0.00 3.56
4247 4511 2.772077 TAGAGGTGGTTTGCGCATTA 57.228 45.000 12.75 0.00 0.00 1.90
4248 4512 1.904287 AGAGGTGGTTTGCGCATTAA 58.096 45.000 12.75 0.00 0.00 1.40
4249 4513 2.235016 AGAGGTGGTTTGCGCATTAAA 58.765 42.857 12.75 0.00 0.00 1.52
4250 4514 2.625790 AGAGGTGGTTTGCGCATTAAAA 59.374 40.909 12.75 0.00 0.00 1.52
4251 4515 3.258123 AGAGGTGGTTTGCGCATTAAAAT 59.742 39.130 12.75 0.00 0.00 1.82
4252 4516 3.993736 GAGGTGGTTTGCGCATTAAAATT 59.006 39.130 12.75 0.00 0.00 1.82
4253 4517 4.384940 AGGTGGTTTGCGCATTAAAATTT 58.615 34.783 12.75 0.00 0.00 1.82
4254 4518 4.819088 AGGTGGTTTGCGCATTAAAATTTT 59.181 33.333 12.75 8.75 0.00 1.82
4255 4519 5.049749 AGGTGGTTTGCGCATTAAAATTTTC 60.050 36.000 12.75 0.00 0.00 2.29
4256 4520 5.049749 GGTGGTTTGCGCATTAAAATTTTCT 60.050 36.000 12.75 0.00 0.00 2.52
4257 4521 6.426327 GTGGTTTGCGCATTAAAATTTTCTT 58.574 32.000 12.75 0.00 0.00 2.52
4258 4522 7.307455 GGTGGTTTGCGCATTAAAATTTTCTTA 60.307 33.333 12.75 0.00 0.00 2.10
4259 4523 8.227119 GTGGTTTGCGCATTAAAATTTTCTTAT 58.773 29.630 12.75 0.00 0.00 1.73
4260 4524 8.439286 TGGTTTGCGCATTAAAATTTTCTTATC 58.561 29.630 12.75 0.00 0.00 1.75
4261 4525 8.439286 GGTTTGCGCATTAAAATTTTCTTATCA 58.561 29.630 12.75 0.00 0.00 2.15
4262 4526 9.971744 GTTTGCGCATTAAAATTTTCTTATCAT 57.028 25.926 12.75 0.00 0.00 2.45
4280 4544 9.162764 TCTTATCATAAAAACTTCACAGTAGCC 57.837 33.333 0.00 0.00 30.68 3.93
4281 4545 8.856153 TTATCATAAAAACTTCACAGTAGCCA 57.144 30.769 0.00 0.00 30.68 4.75
4282 4546 6.554334 TCATAAAAACTTCACAGTAGCCAC 57.446 37.500 0.00 0.00 30.68 5.01
4283 4547 6.296026 TCATAAAAACTTCACAGTAGCCACT 58.704 36.000 0.00 0.00 34.42 4.00
4284 4548 6.770785 TCATAAAAACTTCACAGTAGCCACTT 59.229 34.615 0.00 0.00 30.46 3.16
4285 4549 5.914898 AAAAACTTCACAGTAGCCACTTT 57.085 34.783 0.00 0.00 30.46 2.66
4286 4550 4.900635 AAACTTCACAGTAGCCACTTTG 57.099 40.909 0.00 0.00 34.37 2.77
4287 4551 2.222027 ACTTCACAGTAGCCACTTTGC 58.778 47.619 0.00 0.00 33.32 3.68
4288 4552 2.221169 CTTCACAGTAGCCACTTTGCA 58.779 47.619 0.00 0.00 33.32 4.08
4289 4553 1.882912 TCACAGTAGCCACTTTGCAG 58.117 50.000 0.00 0.00 33.32 4.41
4290 4554 1.140852 TCACAGTAGCCACTTTGCAGT 59.859 47.619 0.00 0.00 33.32 4.40
4310 4574 4.092821 CAGTGCAATGAAATCAAATGGCTG 59.907 41.667 8.85 0.00 0.00 4.85
4332 4596 6.349944 GCTGATTGAGTTCAGGACAATGAATT 60.350 38.462 0.00 0.00 42.78 2.17
4335 4599 6.564709 TTGAGTTCAGGACAATGAATTGAG 57.435 37.500 9.94 0.00 41.05 3.02
4336 4600 5.868454 TGAGTTCAGGACAATGAATTGAGA 58.132 37.500 9.94 0.42 41.05 3.27
4337 4601 6.479006 TGAGTTCAGGACAATGAATTGAGAT 58.521 36.000 9.94 0.00 41.05 2.75
4344 4608 6.971184 CAGGACAATGAATTGAGATTACAAGC 59.029 38.462 9.94 0.00 40.14 4.01
4345 4609 6.888632 AGGACAATGAATTGAGATTACAAGCT 59.111 34.615 9.94 0.00 40.14 3.74
4346 4610 8.049117 AGGACAATGAATTGAGATTACAAGCTA 58.951 33.333 9.94 0.00 40.14 3.32
4347 4611 8.677300 GGACAATGAATTGAGATTACAAGCTAA 58.323 33.333 9.94 0.00 40.14 3.09
4350 4614 9.512435 CAATGAATTGAGATTACAAGCTAAAGG 57.488 33.333 0.00 0.00 40.14 3.11
4351 4615 8.814038 ATGAATTGAGATTACAAGCTAAAGGT 57.186 30.769 0.00 0.00 33.22 3.50
4352 4616 8.044060 TGAATTGAGATTACAAGCTAAAGGTG 57.956 34.615 0.00 0.00 33.22 4.00
4373 4637 3.008157 TGCAATGAAACCAAATGGCTGAT 59.992 39.130 0.00 0.00 39.32 2.90
4378 4642 3.896888 TGAAACCAAATGGCTGATTGAGT 59.103 39.130 0.00 0.00 39.32 3.41
4379 4643 4.344679 TGAAACCAAATGGCTGATTGAGTT 59.655 37.500 0.00 0.00 39.32 3.01
4401 4665 8.186709 AGTTTTCAGGACAATGAATTGAGATT 57.813 30.769 9.94 0.00 38.90 2.40
4402 4666 9.300681 AGTTTTCAGGACAATGAATTGAGATTA 57.699 29.630 9.94 0.00 38.90 1.75
4405 4669 8.455903 TTCAGGACAATGAATTGAGATTATCC 57.544 34.615 9.94 5.26 40.14 2.59
4406 4670 7.000472 TCAGGACAATGAATTGAGATTATCCC 59.000 38.462 9.94 0.00 40.14 3.85
4407 4671 6.208204 CAGGACAATGAATTGAGATTATCCCC 59.792 42.308 9.94 0.00 40.14 4.81
4410 4674 5.835280 ACAATGAATTGAGATTATCCCCCAC 59.165 40.000 9.94 0.00 40.14 4.61
4411 4675 5.668135 ATGAATTGAGATTATCCCCCACA 57.332 39.130 0.00 0.00 0.00 4.17
4412 4676 5.464588 TGAATTGAGATTATCCCCCACAA 57.535 39.130 0.00 0.00 0.00 3.33
4413 4677 5.448654 TGAATTGAGATTATCCCCCACAAG 58.551 41.667 0.00 0.00 0.00 3.16
4414 4678 3.297134 TTGAGATTATCCCCCACAAGC 57.703 47.619 0.00 0.00 0.00 4.01
4415 4679 2.492025 TGAGATTATCCCCCACAAGCT 58.508 47.619 0.00 0.00 0.00 3.74
4416 4680 3.664320 TGAGATTATCCCCCACAAGCTA 58.336 45.455 0.00 0.00 0.00 3.32
4417 4681 4.044308 TGAGATTATCCCCCACAAGCTAA 58.956 43.478 0.00 0.00 0.00 3.09
4420 4684 4.478686 AGATTATCCCCCACAAGCTAAAGT 59.521 41.667 0.00 0.00 0.00 2.66
4421 4685 2.514458 ATCCCCCACAAGCTAAAGTG 57.486 50.000 6.84 6.84 35.56 3.16
4423 4687 1.777878 TCCCCCACAAGCTAAAGTGAA 59.222 47.619 13.60 0.00 37.97 3.18
4424 4688 2.175931 TCCCCCACAAGCTAAAGTGAAA 59.824 45.455 13.60 0.00 37.97 2.69
4425 4689 2.296190 CCCCCACAAGCTAAAGTGAAAC 59.704 50.000 13.60 0.00 37.97 2.78
4426 4690 2.296190 CCCCACAAGCTAAAGTGAAACC 59.704 50.000 13.60 0.00 37.80 3.27
4428 4692 3.383185 CCCACAAGCTAAAGTGAAACCAA 59.617 43.478 13.60 0.00 37.80 3.67
4429 4693 4.142049 CCCACAAGCTAAAGTGAAACCAAA 60.142 41.667 13.60 0.00 37.80 3.28
4431 4695 5.463061 CCACAAGCTAAAGTGAAACCAAATG 59.537 40.000 13.60 0.00 37.80 2.32
4432 4696 5.463061 CACAAGCTAAAGTGAAACCAAATGG 59.537 40.000 7.84 0.00 37.80 3.16
4434 4698 3.897505 AGCTAAAGTGAAACCAAATGGCT 59.102 39.130 0.00 0.00 37.80 4.75
4435 4699 3.989817 GCTAAAGTGAAACCAAATGGCTG 59.010 43.478 0.00 0.00 37.80 4.85
4438 4702 4.961438 AAGTGAAACCAAATGGCTGATT 57.039 36.364 0.00 0.00 37.80 2.57
4439 4703 4.261578 AGTGAAACCAAATGGCTGATTG 57.738 40.909 0.00 0.00 37.80 2.67
4440 4704 3.642848 AGTGAAACCAAATGGCTGATTGT 59.357 39.130 0.00 0.00 37.80 2.71
4441 4705 3.742369 GTGAAACCAAATGGCTGATTGTG 59.258 43.478 0.00 0.00 39.32 3.33
4442 4706 3.387374 TGAAACCAAATGGCTGATTGTGT 59.613 39.130 0.00 0.00 39.32 3.72
4443 4707 4.141756 TGAAACCAAATGGCTGATTGTGTT 60.142 37.500 0.00 0.00 39.32 3.32
4444 4708 3.665745 ACCAAATGGCTGATTGTGTTC 57.334 42.857 0.00 0.00 39.32 3.18
4446 4710 3.387374 ACCAAATGGCTGATTGTGTTCAA 59.613 39.130 0.00 0.00 39.32 2.69
4447 4711 3.991773 CCAAATGGCTGATTGTGTTCAAG 59.008 43.478 0.00 0.00 36.97 3.02
4448 4712 4.262121 CCAAATGGCTGATTGTGTTCAAGA 60.262 41.667 0.00 0.00 36.97 3.02
4450 4714 4.713824 ATGGCTGATTGTGTTCAAGATG 57.286 40.909 0.00 0.00 36.97 2.90
4451 4715 2.821378 TGGCTGATTGTGTTCAAGATGG 59.179 45.455 0.00 0.00 36.97 3.51
4452 4716 2.821969 GGCTGATTGTGTTCAAGATGGT 59.178 45.455 0.00 0.00 36.97 3.55
4453 4717 3.256631 GGCTGATTGTGTTCAAGATGGTT 59.743 43.478 0.00 0.00 36.97 3.67
4454 4718 4.232221 GCTGATTGTGTTCAAGATGGTTG 58.768 43.478 0.00 0.00 36.97 3.77
4457 4721 6.653526 TGATTGTGTTCAAGATGGTTGAAT 57.346 33.333 3.65 0.00 40.12 2.57
4459 4723 7.819644 TGATTGTGTTCAAGATGGTTGAATAG 58.180 34.615 3.65 0.00 40.12 1.73
4460 4724 7.665145 TGATTGTGTTCAAGATGGTTGAATAGA 59.335 33.333 3.65 0.00 40.12 1.98
4461 4725 7.439157 TTGTGTTCAAGATGGTTGAATAGAG 57.561 36.000 3.65 0.00 40.12 2.43
4462 4726 5.412594 TGTGTTCAAGATGGTTGAATAGAGC 59.587 40.000 3.65 0.00 40.12 4.09
4466 4730 6.688637 TCAAGATGGTTGAATAGAGCAATG 57.311 37.500 0.00 0.00 0.00 2.82
4467 4731 6.417258 TCAAGATGGTTGAATAGAGCAATGA 58.583 36.000 0.00 0.00 0.00 2.57
4468 4732 6.885918 TCAAGATGGTTGAATAGAGCAATGAA 59.114 34.615 0.00 0.00 0.00 2.57
4469 4733 7.394077 TCAAGATGGTTGAATAGAGCAATGAAA 59.606 33.333 0.00 0.00 0.00 2.69
4470 4734 7.893124 AGATGGTTGAATAGAGCAATGAAAT 57.107 32.000 0.00 0.00 0.00 2.17
4471 4735 7.938715 AGATGGTTGAATAGAGCAATGAAATC 58.061 34.615 0.00 0.00 0.00 2.17
4472 4736 7.558807 AGATGGTTGAATAGAGCAATGAAATCA 59.441 33.333 0.00 0.00 0.00 2.57
4473 4737 7.465353 TGGTTGAATAGAGCAATGAAATCAA 57.535 32.000 0.00 0.00 0.00 2.57
4474 4738 8.070034 TGGTTGAATAGAGCAATGAAATCAAT 57.930 30.769 0.00 0.00 0.00 2.57
4475 4739 7.977293 TGGTTGAATAGAGCAATGAAATCAATG 59.023 33.333 0.00 0.00 0.00 2.82
4476 4740 7.437267 GGTTGAATAGAGCAATGAAATCAATGG 59.563 37.037 1.02 0.00 0.00 3.16
4477 4741 7.649533 TGAATAGAGCAATGAAATCAATGGT 57.350 32.000 3.01 3.01 39.84 3.55
4478 4742 8.070034 TGAATAGAGCAATGAAATCAATGGTT 57.930 30.769 4.81 0.00 37.58 3.67
4479 4743 7.977293 TGAATAGAGCAATGAAATCAATGGTTG 59.023 33.333 4.81 0.00 37.58 3.77
4522 4786 4.583907 TCAGTTTTGGAACATTGCTGATCA 59.416 37.500 0.00 0.00 39.30 2.92
4530 4794 4.217118 GGAACATTGCTGATCAAGTTCAGT 59.783 41.667 18.21 4.59 44.10 3.41
4537 4801 3.000724 GCTGATCAAGTTCAGTACATCGC 59.999 47.826 0.00 0.00 44.10 4.58
4541 4805 1.317611 CAAGTTCAGTACATCGCGACG 59.682 52.381 12.93 5.44 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.344309 CTTTTTGAGCATTGATTTTGTGTTTTT 57.656 25.926 0.00 0.00 0.00 1.94
10 11 8.728833 TCTTTTTGAGCATTGATTTTGTGTTTT 58.271 25.926 0.00 0.00 0.00 2.43
11 12 8.266392 TCTTTTTGAGCATTGATTTTGTGTTT 57.734 26.923 0.00 0.00 0.00 2.83
12 13 7.846644 TCTTTTTGAGCATTGATTTTGTGTT 57.153 28.000 0.00 0.00 0.00 3.32
13 14 7.929785 AGATCTTTTTGAGCATTGATTTTGTGT 59.070 29.630 0.00 0.00 32.67 3.72
14 15 8.221100 CAGATCTTTTTGAGCATTGATTTTGTG 58.779 33.333 0.00 0.00 32.67 3.33
15 16 8.145767 TCAGATCTTTTTGAGCATTGATTTTGT 58.854 29.630 0.00 0.00 32.67 2.83
16 17 8.528917 TCAGATCTTTTTGAGCATTGATTTTG 57.471 30.769 0.00 0.00 32.67 2.44
17 18 9.720769 ATTCAGATCTTTTTGAGCATTGATTTT 57.279 25.926 0.00 0.00 32.67 1.82
18 19 9.720769 AATTCAGATCTTTTTGAGCATTGATTT 57.279 25.926 0.00 0.00 32.67 2.17
19 20 9.151471 CAATTCAGATCTTTTTGAGCATTGATT 57.849 29.630 0.00 0.00 32.67 2.57
20 21 8.311836 ACAATTCAGATCTTTTTGAGCATTGAT 58.688 29.630 13.34 0.00 31.11 2.57
21 22 7.597369 CACAATTCAGATCTTTTTGAGCATTGA 59.403 33.333 13.34 0.00 31.11 2.57
22 23 7.597369 TCACAATTCAGATCTTTTTGAGCATTG 59.403 33.333 13.34 9.43 32.08 2.82
23 24 7.597743 GTCACAATTCAGATCTTTTTGAGCATT 59.402 33.333 13.34 0.00 32.67 3.56
24 25 7.088905 GTCACAATTCAGATCTTTTTGAGCAT 58.911 34.615 13.34 0.00 32.67 3.79
25 26 6.441274 GTCACAATTCAGATCTTTTTGAGCA 58.559 36.000 13.34 0.00 32.67 4.26
26 27 5.860716 GGTCACAATTCAGATCTTTTTGAGC 59.139 40.000 13.34 10.52 0.00 4.26
27 28 6.208204 AGGGTCACAATTCAGATCTTTTTGAG 59.792 38.462 13.34 7.65 0.00 3.02
28 29 6.070656 AGGGTCACAATTCAGATCTTTTTGA 58.929 36.000 13.34 3.94 0.00 2.69
29 30 6.336842 AGGGTCACAATTCAGATCTTTTTG 57.663 37.500 0.00 0.00 0.00 2.44
30 31 6.983906 AAGGGTCACAATTCAGATCTTTTT 57.016 33.333 0.00 0.00 0.00 1.94
31 32 8.655935 AATAAGGGTCACAATTCAGATCTTTT 57.344 30.769 0.00 0.00 0.00 2.27
32 33 7.890127 TGAATAAGGGTCACAATTCAGATCTTT 59.110 33.333 0.00 0.00 34.34 2.52
33 34 7.405292 TGAATAAGGGTCACAATTCAGATCTT 58.595 34.615 0.00 0.00 34.34 2.40
34 35 6.962182 TGAATAAGGGTCACAATTCAGATCT 58.038 36.000 0.00 0.00 34.34 2.75
35 36 7.630242 TTGAATAAGGGTCACAATTCAGATC 57.370 36.000 3.85 0.00 38.98 2.75
36 37 7.671398 ACTTTGAATAAGGGTCACAATTCAGAT 59.329 33.333 3.85 0.00 38.98 2.90
37 38 7.004086 ACTTTGAATAAGGGTCACAATTCAGA 58.996 34.615 3.85 0.24 38.98 3.27
38 39 7.219484 ACTTTGAATAAGGGTCACAATTCAG 57.781 36.000 3.85 0.00 38.98 3.02
39 40 7.595819 AACTTTGAATAAGGGTCACAATTCA 57.404 32.000 0.09 0.09 36.75 2.57
77 78 9.683069 CGTACATATAAAAGTTATAACCTCCGT 57.317 33.333 12.05 2.52 0.00 4.69
78 79 9.132521 CCGTACATATAAAAGTTATAACCTCCG 57.867 37.037 12.05 0.31 0.00 4.63
79 80 9.987272 ACCGTACATATAAAAGTTATAACCTCC 57.013 33.333 12.05 0.00 0.00 4.30
98 99 0.321021 AACCCGCAATGTACCGTACA 59.679 50.000 13.69 13.69 43.80 2.90
99 100 1.441738 AAACCCGCAATGTACCGTAC 58.558 50.000 1.40 1.40 0.00 3.67
100 101 2.495270 TCTAAACCCGCAATGTACCGTA 59.505 45.455 0.00 0.00 0.00 4.02
101 102 1.275856 TCTAAACCCGCAATGTACCGT 59.724 47.619 0.00 0.00 0.00 4.83
102 103 2.012937 TCTAAACCCGCAATGTACCG 57.987 50.000 0.00 0.00 0.00 4.02
103 104 3.311596 GTCATCTAAACCCGCAATGTACC 59.688 47.826 0.00 0.00 0.00 3.34
104 105 3.936453 TGTCATCTAAACCCGCAATGTAC 59.064 43.478 0.00 0.00 0.00 2.90
105 106 3.936453 GTGTCATCTAAACCCGCAATGTA 59.064 43.478 0.00 0.00 0.00 2.29
106 107 2.747446 GTGTCATCTAAACCCGCAATGT 59.253 45.455 0.00 0.00 0.00 2.71
107 108 2.746904 TGTGTCATCTAAACCCGCAATG 59.253 45.455 0.00 0.00 0.00 2.82
108 109 3.066291 TGTGTCATCTAAACCCGCAAT 57.934 42.857 0.00 0.00 0.00 3.56
109 110 2.552599 TGTGTCATCTAAACCCGCAA 57.447 45.000 0.00 0.00 0.00 4.85
110 111 2.422597 CTTGTGTCATCTAAACCCGCA 58.577 47.619 0.00 0.00 0.00 5.69
111 112 1.130561 GCTTGTGTCATCTAAACCCGC 59.869 52.381 0.00 0.00 0.00 6.13
112 113 2.699954 AGCTTGTGTCATCTAAACCCG 58.300 47.619 0.00 0.00 0.00 5.28
113 114 3.191371 CCAAGCTTGTGTCATCTAAACCC 59.809 47.826 24.35 0.00 0.00 4.11
114 115 3.821033 ACCAAGCTTGTGTCATCTAAACC 59.179 43.478 24.35 0.00 0.00 3.27
115 116 6.371389 GTTACCAAGCTTGTGTCATCTAAAC 58.629 40.000 24.35 15.89 0.00 2.01
116 117 5.178623 CGTTACCAAGCTTGTGTCATCTAAA 59.821 40.000 24.35 9.41 0.00 1.85
117 118 4.688879 CGTTACCAAGCTTGTGTCATCTAA 59.311 41.667 24.35 10.01 0.00 2.10
118 119 4.242475 CGTTACCAAGCTTGTGTCATCTA 58.758 43.478 24.35 4.84 0.00 1.98
119 120 3.067106 CGTTACCAAGCTTGTGTCATCT 58.933 45.455 24.35 3.53 0.00 2.90
120 121 2.412847 GCGTTACCAAGCTTGTGTCATC 60.413 50.000 24.35 13.39 0.00 2.92
121 122 1.535462 GCGTTACCAAGCTTGTGTCAT 59.465 47.619 24.35 7.53 0.00 3.06
122 123 0.941542 GCGTTACCAAGCTTGTGTCA 59.058 50.000 24.35 11.01 0.00 3.58
123 124 0.237498 GGCGTTACCAAGCTTGTGTC 59.763 55.000 24.35 10.98 38.86 3.67
124 125 1.503818 CGGCGTTACCAAGCTTGTGT 61.504 55.000 24.35 21.77 39.03 3.72
125 126 1.206578 CGGCGTTACCAAGCTTGTG 59.793 57.895 24.35 17.55 39.03 3.33
126 127 2.613506 GCGGCGTTACCAAGCTTGT 61.614 57.895 24.35 14.80 39.03 3.16
127 128 2.175811 GCGGCGTTACCAAGCTTG 59.824 61.111 19.93 19.93 39.03 4.01
128 129 3.053896 GGCGGCGTTACCAAGCTT 61.054 61.111 9.37 0.00 39.03 3.74
131 132 1.952102 TAGAGGGCGGCGTTACCAAG 61.952 60.000 9.37 0.00 39.03 3.61
132 133 1.332144 ATAGAGGGCGGCGTTACCAA 61.332 55.000 9.37 0.00 39.03 3.67
133 134 0.467844 TATAGAGGGCGGCGTTACCA 60.468 55.000 9.37 0.00 39.03 3.25
134 135 0.243095 CTATAGAGGGCGGCGTTACC 59.757 60.000 9.37 9.11 0.00 2.85
135 136 1.242076 TCTATAGAGGGCGGCGTTAC 58.758 55.000 9.37 0.00 0.00 2.50
136 137 1.985473 TTCTATAGAGGGCGGCGTTA 58.015 50.000 9.37 1.08 0.00 3.18
137 138 1.068741 CTTTCTATAGAGGGCGGCGTT 59.931 52.381 9.37 0.00 0.00 4.84
138 139 0.674534 CTTTCTATAGAGGGCGGCGT 59.325 55.000 9.37 2.92 0.00 5.68
139 140 0.959553 TCTTTCTATAGAGGGCGGCG 59.040 55.000 0.51 0.51 0.00 6.46
140 141 1.964933 ACTCTTTCTATAGAGGGCGGC 59.035 52.381 0.00 0.00 44.80 6.53
141 142 5.786264 TTAACTCTTTCTATAGAGGGCGG 57.214 43.478 2.02 0.00 44.80 6.13
142 143 6.570692 TGTTTAACTCTTTCTATAGAGGGCG 58.429 40.000 2.02 0.00 44.80 6.13
143 144 8.788325 TTTGTTTAACTCTTTCTATAGAGGGC 57.212 34.615 2.02 0.00 44.80 5.19
183 184 7.251704 AGCGAAAAATGTGAGGTTCTATATG 57.748 36.000 0.00 0.00 0.00 1.78
184 185 7.865706 AAGCGAAAAATGTGAGGTTCTATAT 57.134 32.000 0.00 0.00 0.00 0.86
191 192 4.394729 TCCTAAAGCGAAAAATGTGAGGT 58.605 39.130 0.00 0.00 0.00 3.85
199 200 8.895737 TCTTTAACTCTTTCCTAAAGCGAAAAA 58.104 29.630 0.00 0.00 38.39 1.94
228 229 1.543802 TCCGAAAGCGAAAAATGCCAT 59.456 42.857 0.00 0.00 40.82 4.40
231 232 3.305110 TCTTTCCGAAAGCGAAAAATGC 58.695 40.909 14.99 0.00 40.82 3.56
269 277 6.149129 GTGGAAACATTCAACCTCTTCTTT 57.851 37.500 0.00 0.00 46.14 2.52
293 307 0.107654 GTAAGGCCAGGTACCAGCTG 60.108 60.000 22.04 6.78 42.96 4.24
294 308 1.272554 GGTAAGGCCAGGTACCAGCT 61.273 60.000 22.04 9.60 39.73 4.24
295 309 1.223763 GGTAAGGCCAGGTACCAGC 59.776 63.158 15.94 16.28 39.73 4.85
311 325 2.697147 ATTGCGTGCTCTGGGTTGGT 62.697 55.000 0.00 0.00 0.00 3.67
312 326 1.973281 ATTGCGTGCTCTGGGTTGG 60.973 57.895 0.00 0.00 0.00 3.77
356 373 6.910995 TGACGTGTGGTTTTCTTTCTTTTTA 58.089 32.000 0.00 0.00 0.00 1.52
357 374 5.774630 TGACGTGTGGTTTTCTTTCTTTTT 58.225 33.333 0.00 0.00 0.00 1.94
358 375 5.379732 TGACGTGTGGTTTTCTTTCTTTT 57.620 34.783 0.00 0.00 0.00 2.27
359 376 5.379732 TTGACGTGTGGTTTTCTTTCTTT 57.620 34.783 0.00 0.00 0.00 2.52
384 401 2.295253 ACGACGGATTCACAAGATCC 57.705 50.000 0.00 0.00 0.00 3.36
410 427 2.622942 TGGAGAGATTTTGTGTTGTGCC 59.377 45.455 0.00 0.00 0.00 5.01
411 428 3.988379 TGGAGAGATTTTGTGTTGTGC 57.012 42.857 0.00 0.00 0.00 4.57
503 522 4.348684 TCCAAGCTGGAAAGGGGA 57.651 55.556 2.78 0.00 45.00 4.81
695 715 0.810016 GATATAGGACGAGGACGGGC 59.190 60.000 0.00 0.00 44.46 6.13
776 796 2.967076 CGTGGGCGGATCAATCGG 60.967 66.667 0.00 0.00 0.00 4.18
826 846 1.077644 TCTTCTCGCCTCGCCTAGT 60.078 57.895 0.00 0.00 0.00 2.57
849 869 2.125350 CGGCAGCTCTTCACCCTC 60.125 66.667 0.00 0.00 0.00 4.30
850 870 2.604686 TCGGCAGCTCTTCACCCT 60.605 61.111 0.00 0.00 0.00 4.34
851 871 2.125350 CTCGGCAGCTCTTCACCC 60.125 66.667 0.00 0.00 0.00 4.61
852 872 0.739112 CTTCTCGGCAGCTCTTCACC 60.739 60.000 0.00 0.00 0.00 4.02
853 873 0.739112 CCTTCTCGGCAGCTCTTCAC 60.739 60.000 0.00 0.00 0.00 3.18
854 874 1.593787 CCTTCTCGGCAGCTCTTCA 59.406 57.895 0.00 0.00 0.00 3.02
855 875 1.153469 CCCTTCTCGGCAGCTCTTC 60.153 63.158 0.00 0.00 0.00 2.87
856 876 1.893919 GACCCTTCTCGGCAGCTCTT 61.894 60.000 0.00 0.00 0.00 2.85
857 877 2.284258 ACCCTTCTCGGCAGCTCT 60.284 61.111 0.00 0.00 0.00 4.09
858 878 2.185608 GACCCTTCTCGGCAGCTC 59.814 66.667 0.00 0.00 0.00 4.09
859 879 3.764466 CGACCCTTCTCGGCAGCT 61.764 66.667 0.00 0.00 0.00 4.24
864 884 3.122250 CTACGGCGACCCTTCTCGG 62.122 68.421 16.62 0.00 34.06 4.63
865 885 2.049475 CTCTACGGCGACCCTTCTCG 62.049 65.000 16.62 0.00 36.70 4.04
866 886 1.728672 CTCTACGGCGACCCTTCTC 59.271 63.158 16.62 0.00 0.00 2.87
867 887 2.416432 GCTCTACGGCGACCCTTCT 61.416 63.158 16.62 0.00 0.00 2.85
868 888 2.104530 GCTCTACGGCGACCCTTC 59.895 66.667 16.62 0.00 0.00 3.46
966 986 2.060383 GCCTTGCCCAAAGATCCCC 61.060 63.158 0.00 0.00 38.24 4.81
1088 1111 3.434984 CGCCAAAGGAAGAAGAAGAAGAG 59.565 47.826 0.00 0.00 0.00 2.85
1103 1126 0.236449 GGAACCGTACAACGCCAAAG 59.764 55.000 0.00 0.00 40.91 2.77
1138 1164 0.550914 ACAAGAACCAGGAACCAGCA 59.449 50.000 0.00 0.00 0.00 4.41
1160 1186 0.462047 CCCATCTTTTCCCGAGACCG 60.462 60.000 0.00 0.00 0.00 4.79
1193 1219 2.990977 CCCCCAAAGAAACCCATCC 58.009 57.895 0.00 0.00 0.00 3.51
1213 1239 5.053978 ACACCCTCAAGAAACTCATCTTT 57.946 39.130 0.00 0.00 37.56 2.52
1229 1255 2.281276 GGCCGAAACGAACACCCT 60.281 61.111 0.00 0.00 0.00 4.34
1252 1278 3.580319 ACCCCAACCAGACAGGGC 61.580 66.667 0.00 0.00 43.96 5.19
1282 1308 1.132643 CGTCCGGGACAAACAAAAACA 59.867 47.619 25.80 0.00 32.09 2.83
1293 1319 1.076332 CACAAGAAATCGTCCGGGAC 58.924 55.000 17.38 17.38 0.00 4.46
1294 1320 0.970640 TCACAAGAAATCGTCCGGGA 59.029 50.000 0.00 0.00 0.00 5.14
1295 1321 1.732259 CTTCACAAGAAATCGTCCGGG 59.268 52.381 0.00 0.00 32.35 5.73
1296 1322 2.683968 TCTTCACAAGAAATCGTCCGG 58.316 47.619 0.00 0.00 33.83 5.14
1297 1323 4.641954 CAATCTTCACAAGAAATCGTCCG 58.358 43.478 0.00 0.00 41.63 4.79
1298 1324 4.406943 GCAATCTTCACAAGAAATCGTCC 58.593 43.478 0.00 0.00 41.63 4.79
1299 1325 4.084507 CGCAATCTTCACAAGAAATCGTC 58.915 43.478 0.00 0.00 41.63 4.20
1300 1326 3.667960 GCGCAATCTTCACAAGAAATCGT 60.668 43.478 0.30 0.00 41.63 3.73
1301 1327 2.842485 GCGCAATCTTCACAAGAAATCG 59.158 45.455 0.30 0.00 41.63 3.34
1372 1399 6.712998 TCAATTCAGACCAAAAACGAGGATTA 59.287 34.615 0.00 0.00 0.00 1.75
1417 1444 0.910513 CAGAGTCGAATCTTGCGTCG 59.089 55.000 13.61 0.00 38.62 5.12
1454 1481 3.609853 CGAGGAGGTGGATCAAATCAAA 58.390 45.455 0.00 0.00 0.00 2.69
1609 1639 2.031919 AAGTTGCCGATGTCGCCA 59.968 55.556 0.00 0.00 38.18 5.69
1718 1748 0.970937 AGAGGAGGAAATCGCACCGA 60.971 55.000 0.00 0.00 41.13 4.69
1720 1750 1.208293 AGAAGAGGAGGAAATCGCACC 59.792 52.381 0.00 0.00 0.00 5.01
1723 1753 3.535280 AGAAGAAGAGGAGGAAATCGC 57.465 47.619 0.00 0.00 0.00 4.58
1734 1768 5.163353 GGGAGTTCCATAGGAAGAAGAAGAG 60.163 48.000 0.00 0.00 42.88 2.85
2062 2096 1.080705 CTCCGACTTGGTCACGTCC 60.081 63.158 2.68 0.00 39.52 4.79
2181 2215 1.668751 GCAAAGTGTTCGACTGTCCAA 59.331 47.619 1.55 0.00 34.02 3.53
2183 2217 1.583054 AGCAAAGTGTTCGACTGTCC 58.417 50.000 1.55 0.00 34.02 4.02
2213 2250 4.100653 GGTGGATCAGAATCAGATCAGACA 59.899 45.833 15.82 4.07 42.84 3.41
2214 2251 4.100653 TGGTGGATCAGAATCAGATCAGAC 59.899 45.833 15.82 11.46 42.84 3.51
2215 2252 4.292643 TGGTGGATCAGAATCAGATCAGA 58.707 43.478 15.82 0.00 42.84 3.27
2217 2254 5.374071 CAATGGTGGATCAGAATCAGATCA 58.626 41.667 15.82 1.96 42.84 2.92
2218 2255 4.215827 GCAATGGTGGATCAGAATCAGATC 59.784 45.833 7.05 7.05 40.86 2.75
2219 2256 4.142790 GCAATGGTGGATCAGAATCAGAT 58.857 43.478 0.00 0.00 33.21 2.90
2386 2440 4.927978 AGTACTCTACTGCTGCATAAGG 57.072 45.455 1.31 0.00 37.69 2.69
2391 2445 3.942115 CACTCTAGTACTCTACTGCTGCA 59.058 47.826 0.00 0.88 39.81 4.41
2396 2456 5.881777 TTGCACACTCTAGTACTCTACTG 57.118 43.478 0.00 0.00 39.81 2.74
2422 2482 0.917533 AGGCAGGAGATCACAATGCT 59.082 50.000 15.54 0.00 37.08 3.79
2445 2510 3.454082 ACCTTCATCAGATTCAGAGACCC 59.546 47.826 0.00 0.00 0.00 4.46
2485 2550 0.861837 GCACTCGTTCTGTCAACAGG 59.138 55.000 10.13 0.00 43.91 4.00
2512 2580 1.343478 CCTGGGAGTCCATGTAGTCCT 60.343 57.143 12.30 0.00 43.11 3.85
2609 2677 1.018148 CCGTGAGATACAGCGACTCT 58.982 55.000 0.00 0.00 0.00 3.24
2705 2773 1.148157 CGTACTTGCAGGCGATGAGG 61.148 60.000 0.00 0.00 0.00 3.86
3002 3074 2.356665 TCTTCTGATCGGAGGAGGAG 57.643 55.000 12.11 3.24 0.00 3.69
3057 3146 2.017782 CTGAAGAATCTGCATGCTGCT 58.982 47.619 20.33 7.23 45.31 4.24
3112 3232 5.221803 ACAGACACACATCCAAGAGAAGAAT 60.222 40.000 0.00 0.00 0.00 2.40
3113 3233 4.101585 ACAGACACACATCCAAGAGAAGAA 59.898 41.667 0.00 0.00 0.00 2.52
3133 3261 1.446907 GGTGTTCTCCATCTGCACAG 58.553 55.000 0.00 0.00 0.00 3.66
3197 3325 1.077212 CATGGAGGGCTTGGACTGG 60.077 63.158 0.00 0.00 0.00 4.00
3260 3388 2.203182 TCGGTCCACAGAGGGGTT 59.797 61.111 0.00 0.00 38.24 4.11
3328 3456 5.825679 AGGCTACAATAGAGACTCAGTAGTG 59.174 44.000 17.80 10.17 35.56 2.74
3337 3477 6.478344 CACAGATTCAAGGCTACAATAGAGAC 59.522 42.308 0.00 0.00 0.00 3.36
3416 3569 4.115199 ACCAGGATCTTGGCCGCC 62.115 66.667 23.05 1.04 42.18 6.13
3539 3692 2.488355 CGGGCAGCTCATTTGCAG 59.512 61.111 0.00 0.00 43.28 4.41
3574 3727 0.904865 TCGCACTCCCAAGTCCAGAT 60.905 55.000 0.00 0.00 31.71 2.90
3576 3729 0.742281 CATCGCACTCCCAAGTCCAG 60.742 60.000 0.00 0.00 31.71 3.86
3581 3734 0.745845 CCTTCCATCGCACTCCCAAG 60.746 60.000 0.00 0.00 0.00 3.61
3625 3779 7.816640 TCTAAAAGCAAGAAACGAATAGCAAT 58.183 30.769 0.00 0.00 0.00 3.56
3629 3783 8.713271 ACTCTTCTAAAAGCAAGAAACGAATAG 58.287 33.333 0.00 0.00 32.77 1.73
3661 3819 4.338400 ACAACAAACTCTTAGCAAACCCTC 59.662 41.667 0.00 0.00 0.00 4.30
3670 3828 4.201871 TGCGACCAAACAACAAACTCTTAG 60.202 41.667 0.00 0.00 0.00 2.18
3671 3829 3.690139 TGCGACCAAACAACAAACTCTTA 59.310 39.130 0.00 0.00 0.00 2.10
3672 3830 2.490115 TGCGACCAAACAACAAACTCTT 59.510 40.909 0.00 0.00 0.00 2.85
3674 3832 2.553079 TGCGACCAAACAACAAACTC 57.447 45.000 0.00 0.00 0.00 3.01
3675 3833 2.230266 ACTTGCGACCAAACAACAAACT 59.770 40.909 0.00 0.00 0.00 2.66
3676 3834 2.596862 GACTTGCGACCAAACAACAAAC 59.403 45.455 0.00 0.00 0.00 2.93
3677 3835 2.229062 TGACTTGCGACCAAACAACAAA 59.771 40.909 0.00 0.00 0.00 2.83
3857 4027 9.944663 GAACAACAGTTAAAATATCTCACACAA 57.055 29.630 0.00 0.00 0.00 3.33
3881 4095 7.255942 GGAGGAATTTCTGGTTCAGATTTTGAA 60.256 37.037 0.00 0.00 43.40 2.69
3882 4096 6.209391 GGAGGAATTTCTGGTTCAGATTTTGA 59.791 38.462 0.00 0.00 40.39 2.69
3883 4097 6.210185 AGGAGGAATTTCTGGTTCAGATTTTG 59.790 38.462 0.00 0.00 40.39 2.44
3884 4098 6.318112 AGGAGGAATTTCTGGTTCAGATTTT 58.682 36.000 0.00 0.00 40.39 1.82
3885 4099 5.896963 AGGAGGAATTTCTGGTTCAGATTT 58.103 37.500 0.00 0.00 40.39 2.17
3886 4100 5.527026 AGGAGGAATTTCTGGTTCAGATT 57.473 39.130 0.00 0.00 40.39 2.40
3887 4101 6.642733 TTAGGAGGAATTTCTGGTTCAGAT 57.357 37.500 0.00 0.00 40.39 2.90
3888 4102 6.448369 TTTAGGAGGAATTTCTGGTTCAGA 57.552 37.500 0.00 0.00 38.87 3.27
3889 4103 7.524717 TTTTTAGGAGGAATTTCTGGTTCAG 57.475 36.000 0.00 0.00 0.00 3.02
3890 4104 9.768215 ATATTTTTAGGAGGAATTTCTGGTTCA 57.232 29.630 0.00 0.00 0.00 3.18
3892 4106 8.981659 CCATATTTTTAGGAGGAATTTCTGGTT 58.018 33.333 0.00 0.00 0.00 3.67
3893 4107 8.122481 ACCATATTTTTAGGAGGAATTTCTGGT 58.878 33.333 0.00 0.00 0.00 4.00
3894 4108 8.416329 CACCATATTTTTAGGAGGAATTTCTGG 58.584 37.037 0.00 0.00 0.00 3.86
3895 4109 8.971073 ACACCATATTTTTAGGAGGAATTTCTG 58.029 33.333 0.00 0.00 0.00 3.02
3899 4113 9.990868 AGTTACACCATATTTTTAGGAGGAATT 57.009 29.630 0.00 0.00 0.00 2.17
3900 4114 9.408648 CAGTTACACCATATTTTTAGGAGGAAT 57.591 33.333 0.00 0.00 0.00 3.01
3901 4115 8.387813 ACAGTTACACCATATTTTTAGGAGGAA 58.612 33.333 0.00 0.00 0.00 3.36
3902 4116 7.924541 ACAGTTACACCATATTTTTAGGAGGA 58.075 34.615 0.00 0.00 0.00 3.71
3903 4117 8.575649 AACAGTTACACCATATTTTTAGGAGG 57.424 34.615 0.00 0.00 0.00 4.30
4016 4250 4.046938 TGTAAATTGCAGTGCCGAAAAA 57.953 36.364 13.72 0.00 0.00 1.94
4017 4251 3.717400 TGTAAATTGCAGTGCCGAAAA 57.283 38.095 13.72 0.00 0.00 2.29
4018 4252 3.717400 TTGTAAATTGCAGTGCCGAAA 57.283 38.095 13.72 0.00 0.00 3.46
4019 4253 3.717400 TTTGTAAATTGCAGTGCCGAA 57.283 38.095 13.72 0.76 0.00 4.30
4020 4254 3.717400 TTTTGTAAATTGCAGTGCCGA 57.283 38.095 13.72 1.09 0.00 5.54
4021 4255 4.090354 CAGATTTTGTAAATTGCAGTGCCG 59.910 41.667 13.72 0.00 0.00 5.69
4022 4256 4.143052 GCAGATTTTGTAAATTGCAGTGCC 60.143 41.667 13.72 0.00 31.07 5.01
4035 4269 8.947055 AGAAAAAGTTAATGTGCAGATTTTGT 57.053 26.923 14.96 0.00 0.00 2.83
4036 4270 9.853921 GAAGAAAAAGTTAATGTGCAGATTTTG 57.146 29.630 14.96 0.00 0.00 2.44
4037 4271 9.822185 AGAAGAAAAAGTTAATGTGCAGATTTT 57.178 25.926 14.96 2.33 0.00 1.82
4039 4273 8.632679 TGAGAAGAAAAAGTTAATGTGCAGATT 58.367 29.630 14.16 14.16 0.00 2.40
4053 4297 4.907879 AAGTGCCTGTGAGAAGAAAAAG 57.092 40.909 0.00 0.00 0.00 2.27
4096 4340 6.101296 AGGAGGAAGTTCAGAAGGACTAAAAA 59.899 38.462 5.01 0.00 0.00 1.94
4097 4341 5.607171 AGGAGGAAGTTCAGAAGGACTAAAA 59.393 40.000 5.01 0.00 0.00 1.52
4098 4342 5.155905 AGGAGGAAGTTCAGAAGGACTAAA 58.844 41.667 5.01 0.00 0.00 1.85
4099 4343 4.753186 AGGAGGAAGTTCAGAAGGACTAA 58.247 43.478 5.01 0.00 0.00 2.24
4100 4344 4.405756 AGGAGGAAGTTCAGAAGGACTA 57.594 45.455 5.01 0.00 0.00 2.59
4101 4345 3.268034 AGGAGGAAGTTCAGAAGGACT 57.732 47.619 5.01 0.00 0.00 3.85
4113 4377 7.110155 TGTAAGCTGGTTAAATAAGGAGGAAG 58.890 38.462 0.20 0.00 0.00 3.46
4127 4391 4.085357 TCAACAGTCATGTAAGCTGGTT 57.915 40.909 0.00 0.00 39.29 3.67
4128 4392 3.769739 TCAACAGTCATGTAAGCTGGT 57.230 42.857 0.00 4.86 39.29 4.00
4129 4393 4.940046 AGAATCAACAGTCATGTAAGCTGG 59.060 41.667 0.00 0.00 39.29 4.85
4130 4394 6.148315 TCAAGAATCAACAGTCATGTAAGCTG 59.852 38.462 0.00 0.54 39.29 4.24
4131 4395 6.233434 TCAAGAATCAACAGTCATGTAAGCT 58.767 36.000 0.00 0.00 39.29 3.74
4132 4396 6.486253 TCAAGAATCAACAGTCATGTAAGC 57.514 37.500 0.00 0.00 39.29 3.09
4134 4398 6.770303 TGGTTCAAGAATCAACAGTCATGTAA 59.230 34.615 0.00 0.00 39.29 2.41
4135 4399 6.295249 TGGTTCAAGAATCAACAGTCATGTA 58.705 36.000 0.00 0.00 39.29 2.29
4136 4400 5.132502 TGGTTCAAGAATCAACAGTCATGT 58.867 37.500 0.00 0.00 43.15 3.21
4138 4402 8.585471 AATATGGTTCAAGAATCAACAGTCAT 57.415 30.769 0.00 0.00 34.74 3.06
4140 4404 7.274250 GCAAATATGGTTCAAGAATCAACAGTC 59.726 37.037 0.00 0.00 34.74 3.51
4141 4405 7.092716 GCAAATATGGTTCAAGAATCAACAGT 58.907 34.615 0.00 0.00 34.74 3.55
4142 4406 7.062605 GTGCAAATATGGTTCAAGAATCAACAG 59.937 37.037 0.00 0.00 34.74 3.16
4143 4407 6.867816 GTGCAAATATGGTTCAAGAATCAACA 59.132 34.615 0.00 0.00 34.74 3.33
4144 4408 6.311200 GGTGCAAATATGGTTCAAGAATCAAC 59.689 38.462 0.00 0.00 34.74 3.18
4145 4409 6.211184 AGGTGCAAATATGGTTCAAGAATCAA 59.789 34.615 0.00 0.00 34.74 2.57
4146 4410 5.716228 AGGTGCAAATATGGTTCAAGAATCA 59.284 36.000 0.00 0.00 35.67 2.57
4147 4411 6.212888 AGGTGCAAATATGGTTCAAGAATC 57.787 37.500 0.00 0.00 0.00 2.52
4151 4415 5.389859 TGAAGGTGCAAATATGGTTCAAG 57.610 39.130 0.00 0.00 0.00 3.02
4154 4418 8.819974 CAAATTATGAAGGTGCAAATATGGTTC 58.180 33.333 0.00 0.00 0.00 3.62
4156 4420 7.125507 TCCAAATTATGAAGGTGCAAATATGGT 59.874 33.333 0.00 0.00 0.00 3.55
4157 4421 7.499292 TCCAAATTATGAAGGTGCAAATATGG 58.501 34.615 0.00 0.00 0.00 2.74
4176 4440 3.445096 GTGTTTATGAGCAGGCTCCAAAT 59.555 43.478 17.92 8.10 42.09 2.32
4178 4442 2.040278 AGTGTTTATGAGCAGGCTCCAA 59.960 45.455 17.92 9.58 42.09 3.53
4181 4445 1.399791 GCAGTGTTTATGAGCAGGCTC 59.600 52.381 14.20 14.20 43.01 4.70
4183 4447 1.399791 GAGCAGTGTTTATGAGCAGGC 59.600 52.381 0.00 0.00 0.00 4.85
4185 4449 6.426980 TTTATGAGCAGTGTTTATGAGCAG 57.573 37.500 0.00 0.00 0.00 4.24
4187 4451 6.963805 GTCTTTTATGAGCAGTGTTTATGAGC 59.036 38.462 0.00 0.00 0.00 4.26
4188 4452 8.173775 CAGTCTTTTATGAGCAGTGTTTATGAG 58.826 37.037 0.00 0.00 0.00 2.90
4190 4454 7.810658 ACAGTCTTTTATGAGCAGTGTTTATG 58.189 34.615 0.00 0.00 0.00 1.90
4191 4455 7.986085 ACAGTCTTTTATGAGCAGTGTTTAT 57.014 32.000 0.00 0.00 0.00 1.40
4192 4456 7.497579 TCAACAGTCTTTTATGAGCAGTGTTTA 59.502 33.333 0.00 0.00 0.00 2.01
4194 4458 5.822519 TCAACAGTCTTTTATGAGCAGTGTT 59.177 36.000 0.00 0.00 0.00 3.32
4196 4460 5.929697 TCAACAGTCTTTTATGAGCAGTG 57.070 39.130 0.00 0.00 0.00 3.66
4197 4461 6.712095 TGAATCAACAGTCTTTTATGAGCAGT 59.288 34.615 0.00 0.00 0.00 4.40
4198 4462 7.137490 TGAATCAACAGTCTTTTATGAGCAG 57.863 36.000 0.00 0.00 0.00 4.24
4199 4463 7.175467 ACATGAATCAACAGTCTTTTATGAGCA 59.825 33.333 0.00 0.00 0.00 4.26
4201 4465 8.944029 AGACATGAATCAACAGTCTTTTATGAG 58.056 33.333 0.00 0.00 36.21 2.90
4202 4466 8.853077 AGACATGAATCAACAGTCTTTTATGA 57.147 30.769 0.00 0.00 36.21 2.15
4205 4469 9.996554 TCTAAGACATGAATCAACAGTCTTTTA 57.003 29.630 23.73 14.75 44.54 1.52
4206 4470 8.908786 TCTAAGACATGAATCAACAGTCTTTT 57.091 30.769 23.73 11.27 44.54 2.27
4209 4473 6.212388 ACCTCTAAGACATGAATCAACAGTCT 59.788 38.462 0.00 9.53 40.99 3.24
4210 4474 6.312426 CACCTCTAAGACATGAATCAACAGTC 59.688 42.308 0.00 5.95 0.00 3.51
4211 4475 6.169094 CACCTCTAAGACATGAATCAACAGT 58.831 40.000 0.00 0.00 0.00 3.55
4212 4476 5.583854 CCACCTCTAAGACATGAATCAACAG 59.416 44.000 0.00 0.00 0.00 3.16
4213 4477 5.013079 ACCACCTCTAAGACATGAATCAACA 59.987 40.000 0.00 0.00 0.00 3.33
4214 4478 5.491982 ACCACCTCTAAGACATGAATCAAC 58.508 41.667 0.00 0.00 0.00 3.18
4215 4479 5.762179 ACCACCTCTAAGACATGAATCAA 57.238 39.130 0.00 0.00 0.00 2.57
4216 4480 5.762179 AACCACCTCTAAGACATGAATCA 57.238 39.130 0.00 0.00 0.00 2.57
4217 4481 5.163713 GCAAACCACCTCTAAGACATGAATC 60.164 44.000 0.00 0.00 0.00 2.52
4218 4482 4.702131 GCAAACCACCTCTAAGACATGAAT 59.298 41.667 0.00 0.00 0.00 2.57
4219 4483 4.072131 GCAAACCACCTCTAAGACATGAA 58.928 43.478 0.00 0.00 0.00 2.57
4220 4484 3.674997 GCAAACCACCTCTAAGACATGA 58.325 45.455 0.00 0.00 0.00 3.07
4221 4485 2.416547 CGCAAACCACCTCTAAGACATG 59.583 50.000 0.00 0.00 0.00 3.21
4222 4486 2.699954 CGCAAACCACCTCTAAGACAT 58.300 47.619 0.00 0.00 0.00 3.06
4223 4487 1.876416 GCGCAAACCACCTCTAAGACA 60.876 52.381 0.30 0.00 0.00 3.41
4224 4488 0.796927 GCGCAAACCACCTCTAAGAC 59.203 55.000 0.30 0.00 0.00 3.01
4225 4489 0.394938 TGCGCAAACCACCTCTAAGA 59.605 50.000 8.16 0.00 0.00 2.10
4226 4490 1.453155 ATGCGCAAACCACCTCTAAG 58.547 50.000 17.11 0.00 0.00 2.18
4227 4491 1.904287 AATGCGCAAACCACCTCTAA 58.096 45.000 17.11 0.00 0.00 2.10
4228 4492 2.772077 TAATGCGCAAACCACCTCTA 57.228 45.000 17.11 0.00 0.00 2.43
4229 4493 1.904287 TTAATGCGCAAACCACCTCT 58.096 45.000 17.11 0.00 0.00 3.69
4230 4494 2.715737 TTTAATGCGCAAACCACCTC 57.284 45.000 17.11 0.00 0.00 3.85
4231 4495 3.676291 ATTTTAATGCGCAAACCACCT 57.324 38.095 17.11 0.00 0.00 4.00
4232 4496 4.740741 AAATTTTAATGCGCAAACCACC 57.259 36.364 17.11 0.00 0.00 4.61
4233 4497 5.984627 AGAAAATTTTAATGCGCAAACCAC 58.015 33.333 17.11 0.00 0.00 4.16
4234 4498 6.610741 AAGAAAATTTTAATGCGCAAACCA 57.389 29.167 17.11 0.00 0.00 3.67
4235 4499 8.439286 TGATAAGAAAATTTTAATGCGCAAACC 58.561 29.630 17.11 0.00 0.00 3.27
4236 4500 9.971744 ATGATAAGAAAATTTTAATGCGCAAAC 57.028 25.926 17.11 0.00 0.00 2.93
4254 4518 9.162764 GGCTACTGTGAAGTTTTTATGATAAGA 57.837 33.333 0.00 0.00 0.00 2.10
4255 4519 8.946085 TGGCTACTGTGAAGTTTTTATGATAAG 58.054 33.333 0.00 0.00 0.00 1.73
4256 4520 8.726988 GTGGCTACTGTGAAGTTTTTATGATAA 58.273 33.333 0.00 0.00 0.00 1.75
4257 4521 8.100791 AGTGGCTACTGTGAAGTTTTTATGATA 58.899 33.333 0.13 0.00 35.34 2.15
4258 4522 6.942576 AGTGGCTACTGTGAAGTTTTTATGAT 59.057 34.615 0.13 0.00 35.34 2.45
4259 4523 6.296026 AGTGGCTACTGTGAAGTTTTTATGA 58.704 36.000 0.13 0.00 35.34 2.15
4260 4524 6.560253 AGTGGCTACTGTGAAGTTTTTATG 57.440 37.500 0.13 0.00 35.34 1.90
4261 4525 7.425606 CAAAGTGGCTACTGTGAAGTTTTTAT 58.574 34.615 15.02 0.00 43.61 1.40
4262 4526 6.679392 GCAAAGTGGCTACTGTGAAGTTTTTA 60.679 38.462 23.52 0.00 43.61 1.52
4263 4527 5.650543 CAAAGTGGCTACTGTGAAGTTTTT 58.349 37.500 15.02 0.00 43.61 1.94
4264 4528 4.440112 GCAAAGTGGCTACTGTGAAGTTTT 60.440 41.667 23.52 0.00 43.61 2.43
4265 4529 3.066760 GCAAAGTGGCTACTGTGAAGTTT 59.933 43.478 23.52 0.00 43.61 2.66
4266 4530 2.618709 GCAAAGTGGCTACTGTGAAGTT 59.381 45.455 23.52 0.46 43.61 2.66
4267 4531 2.222027 GCAAAGTGGCTACTGTGAAGT 58.778 47.619 23.52 0.00 43.61 3.01
4268 4532 2.221169 TGCAAAGTGGCTACTGTGAAG 58.779 47.619 23.52 4.19 43.61 3.02
4269 4533 2.221169 CTGCAAAGTGGCTACTGTGAA 58.779 47.619 23.52 12.81 43.61 3.18
4270 4534 1.140852 ACTGCAAAGTGGCTACTGTGA 59.859 47.619 23.52 8.21 43.61 3.58
4271 4535 1.265095 CACTGCAAAGTGGCTACTGTG 59.735 52.381 15.76 15.76 43.73 3.66
4272 4536 1.597742 CACTGCAAAGTGGCTACTGT 58.402 50.000 2.40 0.00 37.19 3.55
4273 4537 0.239347 GCACTGCAAAGTGGCTACTG 59.761 55.000 2.40 0.00 39.97 2.74
4274 4538 0.179020 TGCACTGCAAAGTGGCTACT 60.179 50.000 0.00 0.00 39.97 2.57
4275 4539 0.667993 TTGCACTGCAAAGTGGCTAC 59.332 50.000 14.21 0.00 45.96 3.58
4276 4540 3.108292 TTGCACTGCAAAGTGGCTA 57.892 47.368 14.21 0.00 45.96 3.93
4277 4541 3.938048 TTGCACTGCAAAGTGGCT 58.062 50.000 14.21 0.00 45.96 4.75
4285 4549 3.997681 CCATTTGATTTCATTGCACTGCA 59.002 39.130 0.00 0.00 36.47 4.41
4286 4550 3.181514 GCCATTTGATTTCATTGCACTGC 60.182 43.478 0.00 0.00 0.00 4.40
4287 4551 4.092821 CAGCCATTTGATTTCATTGCACTG 59.907 41.667 0.00 0.00 0.00 3.66
4288 4552 4.020928 TCAGCCATTTGATTTCATTGCACT 60.021 37.500 0.00 0.00 0.00 4.40
4289 4553 4.247258 TCAGCCATTTGATTTCATTGCAC 58.753 39.130 0.00 0.00 0.00 4.57
4290 4554 4.538746 TCAGCCATTTGATTTCATTGCA 57.461 36.364 0.00 0.00 0.00 4.08
4291 4555 5.583061 TCAATCAGCCATTTGATTTCATTGC 59.417 36.000 0.00 0.00 43.41 3.56
4292 4556 6.816640 ACTCAATCAGCCATTTGATTTCATTG 59.183 34.615 0.00 0.00 43.41 2.82
4300 4564 3.760151 CCTGAACTCAATCAGCCATTTGA 59.240 43.478 0.00 0.00 44.43 2.69
4310 4574 7.120285 TCTCAATTCATTGTCCTGAACTCAATC 59.880 37.037 0.00 0.00 37.93 2.67
4332 4596 4.905429 TGCACCTTTAGCTTGTAATCTCA 58.095 39.130 0.00 0.00 0.00 3.27
4335 4599 6.194796 TCATTGCACCTTTAGCTTGTAATC 57.805 37.500 0.00 0.00 0.00 1.75
4336 4600 6.588719 TTCATTGCACCTTTAGCTTGTAAT 57.411 33.333 0.00 0.00 0.00 1.89
4337 4601 6.212955 GTTTCATTGCACCTTTAGCTTGTAA 58.787 36.000 0.00 0.00 0.00 2.41
4344 4608 5.409214 CCATTTGGTTTCATTGCACCTTTAG 59.591 40.000 0.00 0.00 33.76 1.85
4345 4609 5.303971 CCATTTGGTTTCATTGCACCTTTA 58.696 37.500 0.00 0.00 33.76 1.85
4346 4610 4.136051 CCATTTGGTTTCATTGCACCTTT 58.864 39.130 0.00 0.00 33.76 3.11
4347 4611 3.742385 CCATTTGGTTTCATTGCACCTT 58.258 40.909 0.00 0.00 33.76 3.50
4348 4612 2.550639 GCCATTTGGTTTCATTGCACCT 60.551 45.455 0.00 0.00 37.57 4.00
4349 4613 1.805943 GCCATTTGGTTTCATTGCACC 59.194 47.619 0.00 0.00 37.57 5.01
4350 4614 2.481185 CAGCCATTTGGTTTCATTGCAC 59.519 45.455 0.00 0.00 37.57 4.57
4351 4615 2.367894 TCAGCCATTTGGTTTCATTGCA 59.632 40.909 0.00 0.00 37.57 4.08
4352 4616 3.042871 TCAGCCATTTGGTTTCATTGC 57.957 42.857 0.00 0.00 37.57 3.56
4373 4637 7.285172 TCTCAATTCATTGTCCTGAAAACTCAA 59.715 33.333 0.00 0.00 38.55 3.02
4379 4643 8.906867 GGATAATCTCAATTCATTGTCCTGAAA 58.093 33.333 8.67 0.00 38.55 2.69
4401 4665 3.186283 TCACTTTAGCTTGTGGGGGATA 58.814 45.455 12.20 0.00 35.15 2.59
4402 4666 1.992557 TCACTTTAGCTTGTGGGGGAT 59.007 47.619 12.20 0.00 35.15 3.85
4404 4668 2.286365 TTCACTTTAGCTTGTGGGGG 57.714 50.000 12.20 0.00 35.15 5.40
4405 4669 2.296190 GGTTTCACTTTAGCTTGTGGGG 59.704 50.000 12.20 0.00 35.15 4.96
4406 4670 2.955660 TGGTTTCACTTTAGCTTGTGGG 59.044 45.455 12.20 0.00 35.15 4.61
4407 4671 4.647424 TTGGTTTCACTTTAGCTTGTGG 57.353 40.909 12.20 0.00 35.15 4.17
4410 4674 4.448732 GCCATTTGGTTTCACTTTAGCTTG 59.551 41.667 0.00 0.00 37.57 4.01
4411 4675 4.344968 AGCCATTTGGTTTCACTTTAGCTT 59.655 37.500 0.00 0.00 37.57 3.74
4412 4676 3.897505 AGCCATTTGGTTTCACTTTAGCT 59.102 39.130 0.00 0.00 37.57 3.32
4413 4677 3.989817 CAGCCATTTGGTTTCACTTTAGC 59.010 43.478 0.00 0.00 37.57 3.09
4414 4678 5.452078 TCAGCCATTTGGTTTCACTTTAG 57.548 39.130 0.00 0.00 37.57 1.85
4415 4679 6.183360 ACAATCAGCCATTTGGTTTCACTTTA 60.183 34.615 0.00 0.00 37.57 1.85
4416 4680 4.961438 ATCAGCCATTTGGTTTCACTTT 57.039 36.364 0.00 0.00 37.57 2.66
4417 4681 4.101430 ACAATCAGCCATTTGGTTTCACTT 59.899 37.500 0.00 0.00 37.57 3.16
4420 4684 3.387374 ACACAATCAGCCATTTGGTTTCA 59.613 39.130 0.00 0.00 37.57 2.69
4421 4685 3.993920 ACACAATCAGCCATTTGGTTTC 58.006 40.909 0.00 0.00 37.57 2.78
4423 4687 3.387374 TGAACACAATCAGCCATTTGGTT 59.613 39.130 0.00 0.00 37.57 3.67
4424 4688 2.964464 TGAACACAATCAGCCATTTGGT 59.036 40.909 0.00 0.00 37.57 3.67
4425 4689 3.663995 TGAACACAATCAGCCATTTGG 57.336 42.857 0.00 0.00 38.53 3.28
4426 4690 4.873817 TCTTGAACACAATCAGCCATTTG 58.126 39.130 0.00 0.00 0.00 2.32
4428 4692 4.081862 CCATCTTGAACACAATCAGCCATT 60.082 41.667 0.00 0.00 0.00 3.16
4429 4693 3.446161 CCATCTTGAACACAATCAGCCAT 59.554 43.478 0.00 0.00 0.00 4.40
4431 4695 2.821969 ACCATCTTGAACACAATCAGCC 59.178 45.455 0.00 0.00 0.00 4.85
4432 4696 4.022935 TCAACCATCTTGAACACAATCAGC 60.023 41.667 0.00 0.00 0.00 4.26
4434 4698 6.653526 ATTCAACCATCTTGAACACAATCA 57.346 33.333 0.00 0.00 40.70 2.57
4435 4699 8.044060 TCTATTCAACCATCTTGAACACAATC 57.956 34.615 0.00 0.00 40.70 2.67
4438 4702 5.412594 GCTCTATTCAACCATCTTGAACACA 59.587 40.000 0.00 0.00 40.70 3.72
4439 4703 5.412594 TGCTCTATTCAACCATCTTGAACAC 59.587 40.000 0.00 0.00 40.70 3.32
4440 4704 5.559770 TGCTCTATTCAACCATCTTGAACA 58.440 37.500 0.00 0.00 40.70 3.18
4441 4705 6.500684 TTGCTCTATTCAACCATCTTGAAC 57.499 37.500 0.00 0.00 40.70 3.18
4442 4706 6.885918 TCATTGCTCTATTCAACCATCTTGAA 59.114 34.615 0.00 0.00 41.91 2.69
4443 4707 6.417258 TCATTGCTCTATTCAACCATCTTGA 58.583 36.000 0.00 0.00 0.00 3.02
4444 4708 6.688637 TCATTGCTCTATTCAACCATCTTG 57.311 37.500 0.00 0.00 0.00 3.02
4446 4710 7.558807 TGATTTCATTGCTCTATTCAACCATCT 59.441 33.333 0.00 0.00 0.00 2.90
4447 4711 7.709947 TGATTTCATTGCTCTATTCAACCATC 58.290 34.615 0.00 0.00 0.00 3.51
4448 4712 7.649533 TGATTTCATTGCTCTATTCAACCAT 57.350 32.000 0.00 0.00 0.00 3.55
4450 4714 7.437267 CCATTGATTTCATTGCTCTATTCAACC 59.563 37.037 0.00 0.00 0.00 3.77
4451 4715 7.977853 ACCATTGATTTCATTGCTCTATTCAAC 59.022 33.333 0.00 0.00 0.00 3.18
4452 4716 8.070034 ACCATTGATTTCATTGCTCTATTCAA 57.930 30.769 0.00 0.00 0.00 2.69
4453 4717 7.649533 ACCATTGATTTCATTGCTCTATTCA 57.350 32.000 0.00 0.00 0.00 2.57
4454 4718 8.192774 TCAACCATTGATTTCATTGCTCTATTC 58.807 33.333 0.00 0.00 34.08 1.75
4457 4721 6.885918 TCTCAACCATTGATTTCATTGCTCTA 59.114 34.615 0.00 0.00 39.30 2.43
4459 4723 5.957798 TCTCAACCATTGATTTCATTGCTC 58.042 37.500 0.00 0.00 39.30 4.26
4460 4724 5.988310 TCTCAACCATTGATTTCATTGCT 57.012 34.783 0.00 0.00 39.30 3.91
4461 4725 6.334989 TCATCTCAACCATTGATTTCATTGC 58.665 36.000 0.00 0.00 39.30 3.56
4462 4726 7.042725 GCATCATCTCAACCATTGATTTCATTG 60.043 37.037 0.00 0.00 39.30 2.82
4466 4730 5.898174 TGCATCATCTCAACCATTGATTTC 58.102 37.500 0.00 0.00 39.30 2.17
4467 4731 5.925506 TGCATCATCTCAACCATTGATTT 57.074 34.783 0.00 0.00 39.30 2.17
4468 4732 6.479972 AATGCATCATCTCAACCATTGATT 57.520 33.333 0.00 0.00 39.30 2.57
4469 4733 6.097696 TGAAATGCATCATCTCAACCATTGAT 59.902 34.615 0.00 0.00 39.30 2.57
4470 4734 5.419471 TGAAATGCATCATCTCAACCATTGA 59.581 36.000 0.00 0.00 38.17 2.57
4471 4735 5.656480 TGAAATGCATCATCTCAACCATTG 58.344 37.500 0.00 0.00 0.00 2.82
4472 4736 5.925506 TGAAATGCATCATCTCAACCATT 57.074 34.783 0.00 0.00 0.00 3.16
4473 4737 5.681437 GCTTGAAATGCATCATCTCAACCAT 60.681 40.000 0.00 0.00 36.91 3.55
4474 4738 4.381185 GCTTGAAATGCATCATCTCAACCA 60.381 41.667 0.00 0.00 36.91 3.67
4475 4739 4.110482 GCTTGAAATGCATCATCTCAACC 58.890 43.478 0.00 0.00 36.91 3.77
4476 4740 4.740268 TGCTTGAAATGCATCATCTCAAC 58.260 39.130 0.00 3.82 42.52 3.18
4522 4786 1.614385 CGTCGCGATGTACTGAACTT 58.386 50.000 20.17 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.