Multiple sequence alignment - TraesCS3B01G362500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G362500 chr3B 100.000 2483 0 0 1 2483 574267259 574264777 0.000000e+00 4586
1 TraesCS3B01G362500 chr3B 100.000 230 0 0 2839 3068 574264421 574264192 2.830000e-115 425
2 TraesCS3B01G362500 chr3D 90.198 1969 113 37 382 2295 438471304 438469361 0.000000e+00 2494
3 TraesCS3B01G362500 chr3D 94.545 385 20 1 1 385 438471717 438471334 7.320000e-166 593
4 TraesCS3B01G362500 chr3D 82.990 194 32 1 2875 3068 598081484 598081676 1.130000e-39 174
5 TraesCS3B01G362500 chr3D 87.931 116 10 3 2277 2392 438468001 438467890 1.920000e-27 134
6 TraesCS3B01G362500 chr3A 88.934 985 77 11 382 1341 577066517 577065540 0.000000e+00 1186
7 TraesCS3B01G362500 chr3A 88.364 911 50 22 1444 2336 577065544 577064672 0.000000e+00 1044
8 TraesCS3B01G362500 chr3A 95.584 385 16 1 1 385 577066930 577066547 1.560000e-172 616
9 TraesCS3B01G362500 chr6D 88.776 196 21 1 2873 3068 411871523 411871329 3.950000e-59 239
10 TraesCS3B01G362500 chr6D 84.530 181 25 3 2889 3068 226798454 226798632 3.140000e-40 176
11 TraesCS3B01G362500 chr7D 87.629 194 22 2 2875 3068 421221522 421221331 1.110000e-54 224
12 TraesCS3B01G362500 chr6A 85.714 189 25 2 2875 3062 516158049 516157862 6.710000e-47 198
13 TraesCS3B01G362500 chr2D 82.500 200 34 1 2869 3068 373091627 373091825 1.130000e-39 174
14 TraesCS3B01G362500 chr4A 84.024 169 24 3 2875 3042 530763178 530763012 3.170000e-35 159
15 TraesCS3B01G362500 chr2B 81.726 197 30 5 2875 3068 134383905 134383712 3.170000e-35 159
16 TraesCS3B01G362500 chr2A 79.293 198 36 4 2872 3068 719567423 719567230 1.920000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G362500 chr3B 574264192 574267259 3067 True 2505.500000 4586 100.000000 1 3068 2 chr3B.!!$R1 3067
1 TraesCS3B01G362500 chr3D 438467890 438471717 3827 True 1073.666667 2494 90.891333 1 2392 3 chr3D.!!$R1 2391
2 TraesCS3B01G362500 chr3A 577064672 577066930 2258 True 948.666667 1186 90.960667 1 2336 3 chr3A.!!$R1 2335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 1.406539 GGCGGTAGGATGAACTCGTAA 59.593 52.381 0.00 0.0 0.00 3.18 F
1349 1423 0.109153 ATGACAAGGTGAGCACAGCA 59.891 50.000 15.65 0.0 45.57 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 2037 0.176910 TTGAACGTGCCAGAGTGACA 59.823 50.0 0.00 0.0 0.00 3.58 R
2931 4526 0.179045 CCGGCTACAAGCTTGGCTAT 60.179 55.0 29.18 11.7 41.99 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
298 299 1.406539 GGCGGTAGGATGAACTCGTAA 59.593 52.381 0.00 0.00 0.00 3.18
304 305 4.401837 GGTAGGATGAACTCGTAAGGTTCT 59.598 45.833 7.85 0.00 43.43 3.01
325 326 6.688637 TCTACATTGCCTGAATTTCATGAG 57.311 37.500 5.93 0.00 0.00 2.90
333 334 4.387862 GCCTGAATTTCATGAGCAAAACTG 59.612 41.667 5.93 0.00 0.00 3.16
334 335 4.927425 CCTGAATTTCATGAGCAAAACTGG 59.073 41.667 0.00 0.00 0.00 4.00
345 346 2.157738 GCAAAACTGGACTCAGCTGAT 58.842 47.619 18.63 7.64 44.59 2.90
346 347 2.095364 GCAAAACTGGACTCAGCTGATG 60.095 50.000 18.63 13.72 44.59 3.07
351 352 2.836372 ACTGGACTCAGCTGATGAATCA 59.164 45.455 18.63 10.45 44.59 2.57
599 633 2.355837 TGACTGACAACCGCGAGC 60.356 61.111 8.23 0.00 0.00 5.03
668 702 3.165160 AACAGAGGAGCGCGTGGTT 62.165 57.895 8.43 0.00 0.00 3.67
674 708 3.177249 GAGCGCGTGGTTACCGAC 61.177 66.667 8.43 0.00 0.00 4.79
819 860 3.513912 TCCAGACGAGTGTGATATTTGGT 59.486 43.478 1.70 0.00 0.00 3.67
822 863 4.800993 CAGACGAGTGTGATATTTGGTCTC 59.199 45.833 0.00 0.00 31.64 3.36
915 972 4.021925 GCGCCCCCTCAGTCAGTT 62.022 66.667 0.00 0.00 0.00 3.16
1133 1197 3.782443 CCCCGGCCACTCTGGTAC 61.782 72.222 2.24 0.00 40.46 3.34
1161 1235 1.085091 CTGCTCCATGCTCTTGTGAC 58.915 55.000 0.00 0.00 43.37 3.67
1226 1300 6.536582 ACAAACTGATCTTGTTATGATCTCCG 59.463 38.462 5.38 0.00 40.51 4.63
1227 1301 5.207110 ACTGATCTTGTTATGATCTCCGG 57.793 43.478 0.00 0.00 40.51 5.14
1231 1305 4.060038 TCTTGTTATGATCTCCGGAAGC 57.940 45.455 5.23 0.00 0.00 3.86
1253 1327 0.674895 AAGCTGTGCTGGGATCGAAC 60.675 55.000 0.00 0.00 39.62 3.95
1255 1329 2.434185 TGTGCTGGGATCGAACGC 60.434 61.111 2.59 2.59 0.00 4.84
1336 1410 0.109532 TCCAAAGCCACGGATGACAA 59.890 50.000 0.00 0.00 0.00 3.18
1337 1411 0.523072 CCAAAGCCACGGATGACAAG 59.477 55.000 0.00 0.00 0.00 3.16
1338 1412 0.523072 CAAAGCCACGGATGACAAGG 59.477 55.000 0.00 0.00 0.00 3.61
1339 1413 0.110486 AAAGCCACGGATGACAAGGT 59.890 50.000 0.00 0.00 0.00 3.50
1340 1414 0.606401 AAGCCACGGATGACAAGGTG 60.606 55.000 0.00 0.00 0.00 4.00
1341 1415 1.003839 GCCACGGATGACAAGGTGA 60.004 57.895 5.70 0.00 32.23 4.02
1342 1416 1.021390 GCCACGGATGACAAGGTGAG 61.021 60.000 5.70 0.00 32.23 3.51
1343 1417 1.021390 CCACGGATGACAAGGTGAGC 61.021 60.000 5.70 0.00 32.23 4.26
1344 1418 0.320683 CACGGATGACAAGGTGAGCA 60.321 55.000 0.00 0.00 32.23 4.26
1345 1419 0.320771 ACGGATGACAAGGTGAGCAC 60.321 55.000 0.00 0.00 0.00 4.40
1346 1420 0.320683 CGGATGACAAGGTGAGCACA 60.321 55.000 2.75 0.00 0.00 4.57
1347 1421 1.446907 GGATGACAAGGTGAGCACAG 58.553 55.000 2.75 0.00 0.00 3.66
1348 1422 0.801251 GATGACAAGGTGAGCACAGC 59.199 55.000 5.09 5.09 43.79 4.40
1349 1423 0.109153 ATGACAAGGTGAGCACAGCA 59.891 50.000 15.65 0.00 45.57 4.41
1350 1424 0.109153 TGACAAGGTGAGCACAGCAT 59.891 50.000 15.65 0.18 45.57 3.79
1351 1425 0.520404 GACAAGGTGAGCACAGCATG 59.480 55.000 15.65 15.47 45.57 4.06
1368 1442 4.223964 GCGCTGCGTCCCGAAATC 62.224 66.667 24.04 0.00 0.00 2.17
1369 1443 3.564027 CGCTGCGTCCCGAAATCC 61.564 66.667 14.93 0.00 0.00 3.01
1370 1444 2.125106 GCTGCGTCCCGAAATCCT 60.125 61.111 0.00 0.00 0.00 3.24
1371 1445 2.174319 GCTGCGTCCCGAAATCCTC 61.174 63.158 0.00 0.00 0.00 3.71
1379 1453 3.999051 CGAAATCCTCGGCGACTC 58.001 61.111 4.99 0.00 44.20 3.36
1380 1454 1.939785 CGAAATCCTCGGCGACTCG 60.940 63.158 4.99 5.87 44.20 4.18
1381 1455 1.139095 GAAATCCTCGGCGACTCGT 59.861 57.895 4.99 0.00 0.00 4.18
1382 1456 0.458025 GAAATCCTCGGCGACTCGTT 60.458 55.000 4.99 0.00 0.00 3.85
1383 1457 0.458025 AAATCCTCGGCGACTCGTTC 60.458 55.000 4.99 0.00 0.00 3.95
1391 1465 2.506438 CGACTCGTTCGGCCTTCC 60.506 66.667 0.00 0.00 44.60 3.46
1392 1466 2.654877 GACTCGTTCGGCCTTCCA 59.345 61.111 0.00 0.00 0.00 3.53
1393 1467 1.737008 GACTCGTTCGGCCTTCCAC 60.737 63.158 0.00 0.00 0.00 4.02
1394 1468 2.809601 CTCGTTCGGCCTTCCACG 60.810 66.667 0.00 3.73 34.26 4.94
1395 1469 3.277211 CTCGTTCGGCCTTCCACGA 62.277 63.158 12.99 12.99 38.12 4.35
1396 1470 3.110178 CGTTCGGCCTTCCACGAC 61.110 66.667 0.00 0.00 39.04 4.34
1397 1471 2.029964 GTTCGGCCTTCCACGACA 59.970 61.111 0.00 0.00 39.04 4.35
1398 1472 2.029964 TTCGGCCTTCCACGACAC 59.970 61.111 0.00 0.00 39.04 3.67
1399 1473 3.851845 TTCGGCCTTCCACGACACG 62.852 63.158 0.00 0.00 39.04 4.49
1401 1475 4.681978 GGCCTTCCACGACACGCT 62.682 66.667 0.00 0.00 0.00 5.07
1402 1476 3.414700 GCCTTCCACGACACGCTG 61.415 66.667 0.00 0.00 0.00 5.18
1403 1477 2.738521 CCTTCCACGACACGCTGG 60.739 66.667 0.00 0.00 32.42 4.85
1404 1478 2.338620 CTTCCACGACACGCTGGA 59.661 61.111 0.00 0.00 36.12 3.86
1405 1479 1.734477 CTTCCACGACACGCTGGAG 60.734 63.158 12.23 6.66 37.92 3.86
1406 1480 3.858868 TTCCACGACACGCTGGAGC 62.859 63.158 12.23 0.00 37.92 4.70
1407 1481 4.363990 CCACGACACGCTGGAGCT 62.364 66.667 0.00 0.00 39.32 4.09
1408 1482 2.566529 CACGACACGCTGGAGCTA 59.433 61.111 0.00 0.00 39.32 3.32
1409 1483 1.080772 CACGACACGCTGGAGCTAA 60.081 57.895 0.00 0.00 39.32 3.09
1410 1484 1.080705 ACGACACGCTGGAGCTAAC 60.081 57.895 0.00 0.00 39.32 2.34
1411 1485 1.805945 CGACACGCTGGAGCTAACC 60.806 63.158 0.00 0.00 39.32 2.85
1412 1486 1.292223 GACACGCTGGAGCTAACCA 59.708 57.895 0.00 0.00 39.32 3.67
1418 1492 4.050313 TGGAGCTAACCAGGCGAT 57.950 55.556 0.00 0.00 34.77 4.58
1419 1493 2.296920 TGGAGCTAACCAGGCGATT 58.703 52.632 0.00 0.00 34.77 3.34
1420 1494 0.178068 TGGAGCTAACCAGGCGATTC 59.822 55.000 0.00 0.00 34.77 2.52
1421 1495 0.876342 GGAGCTAACCAGGCGATTCG 60.876 60.000 0.62 0.62 34.52 3.34
1504 1697 4.436998 GTCGGCGTCACCCTCCTG 62.437 72.222 6.85 0.00 33.26 3.86
1556 1750 5.420739 GTGACCTCCTCTTCATTTCTCTAGT 59.579 44.000 0.00 0.00 0.00 2.57
1557 1751 6.603997 GTGACCTCCTCTTCATTTCTCTAGTA 59.396 42.308 0.00 0.00 0.00 1.82
1558 1752 6.831353 TGACCTCCTCTTCATTTCTCTAGTAG 59.169 42.308 0.00 0.00 0.00 2.57
1564 1758 7.819900 TCCTCTTCATTTCTCTAGTAGCAAAAC 59.180 37.037 0.00 0.00 0.00 2.43
1574 1768 3.835790 TAGCAAAACCCGGCAGCGT 62.836 57.895 0.00 0.00 0.00 5.07
1578 1772 3.469863 AAAACCCGGCAGCGTCTCA 62.470 57.895 0.00 0.00 0.00 3.27
1605 1799 3.311048 GCCATCGATGAAGAAGAAGAACC 59.689 47.826 26.86 0.00 0.00 3.62
1606 1800 3.873952 CCATCGATGAAGAAGAAGAACCC 59.126 47.826 26.86 0.00 0.00 4.11
1617 1811 4.575236 AGAAGAAGAACCCGTCTGTTTTTC 59.425 41.667 0.00 0.00 38.78 2.29
1641 1840 2.816087 CTGAACCTGATCACAAACCCTG 59.184 50.000 0.00 0.00 0.00 4.45
1643 1842 3.222603 GAACCTGATCACAAACCCTGTT 58.777 45.455 0.00 0.00 35.47 3.16
1853 2052 1.745232 TTTTTGTCACTCTGGCACGT 58.255 45.000 0.00 0.00 28.02 4.49
1854 2053 1.745232 TTTTGTCACTCTGGCACGTT 58.255 45.000 0.00 0.00 28.02 3.99
1855 2054 1.295792 TTTGTCACTCTGGCACGTTC 58.704 50.000 0.00 0.00 28.02 3.95
1856 2055 0.176910 TTGTCACTCTGGCACGTTCA 59.823 50.000 0.00 0.00 28.02 3.18
1859 2058 0.464036 TCACTCTGGCACGTTCAACT 59.536 50.000 0.00 0.00 0.00 3.16
1860 2059 0.583438 CACTCTGGCACGTTCAACTG 59.417 55.000 0.00 0.00 0.00 3.16
1861 2060 0.178068 ACTCTGGCACGTTCAACTGT 59.822 50.000 0.00 0.00 0.00 3.55
1863 2062 2.037251 ACTCTGGCACGTTCAACTGTAT 59.963 45.455 0.00 0.00 0.00 2.29
1865 2064 0.871722 TGGCACGTTCAACTGTATGC 59.128 50.000 0.00 0.00 0.00 3.14
1866 2065 0.871722 GGCACGTTCAACTGTATGCA 59.128 50.000 0.00 0.00 34.73 3.96
1867 2066 1.468520 GGCACGTTCAACTGTATGCAT 59.531 47.619 3.79 3.79 34.73 3.96
1871 2070 4.553429 GCACGTTCAACTGTATGCATAAAC 59.447 41.667 8.28 7.26 33.27 2.01
1878 2077 7.132694 TCAACTGTATGCATAAACTTGTGAG 57.867 36.000 8.28 0.00 0.00 3.51
1883 2082 6.898041 TGTATGCATAAACTTGTGAGTTGTC 58.102 36.000 8.28 0.00 45.18 3.18
2022 2223 1.075896 GACGAGGAGGGATCAGGGT 60.076 63.158 0.00 0.00 0.00 4.34
2042 2243 4.141390 GGGTATCACCATCAACAGGAAGAT 60.141 45.833 0.00 0.00 41.02 2.40
2061 2262 0.252421 TGGAGGATCAGACCACTGCT 60.252 55.000 0.00 0.00 43.17 4.24
2119 2325 3.961408 CCCAGTACACTGTTAGGATAGCT 59.039 47.826 8.48 0.00 42.27 3.32
2139 2345 4.022589 AGCTTTGCATCGATTGATTATGGG 60.023 41.667 0.00 0.00 30.49 4.00
2225 2431 5.128205 TGAGTTATACTCCGATCTCCGAAA 58.872 41.667 4.52 0.00 44.44 3.46
2271 2488 6.292649 GGATGAACGCGATACATAAATCAACA 60.293 38.462 15.93 0.00 0.00 3.33
2287 3882 9.814899 ATAAATCAACATGACAACAAAACTCAA 57.185 25.926 0.00 0.00 0.00 3.02
2296 3891 5.570973 TGACAACAAAACTCAAACATTGTCG 59.429 36.000 9.03 0.00 44.64 4.35
2346 3941 4.324267 ACCAGCACCACTATGTAGAAAAC 58.676 43.478 0.00 0.00 0.00 2.43
2349 3944 4.003648 AGCACCACTATGTAGAAAACTGC 58.996 43.478 0.00 0.00 0.00 4.40
2354 3949 6.818644 CACCACTATGTAGAAAACTGCTGTAT 59.181 38.462 0.00 0.00 0.00 2.29
2355 3950 7.979537 CACCACTATGTAGAAAACTGCTGTATA 59.020 37.037 0.00 0.00 0.00 1.47
2356 3951 8.705594 ACCACTATGTAGAAAACTGCTGTATAT 58.294 33.333 0.00 0.00 0.00 0.86
2386 3981 1.110442 CTGGCTCCGAGAGATCACTT 58.890 55.000 0.00 0.00 0.00 3.16
2387 3982 2.302260 CTGGCTCCGAGAGATCACTTA 58.698 52.381 0.00 0.00 0.00 2.24
2392 3987 4.321378 GGCTCCGAGAGATCACTTAATACC 60.321 50.000 0.00 0.00 0.00 2.73
2393 3988 4.321378 GCTCCGAGAGATCACTTAATACCC 60.321 50.000 0.00 0.00 0.00 3.69
2394 3989 3.819337 TCCGAGAGATCACTTAATACCCG 59.181 47.826 0.00 0.00 0.00 5.28
2395 3990 3.819337 CCGAGAGATCACTTAATACCCGA 59.181 47.826 0.00 0.00 0.00 5.14
2396 3991 4.083217 CCGAGAGATCACTTAATACCCGAG 60.083 50.000 0.00 0.00 0.00 4.63
2397 3992 4.614078 CGAGAGATCACTTAATACCCGAGC 60.614 50.000 0.00 0.00 0.00 5.03
2398 3993 4.475345 AGAGATCACTTAATACCCGAGCT 58.525 43.478 0.00 0.00 0.00 4.09
2399 3994 4.896482 AGAGATCACTTAATACCCGAGCTT 59.104 41.667 0.00 0.00 0.00 3.74
2400 3995 5.364157 AGAGATCACTTAATACCCGAGCTTT 59.636 40.000 0.00 0.00 0.00 3.51
2401 3996 5.360591 AGATCACTTAATACCCGAGCTTTG 58.639 41.667 0.00 0.00 0.00 2.77
2402 3997 3.869065 TCACTTAATACCCGAGCTTTGG 58.131 45.455 1.14 1.14 0.00 3.28
2403 3998 3.262405 TCACTTAATACCCGAGCTTTGGT 59.738 43.478 12.21 12.21 38.69 3.67
2404 3999 4.467082 TCACTTAATACCCGAGCTTTGGTA 59.533 41.667 15.31 15.31 41.17 3.25
2405 4000 4.809426 CACTTAATACCCGAGCTTTGGTAG 59.191 45.833 17.26 10.13 40.30 3.18
2406 4001 4.713321 ACTTAATACCCGAGCTTTGGTAGA 59.287 41.667 17.26 8.10 40.30 2.59
2407 4002 3.538634 AATACCCGAGCTTTGGTAGAC 57.461 47.619 17.26 0.00 40.30 2.59
2408 4003 1.927487 TACCCGAGCTTTGGTAGACA 58.073 50.000 10.40 0.00 36.04 3.41
2409 4004 1.276622 ACCCGAGCTTTGGTAGACAT 58.723 50.000 6.33 0.00 31.61 3.06
2410 4005 2.463752 ACCCGAGCTTTGGTAGACATA 58.536 47.619 6.33 0.00 31.61 2.29
2411 4006 2.167900 ACCCGAGCTTTGGTAGACATAC 59.832 50.000 6.33 0.00 31.61 2.39
2412 4007 2.431057 CCCGAGCTTTGGTAGACATACT 59.569 50.000 5.35 0.00 32.12 2.12
2413 4008 3.118738 CCCGAGCTTTGGTAGACATACTT 60.119 47.826 5.35 0.00 32.12 2.24
2414 4009 4.098960 CCCGAGCTTTGGTAGACATACTTA 59.901 45.833 5.35 0.00 32.12 2.24
2415 4010 5.394883 CCCGAGCTTTGGTAGACATACTTAA 60.395 44.000 5.35 0.00 32.12 1.85
2416 4011 6.103997 CCGAGCTTTGGTAGACATACTTAAA 58.896 40.000 0.00 0.00 32.12 1.52
2417 4012 6.035758 CCGAGCTTTGGTAGACATACTTAAAC 59.964 42.308 0.00 0.00 32.12 2.01
2418 4013 6.588756 CGAGCTTTGGTAGACATACTTAAACA 59.411 38.462 0.00 0.00 32.12 2.83
2419 4014 7.277981 CGAGCTTTGGTAGACATACTTAAACAT 59.722 37.037 0.00 0.00 32.12 2.71
2420 4015 8.863872 AGCTTTGGTAGACATACTTAAACATT 57.136 30.769 0.00 0.00 32.12 2.71
2421 4016 8.730680 AGCTTTGGTAGACATACTTAAACATTG 58.269 33.333 0.00 0.00 32.12 2.82
2422 4017 8.512138 GCTTTGGTAGACATACTTAAACATTGT 58.488 33.333 0.00 0.00 32.12 2.71
2424 4019 9.562408 TTTGGTAGACATACTTAAACATTGTCA 57.438 29.630 4.42 0.00 39.27 3.58
2425 4020 9.562408 TTGGTAGACATACTTAAACATTGTCAA 57.438 29.630 4.42 0.00 39.27 3.18
2426 4021 9.214957 TGGTAGACATACTTAAACATTGTCAAG 57.785 33.333 8.72 8.72 39.27 3.02
2427 4022 9.216117 GGTAGACATACTTAAACATTGTCAAGT 57.784 33.333 16.47 16.47 39.27 3.16
2436 4031 9.841295 ACTTAAACATTGTCAAGTAACTTAGGA 57.159 29.630 12.59 0.00 29.67 2.94
2439 4034 6.780706 ACATTGTCAAGTAACTTAGGAACG 57.219 37.500 0.00 0.00 0.00 3.95
2440 4035 5.699458 ACATTGTCAAGTAACTTAGGAACGG 59.301 40.000 0.00 0.00 0.00 4.44
2441 4036 4.261578 TGTCAAGTAACTTAGGAACGGG 57.738 45.455 0.00 0.00 0.00 5.28
2442 4037 3.896888 TGTCAAGTAACTTAGGAACGGGA 59.103 43.478 0.00 0.00 0.00 5.14
2443 4038 4.240888 GTCAAGTAACTTAGGAACGGGAC 58.759 47.826 0.00 0.00 0.00 4.46
2456 4051 2.430367 GGGACGACTTGGCCTGTT 59.570 61.111 3.32 0.00 0.00 3.16
2457 4052 1.228154 GGGACGACTTGGCCTGTTT 60.228 57.895 3.32 0.00 0.00 2.83
2458 4053 0.822121 GGGACGACTTGGCCTGTTTT 60.822 55.000 3.32 0.00 0.00 2.43
2459 4054 0.310854 GGACGACTTGGCCTGTTTTG 59.689 55.000 3.32 0.54 0.00 2.44
2460 4055 0.310854 GACGACTTGGCCTGTTTTGG 59.689 55.000 3.32 0.00 0.00 3.28
2461 4056 0.395173 ACGACTTGGCCTGTTTTGGT 60.395 50.000 3.32 0.00 0.00 3.67
2462 4057 0.744281 CGACTTGGCCTGTTTTGGTT 59.256 50.000 3.32 0.00 0.00 3.67
2463 4058 1.535860 CGACTTGGCCTGTTTTGGTTG 60.536 52.381 3.32 0.00 0.00 3.77
2464 4059 0.829990 ACTTGGCCTGTTTTGGTTGG 59.170 50.000 3.32 0.00 0.00 3.77
2465 4060 0.829990 CTTGGCCTGTTTTGGTTGGT 59.170 50.000 3.32 0.00 0.00 3.67
2466 4061 1.209261 CTTGGCCTGTTTTGGTTGGTT 59.791 47.619 3.32 0.00 0.00 3.67
2467 4062 0.539051 TGGCCTGTTTTGGTTGGTTG 59.461 50.000 3.32 0.00 0.00 3.77
2468 4063 0.179059 GGCCTGTTTTGGTTGGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
2469 4064 0.827368 GCCTGTTTTGGTTGGTTGGA 59.173 50.000 0.00 0.00 0.00 3.53
2470 4065 1.208293 GCCTGTTTTGGTTGGTTGGAA 59.792 47.619 0.00 0.00 0.00 3.53
2471 4066 2.741553 GCCTGTTTTGGTTGGTTGGAAG 60.742 50.000 0.00 0.00 0.00 3.46
2472 4067 2.499693 CCTGTTTTGGTTGGTTGGAAGT 59.500 45.455 0.00 0.00 0.00 3.01
2473 4068 3.055458 CCTGTTTTGGTTGGTTGGAAGTT 60.055 43.478 0.00 0.00 0.00 2.66
2474 4069 4.160626 CCTGTTTTGGTTGGTTGGAAGTTA 59.839 41.667 0.00 0.00 0.00 2.24
2475 4070 5.337652 CCTGTTTTGGTTGGTTGGAAGTTAA 60.338 40.000 0.00 0.00 0.00 2.01
2476 4071 5.725362 TGTTTTGGTTGGTTGGAAGTTAAG 58.275 37.500 0.00 0.00 0.00 1.85
2477 4072 5.480772 TGTTTTGGTTGGTTGGAAGTTAAGA 59.519 36.000 0.00 0.00 0.00 2.10
2478 4073 6.014499 TGTTTTGGTTGGTTGGAAGTTAAGAA 60.014 34.615 0.00 0.00 0.00 2.52
2479 4074 5.845391 TTGGTTGGTTGGAAGTTAAGAAG 57.155 39.130 0.00 0.00 0.00 2.85
2480 4075 4.211920 TGGTTGGTTGGAAGTTAAGAAGG 58.788 43.478 0.00 0.00 0.00 3.46
2481 4076 3.005472 GGTTGGTTGGAAGTTAAGAAGGC 59.995 47.826 0.00 0.00 0.00 4.35
2482 4077 3.876309 TGGTTGGAAGTTAAGAAGGCT 57.124 42.857 0.00 0.00 0.00 4.58
2856 4451 2.528378 ACCTACCGGTGCAAGGGT 60.528 61.111 22.98 16.47 43.51 4.34
2857 4452 2.267961 CCTACCGGTGCAAGGGTC 59.732 66.667 19.93 0.00 37.75 4.46
2858 4453 2.589157 CCTACCGGTGCAAGGGTCA 61.589 63.158 19.93 0.00 37.75 4.02
2859 4454 1.373435 CTACCGGTGCAAGGGTCAA 59.627 57.895 19.93 0.00 37.75 3.18
2860 4455 0.673644 CTACCGGTGCAAGGGTCAAG 60.674 60.000 19.93 0.00 37.75 3.02
2861 4456 2.119484 TACCGGTGCAAGGGTCAAGG 62.119 60.000 19.93 0.00 37.75 3.61
2862 4457 2.429930 CGGTGCAAGGGTCAAGGA 59.570 61.111 0.00 0.00 0.00 3.36
2863 4458 1.966451 CGGTGCAAGGGTCAAGGAC 60.966 63.158 0.00 0.00 0.00 3.85
2877 4472 5.004922 GTCAAGGACCTGACATCTAAGAG 57.995 47.826 15.25 0.00 44.32 2.85
2878 4473 3.449018 TCAAGGACCTGACATCTAAGAGC 59.551 47.826 0.00 0.00 0.00 4.09
2879 4474 3.107402 AGGACCTGACATCTAAGAGCA 57.893 47.619 0.00 0.00 0.00 4.26
2880 4475 3.652055 AGGACCTGACATCTAAGAGCAT 58.348 45.455 0.00 0.00 0.00 3.79
2881 4476 3.387374 AGGACCTGACATCTAAGAGCATG 59.613 47.826 0.00 0.00 0.00 4.06
2882 4477 3.494048 GGACCTGACATCTAAGAGCATGG 60.494 52.174 0.00 0.00 0.00 3.66
2883 4478 3.110705 ACCTGACATCTAAGAGCATGGT 58.889 45.455 0.00 0.00 0.00 3.55
2884 4479 3.521126 ACCTGACATCTAAGAGCATGGTT 59.479 43.478 0.00 0.00 0.00 3.67
2885 4480 4.716784 ACCTGACATCTAAGAGCATGGTTA 59.283 41.667 0.00 0.00 0.00 2.85
2886 4481 5.189736 ACCTGACATCTAAGAGCATGGTTAA 59.810 40.000 0.00 0.00 0.00 2.01
2887 4482 6.126652 ACCTGACATCTAAGAGCATGGTTAAT 60.127 38.462 0.00 0.00 0.00 1.40
2888 4483 7.071196 ACCTGACATCTAAGAGCATGGTTAATA 59.929 37.037 0.00 0.00 0.00 0.98
2889 4484 7.601886 CCTGACATCTAAGAGCATGGTTAATAG 59.398 40.741 0.00 2.79 0.00 1.73
2890 4485 8.023021 TGACATCTAAGAGCATGGTTAATAGT 57.977 34.615 0.00 0.00 0.00 2.12
2891 4486 9.143155 TGACATCTAAGAGCATGGTTAATAGTA 57.857 33.333 0.00 0.00 0.00 1.82
2892 4487 9.413048 GACATCTAAGAGCATGGTTAATAGTAC 57.587 37.037 0.00 0.00 0.00 2.73
2893 4488 8.924303 ACATCTAAGAGCATGGTTAATAGTACA 58.076 33.333 0.00 0.00 0.00 2.90
2894 4489 9.764363 CATCTAAGAGCATGGTTAATAGTACAA 57.236 33.333 0.00 0.00 0.00 2.41
2895 4490 9.765795 ATCTAAGAGCATGGTTAATAGTACAAC 57.234 33.333 0.00 0.00 0.00 3.32
2896 4491 8.202137 TCTAAGAGCATGGTTAATAGTACAACC 58.798 37.037 0.00 6.00 43.78 3.77
2904 4499 6.604735 GGTTAATAGTACAACCAGCTGATG 57.395 41.667 17.39 16.14 43.13 3.07
2921 4516 5.745514 GCTGATGGCTATATGAATATTGCG 58.254 41.667 9.57 0.00 40.69 4.85
2922 4517 5.525012 GCTGATGGCTATATGAATATTGCGA 59.475 40.000 9.57 7.11 40.69 5.10
2923 4518 6.204301 GCTGATGGCTATATGAATATTGCGAT 59.796 38.462 11.76 11.76 40.42 4.58
2924 4519 7.486802 TGATGGCTATATGAATATTGCGATG 57.513 36.000 15.10 0.00 38.91 3.84
2925 4520 7.049754 TGATGGCTATATGAATATTGCGATGT 58.950 34.615 15.10 0.00 38.91 3.06
2926 4521 6.908870 TGGCTATATGAATATTGCGATGTC 57.091 37.500 9.57 0.00 40.69 3.06
2927 4522 6.643388 TGGCTATATGAATATTGCGATGTCT 58.357 36.000 9.57 0.00 40.69 3.41
2928 4523 7.105588 TGGCTATATGAATATTGCGATGTCTT 58.894 34.615 9.57 0.00 40.69 3.01
2929 4524 7.278646 TGGCTATATGAATATTGCGATGTCTTC 59.721 37.037 9.57 0.00 40.69 2.87
2930 4525 7.493971 GGCTATATGAATATTGCGATGTCTTCT 59.506 37.037 9.57 0.00 40.69 2.85
2931 4526 9.521503 GCTATATGAATATTGCGATGTCTTCTA 57.478 33.333 0.00 0.00 33.31 2.10
2935 4530 7.818493 TGAATATTGCGATGTCTTCTATAGC 57.182 36.000 0.00 0.00 0.00 2.97
2936 4531 6.813649 TGAATATTGCGATGTCTTCTATAGCC 59.186 38.462 0.00 0.00 0.00 3.93
2937 4532 4.607293 ATTGCGATGTCTTCTATAGCCA 57.393 40.909 0.00 0.00 0.00 4.75
2938 4533 4.400529 TTGCGATGTCTTCTATAGCCAA 57.599 40.909 0.00 0.00 0.00 4.52
2939 4534 3.982475 TGCGATGTCTTCTATAGCCAAG 58.018 45.455 0.00 0.00 0.00 3.61
2940 4535 2.734079 GCGATGTCTTCTATAGCCAAGC 59.266 50.000 0.00 0.00 0.00 4.01
2941 4536 3.553922 GCGATGTCTTCTATAGCCAAGCT 60.554 47.826 0.00 0.00 43.41 3.74
2942 4537 4.626042 CGATGTCTTCTATAGCCAAGCTT 58.374 43.478 0.00 0.00 40.44 3.74
2943 4538 4.447054 CGATGTCTTCTATAGCCAAGCTTG 59.553 45.833 19.93 19.93 40.44 4.01
2944 4539 4.826274 TGTCTTCTATAGCCAAGCTTGT 57.174 40.909 24.35 10.13 40.44 3.16
2945 4540 5.932619 TGTCTTCTATAGCCAAGCTTGTA 57.067 39.130 24.35 12.06 40.44 2.41
2946 4541 5.907207 TGTCTTCTATAGCCAAGCTTGTAG 58.093 41.667 24.35 18.11 40.44 2.74
2947 4542 4.747605 GTCTTCTATAGCCAAGCTTGTAGC 59.252 45.833 24.35 20.45 40.44 3.58
2948 4543 3.753294 TCTATAGCCAAGCTTGTAGCC 57.247 47.619 24.35 10.08 43.77 3.93
2949 4544 2.035961 TCTATAGCCAAGCTTGTAGCCG 59.964 50.000 24.35 10.22 43.77 5.52
2950 4545 0.179045 ATAGCCAAGCTTGTAGCCGG 60.179 55.000 24.35 9.68 43.77 6.13
2952 4547 2.359850 CCAAGCTTGTAGCCGGCA 60.360 61.111 31.54 12.31 43.77 5.69
2953 4548 1.971167 CCAAGCTTGTAGCCGGCAA 60.971 57.895 31.54 13.85 43.77 4.52
2954 4549 1.503542 CAAGCTTGTAGCCGGCAAG 59.496 57.895 31.54 23.91 43.77 4.01
2955 4550 1.073199 AAGCTTGTAGCCGGCAAGT 59.927 52.632 31.54 11.17 43.77 3.16
2956 4551 0.323629 AAGCTTGTAGCCGGCAAGTA 59.676 50.000 31.54 9.92 43.77 2.24
2957 4552 0.541863 AGCTTGTAGCCGGCAAGTAT 59.458 50.000 31.54 10.27 43.77 2.12
2958 4553 1.760613 AGCTTGTAGCCGGCAAGTATA 59.239 47.619 31.54 9.03 43.77 1.47
2959 4554 2.169769 AGCTTGTAGCCGGCAAGTATAA 59.830 45.455 31.54 15.57 43.77 0.98
2960 4555 3.139077 GCTTGTAGCCGGCAAGTATAAT 58.861 45.455 31.54 7.63 43.65 1.28
2961 4556 4.039973 AGCTTGTAGCCGGCAAGTATAATA 59.960 41.667 31.54 6.42 43.77 0.98
2962 4557 4.389077 GCTTGTAGCCGGCAAGTATAATAG 59.611 45.833 31.54 12.57 43.65 1.73
2963 4558 5.539048 CTTGTAGCCGGCAAGTATAATAGT 58.461 41.667 31.54 5.27 38.68 2.12
2964 4559 4.878439 TGTAGCCGGCAAGTATAATAGTG 58.122 43.478 31.54 0.00 0.00 2.74
2965 4560 4.585581 TGTAGCCGGCAAGTATAATAGTGA 59.414 41.667 31.54 0.00 0.00 3.41
2966 4561 4.258702 AGCCGGCAAGTATAATAGTGAG 57.741 45.455 31.54 0.00 0.00 3.51
2967 4562 3.895656 AGCCGGCAAGTATAATAGTGAGA 59.104 43.478 31.54 0.00 0.00 3.27
2968 4563 4.528596 AGCCGGCAAGTATAATAGTGAGAT 59.471 41.667 31.54 0.00 0.00 2.75
2969 4564 4.627467 GCCGGCAAGTATAATAGTGAGATG 59.373 45.833 24.80 0.00 0.00 2.90
2970 4565 5.784177 CCGGCAAGTATAATAGTGAGATGT 58.216 41.667 0.00 0.00 0.00 3.06
2971 4566 6.571731 GCCGGCAAGTATAATAGTGAGATGTA 60.572 42.308 24.80 0.00 0.00 2.29
2972 4567 7.375834 CCGGCAAGTATAATAGTGAGATGTAA 58.624 38.462 0.00 0.00 0.00 2.41
2973 4568 7.870954 CCGGCAAGTATAATAGTGAGATGTAAA 59.129 37.037 0.00 0.00 0.00 2.01
2974 4569 8.916654 CGGCAAGTATAATAGTGAGATGTAAAG 58.083 37.037 0.00 0.00 0.00 1.85
2975 4570 9.982651 GGCAAGTATAATAGTGAGATGTAAAGA 57.017 33.333 0.00 0.00 0.00 2.52
2983 4578 8.879342 AATAGTGAGATGTAAAGATGTGCTAC 57.121 34.615 0.00 0.00 0.00 3.58
2984 4579 6.537453 AGTGAGATGTAAAGATGTGCTACT 57.463 37.500 0.00 0.00 0.00 2.57
2985 4580 6.940739 AGTGAGATGTAAAGATGTGCTACTT 58.059 36.000 0.00 0.00 0.00 2.24
2986 4581 7.038659 AGTGAGATGTAAAGATGTGCTACTTC 58.961 38.462 0.00 0.00 0.00 3.01
2987 4582 6.813649 GTGAGATGTAAAGATGTGCTACTTCA 59.186 38.462 0.00 0.00 0.00 3.02
2988 4583 7.493971 GTGAGATGTAAAGATGTGCTACTTCAT 59.506 37.037 0.00 0.00 0.00 2.57
2989 4584 8.043113 TGAGATGTAAAGATGTGCTACTTCATT 58.957 33.333 0.00 0.00 0.00 2.57
2990 4585 8.206325 AGATGTAAAGATGTGCTACTTCATTG 57.794 34.615 0.00 0.00 0.00 2.82
2991 4586 8.043113 AGATGTAAAGATGTGCTACTTCATTGA 58.957 33.333 0.00 0.00 0.00 2.57
2992 4587 8.743085 ATGTAAAGATGTGCTACTTCATTGAT 57.257 30.769 0.00 0.00 0.00 2.57
2993 4588 9.836864 ATGTAAAGATGTGCTACTTCATTGATA 57.163 29.630 0.00 0.00 0.00 2.15
2994 4589 9.836864 TGTAAAGATGTGCTACTTCATTGATAT 57.163 29.630 0.00 0.00 0.00 1.63
2999 4594 9.650539 AGATGTGCTACTTCATTGATATATGAC 57.349 33.333 0.00 0.00 34.41 3.06
3000 4595 8.783833 ATGTGCTACTTCATTGATATATGACC 57.216 34.615 0.00 0.00 34.41 4.02
3001 4596 7.161404 TGTGCTACTTCATTGATATATGACCC 58.839 38.462 0.00 0.00 34.41 4.46
3002 4597 7.161404 GTGCTACTTCATTGATATATGACCCA 58.839 38.462 0.00 0.00 34.41 4.51
3003 4598 7.118390 GTGCTACTTCATTGATATATGACCCAC 59.882 40.741 0.00 0.00 34.41 4.61
3004 4599 6.595716 GCTACTTCATTGATATATGACCCACC 59.404 42.308 0.00 0.00 34.41 4.61
3005 4600 6.770286 ACTTCATTGATATATGACCCACCT 57.230 37.500 0.00 0.00 34.41 4.00
3006 4601 7.154191 ACTTCATTGATATATGACCCACCTT 57.846 36.000 0.00 0.00 34.41 3.50
3007 4602 7.227156 ACTTCATTGATATATGACCCACCTTC 58.773 38.462 0.00 0.00 34.41 3.46
3008 4603 6.126863 TCATTGATATATGACCCACCTTCC 57.873 41.667 0.00 0.00 29.82 3.46
3009 4604 4.617253 TTGATATATGACCCACCTTCCG 57.383 45.455 0.00 0.00 0.00 4.30
3010 4605 2.301870 TGATATATGACCCACCTTCCGC 59.698 50.000 0.00 0.00 0.00 5.54
3011 4606 2.097110 TATATGACCCACCTTCCGCT 57.903 50.000 0.00 0.00 0.00 5.52
3012 4607 0.759346 ATATGACCCACCTTCCGCTC 59.241 55.000 0.00 0.00 0.00 5.03
3013 4608 0.325296 TATGACCCACCTTCCGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
3014 4609 1.617947 ATGACCCACCTTCCGCTCTC 61.618 60.000 0.00 0.00 0.00 3.20
3015 4610 2.203788 ACCCACCTTCCGCTCTCA 60.204 61.111 0.00 0.00 0.00 3.27
3016 4611 2.266055 CCCACCTTCCGCTCTCAC 59.734 66.667 0.00 0.00 0.00 3.51
3017 4612 2.583441 CCCACCTTCCGCTCTCACA 61.583 63.158 0.00 0.00 0.00 3.58
3018 4613 1.599047 CCACCTTCCGCTCTCACAT 59.401 57.895 0.00 0.00 0.00 3.21
3019 4614 0.824109 CCACCTTCCGCTCTCACATA 59.176 55.000 0.00 0.00 0.00 2.29
3020 4615 1.414181 CCACCTTCCGCTCTCACATAT 59.586 52.381 0.00 0.00 0.00 1.78
3021 4616 2.158900 CCACCTTCCGCTCTCACATATT 60.159 50.000 0.00 0.00 0.00 1.28
3022 4617 2.868583 CACCTTCCGCTCTCACATATTG 59.131 50.000 0.00 0.00 0.00 1.90
3023 4618 1.869767 CCTTCCGCTCTCACATATTGC 59.130 52.381 0.00 0.00 0.00 3.56
3024 4619 2.484417 CCTTCCGCTCTCACATATTGCT 60.484 50.000 0.00 0.00 0.00 3.91
3025 4620 2.988010 TCCGCTCTCACATATTGCTT 57.012 45.000 0.00 0.00 0.00 3.91
3026 4621 4.371786 CTTCCGCTCTCACATATTGCTTA 58.628 43.478 0.00 0.00 0.00 3.09
3027 4622 3.982475 TCCGCTCTCACATATTGCTTAG 58.018 45.455 0.00 0.00 0.00 2.18
3028 4623 3.062763 CCGCTCTCACATATTGCTTAGG 58.937 50.000 0.00 0.00 0.00 2.69
3029 4624 3.243873 CCGCTCTCACATATTGCTTAGGA 60.244 47.826 0.00 0.00 0.00 2.94
3030 4625 3.986572 CGCTCTCACATATTGCTTAGGAG 59.013 47.826 0.00 0.00 0.00 3.69
3049 4644 4.395583 GCGTGCTGCAGTTGGCTC 62.396 66.667 16.64 1.45 45.45 4.70
3050 4645 2.667536 CGTGCTGCAGTTGGCTCT 60.668 61.111 16.64 0.00 45.15 4.09
3051 4646 2.256591 CGTGCTGCAGTTGGCTCTT 61.257 57.895 16.64 0.00 45.15 2.85
3052 4647 0.950555 CGTGCTGCAGTTGGCTCTTA 60.951 55.000 16.64 0.00 45.15 2.10
3053 4648 1.457346 GTGCTGCAGTTGGCTCTTAT 58.543 50.000 16.64 0.00 45.15 1.73
3054 4649 1.815003 GTGCTGCAGTTGGCTCTTATT 59.185 47.619 16.64 0.00 45.15 1.40
3055 4650 2.086869 TGCTGCAGTTGGCTCTTATTC 58.913 47.619 16.64 0.00 45.15 1.75
3056 4651 2.290514 TGCTGCAGTTGGCTCTTATTCT 60.291 45.455 16.64 0.00 45.15 2.40
3057 4652 2.097142 GCTGCAGTTGGCTCTTATTCTG 59.903 50.000 16.64 0.00 45.15 3.02
3058 4653 3.341823 CTGCAGTTGGCTCTTATTCTGT 58.658 45.455 5.25 0.00 45.15 3.41
3059 4654 4.507710 CTGCAGTTGGCTCTTATTCTGTA 58.492 43.478 5.25 0.00 45.15 2.74
3060 4655 4.507710 TGCAGTTGGCTCTTATTCTGTAG 58.492 43.478 0.00 0.00 45.15 2.74
3061 4656 3.311048 GCAGTTGGCTCTTATTCTGTAGC 59.689 47.826 0.00 0.00 40.25 3.58
3062 4657 4.764172 CAGTTGGCTCTTATTCTGTAGCT 58.236 43.478 0.00 0.00 35.30 3.32
3063 4658 4.569966 CAGTTGGCTCTTATTCTGTAGCTG 59.430 45.833 0.00 0.00 35.30 4.24
3064 4659 3.827008 TGGCTCTTATTCTGTAGCTGG 57.173 47.619 0.00 0.00 35.30 4.85
3065 4660 2.158900 TGGCTCTTATTCTGTAGCTGGC 60.159 50.000 0.00 0.00 35.30 4.85
3066 4661 2.103941 GGCTCTTATTCTGTAGCTGGCT 59.896 50.000 0.00 0.00 35.30 4.75
3067 4662 3.389221 GCTCTTATTCTGTAGCTGGCTC 58.611 50.000 0.00 0.00 32.18 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 245 0.673333 TGCGAGTGGCCAACATACTG 60.673 55.000 7.24 0.00 42.61 2.74
283 284 6.182627 TGTAGAACCTTACGAGTTCATCCTA 58.817 40.000 6.44 0.00 44.91 2.94
298 299 5.324409 TGAAATTCAGGCAATGTAGAACCT 58.676 37.500 0.00 0.00 0.00 3.50
304 305 4.705991 TGCTCATGAAATTCAGGCAATGTA 59.294 37.500 14.93 0.00 31.30 2.29
325 326 1.597742 TCAGCTGAGTCCAGTTTTGC 58.402 50.000 13.74 0.00 42.35 3.68
333 334 3.603532 TGTTGATTCATCAGCTGAGTCC 58.396 45.455 22.96 9.59 39.28 3.85
334 335 3.622163 CCTGTTGATTCATCAGCTGAGTC 59.378 47.826 22.96 16.38 40.17 3.36
345 346 2.040145 TCTGATGCACCCTGTTGATTCA 59.960 45.455 0.00 0.00 0.00 2.57
346 347 2.715046 TCTGATGCACCCTGTTGATTC 58.285 47.619 0.00 0.00 0.00 2.52
351 352 1.180029 GCAATCTGATGCACCCTGTT 58.820 50.000 0.00 0.00 45.70 3.16
526 560 1.660575 CTGTTCTCGGCGACAACGT 60.661 57.895 20.25 0.00 41.98 3.99
557 591 2.829384 GGAGCTGGTGGTGGGAACA 61.829 63.158 0.00 0.00 38.70 3.18
560 594 4.270153 AGGGAGCTGGTGGTGGGA 62.270 66.667 0.00 0.00 0.00 4.37
768 809 3.714001 GTTCTCCCGACCCACCCC 61.714 72.222 0.00 0.00 0.00 4.95
780 821 1.480954 TGGATAAGAGTGGCCGTTCTC 59.519 52.381 9.06 10.95 0.00 2.87
915 972 1.674441 CACCTTATCCTCGACGTGCTA 59.326 52.381 0.00 0.00 0.00 3.49
1026 1087 2.490685 GGAGAGACGCGAAGGACC 59.509 66.667 15.93 6.89 0.00 4.46
1117 1181 1.838073 AAAGTACCAGAGTGGCCGGG 61.838 60.000 2.18 0.00 42.67 5.73
1133 1197 1.992170 GCATGGAGCAGAAGCAAAAG 58.008 50.000 0.00 0.00 45.49 2.27
1161 1235 1.063616 CTGGATTCGTGCAGCTCATTG 59.936 52.381 0.00 0.00 0.00 2.82
1220 1294 2.592308 GCTTGGGCTTCCGGAGAT 59.408 61.111 3.34 0.00 35.22 2.75
1231 1305 1.751927 GATCCCAGCACAGCTTGGG 60.752 63.158 14.24 14.24 41.17 4.12
1245 1319 3.918220 CAGCAGCGCGTTCGATCC 61.918 66.667 8.43 0.00 38.10 3.36
1363 1437 0.458025 AACGAGTCGCCGAGGATTTC 60.458 55.000 13.59 0.00 0.00 2.17
1364 1438 0.458025 GAACGAGTCGCCGAGGATTT 60.458 55.000 13.59 0.00 0.00 2.17
1365 1439 1.139095 GAACGAGTCGCCGAGGATT 59.861 57.895 13.59 0.00 0.00 3.01
1366 1440 2.799371 GAACGAGTCGCCGAGGAT 59.201 61.111 13.59 0.00 0.00 3.24
1367 1441 3.796443 CGAACGAGTCGCCGAGGA 61.796 66.667 19.11 0.00 44.14 3.71
1375 1449 1.737008 GTGGAAGGCCGAACGAGTC 60.737 63.158 0.00 0.00 36.79 3.36
1376 1450 2.342648 GTGGAAGGCCGAACGAGT 59.657 61.111 0.00 0.00 36.79 4.18
1377 1451 2.809601 CGTGGAAGGCCGAACGAG 60.810 66.667 14.72 0.00 36.09 4.18
1378 1452 3.296836 TCGTGGAAGGCCGAACGA 61.297 61.111 17.40 17.40 39.43 3.85
1379 1453 3.110178 GTCGTGGAAGGCCGAACG 61.110 66.667 13.97 13.97 35.54 3.95
1380 1454 2.029964 TGTCGTGGAAGGCCGAAC 59.970 61.111 0.00 0.00 36.79 3.95
1381 1455 2.029964 GTGTCGTGGAAGGCCGAA 59.970 61.111 0.00 0.00 36.79 4.30
1382 1456 4.351938 CGTGTCGTGGAAGGCCGA 62.352 66.667 0.00 0.00 36.79 5.54
1384 1458 4.681978 AGCGTGTCGTGGAAGGCC 62.682 66.667 0.00 0.00 0.00 5.19
1385 1459 3.414700 CAGCGTGTCGTGGAAGGC 61.415 66.667 0.00 0.00 0.00 4.35
1386 1460 2.738521 CCAGCGTGTCGTGGAAGG 60.739 66.667 5.37 0.00 35.67 3.46
1387 1461 1.734477 CTCCAGCGTGTCGTGGAAG 60.734 63.158 11.84 5.89 42.41 3.46
1388 1462 2.338620 CTCCAGCGTGTCGTGGAA 59.661 61.111 11.84 1.86 42.41 3.53
1389 1463 4.357947 GCTCCAGCGTGTCGTGGA 62.358 66.667 10.84 10.84 40.72 4.02
1394 1468 0.737715 CTGGTTAGCTCCAGCGTGTC 60.738 60.000 8.43 0.00 46.53 3.67
1395 1469 1.293498 CTGGTTAGCTCCAGCGTGT 59.707 57.895 8.43 0.00 46.53 4.49
1396 1470 4.192000 CTGGTTAGCTCCAGCGTG 57.808 61.111 8.43 0.00 46.53 5.34
1401 1475 0.178068 GAATCGCCTGGTTAGCTCCA 59.822 55.000 0.00 0.00 36.00 3.86
1402 1476 0.876342 CGAATCGCCTGGTTAGCTCC 60.876 60.000 0.00 0.00 0.00 4.70
1403 1477 2.594541 CGAATCGCCTGGTTAGCTC 58.405 57.895 0.00 0.00 0.00 4.09
1404 1478 4.835927 CGAATCGCCTGGTTAGCT 57.164 55.556 0.00 0.00 0.00 3.32
1435 1509 1.566018 CGAACTCCACCTGCGGAAAC 61.566 60.000 0.00 0.00 33.65 2.78
1436 1510 1.301401 CGAACTCCACCTGCGGAAA 60.301 57.895 0.00 0.00 33.65 3.13
1437 1511 2.342279 CGAACTCCACCTGCGGAA 59.658 61.111 0.00 0.00 33.65 4.30
1438 1512 3.691342 CCGAACTCCACCTGCGGA 61.691 66.667 0.00 0.00 44.43 5.54
1439 1513 4.760047 CCCGAACTCCACCTGCGG 62.760 72.222 0.00 0.00 41.53 5.69
1440 1514 2.642254 TACCCGAACTCCACCTGCG 61.642 63.158 0.00 0.00 0.00 5.18
1441 1515 1.079336 GTACCCGAACTCCACCTGC 60.079 63.158 0.00 0.00 0.00 4.85
1442 1516 0.531200 GAGTACCCGAACTCCACCTG 59.469 60.000 0.00 0.00 40.06 4.00
1556 1750 3.053291 CGCTGCCGGGTTTTGCTA 61.053 61.111 2.18 0.00 0.00 3.49
1558 1752 4.700365 GACGCTGCCGGGTTTTGC 62.700 66.667 2.18 0.00 39.22 3.68
1564 1758 2.040544 AAATTGAGACGCTGCCGGG 61.041 57.895 2.18 0.00 39.22 5.73
1574 1768 4.516323 TCTTCATCGATGGCAAATTGAGA 58.484 39.130 24.61 11.85 0.00 3.27
1578 1772 5.649395 TCTTCTTCTTCATCGATGGCAAATT 59.351 36.000 24.61 0.00 0.00 1.82
1605 1799 2.032924 GGTTCAGGTGAAAAACAGACGG 59.967 50.000 0.00 0.00 35.58 4.79
1606 1800 2.943033 AGGTTCAGGTGAAAAACAGACG 59.057 45.455 0.00 0.00 35.58 4.18
1617 1811 2.554032 GGTTTGTGATCAGGTTCAGGTG 59.446 50.000 0.00 0.00 0.00 4.00
1838 2037 0.176910 TTGAACGTGCCAGAGTGACA 59.823 50.000 0.00 0.00 0.00 3.58
1839 2038 0.582005 GTTGAACGTGCCAGAGTGAC 59.418 55.000 0.00 0.00 0.00 3.67
1840 2039 0.464036 AGTTGAACGTGCCAGAGTGA 59.536 50.000 0.00 0.00 0.00 3.41
1841 2040 0.583438 CAGTTGAACGTGCCAGAGTG 59.417 55.000 0.00 0.00 0.00 3.51
1842 2041 0.178068 ACAGTTGAACGTGCCAGAGT 59.822 50.000 0.00 0.00 0.00 3.24
1843 2042 2.148916 TACAGTTGAACGTGCCAGAG 57.851 50.000 0.00 0.00 0.00 3.35
1844 2043 2.412870 CATACAGTTGAACGTGCCAGA 58.587 47.619 0.00 0.00 0.00 3.86
1846 2045 0.871722 GCATACAGTTGAACGTGCCA 59.128 50.000 0.00 0.00 0.00 4.92
1847 2046 0.871722 TGCATACAGTTGAACGTGCC 59.128 50.000 12.67 0.00 0.00 5.01
1851 2050 6.303022 CACAAGTTTATGCATACAGTTGAACG 59.697 38.462 32.44 21.29 31.28 3.95
1853 2052 7.228507 ACTCACAAGTTTATGCATACAGTTGAA 59.771 33.333 32.44 22.65 31.28 2.69
1854 2053 6.710295 ACTCACAAGTTTATGCATACAGTTGA 59.290 34.615 32.44 18.64 31.28 3.18
1855 2054 6.902341 ACTCACAAGTTTATGCATACAGTTG 58.098 36.000 27.47 27.47 32.41 3.16
1856 2055 7.013274 ACAACTCACAAGTTTATGCATACAGTT 59.987 33.333 5.74 6.51 43.28 3.16
1859 2058 6.484977 TGACAACTCACAAGTTTATGCATACA 59.515 34.615 5.74 0.00 43.28 2.29
1860 2059 6.898041 TGACAACTCACAAGTTTATGCATAC 58.102 36.000 5.74 0.00 43.28 2.39
1861 2060 6.710295 ACTGACAACTCACAAGTTTATGCATA 59.290 34.615 1.16 1.16 43.28 3.14
1863 2062 4.881273 ACTGACAACTCACAAGTTTATGCA 59.119 37.500 0.00 0.00 43.28 3.96
1865 2064 6.688385 CACAACTGACAACTCACAAGTTTATG 59.312 38.462 0.00 0.00 43.28 1.90
1866 2065 6.597672 TCACAACTGACAACTCACAAGTTTAT 59.402 34.615 0.00 0.00 43.28 1.40
1867 2066 5.935206 TCACAACTGACAACTCACAAGTTTA 59.065 36.000 0.00 0.00 43.28 2.01
1871 2070 4.264543 GTCACAACTGACAACTCACAAG 57.735 45.455 0.00 0.00 45.57 3.16
2042 2243 0.252421 AGCAGTGGTCTGATCCTCCA 60.252 55.000 0.00 0.00 43.76 3.86
2061 2262 7.718314 TGATCGAGGTGTTCTAGCTATTAGTTA 59.282 37.037 0.00 0.00 37.23 2.24
2119 2325 5.850557 AACCCATAATCAATCGATGCAAA 57.149 34.783 0.00 0.00 30.13 3.68
2201 2407 4.711399 TCGGAGATCGGAGTATAACTCAA 58.289 43.478 9.15 0.00 46.79 3.02
2225 2431 6.479972 TCCATGTGAATCTCGGTACTATTT 57.520 37.500 0.00 0.00 0.00 1.40
2271 2488 6.253298 CGACAATGTTTGAGTTTTGTTGTCAT 59.747 34.615 13.58 0.00 42.27 3.06
2287 3882 3.363970 GCGATTCTTGTGTCGACAATGTT 60.364 43.478 21.95 3.16 41.33 2.71
2362 3957 2.275318 GATCTCTCGGAGCCAGTTTTG 58.725 52.381 0.00 0.00 0.00 2.44
2372 3967 3.819337 CGGGTATTAAGTGATCTCTCGGA 59.181 47.826 0.00 0.00 0.00 4.55
2386 3981 4.025360 TGTCTACCAAAGCTCGGGTATTA 58.975 43.478 14.78 6.08 38.87 0.98
2387 3982 2.835764 TGTCTACCAAAGCTCGGGTATT 59.164 45.455 14.78 0.00 38.87 1.89
2392 3987 3.802948 AGTATGTCTACCAAAGCTCGG 57.197 47.619 0.57 0.57 0.00 4.63
2393 3988 6.588756 TGTTTAAGTATGTCTACCAAAGCTCG 59.411 38.462 0.00 0.00 0.00 5.03
2394 3989 7.900782 TGTTTAAGTATGTCTACCAAAGCTC 57.099 36.000 0.00 0.00 0.00 4.09
2395 3990 8.730680 CAATGTTTAAGTATGTCTACCAAAGCT 58.269 33.333 0.00 0.00 0.00 3.74
2396 3991 8.512138 ACAATGTTTAAGTATGTCTACCAAAGC 58.488 33.333 0.00 0.00 0.00 3.51
2398 3993 9.562408 TGACAATGTTTAAGTATGTCTACCAAA 57.438 29.630 5.88 0.00 40.70 3.28
2399 3994 9.562408 TTGACAATGTTTAAGTATGTCTACCAA 57.438 29.630 5.88 0.00 40.70 3.67
2400 3995 9.214957 CTTGACAATGTTTAAGTATGTCTACCA 57.785 33.333 5.88 0.00 40.70 3.25
2401 3996 9.216117 ACTTGACAATGTTTAAGTATGTCTACC 57.784 33.333 12.95 0.00 40.70 3.18
2410 4005 9.841295 TCCTAAGTTACTTGACAATGTTTAAGT 57.159 29.630 16.90 16.90 37.21 2.24
2413 4008 8.767085 CGTTCCTAAGTTACTTGACAATGTTTA 58.233 33.333 8.00 0.00 0.00 2.01
2414 4009 7.255001 CCGTTCCTAAGTTACTTGACAATGTTT 60.255 37.037 8.00 0.00 0.00 2.83
2415 4010 6.204108 CCGTTCCTAAGTTACTTGACAATGTT 59.796 38.462 8.00 0.00 0.00 2.71
2416 4011 5.699458 CCGTTCCTAAGTTACTTGACAATGT 59.301 40.000 8.00 0.00 0.00 2.71
2417 4012 5.121768 CCCGTTCCTAAGTTACTTGACAATG 59.878 44.000 8.00 3.08 0.00 2.82
2418 4013 5.012354 TCCCGTTCCTAAGTTACTTGACAAT 59.988 40.000 8.00 0.00 0.00 2.71
2419 4014 4.344679 TCCCGTTCCTAAGTTACTTGACAA 59.655 41.667 8.00 0.00 0.00 3.18
2420 4015 3.896888 TCCCGTTCCTAAGTTACTTGACA 59.103 43.478 8.00 0.00 0.00 3.58
2421 4016 4.240888 GTCCCGTTCCTAAGTTACTTGAC 58.759 47.826 8.00 0.39 0.00 3.18
2422 4017 3.057315 CGTCCCGTTCCTAAGTTACTTGA 60.057 47.826 8.00 0.00 0.00 3.02
2423 4018 3.057315 TCGTCCCGTTCCTAAGTTACTTG 60.057 47.826 8.00 0.00 0.00 3.16
2424 4019 3.057245 GTCGTCCCGTTCCTAAGTTACTT 60.057 47.826 2.32 2.32 0.00 2.24
2425 4020 2.489722 GTCGTCCCGTTCCTAAGTTACT 59.510 50.000 0.00 0.00 0.00 2.24
2426 4021 2.489722 AGTCGTCCCGTTCCTAAGTTAC 59.510 50.000 0.00 0.00 0.00 2.50
2427 4022 2.795329 AGTCGTCCCGTTCCTAAGTTA 58.205 47.619 0.00 0.00 0.00 2.24
2428 4023 1.625511 AGTCGTCCCGTTCCTAAGTT 58.374 50.000 0.00 0.00 0.00 2.66
2429 4024 1.271656 CAAGTCGTCCCGTTCCTAAGT 59.728 52.381 0.00 0.00 0.00 2.24
2430 4025 1.403780 CCAAGTCGTCCCGTTCCTAAG 60.404 57.143 0.00 0.00 0.00 2.18
2431 4026 0.604578 CCAAGTCGTCCCGTTCCTAA 59.395 55.000 0.00 0.00 0.00 2.69
2432 4027 1.880819 GCCAAGTCGTCCCGTTCCTA 61.881 60.000 0.00 0.00 0.00 2.94
2433 4028 3.057337 CCAAGTCGTCCCGTTCCT 58.943 61.111 0.00 0.00 0.00 3.36
2434 4029 2.741211 GCCAAGTCGTCCCGTTCC 60.741 66.667 0.00 0.00 0.00 3.62
2435 4030 2.741211 GGCCAAGTCGTCCCGTTC 60.741 66.667 0.00 0.00 0.00 3.95
2436 4031 3.239253 AGGCCAAGTCGTCCCGTT 61.239 61.111 5.01 0.00 0.00 4.44
2437 4032 4.003788 CAGGCCAAGTCGTCCCGT 62.004 66.667 5.01 0.00 0.00 5.28
2438 4033 3.530910 AACAGGCCAAGTCGTCCCG 62.531 63.158 5.01 0.00 0.00 5.14
2439 4034 0.822121 AAAACAGGCCAAGTCGTCCC 60.822 55.000 5.01 0.00 0.00 4.46
2440 4035 0.310854 CAAAACAGGCCAAGTCGTCC 59.689 55.000 5.01 0.00 0.00 4.79
2441 4036 0.310854 CCAAAACAGGCCAAGTCGTC 59.689 55.000 5.01 0.00 0.00 4.20
2442 4037 0.395173 ACCAAAACAGGCCAAGTCGT 60.395 50.000 5.01 0.00 0.00 4.34
2443 4038 0.744281 AACCAAAACAGGCCAAGTCG 59.256 50.000 5.01 0.00 0.00 4.18
2444 4039 1.202521 CCAACCAAAACAGGCCAAGTC 60.203 52.381 5.01 0.00 0.00 3.01
2445 4040 0.829990 CCAACCAAAACAGGCCAAGT 59.170 50.000 5.01 0.00 0.00 3.16
2446 4041 0.829990 ACCAACCAAAACAGGCCAAG 59.170 50.000 5.01 0.00 0.00 3.61
2447 4042 1.065854 CAACCAACCAAAACAGGCCAA 60.066 47.619 5.01 0.00 0.00 4.52
2448 4043 0.539051 CAACCAACCAAAACAGGCCA 59.461 50.000 5.01 0.00 0.00 5.36
2449 4044 0.179059 CCAACCAACCAAAACAGGCC 60.179 55.000 0.00 0.00 0.00 5.19
2450 4045 0.827368 TCCAACCAACCAAAACAGGC 59.173 50.000 0.00 0.00 0.00 4.85
2451 4046 2.499693 ACTTCCAACCAACCAAAACAGG 59.500 45.455 0.00 0.00 0.00 4.00
2452 4047 3.885724 ACTTCCAACCAACCAAAACAG 57.114 42.857 0.00 0.00 0.00 3.16
2453 4048 5.480772 TCTTAACTTCCAACCAACCAAAACA 59.519 36.000 0.00 0.00 0.00 2.83
2454 4049 5.968254 TCTTAACTTCCAACCAACCAAAAC 58.032 37.500 0.00 0.00 0.00 2.43
2455 4050 6.351456 CCTTCTTAACTTCCAACCAACCAAAA 60.351 38.462 0.00 0.00 0.00 2.44
2456 4051 5.128008 CCTTCTTAACTTCCAACCAACCAAA 59.872 40.000 0.00 0.00 0.00 3.28
2457 4052 4.647399 CCTTCTTAACTTCCAACCAACCAA 59.353 41.667 0.00 0.00 0.00 3.67
2458 4053 4.211920 CCTTCTTAACTTCCAACCAACCA 58.788 43.478 0.00 0.00 0.00 3.67
2459 4054 3.005472 GCCTTCTTAACTTCCAACCAACC 59.995 47.826 0.00 0.00 0.00 3.77
2460 4055 3.889538 AGCCTTCTTAACTTCCAACCAAC 59.110 43.478 0.00 0.00 0.00 3.77
2461 4056 4.178956 AGCCTTCTTAACTTCCAACCAA 57.821 40.909 0.00 0.00 0.00 3.67
2462 4057 3.876309 AGCCTTCTTAACTTCCAACCA 57.124 42.857 0.00 0.00 0.00 3.67
2840 4435 2.119484 TTGACCCTTGCACCGGTAGG 62.119 60.000 6.87 11.43 45.13 3.18
2841 4436 0.673644 CTTGACCCTTGCACCGGTAG 60.674 60.000 6.87 0.00 30.56 3.18
2842 4437 1.373435 CTTGACCCTTGCACCGGTA 59.627 57.895 6.87 0.00 30.56 4.02
2843 4438 2.113139 CTTGACCCTTGCACCGGT 59.887 61.111 0.00 0.00 34.13 5.28
2844 4439 2.672996 CCTTGACCCTTGCACCGG 60.673 66.667 0.00 0.00 0.00 5.28
2845 4440 1.966451 GTCCTTGACCCTTGCACCG 60.966 63.158 0.00 0.00 0.00 4.94
2846 4441 1.603739 GGTCCTTGACCCTTGCACC 60.604 63.158 1.68 0.00 46.19 5.01
2847 4442 4.081050 GGTCCTTGACCCTTGCAC 57.919 61.111 1.68 0.00 46.19 4.57
2855 4450 4.679372 GCTCTTAGATGTCAGGTCCTTGAC 60.679 50.000 12.17 12.17 46.02 3.18
2856 4451 3.449018 GCTCTTAGATGTCAGGTCCTTGA 59.551 47.826 0.00 0.00 0.00 3.02
2857 4452 3.196469 TGCTCTTAGATGTCAGGTCCTTG 59.804 47.826 0.00 0.00 0.00 3.61
2858 4453 3.445008 TGCTCTTAGATGTCAGGTCCTT 58.555 45.455 0.00 0.00 0.00 3.36
2859 4454 3.107402 TGCTCTTAGATGTCAGGTCCT 57.893 47.619 0.00 0.00 0.00 3.85
2860 4455 3.494048 CCATGCTCTTAGATGTCAGGTCC 60.494 52.174 0.00 0.00 0.00 4.46
2861 4456 3.133721 ACCATGCTCTTAGATGTCAGGTC 59.866 47.826 0.00 0.00 0.00 3.85
2862 4457 3.110705 ACCATGCTCTTAGATGTCAGGT 58.889 45.455 0.00 0.00 0.00 4.00
2863 4458 3.834489 ACCATGCTCTTAGATGTCAGG 57.166 47.619 0.00 0.00 0.00 3.86
2864 4459 8.147058 ACTATTAACCATGCTCTTAGATGTCAG 58.853 37.037 0.00 0.00 0.00 3.51
2865 4460 8.023021 ACTATTAACCATGCTCTTAGATGTCA 57.977 34.615 0.00 0.00 0.00 3.58
2866 4461 9.413048 GTACTATTAACCATGCTCTTAGATGTC 57.587 37.037 0.00 0.00 0.00 3.06
2867 4462 8.924303 TGTACTATTAACCATGCTCTTAGATGT 58.076 33.333 0.00 0.00 0.00 3.06
2868 4463 9.764363 TTGTACTATTAACCATGCTCTTAGATG 57.236 33.333 0.00 0.00 0.00 2.90
2869 4464 9.765795 GTTGTACTATTAACCATGCTCTTAGAT 57.234 33.333 0.00 0.00 0.00 1.98
2870 4465 8.202137 GGTTGTACTATTAACCATGCTCTTAGA 58.798 37.037 7.73 0.00 44.48 2.10
2871 4466 8.366671 GGTTGTACTATTAACCATGCTCTTAG 57.633 38.462 7.73 0.00 44.48 2.18
2881 4476 5.527582 CCATCAGCTGGTTGTACTATTAACC 59.472 44.000 15.13 6.00 45.15 2.85
2882 4477 6.604735 CCATCAGCTGGTTGTACTATTAAC 57.395 41.667 15.13 0.00 40.49 2.01
2898 4493 5.525012 TCGCAATATTCATATAGCCATCAGC 59.475 40.000 0.00 0.00 44.25 4.26
2899 4494 7.226128 ACATCGCAATATTCATATAGCCATCAG 59.774 37.037 0.00 0.00 0.00 2.90
2900 4495 7.049754 ACATCGCAATATTCATATAGCCATCA 58.950 34.615 0.00 0.00 0.00 3.07
2901 4496 7.440556 AGACATCGCAATATTCATATAGCCATC 59.559 37.037 0.00 0.00 0.00 3.51
2902 4497 7.278135 AGACATCGCAATATTCATATAGCCAT 58.722 34.615 0.00 0.00 0.00 4.40
2903 4498 6.643388 AGACATCGCAATATTCATATAGCCA 58.357 36.000 0.00 0.00 0.00 4.75
2904 4499 7.493971 AGAAGACATCGCAATATTCATATAGCC 59.506 37.037 0.00 0.00 0.00 3.93
2905 4500 8.417780 AGAAGACATCGCAATATTCATATAGC 57.582 34.615 0.00 0.00 0.00 2.97
2909 4504 9.521503 GCTATAGAAGACATCGCAATATTCATA 57.478 33.333 3.21 0.00 0.00 2.15
2910 4505 7.493971 GGCTATAGAAGACATCGCAATATTCAT 59.506 37.037 3.21 0.00 31.12 2.57
2911 4506 6.813649 GGCTATAGAAGACATCGCAATATTCA 59.186 38.462 3.21 0.00 31.12 2.57
2912 4507 6.813649 TGGCTATAGAAGACATCGCAATATTC 59.186 38.462 3.21 0.00 38.78 1.75
2913 4508 6.701340 TGGCTATAGAAGACATCGCAATATT 58.299 36.000 3.21 0.00 38.78 1.28
2914 4509 6.286240 TGGCTATAGAAGACATCGCAATAT 57.714 37.500 3.21 0.00 38.78 1.28
2915 4510 5.722021 TGGCTATAGAAGACATCGCAATA 57.278 39.130 3.21 0.00 38.78 1.90
2916 4511 4.607293 TGGCTATAGAAGACATCGCAAT 57.393 40.909 3.21 0.00 38.78 3.56
2917 4512 4.371786 CTTGGCTATAGAAGACATCGCAA 58.628 43.478 3.21 0.00 44.99 4.85
2918 4513 3.800261 GCTTGGCTATAGAAGACATCGCA 60.800 47.826 3.21 0.00 44.99 5.10
2919 4514 2.734079 GCTTGGCTATAGAAGACATCGC 59.266 50.000 3.21 0.00 44.99 4.58
2920 4515 4.250116 AGCTTGGCTATAGAAGACATCG 57.750 45.455 3.21 0.00 44.99 3.84
2921 4516 5.363939 ACAAGCTTGGCTATAGAAGACATC 58.636 41.667 29.18 0.00 44.99 3.06
2922 4517 5.365021 ACAAGCTTGGCTATAGAAGACAT 57.635 39.130 29.18 0.93 44.99 3.06
2923 4518 4.826274 ACAAGCTTGGCTATAGAAGACA 57.174 40.909 29.18 0.00 43.50 3.41
2924 4519 4.747605 GCTACAAGCTTGGCTATAGAAGAC 59.252 45.833 29.18 6.45 38.25 3.01
2925 4520 4.202264 GGCTACAAGCTTGGCTATAGAAGA 60.202 45.833 29.18 1.91 41.99 2.87
2926 4521 4.061596 GGCTACAAGCTTGGCTATAGAAG 58.938 47.826 29.18 13.57 41.99 2.85
2927 4522 3.492656 CGGCTACAAGCTTGGCTATAGAA 60.493 47.826 29.18 4.50 41.99 2.10
2928 4523 2.035961 CGGCTACAAGCTTGGCTATAGA 59.964 50.000 29.18 5.60 41.99 1.98
2929 4524 2.408050 CGGCTACAAGCTTGGCTATAG 58.592 52.381 29.18 20.98 41.99 1.31
2930 4525 1.070134 CCGGCTACAAGCTTGGCTATA 59.930 52.381 29.18 12.22 41.99 1.31
2931 4526 0.179045 CCGGCTACAAGCTTGGCTAT 60.179 55.000 29.18 11.70 41.99 2.97
2932 4527 1.220749 CCGGCTACAAGCTTGGCTA 59.779 57.895 29.18 13.27 41.99 3.93
2933 4528 2.045926 CCGGCTACAAGCTTGGCT 60.046 61.111 29.18 12.81 41.99 4.75
2935 4530 1.926511 CTTGCCGGCTACAAGCTTGG 61.927 60.000 29.70 14.26 41.99 3.61
2936 4531 1.237285 ACTTGCCGGCTACAAGCTTG 61.237 55.000 29.70 24.84 46.81 4.01
2937 4532 0.323629 TACTTGCCGGCTACAAGCTT 59.676 50.000 29.70 10.38 46.81 3.74
2938 4533 0.541863 ATACTTGCCGGCTACAAGCT 59.458 50.000 29.70 14.87 46.81 3.74
2939 4534 2.234300 TATACTTGCCGGCTACAAGC 57.766 50.000 29.70 0.00 46.81 4.01
2941 4536 5.069383 TCACTATTATACTTGCCGGCTACAA 59.931 40.000 29.70 13.13 0.00 2.41
2942 4537 4.585581 TCACTATTATACTTGCCGGCTACA 59.414 41.667 29.70 10.82 0.00 2.74
2943 4538 5.048224 TCTCACTATTATACTTGCCGGCTAC 60.048 44.000 29.70 0.00 0.00 3.58
2944 4539 5.074804 TCTCACTATTATACTTGCCGGCTA 58.925 41.667 29.70 20.51 0.00 3.93
2945 4540 3.895656 TCTCACTATTATACTTGCCGGCT 59.104 43.478 29.70 10.43 0.00 5.52
2946 4541 4.252971 TCTCACTATTATACTTGCCGGC 57.747 45.455 22.73 22.73 0.00 6.13
2947 4542 5.784177 ACATCTCACTATTATACTTGCCGG 58.216 41.667 0.00 0.00 0.00 6.13
2948 4543 8.812147 TTTACATCTCACTATTATACTTGCCG 57.188 34.615 0.00 0.00 0.00 5.69
2949 4544 9.982651 TCTTTACATCTCACTATTATACTTGCC 57.017 33.333 0.00 0.00 0.00 4.52
2957 4552 9.967346 GTAGCACATCTTTACATCTCACTATTA 57.033 33.333 0.00 0.00 0.00 0.98
2958 4553 8.700051 AGTAGCACATCTTTACATCTCACTATT 58.300 33.333 0.00 0.00 0.00 1.73
2959 4554 8.243961 AGTAGCACATCTTTACATCTCACTAT 57.756 34.615 0.00 0.00 0.00 2.12
2960 4555 7.646548 AGTAGCACATCTTTACATCTCACTA 57.353 36.000 0.00 0.00 0.00 2.74
2961 4556 6.537453 AGTAGCACATCTTTACATCTCACT 57.463 37.500 0.00 0.00 0.00 3.41
2962 4557 6.813649 TGAAGTAGCACATCTTTACATCTCAC 59.186 38.462 0.00 0.00 0.00 3.51
2963 4558 6.935167 TGAAGTAGCACATCTTTACATCTCA 58.065 36.000 0.00 0.00 0.00 3.27
2964 4559 8.333908 CAATGAAGTAGCACATCTTTACATCTC 58.666 37.037 0.00 0.00 0.00 2.75
2965 4560 8.043113 TCAATGAAGTAGCACATCTTTACATCT 58.957 33.333 0.00 0.00 0.00 2.90
2966 4561 8.201554 TCAATGAAGTAGCACATCTTTACATC 57.798 34.615 0.00 0.00 0.00 3.06
2967 4562 8.743085 ATCAATGAAGTAGCACATCTTTACAT 57.257 30.769 0.00 0.00 0.00 2.29
2968 4563 9.836864 ATATCAATGAAGTAGCACATCTTTACA 57.163 29.630 0.00 0.00 0.00 2.41
2973 4568 9.650539 GTCATATATCAATGAAGTAGCACATCT 57.349 33.333 0.00 0.00 37.61 2.90
2974 4569 8.877779 GGTCATATATCAATGAAGTAGCACATC 58.122 37.037 0.00 0.00 37.61 3.06
2975 4570 7.826252 GGGTCATATATCAATGAAGTAGCACAT 59.174 37.037 0.00 0.00 37.61 3.21
2976 4571 7.161404 GGGTCATATATCAATGAAGTAGCACA 58.839 38.462 0.00 0.00 37.61 4.57
2977 4572 7.118390 GTGGGTCATATATCAATGAAGTAGCAC 59.882 40.741 0.00 0.00 37.61 4.40
2978 4573 7.161404 GTGGGTCATATATCAATGAAGTAGCA 58.839 38.462 0.00 0.00 37.61 3.49
2979 4574 6.595716 GGTGGGTCATATATCAATGAAGTAGC 59.404 42.308 0.00 0.00 37.61 3.58
2980 4575 7.911651 AGGTGGGTCATATATCAATGAAGTAG 58.088 38.462 0.00 0.00 37.61 2.57
2981 4576 7.872061 AGGTGGGTCATATATCAATGAAGTA 57.128 36.000 0.00 0.00 37.61 2.24
2982 4577 6.770286 AGGTGGGTCATATATCAATGAAGT 57.230 37.500 0.00 0.00 37.61 3.01
2983 4578 6.656693 GGAAGGTGGGTCATATATCAATGAAG 59.343 42.308 0.00 0.00 37.61 3.02
2984 4579 6.542821 GGAAGGTGGGTCATATATCAATGAA 58.457 40.000 0.00 0.00 37.61 2.57
2985 4580 5.279960 CGGAAGGTGGGTCATATATCAATGA 60.280 44.000 0.00 0.00 33.48 2.57
2986 4581 4.937620 CGGAAGGTGGGTCATATATCAATG 59.062 45.833 0.00 0.00 0.00 2.82
2987 4582 4.565652 GCGGAAGGTGGGTCATATATCAAT 60.566 45.833 0.00 0.00 0.00 2.57
2988 4583 3.244422 GCGGAAGGTGGGTCATATATCAA 60.244 47.826 0.00 0.00 0.00 2.57
2989 4584 2.301870 GCGGAAGGTGGGTCATATATCA 59.698 50.000 0.00 0.00 0.00 2.15
2990 4585 2.567615 AGCGGAAGGTGGGTCATATATC 59.432 50.000 0.00 0.00 42.35 1.63
2991 4586 2.567615 GAGCGGAAGGTGGGTCATATAT 59.432 50.000 0.00 0.00 45.11 0.86
2992 4587 1.968493 GAGCGGAAGGTGGGTCATATA 59.032 52.381 0.00 0.00 45.11 0.86
2993 4588 0.759346 GAGCGGAAGGTGGGTCATAT 59.241 55.000 0.00 0.00 45.11 1.78
2994 4589 0.325296 AGAGCGGAAGGTGGGTCATA 60.325 55.000 0.00 0.00 45.11 2.15
2995 4590 1.613630 AGAGCGGAAGGTGGGTCAT 60.614 57.895 0.00 0.00 45.11 3.06
2996 4591 2.203788 AGAGCGGAAGGTGGGTCA 60.204 61.111 0.00 0.00 45.11 4.02
2997 4592 2.283529 TGAGAGCGGAAGGTGGGTC 61.284 63.158 0.00 0.00 45.11 4.46
2998 4593 2.203788 TGAGAGCGGAAGGTGGGT 60.204 61.111 0.00 0.00 45.11 4.51
2999 4594 1.903877 ATGTGAGAGCGGAAGGTGGG 61.904 60.000 0.00 0.00 45.11 4.61
3000 4595 0.824109 TATGTGAGAGCGGAAGGTGG 59.176 55.000 0.00 0.00 45.11 4.61
3001 4596 2.868583 CAATATGTGAGAGCGGAAGGTG 59.131 50.000 0.00 0.00 45.11 4.00
3003 4598 1.869767 GCAATATGTGAGAGCGGAAGG 59.130 52.381 0.00 0.00 0.00 3.46
3004 4599 2.831333 AGCAATATGTGAGAGCGGAAG 58.169 47.619 0.00 0.00 0.00 3.46
3005 4600 2.988010 AGCAATATGTGAGAGCGGAA 57.012 45.000 0.00 0.00 0.00 4.30
3006 4601 2.988010 AAGCAATATGTGAGAGCGGA 57.012 45.000 0.00 0.00 0.00 5.54
3007 4602 3.062763 CCTAAGCAATATGTGAGAGCGG 58.937 50.000 0.00 0.00 0.00 5.52
3008 4603 3.982475 TCCTAAGCAATATGTGAGAGCG 58.018 45.455 0.00 0.00 0.00 5.03
3032 4627 4.395583 GAGCCAACTGCAGCACGC 62.396 66.667 15.27 12.50 44.83 5.34
3033 4628 0.950555 TAAGAGCCAACTGCAGCACG 60.951 55.000 15.27 1.68 44.83 5.34
3034 4629 1.457346 ATAAGAGCCAACTGCAGCAC 58.543 50.000 15.27 0.00 44.83 4.40
3035 4630 2.086869 GAATAAGAGCCAACTGCAGCA 58.913 47.619 15.27 0.00 44.83 4.41
3036 4631 2.097142 CAGAATAAGAGCCAACTGCAGC 59.903 50.000 15.27 0.00 44.83 5.25
3037 4632 3.341823 ACAGAATAAGAGCCAACTGCAG 58.658 45.455 13.48 13.48 44.83 4.41
3038 4633 3.423539 ACAGAATAAGAGCCAACTGCA 57.576 42.857 0.00 0.00 44.83 4.41
3039 4634 3.311048 GCTACAGAATAAGAGCCAACTGC 59.689 47.826 0.00 0.00 41.71 4.40
3040 4635 4.569966 CAGCTACAGAATAAGAGCCAACTG 59.430 45.833 0.00 0.00 35.45 3.16
3041 4636 4.383552 CCAGCTACAGAATAAGAGCCAACT 60.384 45.833 0.00 0.00 35.45 3.16
3042 4637 3.873952 CCAGCTACAGAATAAGAGCCAAC 59.126 47.826 0.00 0.00 35.45 3.77
3043 4638 3.682718 GCCAGCTACAGAATAAGAGCCAA 60.683 47.826 0.00 0.00 35.45 4.52
3044 4639 2.158900 GCCAGCTACAGAATAAGAGCCA 60.159 50.000 0.00 0.00 35.45 4.75
3045 4640 2.103941 AGCCAGCTACAGAATAAGAGCC 59.896 50.000 0.00 0.00 35.45 4.70
3046 4641 3.389221 GAGCCAGCTACAGAATAAGAGC 58.611 50.000 0.00 0.00 35.07 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.