Multiple sequence alignment - TraesCS3B01G362900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G362900 chr3B 100.000 3542 0 0 1 3542 574378055 574381596 0.000000e+00 6541.0
1 TraesCS3B01G362900 chr3B 89.698 1058 95 9 1612 2656 574341506 574342562 0.000000e+00 1338.0
2 TraesCS3B01G362900 chr3B 92.511 681 46 3 912 1587 574340714 574341394 0.000000e+00 970.0
3 TraesCS3B01G362900 chr3B 84.356 978 81 30 2 915 574339719 574340688 0.000000e+00 893.0
4 TraesCS3B01G362900 chr3B 82.917 960 146 11 1627 2576 574523882 574524833 0.000000e+00 848.0
5 TraesCS3B01G362900 chr3B 93.399 409 17 7 3006 3406 820436393 820435987 6.540000e-167 597.0
6 TraesCS3B01G362900 chr3B 93.103 406 16 4 3011 3406 798589116 798589519 5.100000e-163 584.0
7 TraesCS3B01G362900 chr3B 85.386 479 58 3 1060 1535 574523270 574523739 1.480000e-133 486.0
8 TraesCS3B01G362900 chr3B 76.718 451 72 25 64 492 28257652 28258091 1.660000e-53 220.0
9 TraesCS3B01G362900 chr3B 76.531 294 49 15 1088 1377 574677881 574678158 3.690000e-30 143.0
10 TraesCS3B01G362900 chr3D 93.153 2103 126 12 912 3006 438542734 438544826 0.000000e+00 3070.0
11 TraesCS3B01G362900 chr3D 94.118 136 8 0 3407 3542 438544818 438544953 1.290000e-49 207.0
12 TraesCS3B01G362900 chr3D 83.408 223 26 4 695 912 438542489 438542705 2.790000e-46 196.0
13 TraesCS3B01G362900 chr3D 76.596 282 53 11 1101 1377 438566701 438566974 3.690000e-30 143.0
14 TraesCS3B01G362900 chr3A 92.308 1014 74 3 1612 2622 577077391 577078403 0.000000e+00 1437.0
15 TraesCS3B01G362900 chr3A 95.397 630 26 2 964 1590 577076616 577077245 0.000000e+00 1000.0
16 TraesCS3B01G362900 chr3A 83.265 974 147 13 1613 2577 577239686 577240652 0.000000e+00 881.0
17 TraesCS3B01G362900 chr3A 76.138 637 96 29 15 612 735384420 735383801 2.080000e-72 283.0
18 TraesCS3B01G362900 chr3A 89.583 192 14 4 700 887 577076319 577076508 4.570000e-59 239.0
19 TraesCS3B01G362900 chr3A 86.700 203 25 1 1027 1227 577238720 577238922 1.280000e-54 224.0
20 TraesCS3B01G362900 chr3A 74.239 427 89 18 1088 1508 577559365 577559776 3.660000e-35 159.0
21 TraesCS3B01G362900 chr3A 91.089 101 9 0 2608 2708 577078570 577078670 1.710000e-28 137.0
22 TraesCS3B01G362900 chr7B 81.737 898 139 18 1636 2514 574486884 574485993 0.000000e+00 726.0
23 TraesCS3B01G362900 chr7B 93.873 408 14 5 3007 3406 184247540 184247136 3.910000e-169 604.0
24 TraesCS3B01G362900 chr7B 83.436 489 54 8 1054 1539 574487536 574487072 2.530000e-116 429.0
25 TraesCS3B01G362900 chr7B 89.147 129 14 0 3407 3535 346689422 346689294 1.020000e-35 161.0
26 TraesCS3B01G362900 chr7B 80.628 191 23 11 2797 2977 112650099 112650285 6.170000e-28 135.0
27 TraesCS3B01G362900 chr7B 79.899 199 29 7 2789 2979 572035566 572035761 6.170000e-28 135.0
28 TraesCS3B01G362900 chr6B 93.415 410 15 7 3007 3406 583272401 583271994 6.540000e-167 597.0
29 TraesCS3B01G362900 chr6B 75.305 328 50 17 309 621 669052674 669052363 1.030000e-25 128.0
30 TraesCS3B01G362900 chr1A 92.944 411 22 5 3003 3406 251154122 251154532 3.040000e-165 592.0
31 TraesCS3B01G362900 chr1A 92.048 415 18 7 3005 3406 435344491 435344079 1.430000e-158 569.0
32 TraesCS3B01G362900 chr1A 90.698 129 12 0 3407 3535 292959660 292959532 4.700000e-39 172.0
33 TraesCS3B01G362900 chr1A 80.928 194 34 2 2815 3006 349338684 349338492 2.200000e-32 150.0
34 TraesCS3B01G362900 chr1A 77.500 280 42 15 1101 1377 500842761 500842500 7.920000e-32 148.0
35 TraesCS3B01G362900 chr5A 92.944 411 17 8 3006 3405 670577358 670577767 3.940000e-164 588.0
36 TraesCS3B01G362900 chr5A 78.495 651 90 24 2 612 394767538 394768178 7.180000e-102 381.0
37 TraesCS3B01G362900 chr5B 92.233 412 20 6 3006 3406 500634445 500634035 1.100000e-159 573.0
38 TraesCS3B01G362900 chr5B 91.990 412 23 3 3004 3406 606483622 606484032 1.430000e-158 569.0
39 TraesCS3B01G362900 chr5B 74.534 483 92 22 12 473 6576876 6577348 7.810000e-42 182.0
40 TraesCS3B01G362900 chr6D 79.814 644 85 26 2 612 418458594 418459225 9.090000e-116 427.0
41 TraesCS3B01G362900 chr6D 82.803 471 56 21 2 454 156430318 156429855 7.120000e-107 398.0
42 TraesCS3B01G362900 chr6D 77.223 641 98 23 7 612 380578139 380577512 7.330000e-87 331.0
43 TraesCS3B01G362900 chr6D 89.147 129 14 0 3407 3535 105902983 105902855 1.020000e-35 161.0
44 TraesCS3B01G362900 chr6D 81.765 170 25 6 2814 2979 354551174 354551007 1.710000e-28 137.0
45 TraesCS3B01G362900 chr2D 79.134 647 89 21 2 610 589507751 589508389 4.260000e-109 405.0
46 TraesCS3B01G362900 chr2D 78.389 509 55 31 2 492 527496843 527497314 2.690000e-71 279.0
47 TraesCS3B01G362900 chr2D 80.729 192 26 7 2797 2979 297304515 297304704 4.770000e-29 139.0
48 TraesCS3B01G362900 chr2D 82.558 86 11 4 2125 2208 108935425 108935508 4.900000e-09 73.1
49 TraesCS3B01G362900 chr2B 78.383 643 93 23 7 612 202289794 202289161 3.340000e-100 375.0
50 TraesCS3B01G362900 chr2B 77.326 344 50 12 289 611 462730270 462730606 1.010000e-40 178.0
51 TraesCS3B01G362900 chr2B 81.871 171 23 7 2814 2979 364323778 364323945 1.710000e-28 137.0
52 TraesCS3B01G362900 chr2B 94.805 77 3 1 936 1012 693074193 693074268 6.210000e-23 119.0
53 TraesCS3B01G362900 chr2B 81.176 85 14 2 2125 2208 158632850 158632933 2.280000e-07 67.6
54 TraesCS3B01G362900 chr1B 78.527 638 88 23 10 612 133809769 133810392 1.200000e-99 374.0
55 TraesCS3B01G362900 chr1B 77.119 354 55 12 284 612 9750174 9749822 7.810000e-42 182.0
56 TraesCS3B01G362900 chr1B 80.315 127 25 0 1254 1380 545277435 545277309 2.910000e-16 97.1
57 TraesCS3B01G362900 chr4A 77.640 644 86 29 7 612 7178964 7178341 4.380000e-89 339.0
58 TraesCS3B01G362900 chr5D 79.371 509 81 18 2 492 524503078 524502576 1.580000e-88 337.0
59 TraesCS3B01G362900 chr5D 79.688 192 28 9 2797 2979 436826651 436826840 1.030000e-25 128.0
60 TraesCS3B01G362900 chr1D 76.570 653 106 28 2 621 240986623 240987261 7.380000e-82 315.0
61 TraesCS3B01G362900 chr1D 89.922 129 13 0 3407 3535 340467552 340467680 2.190000e-37 167.0
62 TraesCS3B01G362900 chr1D 75.972 283 47 14 1101 1380 405376260 405375996 3.710000e-25 126.0
63 TraesCS3B01G362900 chr7A 75.575 696 121 31 9 666 56737140 56737824 7.430000e-77 298.0
64 TraesCS3B01G362900 chr7A 83.643 269 37 6 7 272 670987313 670987577 2.730000e-61 246.0
65 TraesCS3B01G362900 chr7A 90.000 130 11 2 3407 3535 222412820 222412948 2.190000e-37 167.0
66 TraesCS3B01G362900 chr6A 90.698 129 12 0 3407 3535 492099303 492099431 4.700000e-39 172.0
67 TraesCS3B01G362900 chr6A 89.922 129 13 0 3407 3535 128689980 128689852 2.190000e-37 167.0
68 TraesCS3B01G362900 chr4D 89.922 129 13 0 3407 3535 366339153 366339281 2.190000e-37 167.0
69 TraesCS3B01G362900 chr7D 79.474 190 27 10 2797 2977 150768361 150768547 1.340000e-24 124.0
70 TraesCS3B01G362900 chr7D 88.525 61 5 2 499 558 136587938 136587879 4.900000e-09 73.1
71 TraesCS3B01G362900 chr2A 84.286 70 9 2 2140 2208 104921004 104921072 2.280000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G362900 chr3B 574378055 574381596 3541 False 6541.000000 6541 100.000000 1 3542 1 chr3B.!!$F2 3541
1 TraesCS3B01G362900 chr3B 574339719 574342562 2843 False 1067.000000 1338 88.855000 2 2656 3 chr3B.!!$F5 2654
2 TraesCS3B01G362900 chr3B 574523270 574524833 1563 False 667.000000 848 84.151500 1060 2576 2 chr3B.!!$F6 1516
3 TraesCS3B01G362900 chr3D 438542489 438544953 2464 False 1157.666667 3070 90.226333 695 3542 3 chr3D.!!$F2 2847
4 TraesCS3B01G362900 chr3A 577076319 577078670 2351 False 703.250000 1437 92.094250 700 2708 4 chr3A.!!$F2 2008
5 TraesCS3B01G362900 chr3A 577238720 577240652 1932 False 552.500000 881 84.982500 1027 2577 2 chr3A.!!$F3 1550
6 TraesCS3B01G362900 chr3A 735383801 735384420 619 True 283.000000 283 76.138000 15 612 1 chr3A.!!$R1 597
7 TraesCS3B01G362900 chr7B 574485993 574487536 1543 True 577.500000 726 82.586500 1054 2514 2 chr7B.!!$R3 1460
8 TraesCS3B01G362900 chr5A 394767538 394768178 640 False 381.000000 381 78.495000 2 612 1 chr5A.!!$F1 610
9 TraesCS3B01G362900 chr6D 418458594 418459225 631 False 427.000000 427 79.814000 2 612 1 chr6D.!!$F1 610
10 TraesCS3B01G362900 chr6D 380577512 380578139 627 True 331.000000 331 77.223000 7 612 1 chr6D.!!$R4 605
11 TraesCS3B01G362900 chr2D 589507751 589508389 638 False 405.000000 405 79.134000 2 610 1 chr2D.!!$F4 608
12 TraesCS3B01G362900 chr2B 202289161 202289794 633 True 375.000000 375 78.383000 7 612 1 chr2B.!!$R1 605
13 TraesCS3B01G362900 chr1B 133809769 133810392 623 False 374.000000 374 78.527000 10 612 1 chr1B.!!$F1 602
14 TraesCS3B01G362900 chr4A 7178341 7178964 623 True 339.000000 339 77.640000 7 612 1 chr4A.!!$R1 605
15 TraesCS3B01G362900 chr5D 524502576 524503078 502 True 337.000000 337 79.371000 2 492 1 chr5D.!!$R1 490
16 TraesCS3B01G362900 chr1D 240986623 240987261 638 False 315.000000 315 76.570000 2 621 1 chr1D.!!$F1 619
17 TraesCS3B01G362900 chr7A 56737140 56737824 684 False 298.000000 298 75.575000 9 666 1 chr7A.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 268 1.084289 GTGGTTCTGTGTTATCGGCC 58.916 55.0 0.0 0.0 0.0 6.13 F
1107 1320 0.392461 ACATGGTCGCTTTGCCGTAT 60.392 50.0 0.0 0.0 0.0 3.06 F
1137 1350 0.395586 GCCACATCAACCCCATGCTA 60.396 55.0 0.0 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 2516 0.037447 GATAGATGGGGCAGGGAAGC 59.963 60.0 0.00 0.0 0.00 3.86 R
2506 3180 0.109913 GGGACGTCCAGTTTTCCCTT 59.890 55.0 34.40 0.0 37.91 3.95 R
3002 3870 0.384309 CAGATTAGCCGCGTCCAGTA 59.616 55.0 4.92 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 154 8.797436 ATACCCCTTATATTTTGGAATTGCTT 57.203 30.769 0.00 0.00 0.00 3.91
191 202 9.383519 GAGGAGATGATGAAGTGTGTTTTATTA 57.616 33.333 0.00 0.00 0.00 0.98
248 265 2.761559 TGGTGTGGTTCTGTGTTATCG 58.238 47.619 0.00 0.00 0.00 2.92
251 268 1.084289 GTGGTTCTGTGTTATCGGCC 58.916 55.000 0.00 0.00 0.00 6.13
360 406 2.355115 GGAGGGTGCACCGGATTT 59.645 61.111 29.08 12.07 46.96 2.17
563 631 9.238368 CTTAATTGAAGACCCCAATTAGTTGTA 57.762 33.333 0.00 0.00 43.27 2.41
633 722 4.918810 AAAACAGCTCGGTCAAAATCTT 57.081 36.364 0.00 0.00 0.00 2.40
674 763 5.957168 TGGAAATCTTAATTGAATGGGAGCA 59.043 36.000 0.00 0.00 0.00 4.26
676 765 7.784073 TGGAAATCTTAATTGAATGGGAGCATA 59.216 33.333 0.00 0.00 0.00 3.14
677 766 8.302438 GGAAATCTTAATTGAATGGGAGCATAG 58.698 37.037 0.00 0.00 0.00 2.23
679 768 7.756395 ATCTTAATTGAATGGGAGCATAGTG 57.244 36.000 0.00 0.00 0.00 2.74
680 769 6.662755 TCTTAATTGAATGGGAGCATAGTGT 58.337 36.000 0.00 0.00 0.00 3.55
681 770 7.118723 TCTTAATTGAATGGGAGCATAGTGTT 58.881 34.615 0.00 0.00 0.00 3.32
683 772 8.995027 TTAATTGAATGGGAGCATAGTGTTAT 57.005 30.769 0.00 0.00 0.00 1.89
686 775 8.995027 ATTGAATGGGAGCATAGTGTTATAAA 57.005 30.769 0.00 0.00 0.00 1.40
687 776 8.995027 TTGAATGGGAGCATAGTGTTATAAAT 57.005 30.769 0.00 0.00 0.00 1.40
690 779 9.236006 GAATGGGAGCATAGTGTTATAAATGAT 57.764 33.333 0.04 0.00 0.00 2.45
691 780 9.592196 AATGGGAGCATAGTGTTATAAATGATT 57.408 29.630 0.04 0.00 0.00 2.57
750 855 8.065473 TCATTTGCAACACTATACAATTCCAT 57.935 30.769 0.00 0.00 0.00 3.41
760 865 9.547753 ACACTATACAATTCCATTCATACAGAC 57.452 33.333 0.00 0.00 0.00 3.51
790 895 4.464008 TGATTCTTCTGTTGGCTTTGTCT 58.536 39.130 0.00 0.00 0.00 3.41
815 920 3.887716 GGGAATCAGACAGCTGCATTATT 59.112 43.478 15.27 9.08 42.01 1.40
816 921 5.065914 GGGAATCAGACAGCTGCATTATTA 58.934 41.667 15.27 0.00 42.01 0.98
817 922 5.709164 GGGAATCAGACAGCTGCATTATTAT 59.291 40.000 15.27 0.00 42.01 1.28
1002 1210 6.653273 AAGTATGACAACGTCTCAATCATG 57.347 37.500 0.00 0.00 33.15 3.07
1006 1214 2.673368 GACAACGTCTCAATCATGACCC 59.327 50.000 0.00 0.00 0.00 4.46
1107 1320 0.392461 ACATGGTCGCTTTGCCGTAT 60.392 50.000 0.00 0.00 0.00 3.06
1110 1323 1.448893 GGTCGCTTTGCCGTATCCA 60.449 57.895 0.00 0.00 0.00 3.41
1137 1350 0.395586 GCCACATCAACCCCATGCTA 60.396 55.000 0.00 0.00 0.00 3.49
1535 2053 4.517663 CCATTTGGACCTGTGGCA 57.482 55.556 0.00 0.00 37.39 4.92
1561 2082 0.531974 GGTTGAAGGTGTCAGCGACA 60.532 55.000 7.20 7.20 40.50 4.35
1628 2287 2.560504 ACAAGACAACTGATGCGTTCA 58.439 42.857 0.00 0.00 0.00 3.18
1708 2373 6.322456 CCTCTCATCAGTAAGGTTGTCTGATA 59.678 42.308 6.58 0.00 43.98 2.15
1845 2516 4.397103 TCCATGAGCAAAATAGCAGAGTTG 59.603 41.667 0.00 0.00 36.85 3.16
2411 3085 1.144936 CCGGCCAAGAGATGAGGAC 59.855 63.158 2.24 0.00 0.00 3.85
2515 3189 1.095600 GGATCTCGGCAAGGGAAAAC 58.904 55.000 0.00 0.00 29.93 2.43
2520 3194 0.536460 TCGGCAAGGGAAAACTGGAC 60.536 55.000 0.00 0.00 0.00 4.02
2524 3198 1.235724 CAAGGGAAAACTGGACGTCC 58.764 55.000 28.17 28.17 0.00 4.79
2555 3234 3.430895 TCTGCGTGATTTCCTTCGTTTAC 59.569 43.478 0.00 0.00 0.00 2.01
2568 3247 4.322049 CCTTCGTTTACTCCAGTCAGTGAT 60.322 45.833 0.00 0.00 0.00 3.06
2577 3256 9.436957 TTTACTCCAGTCAGTGATAGAAAAATC 57.563 33.333 0.00 0.00 0.00 2.17
2680 3546 3.169099 CATTCTGACCGATCCCTATCCT 58.831 50.000 0.00 0.00 0.00 3.24
2685 3551 1.179814 ACCGATCCCTATCCTGCGTC 61.180 60.000 0.00 0.00 0.00 5.19
2700 3566 2.670414 CTGCGTCAGAGGAAGACAAATC 59.330 50.000 0.00 0.00 35.77 2.17
2751 3617 9.596308 ACTTAACCAAACTCCTAAAACCATTAT 57.404 29.630 0.00 0.00 0.00 1.28
2754 3620 8.485578 AACCAAACTCCTAAAACCATTATTGA 57.514 30.769 0.00 0.00 0.00 2.57
2755 3621 8.485578 ACCAAACTCCTAAAACCATTATTGAA 57.514 30.769 0.00 0.00 0.00 2.69
2780 3646 5.065602 GGAAAATAATTACTCCACGGTGGTC 59.934 44.000 25.53 11.49 39.03 4.02
2781 3647 3.832615 ATAATTACTCCACGGTGGTCC 57.167 47.619 25.53 0.00 39.03 4.46
2787 3653 1.458777 TCCACGGTGGTCCTGACTT 60.459 57.895 25.53 0.00 39.03 3.01
2798 3664 6.206048 CGGTGGTCCTGACTTTTAAATAAGTT 59.794 38.462 0.00 0.00 38.43 2.66
2847 3713 4.947388 GCCTACAATCACCCAGAAACAATA 59.053 41.667 0.00 0.00 0.00 1.90
2863 3729 9.770503 CAGAAACAATATGAAGATGCATATAGC 57.229 33.333 0.00 0.00 39.80 2.97
2893 3759 3.684305 TCAACGATCGTTACTAACTCCGA 59.316 43.478 31.27 18.37 36.46 4.55
2900 3766 3.004629 TCGTTACTAACTCCGAAGTGCAA 59.995 43.478 0.00 0.00 35.36 4.08
2903 3769 1.338973 ACTAACTCCGAAGTGCAACGA 59.661 47.619 10.06 0.00 45.86 3.85
2911 3777 7.516188 ACTCCGAAGTGCAACGAAAGTAGAT 62.516 44.000 10.06 0.00 45.86 1.98
2958 3826 3.262420 CCTCGAACCTTTGATGACGATT 58.738 45.455 0.00 0.00 0.00 3.34
2961 3829 3.000041 CGAACCTTTGATGACGATTCCA 59.000 45.455 0.00 0.00 0.00 3.53
2962 3830 3.623060 CGAACCTTTGATGACGATTCCAT 59.377 43.478 0.00 0.00 0.00 3.41
2977 3845 2.106683 CCATGAACCGCCCTCGAAC 61.107 63.158 0.00 0.00 38.10 3.95
2978 3846 2.125673 ATGAACCGCCCTCGAACG 60.126 61.111 0.00 0.00 38.10 3.95
2985 3853 2.674084 CGCCCTCGAACGGAAAACC 61.674 63.158 2.36 0.00 38.10 3.27
2991 3859 1.862827 CTCGAACGGAAAACCGAAAGT 59.137 47.619 15.45 0.00 36.94 2.66
3001 3869 4.808649 CCGAAAGTACGGCCTCTC 57.191 61.111 0.00 0.00 46.20 3.20
3002 3870 2.190756 CCGAAAGTACGGCCTCTCT 58.809 57.895 0.00 0.00 46.20 3.10
3003 3871 1.386533 CCGAAAGTACGGCCTCTCTA 58.613 55.000 0.00 0.00 46.20 2.43
3004 3872 1.065251 CCGAAAGTACGGCCTCTCTAC 59.935 57.143 0.00 0.00 46.20 2.59
3005 3873 2.015587 CGAAAGTACGGCCTCTCTACT 58.984 52.381 0.00 0.00 0.00 2.57
3006 3874 2.223294 CGAAAGTACGGCCTCTCTACTG 60.223 54.545 0.00 0.00 0.00 2.74
3007 3875 1.765230 AAGTACGGCCTCTCTACTGG 58.235 55.000 0.00 0.00 0.00 4.00
3008 3876 0.917533 AGTACGGCCTCTCTACTGGA 59.082 55.000 0.00 0.00 0.00 3.86
3009 3877 1.023502 GTACGGCCTCTCTACTGGAC 58.976 60.000 0.00 0.00 0.00 4.02
3011 3879 2.809010 GGCCTCTCTACTGGACGC 59.191 66.667 0.00 0.00 0.00 5.19
3012 3880 2.409651 GCCTCTCTACTGGACGCG 59.590 66.667 3.53 3.53 0.00 6.01
3013 3881 3.111939 CCTCTCTACTGGACGCGG 58.888 66.667 12.47 0.00 0.00 6.46
3014 3882 2.409651 CTCTCTACTGGACGCGGC 59.590 66.667 12.47 7.53 0.00 6.53
3015 3883 2.045242 TCTCTACTGGACGCGGCT 60.045 61.111 13.91 0.00 0.00 5.52
3016 3884 0.814410 CTCTCTACTGGACGCGGCTA 60.814 60.000 13.91 4.09 0.00 3.93
3017 3885 0.393402 TCTCTACTGGACGCGGCTAA 60.393 55.000 13.91 0.00 0.00 3.09
3018 3886 0.669077 CTCTACTGGACGCGGCTAAT 59.331 55.000 13.91 0.00 0.00 1.73
3019 3887 0.666913 TCTACTGGACGCGGCTAATC 59.333 55.000 13.91 0.00 0.00 1.75
3020 3888 0.669077 CTACTGGACGCGGCTAATCT 59.331 55.000 13.91 0.00 0.00 2.40
3021 3889 0.384309 TACTGGACGCGGCTAATCTG 59.616 55.000 13.91 0.86 0.00 2.90
3022 3890 2.202878 TGGACGCGGCTAATCTGC 60.203 61.111 13.91 0.00 43.66 4.26
3027 3895 3.272334 GCGGCTAATCTGCACCCG 61.272 66.667 0.00 0.00 46.35 5.28
3028 3896 2.499205 CGGCTAATCTGCACCCGA 59.501 61.111 0.00 0.00 41.34 5.14
3029 3897 1.592669 CGGCTAATCTGCACCCGAG 60.593 63.158 0.00 0.00 41.34 4.63
3030 3898 1.889573 GGCTAATCTGCACCCGAGC 60.890 63.158 0.00 0.00 34.04 5.03
3031 3899 1.144936 GCTAATCTGCACCCGAGCT 59.855 57.895 0.00 0.00 34.99 4.09
3032 3900 0.878086 GCTAATCTGCACCCGAGCTC 60.878 60.000 2.73 2.73 34.99 4.09
3033 3901 0.461548 CTAATCTGCACCCGAGCTCA 59.538 55.000 15.40 0.00 34.99 4.26
3034 3902 1.069823 CTAATCTGCACCCGAGCTCAT 59.930 52.381 15.40 0.00 34.99 2.90
3035 3903 1.123077 AATCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
3036 3904 1.346062 ATCTGCACCCGAGCTCATAT 58.654 50.000 15.40 0.00 34.99 1.78
3037 3905 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
3038 3906 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
3053 3921 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
3054 3922 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
3055 3923 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
3056 3924 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
3057 3925 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
3058 3926 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
3059 3927 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
3060 3928 3.680490 TCCCGCATGAACAGTAAAATCA 58.320 40.909 0.00 0.00 0.00 2.57
3061 3929 4.075682 TCCCGCATGAACAGTAAAATCAA 58.924 39.130 0.00 0.00 0.00 2.57
3062 3930 4.520874 TCCCGCATGAACAGTAAAATCAAA 59.479 37.500 0.00 0.00 0.00 2.69
3063 3931 5.010112 TCCCGCATGAACAGTAAAATCAAAA 59.990 36.000 0.00 0.00 0.00 2.44
3064 3932 5.694006 CCCGCATGAACAGTAAAATCAAAAA 59.306 36.000 0.00 0.00 0.00 1.94
3124 3992 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
3125 3993 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
3126 3994 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
3127 3995 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
3128 3996 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
3129 3997 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
3130 3998 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
3131 3999 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
3132 4000 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
3133 4001 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
3134 4002 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
3135 4003 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
3136 4004 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
3137 4005 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
3138 4006 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
3139 4007 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
3140 4008 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
3141 4009 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
3142 4010 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
3143 4011 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
3144 4012 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
3145 4013 5.302823 AGTTCTAAGTGCCTGCAAAAATTCT 59.697 36.000 0.00 0.00 0.00 2.40
3146 4014 5.789643 TCTAAGTGCCTGCAAAAATTCTT 57.210 34.783 0.00 0.00 0.00 2.52
3147 4015 5.772521 TCTAAGTGCCTGCAAAAATTCTTC 58.227 37.500 0.00 0.00 0.00 2.87
3148 4016 4.405116 AAGTGCCTGCAAAAATTCTTCA 57.595 36.364 0.00 0.00 0.00 3.02
3149 4017 4.612264 AGTGCCTGCAAAAATTCTTCAT 57.388 36.364 0.00 0.00 0.00 2.57
3150 4018 4.312443 AGTGCCTGCAAAAATTCTTCATG 58.688 39.130 0.00 0.00 0.00 3.07
3151 4019 4.039488 AGTGCCTGCAAAAATTCTTCATGA 59.961 37.500 0.00 0.00 0.00 3.07
3152 4020 4.751098 GTGCCTGCAAAAATTCTTCATGAA 59.249 37.500 8.12 8.12 39.24 2.57
3153 4021 5.236911 GTGCCTGCAAAAATTCTTCATGAAA 59.763 36.000 9.88 0.00 38.29 2.69
3154 4022 5.998981 TGCCTGCAAAAATTCTTCATGAAAT 59.001 32.000 9.88 0.00 38.29 2.17
3155 4023 6.148150 TGCCTGCAAAAATTCTTCATGAAATC 59.852 34.615 9.88 0.00 38.29 2.17
3156 4024 6.148150 GCCTGCAAAAATTCTTCATGAAATCA 59.852 34.615 9.88 0.00 38.29 2.57
3157 4025 7.515643 CCTGCAAAAATTCTTCATGAAATCAC 58.484 34.615 9.88 0.00 38.29 3.06
3158 4026 7.171848 CCTGCAAAAATTCTTCATGAAATCACA 59.828 33.333 9.88 0.00 38.29 3.58
3159 4027 8.610248 TGCAAAAATTCTTCATGAAATCACAT 57.390 26.923 9.88 0.00 38.29 3.21
3160 4028 9.058174 TGCAAAAATTCTTCATGAAATCACATT 57.942 25.926 9.88 1.25 38.29 2.71
3161 4029 9.537848 GCAAAAATTCTTCATGAAATCACATTC 57.462 29.630 9.88 0.00 38.29 2.67
3169 4037 8.742777 TCTTCATGAAATCACATTCCTAAAAGG 58.257 33.333 9.88 0.00 36.46 3.11
3170 4038 6.866480 TCATGAAATCACATTCCTAAAAGGC 58.134 36.000 0.00 0.00 34.61 4.35
3171 4039 5.309323 TGAAATCACATTCCTAAAAGGCG 57.691 39.130 0.00 0.00 34.61 5.52
3172 4040 4.764823 TGAAATCACATTCCTAAAAGGCGT 59.235 37.500 0.00 0.00 34.61 5.68
3173 4041 4.701956 AATCACATTCCTAAAAGGCGTG 57.298 40.909 0.00 0.00 34.61 5.34
3174 4042 2.432444 TCACATTCCTAAAAGGCGTGG 58.568 47.619 8.95 0.00 34.61 4.94
3175 4043 1.135402 CACATTCCTAAAAGGCGTGGC 60.135 52.381 0.00 0.00 34.61 5.01
3176 4044 1.173043 CATTCCTAAAAGGCGTGGCA 58.827 50.000 0.00 0.00 34.61 4.92
3177 4045 1.543802 CATTCCTAAAAGGCGTGGCAA 59.456 47.619 0.00 0.00 34.61 4.52
3178 4046 1.693627 TTCCTAAAAGGCGTGGCAAA 58.306 45.000 0.00 0.00 34.61 3.68
3179 4047 1.693627 TCCTAAAAGGCGTGGCAAAA 58.306 45.000 0.00 0.00 34.61 2.44
3180 4048 2.032620 TCCTAAAAGGCGTGGCAAAAA 58.967 42.857 0.00 0.00 34.61 1.94
3207 4075 9.998106 AATAGTACTCTGAAAAAGCTACTTTCA 57.002 29.630 18.13 18.13 39.79 2.69
3208 4076 9.998106 ATAGTACTCTGAAAAAGCTACTTTCAA 57.002 29.630 19.14 12.10 41.10 2.69
3209 4077 8.732746 AGTACTCTGAAAAAGCTACTTTCAAA 57.267 30.769 19.14 9.92 41.10 2.69
3210 4078 8.613482 AGTACTCTGAAAAAGCTACTTTCAAAC 58.387 33.333 19.14 15.25 41.10 2.93
3211 4079 6.487103 ACTCTGAAAAAGCTACTTTCAAACG 58.513 36.000 19.14 14.03 41.10 3.60
3212 4080 5.270853 TCTGAAAAAGCTACTTTCAAACGC 58.729 37.500 19.14 0.00 41.10 4.84
3213 4081 4.987832 TGAAAAAGCTACTTTCAAACGCA 58.012 34.783 17.31 0.00 39.28 5.24
3214 4082 5.587289 TGAAAAAGCTACTTTCAAACGCAT 58.413 33.333 17.31 0.00 39.28 4.73
3215 4083 6.039616 TGAAAAAGCTACTTTCAAACGCATT 58.960 32.000 17.31 0.00 39.28 3.56
3216 4084 6.533367 TGAAAAAGCTACTTTCAAACGCATTT 59.467 30.769 17.31 0.00 39.28 2.32
3217 4085 6.902224 AAAAGCTACTTTCAAACGCATTTT 57.098 29.167 0.00 0.00 31.99 1.82
3218 4086 5.888412 AAGCTACTTTCAAACGCATTTTG 57.112 34.783 0.00 2.03 45.38 2.44
3226 4094 3.492725 CAAACGCATTTTGAAGCACTG 57.507 42.857 2.24 0.00 46.76 3.66
3227 4095 2.138596 AACGCATTTTGAAGCACTGG 57.861 45.000 0.00 0.00 0.00 4.00
3228 4096 1.317613 ACGCATTTTGAAGCACTGGA 58.682 45.000 0.00 0.00 0.00 3.86
3229 4097 1.888512 ACGCATTTTGAAGCACTGGAT 59.111 42.857 0.00 0.00 0.00 3.41
3230 4098 2.297033 ACGCATTTTGAAGCACTGGATT 59.703 40.909 0.00 0.00 0.00 3.01
3231 4099 3.243839 ACGCATTTTGAAGCACTGGATTT 60.244 39.130 0.00 0.00 0.00 2.17
3232 4100 3.122278 CGCATTTTGAAGCACTGGATTTG 59.878 43.478 0.00 0.00 0.00 2.32
3233 4101 4.060205 GCATTTTGAAGCACTGGATTTGT 58.940 39.130 0.00 0.00 0.00 2.83
3234 4102 4.512571 GCATTTTGAAGCACTGGATTTGTT 59.487 37.500 0.00 0.00 0.00 2.83
3235 4103 5.007921 GCATTTTGAAGCACTGGATTTGTTT 59.992 36.000 0.00 0.00 0.00 2.83
3236 4104 6.458615 GCATTTTGAAGCACTGGATTTGTTTT 60.459 34.615 0.00 0.00 0.00 2.43
3237 4105 7.474190 CATTTTGAAGCACTGGATTTGTTTTT 58.526 30.769 0.00 0.00 0.00 1.94
3254 4122 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
3255 4123 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
3256 4124 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
3257 4125 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
3258 4126 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
3259 4127 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
3260 4128 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
3261 4129 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
3262 4130 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
3263 4131 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
3264 4132 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
3265 4133 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
3266 4134 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
3267 4135 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
3268 4136 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
3269 4137 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
3270 4138 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
3271 4139 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
3272 4140 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
3273 4141 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
3274 4142 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
3275 4143 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
3276 4144 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
3277 4145 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
3278 4146 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
3279 4147 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
3280 4148 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
3281 4149 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
3282 4150 6.144241 TGTGATTTCATGACGAATTTTTGCAG 59.856 34.615 0.00 0.00 32.32 4.41
3283 4151 5.634439 TGATTTCATGACGAATTTTTGCAGG 59.366 36.000 0.00 0.00 32.32 4.85
3284 4152 2.945278 TCATGACGAATTTTTGCAGGC 58.055 42.857 0.00 0.00 0.00 4.85
3285 4153 2.295629 TCATGACGAATTTTTGCAGGCA 59.704 40.909 0.00 0.00 0.00 4.75
3286 4154 2.132740 TGACGAATTTTTGCAGGCAC 57.867 45.000 0.00 0.00 0.00 5.01
3287 4155 1.680735 TGACGAATTTTTGCAGGCACT 59.319 42.857 0.00 0.00 43.88 4.40
3288 4156 2.100584 TGACGAATTTTTGCAGGCACTT 59.899 40.909 0.00 0.00 34.60 3.16
3289 4157 3.316588 TGACGAATTTTTGCAGGCACTTA 59.683 39.130 0.00 0.00 34.60 2.24
3290 4158 3.900941 ACGAATTTTTGCAGGCACTTAG 58.099 40.909 0.00 0.00 34.60 2.18
3291 4159 3.568007 ACGAATTTTTGCAGGCACTTAGA 59.432 39.130 0.00 0.00 34.60 2.10
3292 4160 4.037446 ACGAATTTTTGCAGGCACTTAGAA 59.963 37.500 0.00 0.00 34.60 2.10
3293 4161 4.382754 CGAATTTTTGCAGGCACTTAGAAC 59.617 41.667 0.00 0.00 34.60 3.01
3294 4162 5.532557 GAATTTTTGCAGGCACTTAGAACT 58.467 37.500 0.00 0.00 34.60 3.01
3295 4163 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
3296 4164 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
3297 4165 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
3298 4166 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
3299 4167 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
3300 4168 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
3301 4169 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
3302 4170 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
3303 4171 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
3304 4172 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
3305 4173 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
3306 4174 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
3307 4175 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
3308 4176 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
3309 4177 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
3310 4178 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
3311 4179 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
3312 4180 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
3313 4181 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
3314 4182 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
3315 4183 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
3316 4184 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
3317 4185 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
3369 4237 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
3370 4238 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
3371 4239 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
3372 4240 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
3373 4241 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
3390 4258 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
3391 4259 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
3392 4260 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
3393 4261 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
3394 4262 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
3395 4263 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
3396 4264 0.463295 ATGAGCTCGGGTGCAGAATG 60.463 55.000 9.64 0.00 40.87 2.67
3397 4265 1.817099 GAGCTCGGGTGCAGAATGG 60.817 63.158 0.00 0.00 35.86 3.16
3398 4266 2.244117 GAGCTCGGGTGCAGAATGGA 62.244 60.000 0.00 0.00 35.86 3.41
3424 4292 2.143122 CGCTCTCTACTTGGTTGCAAA 58.857 47.619 0.00 0.00 0.00 3.68
3425 4293 2.744202 CGCTCTCTACTTGGTTGCAAAT 59.256 45.455 0.00 0.00 0.00 2.32
3429 4297 5.355350 GCTCTCTACTTGGTTGCAAATGTAT 59.645 40.000 0.00 0.00 0.00 2.29
3433 4301 4.519540 ACTTGGTTGCAAATGTATGGTC 57.480 40.909 0.00 0.00 0.00 4.02
3434 4302 4.151883 ACTTGGTTGCAAATGTATGGTCT 58.848 39.130 0.00 0.00 0.00 3.85
3477 4345 0.737715 GTCCAGAGCAAATCGTCGCT 60.738 55.000 0.00 0.00 42.42 4.93
3490 4358 2.366533 TCGTCGCTGGAGAAATAGAGT 58.633 47.619 0.00 0.00 0.00 3.24
3518 4386 1.310904 TAAAACCACACCGTGCTTCC 58.689 50.000 0.00 0.00 31.34 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 154 4.339748 TCACCTGCCAAACTAAATATGCA 58.660 39.130 0.00 0.00 0.00 3.96
248 265 5.297278 TCACGTAAATATACATTGGTTGGCC 59.703 40.000 0.00 0.00 32.02 5.36
278 296 6.071672 AGCATCAATATAGTACACGCAGAGAT 60.072 38.462 0.00 0.00 0.00 2.75
280 298 5.344396 CAGCATCAATATAGTACACGCAGAG 59.656 44.000 0.00 0.00 0.00 3.35
286 315 7.814587 TGATACTGCAGCATCAATATAGTACAC 59.185 37.037 24.38 0.00 0.00 2.90
360 406 5.583061 CAGCAACCGGTCTATAAAACACATA 59.417 40.000 8.04 0.00 0.00 2.29
535 602 8.802267 CAACTAATTGGGGTCTTCAATTAAGAA 58.198 33.333 9.54 0.00 42.71 2.52
537 604 8.122472 ACAACTAATTGGGGTCTTCAATTAAG 57.878 34.615 9.54 7.23 42.71 1.85
645 734 9.044646 TCCCATTCAATTAAGATTTCCAATTGA 57.955 29.630 7.12 11.18 43.40 2.57
652 741 8.854117 ACTATGCTCCCATTCAATTAAGATTTC 58.146 33.333 0.00 0.00 32.85 2.17
690 779 9.612066 TTGCTGACATCATGACATTAGTAATAA 57.388 29.630 0.00 0.00 0.00 1.40
691 780 9.783081 ATTGCTGACATCATGACATTAGTAATA 57.217 29.630 11.71 0.00 0.00 0.98
698 801 5.359860 ACATCATTGCTGACATCATGACATT 59.640 36.000 0.00 0.00 33.22 2.71
750 855 1.552792 TCATGCCCGTGTCTGTATGAA 59.447 47.619 0.00 0.00 31.88 2.57
760 865 1.742761 ACAGAAGAATCATGCCCGTG 58.257 50.000 0.00 0.00 0.00 4.94
790 895 1.839354 TGCAGCTGTCTGATTCCCATA 59.161 47.619 16.64 0.00 42.95 2.74
816 921 9.736023 GACGAGAATTAGCAAATCCAAAATAAT 57.264 29.630 0.00 0.00 0.00 1.28
817 922 8.956426 AGACGAGAATTAGCAAATCCAAAATAA 58.044 29.630 0.00 0.00 0.00 1.40
1002 1210 4.037327 GGAGTACTCTTATGTAACGGGGTC 59.963 50.000 21.88 0.00 0.00 4.46
1006 1214 4.497006 CGGTGGAGTACTCTTATGTAACGG 60.497 50.000 21.88 9.63 0.00 4.44
1561 2082 6.015010 AGCATGATCGATTAGCTAGTACCTTT 60.015 38.462 15.62 0.00 33.06 3.11
1628 2287 4.013267 AGTTCTGCAGAGCATACAAGTT 57.987 40.909 29.15 6.13 38.13 2.66
1708 2373 1.415659 CCAGGCGAGGAAGATCTTGAT 59.584 52.381 14.00 0.02 0.00 2.57
1783 2454 1.545706 AAGGAGGTGAAGAGGACGCC 61.546 60.000 0.00 0.00 38.09 5.68
1845 2516 0.037447 GATAGATGGGGCAGGGAAGC 59.963 60.000 0.00 0.00 0.00 3.86
1901 2572 1.878656 CTCGTCACGGGCCTTCTCTT 61.879 60.000 0.84 0.00 0.00 2.85
1902 2573 2.282958 TCGTCACGGGCCTTCTCT 60.283 61.111 0.84 0.00 0.00 3.10
1941 2615 4.742201 GAGTTCTCCGGCTGCGCA 62.742 66.667 10.98 10.98 0.00 6.09
2088 2762 4.147449 TCGCCGCACATCTCCCTG 62.147 66.667 0.00 0.00 0.00 4.45
2089 2763 4.148825 GTCGCCGCACATCTCCCT 62.149 66.667 0.00 0.00 0.00 4.20
2364 3038 2.686915 GTCCAAATCCATCAGCTTCCTG 59.313 50.000 0.00 0.00 40.54 3.86
2504 3178 0.591659 GACGTCCAGTTTTCCCTTGC 59.408 55.000 3.51 0.00 0.00 4.01
2506 3180 0.109913 GGGACGTCCAGTTTTCCCTT 59.890 55.000 34.40 0.00 37.91 3.95
2515 3189 1.344763 AGAACTTTCAGGGACGTCCAG 59.655 52.381 34.40 25.46 38.24 3.86
2520 3194 0.600255 ACGCAGAACTTTCAGGGACG 60.600 55.000 5.59 0.00 32.32 4.79
2524 3198 3.365364 GGAAATCACGCAGAACTTTCAGG 60.365 47.826 6.78 0.00 0.00 3.86
2555 3234 5.006165 GCGATTTTTCTATCACTGACTGGAG 59.994 44.000 0.00 0.00 0.00 3.86
2568 3247 5.066634 TGAACCACAAACAGCGATTTTTCTA 59.933 36.000 0.00 0.00 0.00 2.10
2577 3256 2.539274 CCATTTTGAACCACAAACAGCG 59.461 45.455 0.00 0.00 46.32 5.18
2680 3546 2.612972 GGATTTGTCTTCCTCTGACGCA 60.613 50.000 0.00 0.00 37.26 5.24
2685 3551 2.770164 ACCGGATTTGTCTTCCTCTG 57.230 50.000 9.46 0.00 0.00 3.35
2751 3617 6.943718 ACCGTGGAGTAATTATTTTCCTTCAA 59.056 34.615 12.21 0.00 0.00 2.69
2754 3620 5.650703 CCACCGTGGAGTAATTATTTTCCTT 59.349 40.000 12.68 0.00 40.96 3.36
2755 3621 5.190677 CCACCGTGGAGTAATTATTTTCCT 58.809 41.667 12.68 0.00 40.96 3.36
2762 3628 2.498481 CAGGACCACCGTGGAGTAATTA 59.502 50.000 24.80 0.00 40.96 1.40
2763 3629 1.278127 CAGGACCACCGTGGAGTAATT 59.722 52.381 24.80 0.00 40.96 1.40
2764 3630 0.902531 CAGGACCACCGTGGAGTAAT 59.097 55.000 24.80 0.27 40.96 1.89
2823 3689 1.737793 GTTTCTGGGTGATTGTAGGCG 59.262 52.381 0.00 0.00 0.00 5.52
2824 3690 2.790433 TGTTTCTGGGTGATTGTAGGC 58.210 47.619 0.00 0.00 0.00 3.93
2847 3713 3.688185 CCAAGCGCTATATGCATCTTCAT 59.312 43.478 12.05 0.00 43.06 2.57
2862 3728 1.273887 CGATCGTTGATCCAAGCGC 59.726 57.895 7.03 0.00 35.83 5.92
2863 3729 0.999406 AACGATCGTTGATCCAAGCG 59.001 50.000 31.27 0.00 35.83 4.68
2893 3759 6.313905 CCTATTCATCTACTTTCGTTGCACTT 59.686 38.462 0.00 0.00 0.00 3.16
2900 3766 6.459848 CGGTCTTCCTATTCATCTACTTTCGT 60.460 42.308 0.00 0.00 0.00 3.85
2903 3769 6.793505 ACGGTCTTCCTATTCATCTACTTT 57.206 37.500 0.00 0.00 0.00 2.66
2911 3777 6.421485 ACTCTAAGTACGGTCTTCCTATTCA 58.579 40.000 0.00 0.00 0.00 2.57
2914 3780 5.375773 GGACTCTAAGTACGGTCTTCCTAT 58.624 45.833 0.00 0.00 0.00 2.57
2919 3785 3.735720 AGGGACTCTAAGTACGGTCTT 57.264 47.619 0.00 0.00 26.61 3.01
2958 3826 2.287274 TTCGAGGGCGGTTCATGGA 61.287 57.895 0.00 0.00 38.28 3.41
2961 3829 2.125673 CGTTCGAGGGCGGTTCAT 60.126 61.111 0.00 0.00 38.28 2.57
2962 3830 4.367023 CCGTTCGAGGGCGGTTCA 62.367 66.667 14.35 0.00 42.73 3.18
2985 3853 2.015587 AGTAGAGAGGCCGTACTTTCG 58.984 52.381 0.00 0.00 0.00 3.46
2991 3859 0.463295 CGTCCAGTAGAGAGGCCGTA 60.463 60.000 0.00 0.00 0.00 4.02
2995 3863 2.409651 CGCGTCCAGTAGAGAGGC 59.590 66.667 0.00 0.00 40.76 4.70
2997 3865 0.814410 TAGCCGCGTCCAGTAGAGAG 60.814 60.000 4.92 0.00 0.00 3.20
2998 3866 0.393402 TTAGCCGCGTCCAGTAGAGA 60.393 55.000 4.92 0.00 0.00 3.10
2999 3867 0.669077 ATTAGCCGCGTCCAGTAGAG 59.331 55.000 4.92 0.00 0.00 2.43
3000 3868 0.666913 GATTAGCCGCGTCCAGTAGA 59.333 55.000 4.92 0.00 0.00 2.59
3001 3869 0.669077 AGATTAGCCGCGTCCAGTAG 59.331 55.000 4.92 0.00 0.00 2.57
3002 3870 0.384309 CAGATTAGCCGCGTCCAGTA 59.616 55.000 4.92 0.00 0.00 2.74
3003 3871 1.141881 CAGATTAGCCGCGTCCAGT 59.858 57.895 4.92 0.00 0.00 4.00
3004 3872 2.240500 GCAGATTAGCCGCGTCCAG 61.241 63.158 4.92 0.00 0.00 3.86
3005 3873 2.202878 GCAGATTAGCCGCGTCCA 60.203 61.111 4.92 0.00 0.00 4.02
3006 3874 2.202878 TGCAGATTAGCCGCGTCC 60.203 61.111 4.92 0.00 0.00 4.79
3007 3875 2.526120 GGTGCAGATTAGCCGCGTC 61.526 63.158 4.92 0.00 0.00 5.19
3008 3876 2.511600 GGTGCAGATTAGCCGCGT 60.512 61.111 4.92 0.00 0.00 6.01
3009 3877 3.272334 GGGTGCAGATTAGCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
3012 3880 1.889573 GCTCGGGTGCAGATTAGCC 60.890 63.158 0.00 0.00 0.00 3.93
3013 3881 0.878086 GAGCTCGGGTGCAGATTAGC 60.878 60.000 0.00 0.00 34.99 3.09
3014 3882 0.461548 TGAGCTCGGGTGCAGATTAG 59.538 55.000 9.64 0.00 34.99 1.73
3015 3883 1.123077 ATGAGCTCGGGTGCAGATTA 58.877 50.000 9.64 0.00 34.99 1.75
3016 3884 1.123077 TATGAGCTCGGGTGCAGATT 58.877 50.000 9.64 0.00 34.99 2.40
3017 3885 1.001746 CATATGAGCTCGGGTGCAGAT 59.998 52.381 9.64 0.00 34.99 2.90
3018 3886 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
3019 3887 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
3020 3888 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
3021 3889 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
3038 3906 3.689161 TGATTTTACTGTTCATGCGGGAG 59.311 43.478 0.00 0.00 0.00 4.30
3039 3907 3.680490 TGATTTTACTGTTCATGCGGGA 58.320 40.909 0.00 0.00 0.00 5.14
3040 3908 4.433186 TTGATTTTACTGTTCATGCGGG 57.567 40.909 0.00 0.00 0.00 6.13
3041 3909 6.761731 TTTTTGATTTTACTGTTCATGCGG 57.238 33.333 0.00 0.00 0.00 5.69
3098 3966 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
3099 3967 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
3100 3968 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
3101 3969 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
3102 3970 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
3103 3971 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
3104 3972 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
3105 3973 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
3106 3974 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
3107 3975 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
3108 3976 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
3109 3977 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
3110 3978 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
3111 3979 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
3112 3980 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
3113 3981 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
3114 3982 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
3115 3983 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
3116 3984 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
3117 3985 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
3118 3986 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
3119 3987 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
3120 3988 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
3121 3989 5.302823 AGAATTTTTGCAGGCACTTAGAACT 59.697 36.000 0.00 0.00 34.60 3.01
3122 3990 5.532557 AGAATTTTTGCAGGCACTTAGAAC 58.467 37.500 0.00 0.00 34.60 3.01
3123 3991 5.789643 AGAATTTTTGCAGGCACTTAGAA 57.210 34.783 0.00 0.00 34.60 2.10
3124 3992 5.301551 TGAAGAATTTTTGCAGGCACTTAGA 59.698 36.000 0.00 0.00 34.60 2.10
3125 3993 5.531634 TGAAGAATTTTTGCAGGCACTTAG 58.468 37.500 0.00 0.00 34.60 2.18
3126 3994 5.528043 TGAAGAATTTTTGCAGGCACTTA 57.472 34.783 0.00 0.00 34.60 2.24
3127 3995 4.405116 TGAAGAATTTTTGCAGGCACTT 57.595 36.364 0.00 0.00 34.60 3.16
3128 3996 4.039488 TCATGAAGAATTTTTGCAGGCACT 59.961 37.500 0.00 0.00 43.88 4.40
3129 3997 4.309099 TCATGAAGAATTTTTGCAGGCAC 58.691 39.130 0.00 0.00 0.00 5.01
3130 3998 4.603989 TCATGAAGAATTTTTGCAGGCA 57.396 36.364 0.00 0.00 0.00 4.75
3131 3999 5.927954 TTTCATGAAGAATTTTTGCAGGC 57.072 34.783 8.41 0.00 35.83 4.85
3132 4000 7.171848 TGTGATTTCATGAAGAATTTTTGCAGG 59.828 33.333 8.41 0.00 35.83 4.85
3133 4001 8.078959 TGTGATTTCATGAAGAATTTTTGCAG 57.921 30.769 8.41 0.00 35.83 4.41
3134 4002 8.610248 ATGTGATTTCATGAAGAATTTTTGCA 57.390 26.923 8.41 0.00 35.83 4.08
3135 4003 9.537848 GAATGTGATTTCATGAAGAATTTTTGC 57.462 29.630 8.41 0.00 35.83 3.68
3143 4011 8.742777 CCTTTTAGGAATGTGATTTCATGAAGA 58.257 33.333 8.41 0.72 37.67 2.87
3144 4012 7.490402 GCCTTTTAGGAATGTGATTTCATGAAG 59.510 37.037 8.41 0.00 37.67 3.02
3145 4013 7.322664 GCCTTTTAGGAATGTGATTTCATGAA 58.677 34.615 3.38 3.38 37.67 2.57
3146 4014 6.404623 CGCCTTTTAGGAATGTGATTTCATGA 60.405 38.462 0.00 0.00 37.67 3.07
3147 4015 5.745294 CGCCTTTTAGGAATGTGATTTCATG 59.255 40.000 0.00 0.00 37.67 3.07
3148 4016 5.418840 ACGCCTTTTAGGAATGTGATTTCAT 59.581 36.000 0.00 0.00 37.67 2.57
3149 4017 4.764823 ACGCCTTTTAGGAATGTGATTTCA 59.235 37.500 0.00 0.00 37.67 2.69
3150 4018 5.095490 CACGCCTTTTAGGAATGTGATTTC 58.905 41.667 0.00 0.00 37.67 2.17
3151 4019 4.082245 CCACGCCTTTTAGGAATGTGATTT 60.082 41.667 12.05 0.00 37.67 2.17
3152 4020 3.443681 CCACGCCTTTTAGGAATGTGATT 59.556 43.478 12.05 0.00 37.67 2.57
3153 4021 3.016736 CCACGCCTTTTAGGAATGTGAT 58.983 45.455 12.05 0.00 37.67 3.06
3154 4022 2.432444 CCACGCCTTTTAGGAATGTGA 58.568 47.619 12.05 0.00 37.67 3.58
3155 4023 1.135402 GCCACGCCTTTTAGGAATGTG 60.135 52.381 0.00 2.20 37.67 3.21
3156 4024 1.173913 GCCACGCCTTTTAGGAATGT 58.826 50.000 0.00 0.00 37.67 2.71
3157 4025 1.173043 TGCCACGCCTTTTAGGAATG 58.827 50.000 0.00 0.00 37.67 2.67
3158 4026 1.917872 TTGCCACGCCTTTTAGGAAT 58.082 45.000 0.00 0.00 37.67 3.01
3159 4027 1.693627 TTTGCCACGCCTTTTAGGAA 58.306 45.000 0.00 0.00 37.67 3.36
3160 4028 1.693627 TTTTGCCACGCCTTTTAGGA 58.306 45.000 0.00 0.00 37.67 2.94
3161 4029 2.517650 TTTTTGCCACGCCTTTTAGG 57.482 45.000 0.00 0.00 38.80 2.69
3181 4049 9.998106 TGAAAGTAGCTTTTTCAGAGTACTATT 57.002 29.630 17.30 0.00 39.05 1.73
3182 4050 9.998106 TTGAAAGTAGCTTTTTCAGAGTACTAT 57.002 29.630 19.21 0.00 43.22 2.12
3183 4051 9.826574 TTTGAAAGTAGCTTTTTCAGAGTACTA 57.173 29.630 19.21 6.79 43.22 1.82
3184 4052 8.613482 GTTTGAAAGTAGCTTTTTCAGAGTACT 58.387 33.333 19.21 0.00 43.22 2.73
3185 4053 7.583040 CGTTTGAAAGTAGCTTTTTCAGAGTAC 59.417 37.037 19.21 15.67 43.22 2.73
3186 4054 7.627340 CGTTTGAAAGTAGCTTTTTCAGAGTA 58.373 34.615 19.21 8.08 43.22 2.59
3187 4055 6.487103 CGTTTGAAAGTAGCTTTTTCAGAGT 58.513 36.000 19.21 0.00 43.22 3.24
3188 4056 5.396654 GCGTTTGAAAGTAGCTTTTTCAGAG 59.603 40.000 19.21 16.17 43.22 3.35
3189 4057 5.163703 TGCGTTTGAAAGTAGCTTTTTCAGA 60.164 36.000 19.21 15.01 43.22 3.27
3190 4058 5.034152 TGCGTTTGAAAGTAGCTTTTTCAG 58.966 37.500 19.21 12.77 43.22 3.02
3191 4059 4.987832 TGCGTTTGAAAGTAGCTTTTTCA 58.012 34.783 17.30 17.30 41.40 2.69
3192 4060 6.510746 AATGCGTTTGAAAGTAGCTTTTTC 57.489 33.333 13.56 13.56 33.49 2.29
3193 4061 6.902224 AAATGCGTTTGAAAGTAGCTTTTT 57.098 29.167 2.32 0.00 33.49 1.94
3194 4062 6.902224 AAAATGCGTTTGAAAGTAGCTTTT 57.098 29.167 4.29 0.00 36.97 2.27
3206 4074 2.219216 CCAGTGCTTCAAAATGCGTTTG 59.781 45.455 4.29 5.51 46.86 2.93
3207 4075 2.100584 TCCAGTGCTTCAAAATGCGTTT 59.899 40.909 0.00 0.00 0.00 3.60
3208 4076 1.680735 TCCAGTGCTTCAAAATGCGTT 59.319 42.857 0.00 0.00 0.00 4.84
3209 4077 1.317613 TCCAGTGCTTCAAAATGCGT 58.682 45.000 0.00 0.00 0.00 5.24
3210 4078 2.642139 ATCCAGTGCTTCAAAATGCG 57.358 45.000 0.00 0.00 0.00 4.73
3211 4079 4.060205 ACAAATCCAGTGCTTCAAAATGC 58.940 39.130 0.00 0.00 0.00 3.56
3212 4080 6.607735 AAACAAATCCAGTGCTTCAAAATG 57.392 33.333 0.00 0.00 0.00 2.32
3213 4081 7.628769 AAAAACAAATCCAGTGCTTCAAAAT 57.371 28.000 0.00 0.00 0.00 1.82
3235 4103 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
3236 4104 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
3237 4105 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
3238 4106 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
3239 4107 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
3240 4108 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
3241 4109 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
3242 4110 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
3243 4111 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
3244 4112 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
3245 4113 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
3246 4114 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
3247 4115 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
3248 4116 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
3249 4117 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
3250 4118 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
3251 4119 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
3252 4120 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
3253 4121 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
3254 4122 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
3255 4123 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
3256 4124 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
3257 4125 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
3258 4126 6.400303 CCTGCAAAAATTCGTCATGAAATCAC 60.400 38.462 0.00 0.00 40.71 3.06
3259 4127 5.634439 CCTGCAAAAATTCGTCATGAAATCA 59.366 36.000 0.00 0.00 40.71 2.57
3260 4128 5.445010 GCCTGCAAAAATTCGTCATGAAATC 60.445 40.000 0.00 0.00 40.71 2.17
3261 4129 4.389687 GCCTGCAAAAATTCGTCATGAAAT 59.610 37.500 0.00 0.00 40.71 2.17
3262 4130 3.740321 GCCTGCAAAAATTCGTCATGAAA 59.260 39.130 0.00 0.00 40.71 2.69
3263 4131 3.243670 TGCCTGCAAAAATTCGTCATGAA 60.244 39.130 0.00 0.00 41.81 2.57
3264 4132 2.295629 TGCCTGCAAAAATTCGTCATGA 59.704 40.909 0.00 0.00 0.00 3.07
3265 4133 2.409378 GTGCCTGCAAAAATTCGTCATG 59.591 45.455 0.00 0.00 0.00 3.07
3266 4134 2.297033 AGTGCCTGCAAAAATTCGTCAT 59.703 40.909 0.00 0.00 0.00 3.06
3267 4135 1.680735 AGTGCCTGCAAAAATTCGTCA 59.319 42.857 0.00 0.00 0.00 4.35
3268 4136 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
3269 4137 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
3270 4138 4.159377 TCTAAGTGCCTGCAAAAATTCG 57.841 40.909 0.00 0.00 0.00 3.34
3271 4139 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
3272 4140 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
3273 4141 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
3274 4142 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
3275 4143 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
3276 4144 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
3277 4145 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
3278 4146 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
3279 4147 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
3280 4148 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
3281 4149 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
3282 4150 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
3283 4151 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
3284 4152 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
3285 4153 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
3286 4154 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
3287 4155 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
3288 4156 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
3289 4157 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
3290 4158 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
3291 4159 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
3346 4214 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
3347 4215 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
3348 4216 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
3349 4217 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
3350 4218 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
3351 4219 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
3352 4220 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
3353 4221 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
3354 4222 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
3355 4223 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
3356 4224 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
3357 4225 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
3358 4226 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
3373 4241 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
3374 4242 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
3375 4243 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
3376 4244 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
3377 4245 0.463295 CATTCTGCACCCGAGCTCAT 60.463 55.000 15.40 0.00 34.99 2.90
3378 4246 1.078918 CATTCTGCACCCGAGCTCA 60.079 57.895 15.40 0.00 34.99 4.26
3379 4247 1.817099 CCATTCTGCACCCGAGCTC 60.817 63.158 2.73 2.73 34.99 4.09
3380 4248 2.270205 CCATTCTGCACCCGAGCT 59.730 61.111 0.00 0.00 34.99 4.09
3381 4249 2.109126 GTCCATTCTGCACCCGAGC 61.109 63.158 0.00 0.00 0.00 5.03
3382 4250 0.036010 AAGTCCATTCTGCACCCGAG 60.036 55.000 0.00 0.00 0.00 4.63
3383 4251 0.400213 AAAGTCCATTCTGCACCCGA 59.600 50.000 0.00 0.00 0.00 5.14
3384 4252 1.200020 GAAAAGTCCATTCTGCACCCG 59.800 52.381 0.00 0.00 0.00 5.28
3385 4253 1.200020 CGAAAAGTCCATTCTGCACCC 59.800 52.381 0.00 0.00 0.00 4.61
3386 4254 1.401539 GCGAAAAGTCCATTCTGCACC 60.402 52.381 0.00 0.00 0.00 5.01
3387 4255 1.537202 AGCGAAAAGTCCATTCTGCAC 59.463 47.619 0.00 0.00 32.58 4.57
3388 4256 1.806542 GAGCGAAAAGTCCATTCTGCA 59.193 47.619 0.00 0.00 32.58 4.41
3389 4257 2.079925 AGAGCGAAAAGTCCATTCTGC 58.920 47.619 0.00 0.00 0.00 4.26
3390 4258 3.594134 AGAGAGCGAAAAGTCCATTCTG 58.406 45.455 0.00 0.00 0.00 3.02
3391 4259 3.971245 AGAGAGCGAAAAGTCCATTCT 57.029 42.857 0.00 0.00 0.00 2.40
3392 4260 4.749976 AGTAGAGAGCGAAAAGTCCATTC 58.250 43.478 0.00 0.00 0.00 2.67
3393 4261 4.810191 AGTAGAGAGCGAAAAGTCCATT 57.190 40.909 0.00 0.00 0.00 3.16
3394 4262 4.499183 CAAGTAGAGAGCGAAAAGTCCAT 58.501 43.478 0.00 0.00 0.00 3.41
3395 4263 3.306088 CCAAGTAGAGAGCGAAAAGTCCA 60.306 47.826 0.00 0.00 0.00 4.02
3396 4264 3.254892 CCAAGTAGAGAGCGAAAAGTCC 58.745 50.000 0.00 0.00 0.00 3.85
3397 4265 3.915536 ACCAAGTAGAGAGCGAAAAGTC 58.084 45.455 0.00 0.00 0.00 3.01
3398 4266 4.058817 CAACCAAGTAGAGAGCGAAAAGT 58.941 43.478 0.00 0.00 0.00 2.66
3399 4267 3.120511 GCAACCAAGTAGAGAGCGAAAAG 60.121 47.826 0.00 0.00 0.00 2.27
3400 4268 2.806244 GCAACCAAGTAGAGAGCGAAAA 59.194 45.455 0.00 0.00 0.00 2.29
3401 4269 2.224185 TGCAACCAAGTAGAGAGCGAAA 60.224 45.455 0.00 0.00 0.00 3.46
3402 4270 1.343142 TGCAACCAAGTAGAGAGCGAA 59.657 47.619 0.00 0.00 0.00 4.70
3403 4271 0.966179 TGCAACCAAGTAGAGAGCGA 59.034 50.000 0.00 0.00 0.00 4.93
3404 4272 1.795768 TTGCAACCAAGTAGAGAGCG 58.204 50.000 0.00 0.00 0.00 5.03
3405 4273 3.503748 ACATTTGCAACCAAGTAGAGAGC 59.496 43.478 0.00 0.00 31.52 4.09
3424 4292 2.035961 CCGGATCGTGAAGACCATACAT 59.964 50.000 0.00 0.00 0.00 2.29
3425 4293 1.407618 CCGGATCGTGAAGACCATACA 59.592 52.381 0.00 0.00 0.00 2.29
3429 4297 2.225791 CTGCCGGATCGTGAAGACCA 62.226 60.000 5.05 0.00 0.00 4.02
3433 4301 3.257561 CGCTGCCGGATCGTGAAG 61.258 66.667 5.05 0.00 0.00 3.02
3477 4345 8.609617 TTTAATCTCCTCACTCTATTTCTCCA 57.390 34.615 0.00 0.00 0.00 3.86
3490 4358 3.071892 ACGGTGTGGTTTTAATCTCCTCA 59.928 43.478 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.