Multiple sequence alignment - TraesCS3B01G361500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G361500 chr3B 100.000 4431 0 0 1 4431 572838880 572834450 0.000000e+00 8183.0
1 TraesCS3B01G361500 chr3B 94.167 120 7 0 2805 2924 692838370 692838251 2.720000e-42 183.0
2 TraesCS3B01G361500 chr3A 92.760 2279 86 26 368 2608 575872921 575870684 0.000000e+00 3221.0
3 TraesCS3B01G361500 chr3A 91.005 1045 75 11 2923 3958 575870514 575869480 0.000000e+00 1391.0
4 TraesCS3B01G361500 chr3A 85.117 383 23 17 1 371 575874652 575874292 1.170000e-95 361.0
5 TraesCS3B01G361500 chr3A 89.161 286 27 3 4120 4402 575869481 575869197 1.960000e-93 353.0
6 TraesCS3B01G361500 chr3D 92.869 1753 69 22 929 2648 437735203 437733474 0.000000e+00 2494.0
7 TraesCS3B01G361500 chr3D 91.462 937 33 23 1 926 437736154 437735254 0.000000e+00 1243.0
8 TraesCS3B01G361500 chr3D 93.350 797 46 6 2923 3714 437733273 437732479 0.000000e+00 1171.0
9 TraesCS3B01G361500 chr3D 94.048 168 10 0 3957 4124 526050789 526050622 5.690000e-64 255.0
10 TraesCS3B01G361500 chr3D 92.308 182 8 3 2630 2809 437733449 437733272 2.050000e-63 254.0
11 TraesCS3B01G361500 chr3D 83.214 280 22 13 4120 4397 437701960 437701704 2.660000e-57 233.0
12 TraesCS3B01G361500 chr7B 87.885 520 55 8 1171 1689 621404352 621403840 4.900000e-169 604.0
13 TraesCS3B01G361500 chr7B 87.617 533 47 13 1171 1689 621294452 621294979 6.340000e-168 601.0
14 TraesCS3B01G361500 chr7B 86.346 520 54 11 1171 1689 586715683 586716186 6.480000e-153 551.0
15 TraesCS3B01G361500 chr7B 84.423 520 49 16 1171 1689 586704055 586704543 2.400000e-132 483.0
16 TraesCS3B01G361500 chr7B 94.167 120 7 0 2808 2927 252178056 252178175 2.720000e-42 183.0
17 TraesCS3B01G361500 chr7B 85.593 118 14 2 2954 3070 621300384 621300499 2.160000e-23 121.0
18 TraesCS3B01G361500 chr7A 87.452 518 57 7 1174 1690 654110759 654110249 1.370000e-164 590.0
19 TraesCS3B01G361500 chr7A 94.309 123 6 1 2803 2925 653631275 653631154 2.100000e-43 187.0
20 TraesCS3B01G361500 chr7D 87.140 521 51 15 1171 1689 567515214 567514708 1.070000e-160 577.0
21 TraesCS3B01G361500 chr7D 92.090 177 12 2 3951 4126 527916760 527916935 9.520000e-62 248.0
22 TraesCS3B01G361500 chr7D 92.742 124 8 1 2806 2929 321955170 321955048 1.270000e-40 178.0
23 TraesCS3B01G361500 chr6D 93.750 176 9 2 3957 4132 460272535 460272708 3.400000e-66 263.0
24 TraesCS3B01G361500 chr4D 94.083 169 10 0 3956 4124 93336683 93336851 1.580000e-64 257.0
25 TraesCS3B01G361500 chr4D 81.651 109 16 4 3830 3937 473806430 473806535 2.200000e-13 87.9
26 TraesCS3B01G361500 chr4A 94.048 168 10 0 3956 4123 428284284 428284117 5.690000e-64 255.0
27 TraesCS3B01G361500 chr4A 94.915 59 3 0 4120 4178 420574732 420574674 4.720000e-15 93.5
28 TraesCS3B01G361500 chr1A 92.655 177 13 0 3949 4125 344464739 344464915 5.690000e-64 255.0
29 TraesCS3B01G361500 chr6A 93.529 170 11 0 3956 4125 108930944 108931113 2.050000e-63 254.0
30 TraesCS3B01G361500 chr6A 78.879 232 35 12 3484 3704 603353251 603353479 1.280000e-30 145.0
31 TraesCS3B01G361500 chr5D 92.982 171 12 0 3951 4121 48983309 48983479 2.650000e-62 250.0
32 TraesCS3B01G361500 chr5D 92.969 128 7 2 2807 2934 473359884 473359759 7.570000e-43 185.0
33 TraesCS3B01G361500 chr5D 76.786 224 42 7 3484 3701 259534333 259534552 2.800000e-22 117.0
34 TraesCS3B01G361500 chr5D 75.723 173 32 10 3538 3707 525269277 525269112 1.320000e-10 78.7
35 TraesCS3B01G361500 chr1D 92.045 176 13 1 3948 4123 68439336 68439162 3.420000e-61 246.0
36 TraesCS3B01G361500 chr1D 76.889 225 39 10 3484 3701 489720912 489720694 1.010000e-21 115.0
37 TraesCS3B01G361500 chrUn 94.167 120 7 0 2805 2924 87827390 87827509 2.720000e-42 183.0
38 TraesCS3B01G361500 chrUn 94.167 120 7 0 2805 2924 309972435 309972554 2.720000e-42 183.0
39 TraesCS3B01G361500 chrUn 91.538 130 11 0 2808 2937 100620763 100620892 3.520000e-41 180.0
40 TraesCS3B01G361500 chr1B 93.443 122 8 0 2804 2925 613246049 613245928 9.790000e-42 182.0
41 TraesCS3B01G361500 chr1B 87.500 64 7 1 3888 3950 639945597 639945660 6.150000e-09 73.1
42 TraesCS3B01G361500 chr6B 81.416 226 33 6 3484 3704 694519217 694519438 4.550000e-40 176.0
43 TraesCS3B01G361500 chr5B 77.778 225 39 8 3484 3701 294566590 294566370 1.290000e-25 128.0
44 TraesCS3B01G361500 chr2D 89.535 86 8 1 3853 3937 450393484 450393399 1.690000e-19 108.0
45 TraesCS3B01G361500 chr5A 75.893 224 44 7 3484 3701 346193172 346192953 6.060000e-19 106.0
46 TraesCS3B01G361500 chr2A 96.970 33 0 1 1995 2027 15530325 15530294 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G361500 chr3B 572834450 572838880 4430 True 8183.0 8183 100.00000 1 4431 1 chr3B.!!$R1 4430
1 TraesCS3B01G361500 chr3A 575869197 575874652 5455 True 1331.5 3221 89.51075 1 4402 4 chr3A.!!$R1 4401
2 TraesCS3B01G361500 chr3D 437732479 437736154 3675 True 1290.5 2494 92.49725 1 3714 4 chr3D.!!$R3 3713
3 TraesCS3B01G361500 chr7B 621403840 621404352 512 True 604.0 604 87.88500 1171 1689 1 chr7B.!!$R1 518
4 TraesCS3B01G361500 chr7B 621294452 621294979 527 False 601.0 601 87.61700 1171 1689 1 chr7B.!!$F4 518
5 TraesCS3B01G361500 chr7B 586715683 586716186 503 False 551.0 551 86.34600 1171 1689 1 chr7B.!!$F3 518
6 TraesCS3B01G361500 chr7A 654110249 654110759 510 True 590.0 590 87.45200 1174 1690 1 chr7A.!!$R2 516
7 TraesCS3B01G361500 chr7D 567514708 567515214 506 True 577.0 577 87.14000 1171 1689 1 chr7D.!!$R2 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 338 0.458716 GACCGCTAGAGCTGGACAAC 60.459 60.000 16.0 4.68 37.85 3.32 F
615 2013 0.673985 GTTGCCCCCTTGTTGACTTC 59.326 55.000 0.0 0.00 0.00 3.01 F
1155 2637 1.447140 TTGGATCGTAGCGTGTGCC 60.447 57.895 0.0 0.00 44.31 5.01 F
2734 4314 0.248539 GTAAGCGGTGTCGGAGCTAG 60.249 60.000 0.0 0.00 40.78 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 3541 0.998145 AGATGAGGCCAAGGAAGCTT 59.002 50.0 5.01 0.0 0.00 3.74 R
2502 4023 1.048601 TATGGCAGCTAGGGTGTAGC 58.951 55.0 0.00 0.0 40.67 3.58 R
2807 4390 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
3927 5519 0.107643 TCGACCATGGCAAAGACACA 59.892 50.0 13.04 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
189 192 1.068921 GCATGGTTTGGTGCCGTTT 59.931 52.632 0.00 0.00 35.35 3.60
190 193 1.220817 GCATGGTTTGGTGCCGTTTG 61.221 55.000 0.00 0.00 35.35 2.93
218 234 2.120232 CGTACGTACGTACTCCTCGAT 58.880 52.381 40.05 13.62 46.22 3.59
220 236 1.203928 ACGTACGTACTCCTCGATCG 58.796 55.000 21.41 9.36 35.68 3.69
222 238 1.590238 CGTACGTACTCCTCGATCGTT 59.410 52.381 22.55 0.00 36.24 3.85
223 239 2.029728 CGTACGTACTCCTCGATCGTTT 59.970 50.000 22.55 0.00 36.24 3.60
224 240 2.539346 ACGTACTCCTCGATCGTTTG 57.461 50.000 15.94 6.77 0.00 2.93
225 241 2.079158 ACGTACTCCTCGATCGTTTGA 58.921 47.619 15.94 9.14 0.00 2.69
227 243 3.036633 CGTACTCCTCGATCGTTTGATG 58.963 50.000 15.94 4.73 34.09 3.07
228 244 1.927895 ACTCCTCGATCGTTTGATGC 58.072 50.000 15.94 0.00 34.09 3.91
229 245 1.212616 CTCCTCGATCGTTTGATGCC 58.787 55.000 15.94 0.00 34.09 4.40
230 246 0.824109 TCCTCGATCGTTTGATGCCT 59.176 50.000 15.94 0.00 34.09 4.75
231 247 1.207089 TCCTCGATCGTTTGATGCCTT 59.793 47.619 15.94 0.00 34.09 4.35
232 248 1.328680 CCTCGATCGTTTGATGCCTTG 59.671 52.381 15.94 0.00 34.09 3.61
233 249 2.002586 CTCGATCGTTTGATGCCTTGT 58.997 47.619 15.94 0.00 34.09 3.16
234 250 3.186909 CTCGATCGTTTGATGCCTTGTA 58.813 45.455 15.94 0.00 34.09 2.41
235 251 3.186909 TCGATCGTTTGATGCCTTGTAG 58.813 45.455 15.94 0.00 34.09 2.74
236 252 2.930040 CGATCGTTTGATGCCTTGTAGT 59.070 45.455 7.03 0.00 34.09 2.73
237 253 4.109766 CGATCGTTTGATGCCTTGTAGTA 58.890 43.478 7.03 0.00 34.09 1.82
238 254 4.207224 CGATCGTTTGATGCCTTGTAGTAG 59.793 45.833 7.03 0.00 34.09 2.57
239 255 4.530710 TCGTTTGATGCCTTGTAGTAGT 57.469 40.909 0.00 0.00 0.00 2.73
240 256 5.648178 TCGTTTGATGCCTTGTAGTAGTA 57.352 39.130 0.00 0.00 0.00 1.82
241 257 5.404946 TCGTTTGATGCCTTGTAGTAGTAC 58.595 41.667 0.37 0.37 0.00 2.73
273 289 3.186613 GGGTTGAACTTGTCTCGATGAAC 59.813 47.826 0.00 0.00 0.00 3.18
321 337 0.898326 TGACCGCTAGAGCTGGACAA 60.898 55.000 16.00 2.58 36.88 3.18
322 338 0.458716 GACCGCTAGAGCTGGACAAC 60.459 60.000 16.00 4.68 37.85 3.32
355 379 1.519758 GTACATGGAATTACGCGTCCG 59.480 52.381 18.63 1.14 36.65 4.79
411 1809 3.414700 CAGACCTGCGCCACGTTC 61.415 66.667 4.18 0.00 0.00 3.95
502 1900 2.028876 CAATGCATGCTCCTTGGATCA 58.971 47.619 20.33 0.00 0.00 2.92
531 1929 0.815615 GATGGCGTTCCCTAGCTTGG 60.816 60.000 7.29 7.29 0.00 3.61
553 1951 4.416620 GTGAACATTTGTGAAAACACGGA 58.583 39.130 0.00 0.00 0.00 4.69
554 1952 4.499040 GTGAACATTTGTGAAAACACGGAG 59.501 41.667 0.00 0.00 0.00 4.63
555 1953 4.396478 TGAACATTTGTGAAAACACGGAGA 59.604 37.500 0.00 0.00 0.00 3.71
558 1956 4.273480 ACATTTGTGAAAACACGGAGAGAG 59.727 41.667 0.00 0.00 0.00 3.20
559 1957 3.812156 TTGTGAAAACACGGAGAGAGA 57.188 42.857 0.00 0.00 0.00 3.10
560 1958 3.371102 TGTGAAAACACGGAGAGAGAG 57.629 47.619 0.00 0.00 0.00 3.20
561 1959 2.956333 TGTGAAAACACGGAGAGAGAGA 59.044 45.455 0.00 0.00 0.00 3.10
562 1960 3.004839 TGTGAAAACACGGAGAGAGAGAG 59.995 47.826 0.00 0.00 0.00 3.20
563 1961 3.253677 GTGAAAACACGGAGAGAGAGAGA 59.746 47.826 0.00 0.00 0.00 3.10
593 1991 5.438761 ACCAAAAGGAATTCGAGTTCTTG 57.561 39.130 18.64 14.77 0.00 3.02
615 2013 0.673985 GTTGCCCCCTTGTTGACTTC 59.326 55.000 0.00 0.00 0.00 3.01
844 2268 3.648982 CGCACACACACCACGCAT 61.649 61.111 0.00 0.00 0.00 4.73
845 2269 2.252260 GCACACACACCACGCATC 59.748 61.111 0.00 0.00 0.00 3.91
846 2270 2.550772 CACACACACCACGCATCG 59.449 61.111 0.00 0.00 0.00 3.84
847 2271 3.345808 ACACACACCACGCATCGC 61.346 61.111 0.00 0.00 0.00 4.58
848 2272 3.043713 CACACACCACGCATCGCT 61.044 61.111 0.00 0.00 0.00 4.93
849 2273 2.738521 ACACACCACGCATCGCTC 60.739 61.111 0.00 0.00 0.00 5.03
850 2274 3.842126 CACACCACGCATCGCTCG 61.842 66.667 0.00 0.00 0.00 5.03
1042 2522 4.262894 CCAAGACACTACTGGTACCACAAT 60.263 45.833 11.60 1.88 0.00 2.71
1083 2563 1.794222 CTGCACGAAACCGAATCCC 59.206 57.895 0.00 0.00 0.00 3.85
1155 2637 1.447140 TTGGATCGTAGCGTGTGCC 60.447 57.895 0.00 0.00 44.31 5.01
1329 2815 4.203076 ATCTACGCCGTGCCCGTC 62.203 66.667 0.00 0.00 39.88 4.79
1593 3103 2.737180 CTCCTCGGCGGCATGTAT 59.263 61.111 10.53 0.00 0.00 2.29
2031 3541 5.304357 TCTCAAGATTCCGAATACCTATGCA 59.696 40.000 0.00 0.00 0.00 3.96
2090 3600 4.345859 AGTACGTCCCTTTCATTCACAA 57.654 40.909 0.00 0.00 0.00 3.33
2122 3642 4.282703 ACCTCGTACAAACTGTATTCCTGT 59.717 41.667 0.00 0.00 35.05 4.00
2141 3661 8.677148 TTCCTGTTGTATATCTTTCCTAATGC 57.323 34.615 0.00 0.00 0.00 3.56
2213 3734 6.780706 AAAATAATCGACGACTCACTGTTT 57.219 33.333 0.00 0.00 0.00 2.83
2252 3773 3.512516 GGGCTCAGCATGTTCGCC 61.513 66.667 0.00 10.00 41.64 5.54
2431 3952 3.037249 GGTAAACCGCACGCACGA 61.037 61.111 0.00 0.00 34.06 4.35
2480 4001 6.228616 TGAGATGTGGGACGACATTTATTA 57.771 37.500 1.54 0.00 36.67 0.98
2495 4016 9.069078 CGACATTTATTACTACGTTTCTTGAGA 57.931 33.333 0.00 0.00 0.00 3.27
2500 4021 5.464030 TTACTACGTTTCTTGAGAGGCTT 57.536 39.130 0.00 0.00 0.00 4.35
2502 4023 1.884235 ACGTTTCTTGAGAGGCTTGG 58.116 50.000 0.00 0.00 0.00 3.61
2532 4061 1.656818 GCTGCCATACGGTTGCATGT 61.657 55.000 0.00 0.00 33.97 3.21
2567 4096 1.238439 AAGTGCGTGGTGAAAGATGG 58.762 50.000 0.00 0.00 0.00 3.51
2734 4314 0.248539 GTAAGCGGTGTCGGAGCTAG 60.249 60.000 0.00 0.00 40.78 3.42
2735 4315 0.679002 TAAGCGGTGTCGGAGCTAGT 60.679 55.000 0.00 0.00 40.78 2.57
2736 4316 0.679002 AAGCGGTGTCGGAGCTAGTA 60.679 55.000 0.00 0.00 40.78 1.82
2755 4335 9.959721 AGCTAGTAAATTCTAATCAAACCTTCA 57.040 29.630 0.00 0.00 0.00 3.02
2811 4394 7.861176 GCTGAAGCTGTGTAGTTATATACTC 57.139 40.000 0.00 0.00 36.85 2.59
2812 4395 6.864165 GCTGAAGCTGTGTAGTTATATACTCC 59.136 42.308 0.00 0.00 36.85 3.85
2813 4396 7.286215 TGAAGCTGTGTAGTTATATACTCCC 57.714 40.000 0.00 0.00 38.33 4.30
2814 4397 7.067421 TGAAGCTGTGTAGTTATATACTCCCT 58.933 38.462 0.00 0.00 38.33 4.20
2815 4398 7.230913 TGAAGCTGTGTAGTTATATACTCCCTC 59.769 40.741 0.00 0.00 38.33 4.30
2816 4399 6.011481 AGCTGTGTAGTTATATACTCCCTCC 58.989 44.000 0.00 0.00 38.33 4.30
2817 4400 5.106237 GCTGTGTAGTTATATACTCCCTCCG 60.106 48.000 0.00 0.00 38.33 4.63
2818 4401 5.945310 TGTGTAGTTATATACTCCCTCCGT 58.055 41.667 0.00 0.00 38.33 4.69
2819 4402 6.000219 TGTGTAGTTATATACTCCCTCCGTC 59.000 44.000 0.00 0.00 38.33 4.79
2820 4403 5.414144 GTGTAGTTATATACTCCCTCCGTCC 59.586 48.000 0.00 0.00 38.33 4.79
2821 4404 3.683802 AGTTATATACTCCCTCCGTCCG 58.316 50.000 0.00 0.00 28.23 4.79
2822 4405 2.751806 GTTATATACTCCCTCCGTCCGG 59.248 54.545 0.00 0.00 0.00 5.14
2823 4406 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
2824 4407 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2825 4408 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2826 4409 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2827 4410 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2828 4411 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2829 4412 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2830 4413 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2831 4414 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2832 4415 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2833 4416 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2834 4417 2.165845 CTCCGTCCGGAAATACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
2835 4418 2.165030 TCCGTCCGGAAATACTTGTCTC 59.835 50.000 5.23 0.00 42.05 3.36
2836 4419 2.094390 CCGTCCGGAAATACTTGTCTCA 60.094 50.000 5.23 0.00 37.50 3.27
2837 4420 3.179830 CGTCCGGAAATACTTGTCTCAG 58.820 50.000 5.23 0.00 0.00 3.35
2838 4421 3.119602 CGTCCGGAAATACTTGTCTCAGA 60.120 47.826 5.23 0.00 0.00 3.27
2839 4422 4.617530 CGTCCGGAAATACTTGTCTCAGAA 60.618 45.833 5.23 0.00 0.00 3.02
2840 4423 5.235516 GTCCGGAAATACTTGTCTCAGAAA 58.764 41.667 5.23 0.00 0.00 2.52
2841 4424 5.875359 GTCCGGAAATACTTGTCTCAGAAAT 59.125 40.000 5.23 0.00 0.00 2.17
2842 4425 5.874810 TCCGGAAATACTTGTCTCAGAAATG 59.125 40.000 0.00 0.00 0.00 2.32
2843 4426 5.447818 CCGGAAATACTTGTCTCAGAAATGC 60.448 44.000 0.00 0.00 0.00 3.56
2844 4427 5.122239 CGGAAATACTTGTCTCAGAAATGCA 59.878 40.000 0.00 0.00 0.00 3.96
2845 4428 6.183360 CGGAAATACTTGTCTCAGAAATGCAT 60.183 38.462 0.00 0.00 0.00 3.96
2846 4429 7.011389 CGGAAATACTTGTCTCAGAAATGCATA 59.989 37.037 0.00 0.00 0.00 3.14
2847 4430 8.677300 GGAAATACTTGTCTCAGAAATGCATAA 58.323 33.333 0.00 0.00 0.00 1.90
2852 4435 8.752766 ACTTGTCTCAGAAATGCATAAAAATG 57.247 30.769 0.00 0.00 0.00 2.32
2853 4436 7.816031 ACTTGTCTCAGAAATGCATAAAAATGG 59.184 33.333 0.00 0.00 0.00 3.16
2854 4437 7.465353 TGTCTCAGAAATGCATAAAAATGGA 57.535 32.000 0.00 0.00 0.00 3.41
2855 4438 8.070034 TGTCTCAGAAATGCATAAAAATGGAT 57.930 30.769 0.00 0.00 33.93 3.41
2856 4439 7.977293 TGTCTCAGAAATGCATAAAAATGGATG 59.023 33.333 0.00 0.00 32.82 3.51
2857 4440 7.977853 GTCTCAGAAATGCATAAAAATGGATGT 59.022 33.333 0.00 0.00 32.82 3.06
2858 4441 9.187996 TCTCAGAAATGCATAAAAATGGATGTA 57.812 29.630 0.00 0.00 32.82 2.29
2859 4442 9.976511 CTCAGAAATGCATAAAAATGGATGTAT 57.023 29.630 0.00 0.00 32.82 2.29
2894 4477 8.423906 AAATACGTCTAGATACATCCATTCCT 57.576 34.615 0.00 0.00 0.00 3.36
2895 4478 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
2896 4479 4.767928 ACGTCTAGATACATCCATTCCTCC 59.232 45.833 0.00 0.00 0.00 4.30
2897 4480 4.142578 CGTCTAGATACATCCATTCCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
2898 4481 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
2899 4482 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
2900 4483 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
2901 4484 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
2902 4485 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
2903 4486 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
2904 4487 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
2905 4488 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
2906 4489 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
2907 4490 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
2908 4491 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
2909 4492 3.555956 CCATTCCTCCGACAAGTATTTCG 59.444 47.826 0.00 0.00 34.93 3.46
2916 4499 3.226346 CGACAAGTATTTCGGGACTGA 57.774 47.619 0.00 0.00 0.00 3.41
2917 4500 3.782046 CGACAAGTATTTCGGGACTGAT 58.218 45.455 0.00 0.00 0.00 2.90
2918 4501 3.551890 CGACAAGTATTTCGGGACTGATG 59.448 47.826 0.00 0.00 0.00 3.07
2919 4502 3.871594 GACAAGTATTTCGGGACTGATGG 59.128 47.826 0.00 0.00 0.00 3.51
2920 4503 3.517901 ACAAGTATTTCGGGACTGATGGA 59.482 43.478 0.00 0.00 0.00 3.41
2921 4504 4.122776 CAAGTATTTCGGGACTGATGGAG 58.877 47.826 0.00 0.00 0.00 3.86
2928 4511 3.905968 TCGGGACTGATGGAGTATGTTA 58.094 45.455 0.00 0.00 33.83 2.41
2999 4584 0.391130 TGTTCATACAGGCGGCACTC 60.391 55.000 13.08 0.00 0.00 3.51
3096 4681 7.305474 CGTTTCTTTACCAGATTTTGCTACAT 58.695 34.615 0.00 0.00 0.00 2.29
3178 4763 6.369629 TGTTCTTTTCAGGGTAATTCTTGGA 58.630 36.000 0.00 0.00 0.00 3.53
3241 4826 8.818622 TTCTATTAGGGCTATAATCGAGCTAA 57.181 34.615 0.00 0.00 39.98 3.09
3280 4865 1.135859 CCTGAAAAGCGCATGTCAGAC 60.136 52.381 29.52 5.16 39.94 3.51
3286 4871 0.099613 AGCGCATGTCAGACGTAGAG 59.900 55.000 11.47 0.00 0.00 2.43
3312 4897 0.040958 CCGCACAACAGTTGAAGAGC 60.041 55.000 20.56 15.26 0.00 4.09
3361 4949 4.396166 CCAACTGGACTCCAACATGATAAC 59.604 45.833 0.00 0.00 37.39 1.89
3437 5026 9.793259 AATCAATAGAAGTTCACCTTTTCACTA 57.207 29.630 5.50 0.00 32.03 2.74
3440 5029 9.884465 CAATAGAAGTTCACCTTTTCACTAAAG 57.116 33.333 5.50 0.00 42.41 1.85
3447 5036 9.574516 AGTTCACCTTTTCACTAAAGTATGATT 57.425 29.630 0.00 0.00 41.41 2.57
3470 5059 6.606234 TGTAATGTTAGTTGAAACTTCGCA 57.394 33.333 0.21 0.00 40.37 5.10
3481 5070 4.942852 TGAAACTTCGCATTGGACAAAAT 58.057 34.783 0.00 0.00 0.00 1.82
3507 5096 5.982356 ACTACCTCCTTTCCGGTTTATTAC 58.018 41.667 0.00 0.00 34.76 1.89
3642 5232 7.307573 GGGATATACAACTTGTATTACGTTGGC 60.308 40.741 17.63 2.34 40.40 4.52
3656 5246 9.821662 GTATTACGTTGGCTAAATTATCAATCC 57.178 33.333 0.00 0.00 0.00 3.01
3673 5263 3.944055 ATCCAGGTAGATACACGCATC 57.056 47.619 0.00 0.00 0.00 3.91
3737 5327 5.070313 TCGTACACCCACCTTAACTAAGTTT 59.930 40.000 0.00 0.00 0.00 2.66
3738 5328 5.178067 CGTACACCCACCTTAACTAAGTTTG 59.822 44.000 0.00 0.00 0.00 2.93
3739 5329 5.120054 ACACCCACCTTAACTAAGTTTGT 57.880 39.130 0.00 0.00 0.00 2.83
3740 5330 5.512298 ACACCCACCTTAACTAAGTTTGTT 58.488 37.500 7.80 7.80 0.00 2.83
3741 5331 6.661777 ACACCCACCTTAACTAAGTTTGTTA 58.338 36.000 5.90 5.90 0.00 2.41
3742 5332 6.543465 ACACCCACCTTAACTAAGTTTGTTAC 59.457 38.462 9.07 0.00 30.70 2.50
3743 5333 6.769341 CACCCACCTTAACTAAGTTTGTTACT 59.231 38.462 9.07 0.00 39.32 2.24
3759 5349 9.893305 AGTTTGTTACTTACTTTCAATGCATAC 57.107 29.630 0.00 0.00 31.29 2.39
3764 5354 4.394920 ACTTACTTTCAATGCATACCACCG 59.605 41.667 0.00 0.00 0.00 4.94
3768 5358 3.847671 TTCAATGCATACCACCGGATA 57.152 42.857 9.46 0.00 0.00 2.59
3777 5367 4.929808 GCATACCACCGGATAAGATTACAG 59.070 45.833 9.46 0.00 0.00 2.74
3779 5369 4.667519 ACCACCGGATAAGATTACAGTC 57.332 45.455 9.46 0.00 0.00 3.51
3787 5377 7.175293 ACCGGATAAGATTACAGTCTACATCTC 59.825 40.741 9.46 0.00 0.00 2.75
3790 5380 8.519526 GGATAAGATTACAGTCTACATCTCCTG 58.480 40.741 0.00 0.00 0.00 3.86
3796 5386 9.685828 GATTACAGTCTACATCTCCTGATAAAC 57.314 37.037 0.00 0.00 0.00 2.01
3804 5394 6.090483 ACATCTCCTGATAAACGGATAGTG 57.910 41.667 0.00 0.00 0.00 2.74
3808 5398 4.028131 TCCTGATAAACGGATAGTGTGGT 58.972 43.478 0.00 0.00 0.00 4.16
3822 5412 4.273148 AGTGTGGTCTTCTTACATGGTC 57.727 45.455 0.00 0.00 0.00 4.02
3828 5419 6.653320 TGTGGTCTTCTTACATGGTCATTTAC 59.347 38.462 0.00 0.00 0.00 2.01
3848 5439 6.721571 TTACTTTTAAAGACATGCTCTCCG 57.278 37.500 12.02 0.00 0.00 4.63
3849 5440 4.894784 ACTTTTAAAGACATGCTCTCCGA 58.105 39.130 12.02 0.00 0.00 4.55
3886 5478 1.064240 TGGAGTAGGCTACGATGGTGA 60.064 52.381 18.41 0.00 0.00 4.02
3896 5488 1.234821 ACGATGGTGACGCAAATTGT 58.765 45.000 0.00 0.00 0.00 2.71
3916 5508 3.073798 TGTGAGATGAGGCAAAACCCTAA 59.926 43.478 0.00 0.00 40.58 2.69
3924 5516 4.098807 TGAGGCAAAACCCTAAGTGTTTTC 59.901 41.667 0.00 0.00 42.38 2.29
3927 5519 4.261867 GGCAAAACCCTAAGTGTTTTCGAT 60.262 41.667 0.00 0.00 42.38 3.59
3937 5529 3.952535 AGTGTTTTCGATGTGTCTTTGC 58.047 40.909 0.00 0.00 0.00 3.68
3939 5531 2.685388 TGTTTTCGATGTGTCTTTGCCA 59.315 40.909 0.00 0.00 0.00 4.92
3940 5532 3.317711 TGTTTTCGATGTGTCTTTGCCAT 59.682 39.130 0.00 0.00 0.00 4.40
3941 5533 3.557577 TTTCGATGTGTCTTTGCCATG 57.442 42.857 0.00 0.00 0.00 3.66
3946 5539 0.107643 TGTGTCTTTGCCATGGTCGA 59.892 50.000 14.67 2.65 0.00 4.20
3958 5551 4.935205 TGCCATGGTCGATAAGCATTATAC 59.065 41.667 14.67 0.00 43.52 1.47
3959 5552 5.178797 GCCATGGTCGATAAGCATTATACT 58.821 41.667 14.67 0.00 43.52 2.12
3960 5553 5.292101 GCCATGGTCGATAAGCATTATACTC 59.708 44.000 14.67 0.00 43.52 2.59
3961 5554 5.812642 CCATGGTCGATAAGCATTATACTCC 59.187 44.000 2.57 0.00 43.52 3.85
3962 5555 5.401531 TGGTCGATAAGCATTATACTCCC 57.598 43.478 0.00 0.00 42.35 4.30
3963 5556 5.084519 TGGTCGATAAGCATTATACTCCCT 58.915 41.667 0.00 0.00 42.35 4.20
3964 5557 5.185249 TGGTCGATAAGCATTATACTCCCTC 59.815 44.000 0.00 0.00 42.35 4.30
3965 5558 5.419471 GGTCGATAAGCATTATACTCCCTCT 59.581 44.000 0.00 0.00 42.35 3.69
3966 5559 6.326375 GTCGATAAGCATTATACTCCCTCTG 58.674 44.000 0.00 0.00 42.35 3.35
3967 5560 6.010850 TCGATAAGCATTATACTCCCTCTGT 58.989 40.000 0.00 0.00 42.35 3.41
3968 5561 6.493802 TCGATAAGCATTATACTCCCTCTGTT 59.506 38.462 0.00 0.00 42.35 3.16
3969 5562 7.015292 TCGATAAGCATTATACTCCCTCTGTTT 59.985 37.037 0.00 0.00 42.35 2.83
3970 5563 7.329717 CGATAAGCATTATACTCCCTCTGTTTC 59.670 40.741 0.00 0.00 42.35 2.78
3971 5564 5.297569 AGCATTATACTCCCTCTGTTTCC 57.702 43.478 0.00 0.00 0.00 3.13
3972 5565 4.721776 AGCATTATACTCCCTCTGTTTCCA 59.278 41.667 0.00 0.00 0.00 3.53
3973 5566 5.191722 AGCATTATACTCCCTCTGTTTCCAA 59.808 40.000 0.00 0.00 0.00 3.53
3974 5567 5.885912 GCATTATACTCCCTCTGTTTCCAAA 59.114 40.000 0.00 0.00 0.00 3.28
3975 5568 6.547510 GCATTATACTCCCTCTGTTTCCAAAT 59.452 38.462 0.00 0.00 0.00 2.32
3976 5569 7.719633 GCATTATACTCCCTCTGTTTCCAAATA 59.280 37.037 0.00 0.00 0.00 1.40
3977 5570 9.799106 CATTATACTCCCTCTGTTTCCAAATAT 57.201 33.333 0.00 0.00 0.00 1.28
3981 5574 7.272144 ACTCCCTCTGTTTCCAAATATAAGT 57.728 36.000 0.00 0.00 0.00 2.24
3982 5575 7.339482 ACTCCCTCTGTTTCCAAATATAAGTC 58.661 38.462 0.00 0.00 0.00 3.01
3983 5576 7.182930 ACTCCCTCTGTTTCCAAATATAAGTCT 59.817 37.037 0.00 0.00 0.00 3.24
3984 5577 7.928873 TCCCTCTGTTTCCAAATATAAGTCTT 58.071 34.615 0.00 0.00 0.00 3.01
3985 5578 8.390921 TCCCTCTGTTTCCAAATATAAGTCTTT 58.609 33.333 0.00 0.00 0.00 2.52
3986 5579 8.678199 CCCTCTGTTTCCAAATATAAGTCTTTC 58.322 37.037 0.00 0.00 0.00 2.62
3987 5580 9.454859 CCTCTGTTTCCAAATATAAGTCTTTCT 57.545 33.333 0.00 0.00 0.00 2.52
4005 5598 9.784531 AGTCTTTCTAGAGATTTCAACAAATGA 57.215 29.630 0.00 0.00 31.94 2.57
4006 5599 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
4007 5600 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
4010 5603 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
4014 5607 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
4015 5608 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
4016 5609 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
4017 5610 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
4018 5611 4.868171 TCAACAAATGACTACATACGGAGC 59.132 41.667 0.00 0.00 35.50 4.70
4019 5612 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
4020 5613 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
4021 5614 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
4022 5615 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
4023 5616 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
4024 5617 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
4025 5618 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
4026 5619 5.483811 TGACTACATACGGAGCAAAATGAA 58.516 37.500 0.00 0.00 0.00 2.57
4027 5620 6.112734 TGACTACATACGGAGCAAAATGAAT 58.887 36.000 0.00 0.00 0.00 2.57
4028 5621 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
4029 5622 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
4030 5623 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
4031 5624 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
4032 5625 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
4033 5626 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
4034 5627 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
4035 5628 6.949352 ACGGAGCAAAATGAATGAATCTAT 57.051 33.333 0.00 0.00 0.00 1.98
4036 5629 9.725019 ATACGGAGCAAAATGAATGAATCTATA 57.275 29.630 0.00 0.00 0.00 1.31
4037 5630 7.865707 ACGGAGCAAAATGAATGAATCTATAC 58.134 34.615 0.00 0.00 0.00 1.47
4038 5631 7.716998 ACGGAGCAAAATGAATGAATCTATACT 59.283 33.333 0.00 0.00 0.00 2.12
4039 5632 8.562892 CGGAGCAAAATGAATGAATCTATACTT 58.437 33.333 0.00 0.00 0.00 2.24
4067 5660 9.851686 AAAATATGTCTACATACATCCACATGT 57.148 29.630 4.98 0.00 45.73 3.21
4068 5661 9.851686 AAATATGTCTACATACATCCACATGTT 57.148 29.630 4.98 0.00 43.45 2.71
4069 5662 8.837788 ATATGTCTACATACATCCACATGTTG 57.162 34.615 4.98 0.00 43.45 3.33
4070 5663 6.048732 TGTCTACATACATCCACATGTTGT 57.951 37.500 6.86 6.86 40.66 3.32
4071 5664 6.472016 TGTCTACATACATCCACATGTTGTT 58.528 36.000 6.95 0.00 40.66 2.83
4072 5665 6.371271 TGTCTACATACATCCACATGTTGTTG 59.629 38.462 6.95 6.70 40.66 3.33
4073 5666 6.371548 GTCTACATACATCCACATGTTGTTGT 59.628 38.462 15.55 15.55 40.66 3.32
4074 5667 5.627499 ACATACATCCACATGTTGTTGTC 57.373 39.130 14.88 0.00 40.66 3.18
4075 5668 4.458989 ACATACATCCACATGTTGTTGTCC 59.541 41.667 14.88 0.00 40.66 4.02
4076 5669 2.942804 ACATCCACATGTTGTTGTCCA 58.057 42.857 7.61 0.00 40.66 4.02
4077 5670 3.499338 ACATCCACATGTTGTTGTCCAT 58.501 40.909 7.61 0.00 40.66 3.41
4078 5671 3.896888 ACATCCACATGTTGTTGTCCATT 59.103 39.130 7.61 0.00 40.66 3.16
4079 5672 4.344679 ACATCCACATGTTGTTGTCCATTT 59.655 37.500 7.61 0.00 40.66 2.32
4080 5673 4.319139 TCCACATGTTGTTGTCCATTTG 57.681 40.909 0.00 0.00 0.00 2.32
4081 5674 3.956848 TCCACATGTTGTTGTCCATTTGA 59.043 39.130 0.00 0.00 0.00 2.69
4082 5675 4.403752 TCCACATGTTGTTGTCCATTTGAA 59.596 37.500 0.00 0.00 0.00 2.69
4083 5676 5.105187 TCCACATGTTGTTGTCCATTTGAAA 60.105 36.000 0.00 0.00 0.00 2.69
4084 5677 5.759273 CCACATGTTGTTGTCCATTTGAAAT 59.241 36.000 0.00 0.00 0.00 2.17
4085 5678 6.292973 CCACATGTTGTTGTCCATTTGAAATG 60.293 38.462 10.84 10.84 0.00 2.32
4086 5679 6.258287 CACATGTTGTTGTCCATTTGAAATGT 59.742 34.615 15.93 0.00 0.00 2.71
4087 5680 6.479660 ACATGTTGTTGTCCATTTGAAATGTC 59.520 34.615 15.93 9.53 0.00 3.06
4088 5681 6.219417 TGTTGTTGTCCATTTGAAATGTCT 57.781 33.333 15.93 0.00 0.00 3.41
4089 5682 7.340122 TGTTGTTGTCCATTTGAAATGTCTA 57.660 32.000 15.93 4.32 0.00 2.59
4090 5683 7.776107 TGTTGTTGTCCATTTGAAATGTCTAA 58.224 30.769 15.93 5.71 0.00 2.10
4091 5684 8.253810 TGTTGTTGTCCATTTGAAATGTCTAAA 58.746 29.630 15.93 3.49 0.00 1.85
4092 5685 9.092876 GTTGTTGTCCATTTGAAATGTCTAAAA 57.907 29.630 15.93 5.56 0.00 1.52
4093 5686 9.658799 TTGTTGTCCATTTGAAATGTCTAAAAA 57.341 25.926 15.93 6.88 0.00 1.94
4094 5687 9.092876 TGTTGTCCATTTGAAATGTCTAAAAAC 57.907 29.630 15.93 10.16 0.00 2.43
4095 5688 9.092876 GTTGTCCATTTGAAATGTCTAAAAACA 57.907 29.630 15.93 6.43 0.00 2.83
4096 5689 8.641499 TGTCCATTTGAAATGTCTAAAAACAC 57.359 30.769 15.93 1.00 30.55 3.32
4097 5690 8.474025 TGTCCATTTGAAATGTCTAAAAACACT 58.526 29.630 15.93 0.00 30.55 3.55
4098 5691 9.313118 GTCCATTTGAAATGTCTAAAAACACTT 57.687 29.630 15.93 0.00 30.55 3.16
4115 5708 8.502105 AAAACACTTATATTTAGGAACGGAGG 57.498 34.615 0.00 0.00 0.00 4.30
4116 5709 6.170846 ACACTTATATTTAGGAACGGAGGG 57.829 41.667 0.00 0.00 0.00 4.30
4117 5710 5.901276 ACACTTATATTTAGGAACGGAGGGA 59.099 40.000 0.00 0.00 0.00 4.20
4118 5711 6.041751 ACACTTATATTTAGGAACGGAGGGAG 59.958 42.308 0.00 0.00 0.00 4.30
4119 5712 6.041751 CACTTATATTTAGGAACGGAGGGAGT 59.958 42.308 0.00 0.00 0.00 3.85
4120 5713 7.232127 CACTTATATTTAGGAACGGAGGGAGTA 59.768 40.741 0.00 0.00 0.00 2.59
4128 5721 4.018233 AGGAACGGAGGGAGTATATAGGAG 60.018 50.000 0.00 0.00 0.00 3.69
4145 5738 1.872313 GGAGTACCAGAGACGGTATCG 59.128 57.143 0.00 0.00 43.35 2.92
4176 5769 2.736721 CACGATCACAAATCGACTTGGT 59.263 45.455 11.74 0.00 43.59 3.67
4178 5771 3.432252 ACGATCACAAATCGACTTGGTTC 59.568 43.478 11.74 3.94 43.59 3.62
4216 5809 8.320617 ACTTACCGGACAATAAACCATAAACTA 58.679 33.333 9.46 0.00 0.00 2.24
4257 5850 4.864334 CCAGGCTAGGCAAGGGCG 62.864 72.222 19.70 0.00 42.47 6.13
4276 5871 1.634702 GCGCGTGATCTTCTCTTTCT 58.365 50.000 8.43 0.00 0.00 2.52
4287 5882 7.544217 GTGATCTTCTCTTTCTCTCCTTAACAC 59.456 40.741 0.00 0.00 0.00 3.32
4312 5907 2.222027 CTGAGTGTGGTGGAAAGAACC 58.778 52.381 0.00 0.00 38.26 3.62
4315 5910 1.499007 AGTGTGGTGGAAAGAACCCAT 59.501 47.619 0.00 0.00 36.83 4.00
4332 5927 8.798975 AGAACCCATTATATAAAGAGGTCTCA 57.201 34.615 12.37 0.00 0.00 3.27
4339 5934 9.868277 CATTATATAAAGAGGTCTCACATCTCC 57.132 37.037 0.00 0.00 38.42 3.71
4348 5943 3.259374 GGTCTCACATCTCCTCAACTTCA 59.741 47.826 0.00 0.00 0.00 3.02
4381 5977 3.942748 TCACTTCCATTTTATACACGGGC 59.057 43.478 0.00 0.00 0.00 6.13
4387 5983 4.399934 TCCATTTTATACACGGGCCTTTTC 59.600 41.667 0.84 0.00 0.00 2.29
4388 5984 4.347813 CATTTTATACACGGGCCTTTTCG 58.652 43.478 0.84 0.00 0.00 3.46
4398 5994 1.133216 GGGCCTTTTCGAGAATTCAGC 59.867 52.381 8.44 0.00 0.00 4.26
4401 5997 3.305335 GGCCTTTTCGAGAATTCAGCAAA 60.305 43.478 8.44 3.76 0.00 3.68
4402 5998 3.670523 GCCTTTTCGAGAATTCAGCAAAC 59.329 43.478 8.44 0.00 0.00 2.93
4403 5999 3.908382 CCTTTTCGAGAATTCAGCAAACG 59.092 43.478 8.44 3.95 0.00 3.60
4404 6000 4.527564 CTTTTCGAGAATTCAGCAAACGT 58.472 39.130 8.44 0.00 0.00 3.99
4405 6001 5.333798 CCTTTTCGAGAATTCAGCAAACGTA 60.334 40.000 8.44 0.00 0.00 3.57
4406 6002 4.640805 TTCGAGAATTCAGCAAACGTAC 57.359 40.909 8.44 0.00 0.00 3.67
4407 6003 3.909430 TCGAGAATTCAGCAAACGTACT 58.091 40.909 8.44 0.00 0.00 2.73
4408 6004 3.918591 TCGAGAATTCAGCAAACGTACTC 59.081 43.478 8.44 0.00 0.00 2.59
4409 6005 3.060895 CGAGAATTCAGCAAACGTACTCC 59.939 47.826 8.44 0.00 0.00 3.85
4410 6006 3.335579 AGAATTCAGCAAACGTACTCCC 58.664 45.455 8.44 0.00 0.00 4.30
4411 6007 3.008049 AGAATTCAGCAAACGTACTCCCT 59.992 43.478 8.44 0.00 0.00 4.20
4412 6008 2.450609 TTCAGCAAACGTACTCCCTC 57.549 50.000 0.00 0.00 0.00 4.30
4413 6009 0.606604 TCAGCAAACGTACTCCCTCC 59.393 55.000 0.00 0.00 0.00 4.30
4414 6010 0.320374 CAGCAAACGTACTCCCTCCA 59.680 55.000 0.00 0.00 0.00 3.86
4415 6011 1.066143 CAGCAAACGTACTCCCTCCAT 60.066 52.381 0.00 0.00 0.00 3.41
4416 6012 1.628846 AGCAAACGTACTCCCTCCATT 59.371 47.619 0.00 0.00 0.00 3.16
4417 6013 2.039879 AGCAAACGTACTCCCTCCATTT 59.960 45.455 0.00 0.00 0.00 2.32
4418 6014 2.817844 GCAAACGTACTCCCTCCATTTT 59.182 45.455 0.00 0.00 0.00 1.82
4419 6015 3.365969 GCAAACGTACTCCCTCCATTTTG 60.366 47.826 0.00 0.00 0.00 2.44
4420 6016 4.069304 CAAACGTACTCCCTCCATTTTGA 58.931 43.478 0.00 0.00 0.00 2.69
4421 6017 4.360951 AACGTACTCCCTCCATTTTGAA 57.639 40.909 0.00 0.00 0.00 2.69
4422 6018 4.360951 ACGTACTCCCTCCATTTTGAAA 57.639 40.909 0.00 0.00 0.00 2.69
4423 6019 4.918588 ACGTACTCCCTCCATTTTGAAAT 58.081 39.130 0.00 0.00 0.00 2.17
4424 6020 6.057321 ACGTACTCCCTCCATTTTGAAATA 57.943 37.500 0.00 0.00 0.00 1.40
4425 6021 6.478129 ACGTACTCCCTCCATTTTGAAATAA 58.522 36.000 0.00 0.00 0.00 1.40
4426 6022 6.598064 ACGTACTCCCTCCATTTTGAAATAAG 59.402 38.462 0.00 0.00 0.00 1.73
4427 6023 6.598064 CGTACTCCCTCCATTTTGAAATAAGT 59.402 38.462 0.00 0.00 0.00 2.24
4428 6024 6.840780 ACTCCCTCCATTTTGAAATAAGTG 57.159 37.500 0.00 0.00 0.00 3.16
4429 6025 6.314917 ACTCCCTCCATTTTGAAATAAGTGT 58.685 36.000 0.00 0.00 0.00 3.55
4430 6026 6.434340 ACTCCCTCCATTTTGAAATAAGTGTC 59.566 38.462 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 122 1.314730 AACCACACGATGTTTGACCC 58.685 50.000 0.00 0.00 0.00 4.46
189 192 3.663078 CGTACGTACGTCTCTTGCA 57.337 52.632 33.95 1.73 44.13 4.08
216 232 5.109903 ACTACTACAAGGCATCAAACGATC 58.890 41.667 0.00 0.00 0.00 3.69
218 234 4.530710 ACTACTACAAGGCATCAAACGA 57.469 40.909 0.00 0.00 0.00 3.85
220 236 5.166398 ACGTACTACTACAAGGCATCAAAC 58.834 41.667 0.00 0.00 0.00 2.93
222 238 5.447683 CGTACGTACTACTACAAGGCATCAA 60.448 44.000 22.55 0.00 0.00 2.57
223 239 4.034394 CGTACGTACTACTACAAGGCATCA 59.966 45.833 22.55 0.00 0.00 3.07
224 240 4.034510 ACGTACGTACTACTACAAGGCATC 59.965 45.833 21.41 0.00 0.00 3.91
225 241 3.941483 ACGTACGTACTACTACAAGGCAT 59.059 43.478 21.41 0.00 0.00 4.40
227 243 4.823204 GTACGTACGTACTACTACAAGGC 58.177 47.826 38.40 17.01 45.30 4.35
273 289 2.963854 CGCCTGCCATGCTCTACG 60.964 66.667 0.00 0.00 0.00 3.51
355 379 2.995482 CATTAGGCACGACGACGC 59.005 61.111 7.30 3.38 43.96 5.19
408 1806 1.241990 GGGCGGTTTTCCTCCTGAAC 61.242 60.000 0.00 0.00 43.90 3.18
410 1808 1.497309 ATGGGCGGTTTTCCTCCTGA 61.497 55.000 0.00 0.00 43.90 3.86
411 1809 1.000896 ATGGGCGGTTTTCCTCCTG 60.001 57.895 0.00 0.00 43.90 3.86
491 1889 7.385267 CCATCTAATCTAACTGATCCAAGGAG 58.615 42.308 0.00 0.00 33.57 3.69
502 1900 3.967987 AGGGAACGCCATCTAATCTAACT 59.032 43.478 0.00 0.00 35.15 2.24
553 1951 5.772393 TTGGTTACTCTCTCTCTCTCTCT 57.228 43.478 0.00 0.00 0.00 3.10
554 1952 6.127730 CCTTTTGGTTACTCTCTCTCTCTCTC 60.128 46.154 0.00 0.00 34.07 3.20
555 1953 5.714806 CCTTTTGGTTACTCTCTCTCTCTCT 59.285 44.000 0.00 0.00 34.07 3.10
558 1956 5.986501 TCCTTTTGGTTACTCTCTCTCTC 57.013 43.478 0.00 0.00 41.38 3.20
559 1957 6.943899 ATTCCTTTTGGTTACTCTCTCTCT 57.056 37.500 0.00 0.00 41.38 3.10
560 1958 6.311690 CGAATTCCTTTTGGTTACTCTCTCTC 59.688 42.308 0.00 0.00 41.38 3.20
561 1959 6.014499 TCGAATTCCTTTTGGTTACTCTCTCT 60.014 38.462 0.00 0.00 41.38 3.10
562 1960 6.164176 TCGAATTCCTTTTGGTTACTCTCTC 58.836 40.000 0.00 0.00 41.38 3.20
563 1961 6.110411 TCGAATTCCTTTTGGTTACTCTCT 57.890 37.500 0.00 0.00 41.38 3.10
593 1991 0.104120 GTCAACAAGGGGGCAACAAC 59.896 55.000 0.00 0.00 39.74 3.32
615 2013 5.220700 CGACTAGTAGTTGTCAGAGCCTAAG 60.221 48.000 3.85 0.00 33.18 2.18
847 2271 2.431942 AAAGGTGGTACGCGCGAG 60.432 61.111 39.36 10.29 41.51 5.03
848 2272 2.431260 GAAAGGTGGTACGCGCGA 60.431 61.111 39.36 17.83 41.51 5.87
849 2273 2.431942 AGAAAGGTGGTACGCGCG 60.432 61.111 30.96 30.96 41.51 6.86
850 2274 2.388232 CCAGAAAGGTGGTACGCGC 61.388 63.158 5.73 0.00 41.51 6.86
851 2275 3.870606 CCAGAAAGGTGGTACGCG 58.129 61.111 3.53 3.53 41.51 6.01
941 2417 1.669760 GGTTGACGCGGATTGGACA 60.670 57.895 12.47 0.00 0.00 4.02
1083 2563 0.028242 CCTCTCTGAATCGACGTCGG 59.972 60.000 35.05 20.02 40.29 4.79
1155 2637 1.040646 TCATGGCGCCCTAGTAGAAG 58.959 55.000 26.77 0.00 0.00 2.85
1329 2815 3.054875 TGGAGACCATGTTGAAGATGAGG 60.055 47.826 3.63 0.00 0.00 3.86
1593 3103 2.534011 TCCTTGGACATGGCCCCA 60.534 61.111 17.19 7.42 0.00 4.96
1698 3208 4.854924 CCATCCATGGCCGTCGCA 62.855 66.667 6.96 0.00 41.75 5.10
1854 3364 3.372206 CCAGATCTTTTTGTGCCGTAGAG 59.628 47.826 0.00 0.00 0.00 2.43
1872 3382 1.742831 GTTGTTGTGTTGTCTGCCAGA 59.257 47.619 0.00 0.00 0.00 3.86
1985 3495 1.467920 CTTCTTCCCTGCCATCAACC 58.532 55.000 0.00 0.00 0.00 3.77
2031 3541 0.998145 AGATGAGGCCAAGGAAGCTT 59.002 50.000 5.01 0.00 0.00 3.74
2090 3600 7.166691 ACAGTTTGTACGAGGTAATATGAGT 57.833 36.000 0.00 0.00 0.00 3.41
2122 3642 8.773645 CGTGAATGCATTAGGAAAGATATACAA 58.226 33.333 12.97 0.00 0.00 2.41
2141 3661 4.166523 ACACAAGTAGATCGACGTGAATG 58.833 43.478 24.02 16.29 33.61 2.67
2252 3773 1.299165 CGCTATGAACGTCCCCGAG 60.299 63.158 0.00 0.00 37.88 4.63
2315 3836 1.556911 AGGAACTTGAGCACCATCGAT 59.443 47.619 0.00 0.00 27.25 3.59
2466 3987 7.746526 AGAAACGTAGTAATAAATGTCGTCC 57.253 36.000 0.00 0.00 45.00 4.79
2495 4016 1.627297 GCTAGGGTGTAGCCAAGCCT 61.627 60.000 2.63 6.83 46.94 4.58
2500 4021 2.367202 GGCAGCTAGGGTGTAGCCA 61.367 63.158 2.63 0.00 41.25 4.75
2502 4023 1.048601 TATGGCAGCTAGGGTGTAGC 58.951 55.000 0.00 0.00 40.67 3.58
2532 4061 3.656559 GCACTTTCCGTTACTACTGGAA 58.343 45.455 0.00 0.00 36.14 3.53
2694 4269 7.306983 GCTTACTTTAGTTTGTTCAACTAGCGA 60.307 37.037 0.00 0.00 46.61 4.93
2760 4341 9.627123 TTTGGTATAAACTCTGAAGGGATATTG 57.373 33.333 0.00 0.00 0.00 1.90
2763 4344 7.127339 AGCTTTGGTATAAACTCTGAAGGGATA 59.873 37.037 0.00 0.00 0.00 2.59
2807 4390 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2808 4391 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2809 4392 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2810 4393 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2811 4394 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2812 4395 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2813 4396 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
2814 4397 2.165030 GAGACAAGTATTTCCGGACGGA 59.835 50.000 1.83 9.76 43.52 4.69
2815 4398 2.094390 TGAGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
2816 4399 3.119602 TCTGAGACAAGTATTTCCGGACG 60.120 47.826 1.83 0.00 0.00 4.79
2817 4400 4.451629 TCTGAGACAAGTATTTCCGGAC 57.548 45.455 1.83 0.00 0.00 4.79
2818 4401 5.477607 TTTCTGAGACAAGTATTTCCGGA 57.522 39.130 0.00 0.00 0.00 5.14
2819 4402 5.447818 GCATTTCTGAGACAAGTATTTCCGG 60.448 44.000 0.00 0.00 0.00 5.14
2820 4403 5.122239 TGCATTTCTGAGACAAGTATTTCCG 59.878 40.000 0.00 0.00 0.00 4.30
2821 4404 6.500684 TGCATTTCTGAGACAAGTATTTCC 57.499 37.500 0.00 0.00 0.00 3.13
2826 4409 9.844790 CATTTTTATGCATTTCTGAGACAAGTA 57.155 29.630 3.54 0.00 0.00 2.24
2827 4410 7.816031 CCATTTTTATGCATTTCTGAGACAAGT 59.184 33.333 3.54 0.00 0.00 3.16
2828 4411 8.030692 TCCATTTTTATGCATTTCTGAGACAAG 58.969 33.333 3.54 0.00 0.00 3.16
2829 4412 7.894708 TCCATTTTTATGCATTTCTGAGACAA 58.105 30.769 3.54 0.00 0.00 3.18
2830 4413 7.465353 TCCATTTTTATGCATTTCTGAGACA 57.535 32.000 3.54 0.00 0.00 3.41
2831 4414 7.977853 ACATCCATTTTTATGCATTTCTGAGAC 59.022 33.333 3.54 0.00 0.00 3.36
2832 4415 8.070034 ACATCCATTTTTATGCATTTCTGAGA 57.930 30.769 3.54 0.00 0.00 3.27
2833 4416 9.976511 ATACATCCATTTTTATGCATTTCTGAG 57.023 29.630 3.54 0.00 0.00 3.35
2868 4451 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
2869 4452 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
2870 4453 7.122948 GGAGGAATGGATGTATCTAGACGTATT 59.877 40.741 0.00 0.00 0.00 1.89
2871 4454 6.603997 GGAGGAATGGATGTATCTAGACGTAT 59.396 42.308 0.00 0.00 0.00 3.06
2872 4455 5.944599 GGAGGAATGGATGTATCTAGACGTA 59.055 44.000 0.00 0.00 0.00 3.57
2873 4456 4.767928 GGAGGAATGGATGTATCTAGACGT 59.232 45.833 0.00 0.00 0.00 4.34
2874 4457 4.142578 CGGAGGAATGGATGTATCTAGACG 60.143 50.000 0.00 0.00 0.00 4.18
2875 4458 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
2876 4459 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
2877 4460 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
2878 4461 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
2879 4462 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
2880 4463 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
2881 4464 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
2882 4465 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
2883 4466 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
2884 4467 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
2885 4468 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
2886 4469 4.679639 CGAAATACTTGTCGGAGGAATGGA 60.680 45.833 0.00 0.00 33.62 3.41
2887 4470 3.555956 CGAAATACTTGTCGGAGGAATGG 59.444 47.826 0.00 0.00 33.62 3.16
2888 4471 4.778842 CGAAATACTTGTCGGAGGAATG 57.221 45.455 0.00 0.00 33.62 2.67
2896 4479 3.226346 TCAGTCCCGAAATACTTGTCG 57.774 47.619 0.00 0.00 37.01 4.35
2897 4480 3.871594 CCATCAGTCCCGAAATACTTGTC 59.128 47.826 0.00 0.00 0.00 3.18
2898 4481 3.517901 TCCATCAGTCCCGAAATACTTGT 59.482 43.478 0.00 0.00 0.00 3.16
2899 4482 4.122776 CTCCATCAGTCCCGAAATACTTG 58.877 47.826 0.00 0.00 0.00 3.16
2900 4483 3.775316 ACTCCATCAGTCCCGAAATACTT 59.225 43.478 0.00 0.00 0.00 2.24
2901 4484 3.375699 ACTCCATCAGTCCCGAAATACT 58.624 45.455 0.00 0.00 0.00 2.12
2902 4485 3.821421 ACTCCATCAGTCCCGAAATAC 57.179 47.619 0.00 0.00 0.00 1.89
2903 4486 4.899457 ACATACTCCATCAGTCCCGAAATA 59.101 41.667 0.00 0.00 36.43 1.40
2904 4487 3.711704 ACATACTCCATCAGTCCCGAAAT 59.288 43.478 0.00 0.00 36.43 2.17
2905 4488 3.104512 ACATACTCCATCAGTCCCGAAA 58.895 45.455 0.00 0.00 36.43 3.46
2906 4489 2.747177 ACATACTCCATCAGTCCCGAA 58.253 47.619 0.00 0.00 36.43 4.30
2907 4490 2.454336 ACATACTCCATCAGTCCCGA 57.546 50.000 0.00 0.00 36.43 5.14
2908 4491 4.873746 ATAACATACTCCATCAGTCCCG 57.126 45.455 0.00 0.00 36.43 5.14
2909 4492 6.174720 TGAATAACATACTCCATCAGTCCC 57.825 41.667 0.00 0.00 36.43 4.46
2910 4493 9.950496 ATAATGAATAACATACTCCATCAGTCC 57.050 33.333 0.00 0.00 38.38 3.85
2974 4559 2.493035 CCGCCTGTATGAACATGCATA 58.507 47.619 0.00 0.00 44.69 3.14
2999 4584 1.338136 ATGAAGTCACGGCTAGGGGG 61.338 60.000 0.00 0.00 0.00 5.40
3096 4681 8.986847 CATTCACAAAAACAAGGCAACAATATA 58.013 29.630 0.00 0.00 41.41 0.86
3114 4699 6.434965 ACATTTGATCAGATGGTCATTCACAA 59.565 34.615 25.26 0.73 0.00 3.33
3178 4763 4.286291 GTGACGGGGAGGGAGATAAATATT 59.714 45.833 0.00 0.00 0.00 1.28
3190 4775 0.837272 ATACAATGGTGACGGGGAGG 59.163 55.000 0.00 0.00 0.00 4.30
3241 4826 1.407437 GGCCTTGGACATCGATCTTGT 60.407 52.381 0.00 0.00 0.00 3.16
3295 4880 0.658536 GCGCTCTTCAACTGTTGTGC 60.659 55.000 19.12 16.57 0.00 4.57
3361 4949 9.933723 ATGTTTCTCTTGATTCTTTAATTTGGG 57.066 29.630 0.00 0.00 0.00 4.12
3405 4993 9.533831 AAAGGTGAACTTCTATTGATTAACCAT 57.466 29.630 0.00 0.00 38.85 3.55
3447 5036 6.606234 TGCGAAGTTTCAACTAACATTACA 57.394 33.333 0.00 0.00 38.57 2.41
3470 5059 6.388619 AGGAGGTAGTACATTTTGTCCAAT 57.611 37.500 2.06 0.00 0.00 3.16
3481 5070 2.610438 ACCGGAAAGGAGGTAGTACA 57.390 50.000 9.46 0.00 45.00 2.90
3507 5096 0.026674 CAACATGATACGTGCAGGCG 59.973 55.000 6.26 0.00 37.94 5.52
3656 5246 1.964223 AGGGATGCGTGTATCTACCTG 59.036 52.381 0.00 0.00 0.00 4.00
3673 5263 3.359695 TCTTTTCCGGGTTCATTAGGG 57.640 47.619 0.00 0.00 0.00 3.53
3737 5327 7.094549 GGTGGTATGCATTGAAAGTAAGTAACA 60.095 37.037 3.54 0.00 0.00 2.41
3738 5328 7.248437 GGTGGTATGCATTGAAAGTAAGTAAC 58.752 38.462 3.54 0.00 0.00 2.50
3739 5329 6.092944 CGGTGGTATGCATTGAAAGTAAGTAA 59.907 38.462 3.54 0.00 0.00 2.24
3740 5330 5.583061 CGGTGGTATGCATTGAAAGTAAGTA 59.417 40.000 3.54 0.00 0.00 2.24
3741 5331 4.394920 CGGTGGTATGCATTGAAAGTAAGT 59.605 41.667 3.54 0.00 0.00 2.24
3742 5332 4.201910 CCGGTGGTATGCATTGAAAGTAAG 60.202 45.833 3.54 0.00 0.00 2.34
3743 5333 3.692101 CCGGTGGTATGCATTGAAAGTAA 59.308 43.478 3.54 0.00 0.00 2.24
3744 5334 3.055021 TCCGGTGGTATGCATTGAAAGTA 60.055 43.478 3.54 0.00 0.00 2.24
3750 5340 3.738982 TCTTATCCGGTGGTATGCATTG 58.261 45.455 3.54 0.00 0.00 2.82
3759 5349 4.939052 AGACTGTAATCTTATCCGGTGG 57.061 45.455 0.00 0.00 0.00 4.61
3764 5354 8.519526 CAGGAGATGTAGACTGTAATCTTATCC 58.480 40.741 0.00 0.00 29.59 2.59
3768 5358 9.647918 TTATCAGGAGATGTAGACTGTAATCTT 57.352 33.333 0.00 0.00 35.67 2.40
3777 5367 5.769484 TCCGTTTATCAGGAGATGTAGAC 57.231 43.478 0.00 0.00 35.67 2.59
3779 5369 7.040340 ACACTATCCGTTTATCAGGAGATGTAG 60.040 40.741 0.00 0.00 40.26 2.74
3787 5377 4.099573 AGACCACACTATCCGTTTATCAGG 59.900 45.833 0.00 0.00 0.00 3.86
3790 5380 5.903810 AGAAGACCACACTATCCGTTTATC 58.096 41.667 0.00 0.00 0.00 1.75
3796 5386 4.713824 TGTAAGAAGACCACACTATCCG 57.286 45.455 0.00 0.00 0.00 4.18
3804 5394 6.879458 AGTAAATGACCATGTAAGAAGACCAC 59.121 38.462 0.00 0.00 0.00 4.16
3822 5412 7.693951 CGGAGAGCATGTCTTTAAAAGTAAATG 59.306 37.037 0.00 0.00 34.71 2.32
3828 5419 5.862924 TTCGGAGAGCATGTCTTTAAAAG 57.137 39.130 0.00 0.00 38.43 2.27
3848 5439 2.388232 ATCACGAACGCCGGCTTTC 61.388 57.895 30.25 30.25 43.93 2.62
3849 5440 2.358247 ATCACGAACGCCGGCTTT 60.358 55.556 26.68 23.05 43.93 3.51
3886 5478 1.470098 GCCTCATCTCACAATTTGCGT 59.530 47.619 0.00 0.00 0.00 5.24
3896 5488 3.330701 ACTTAGGGTTTTGCCTCATCTCA 59.669 43.478 0.00 0.00 37.43 3.27
3916 5508 3.243068 GGCAAAGACACATCGAAAACACT 60.243 43.478 0.00 0.00 0.00 3.55
3924 5516 1.131126 GACCATGGCAAAGACACATCG 59.869 52.381 13.04 0.00 0.00 3.84
3927 5519 0.107643 TCGACCATGGCAAAGACACA 59.892 50.000 13.04 0.00 0.00 3.72
3937 5529 5.812642 GGAGTATAATGCTTATCGACCATGG 59.187 44.000 11.19 11.19 0.00 3.66
3939 5531 5.721960 AGGGAGTATAATGCTTATCGACCAT 59.278 40.000 0.00 0.00 0.00 3.55
3940 5532 5.084519 AGGGAGTATAATGCTTATCGACCA 58.915 41.667 0.00 0.00 0.00 4.02
3941 5533 5.419471 AGAGGGAGTATAATGCTTATCGACC 59.581 44.000 0.00 0.00 0.00 4.79
3946 5539 7.072454 TGGAAACAGAGGGAGTATAATGCTTAT 59.928 37.037 0.00 0.00 35.01 1.73
3958 5551 7.569240 AGACTTATATTTGGAAACAGAGGGAG 58.431 38.462 0.00 0.00 44.54 4.30
3959 5552 7.510675 AGACTTATATTTGGAAACAGAGGGA 57.489 36.000 0.00 0.00 44.54 4.20
3960 5553 8.581253 AAAGACTTATATTTGGAAACAGAGGG 57.419 34.615 0.00 0.00 44.54 4.30
3961 5554 9.454859 AGAAAGACTTATATTTGGAAACAGAGG 57.545 33.333 0.00 0.00 44.54 3.69
3979 5572 9.784531 TCATTTGTTGAAATCTCTAGAAAGACT 57.215 29.630 0.00 0.00 28.65 3.24
3980 5573 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
3981 5574 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
3984 5577 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
3988 5581 8.873830 CGTATGTAGTCATTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 35.70 3.10
3989 5582 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
3990 5583 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
3991 5584 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
3992 5585 7.414098 GCTCCGTATGTAGTCATTTGTTGAAAT 60.414 37.037 0.00 0.00 35.70 2.17
3993 5586 6.128391 GCTCCGTATGTAGTCATTTGTTGAAA 60.128 38.462 0.00 0.00 35.70 2.69
3994 5587 5.350365 GCTCCGTATGTAGTCATTTGTTGAA 59.650 40.000 0.00 0.00 35.70 2.69
3995 5588 4.868171 GCTCCGTATGTAGTCATTTGTTGA 59.132 41.667 0.00 0.00 35.70 3.18
3996 5589 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
3997 5590 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
3998 5591 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
3999 5592 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
4000 5593 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
4001 5594 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
4002 5595 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
4003 5596 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4004 5597 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4005 5598 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4006 5599 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4007 5600 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
4008 5601 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
4009 5602 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
4010 5603 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
4011 5604 8.988934 GTATAGATTCATTCATTTTGCTCCGTA 58.011 33.333 0.00 0.00 0.00 4.02
4012 5605 6.949352 ATAGATTCATTCATTTTGCTCCGT 57.051 33.333 0.00 0.00 0.00 4.69
4013 5606 8.092521 AGTATAGATTCATTCATTTTGCTCCG 57.907 34.615 0.00 0.00 0.00 4.63
4041 5634 9.851686 ACATGTGGATGTATGTAGACATATTTT 57.148 29.630 0.00 0.00 41.27 1.82
4042 5635 9.851686 AACATGTGGATGTATGTAGACATATTT 57.148 29.630 0.00 0.00 42.30 1.40
4043 5636 9.276590 CAACATGTGGATGTATGTAGACATATT 57.723 33.333 0.00 0.00 42.30 1.28
4044 5637 8.432013 ACAACATGTGGATGTATGTAGACATAT 58.568 33.333 7.39 0.00 42.30 1.78
4045 5638 7.791029 ACAACATGTGGATGTATGTAGACATA 58.209 34.615 7.39 0.00 42.30 2.29
4046 5639 6.653020 ACAACATGTGGATGTATGTAGACAT 58.347 36.000 7.39 0.08 42.30 3.06
4047 5640 6.048732 ACAACATGTGGATGTATGTAGACA 57.951 37.500 7.39 0.00 42.30 3.41
4048 5641 6.371548 ACAACAACATGTGGATGTATGTAGAC 59.628 38.462 14.06 0.00 42.30 2.59
4049 5642 6.472016 ACAACAACATGTGGATGTATGTAGA 58.528 36.000 14.06 0.00 42.30 2.59
4050 5643 6.183360 GGACAACAACATGTGGATGTATGTAG 60.183 42.308 15.48 1.43 42.30 2.74
4051 5644 5.645929 GGACAACAACATGTGGATGTATGTA 59.354 40.000 15.48 0.00 42.30 2.29
4052 5645 4.458989 GGACAACAACATGTGGATGTATGT 59.541 41.667 15.48 13.73 42.30 2.29
4053 5646 4.458642 TGGACAACAACATGTGGATGTATG 59.541 41.667 15.48 11.23 42.30 2.39
4054 5647 4.661222 TGGACAACAACATGTGGATGTAT 58.339 39.130 15.48 1.45 42.30 2.29
4055 5648 4.092116 TGGACAACAACATGTGGATGTA 57.908 40.909 15.48 0.00 42.30 2.29
4056 5649 2.942804 TGGACAACAACATGTGGATGT 58.057 42.857 15.44 15.44 45.24 3.06
4057 5650 4.524316 AATGGACAACAACATGTGGATG 57.476 40.909 7.39 8.22 32.57 3.51
4058 5651 4.588106 TCAAATGGACAACAACATGTGGAT 59.412 37.500 7.39 0.00 33.96 3.41
4059 5652 3.956848 TCAAATGGACAACAACATGTGGA 59.043 39.130 7.39 0.00 33.96 4.02
4060 5653 4.319139 TCAAATGGACAACAACATGTGG 57.681 40.909 0.00 0.00 33.96 4.17
4061 5654 6.258287 ACATTTCAAATGGACAACAACATGTG 59.742 34.615 14.70 0.00 34.36 3.21
4062 5655 6.347696 ACATTTCAAATGGACAACAACATGT 58.652 32.000 14.70 0.00 35.90 3.21
4063 5656 6.702723 AGACATTTCAAATGGACAACAACATG 59.297 34.615 14.70 0.00 0.00 3.21
4064 5657 6.819284 AGACATTTCAAATGGACAACAACAT 58.181 32.000 14.70 0.00 0.00 2.71
4065 5658 6.219417 AGACATTTCAAATGGACAACAACA 57.781 33.333 14.70 0.00 0.00 3.33
4066 5659 8.641499 TTTAGACATTTCAAATGGACAACAAC 57.359 30.769 14.70 0.00 0.00 3.32
4067 5660 9.658799 TTTTTAGACATTTCAAATGGACAACAA 57.341 25.926 14.70 2.19 0.00 2.83
4068 5661 9.092876 GTTTTTAGACATTTCAAATGGACAACA 57.907 29.630 14.70 0.00 0.00 3.33
4069 5662 9.092876 TGTTTTTAGACATTTCAAATGGACAAC 57.907 29.630 14.70 8.42 0.00 3.32
4070 5663 9.092876 GTGTTTTTAGACATTTCAAATGGACAA 57.907 29.630 14.70 2.31 0.00 3.18
4071 5664 8.474025 AGTGTTTTTAGACATTTCAAATGGACA 58.526 29.630 14.70 4.90 0.00 4.02
4072 5665 8.871686 AGTGTTTTTAGACATTTCAAATGGAC 57.128 30.769 14.70 8.04 0.00 4.02
4089 5682 8.953313 CCTCCGTTCCTAAATATAAGTGTTTTT 58.047 33.333 0.00 0.00 0.00 1.94
4090 5683 7.555195 CCCTCCGTTCCTAAATATAAGTGTTTT 59.445 37.037 0.00 0.00 0.00 2.43
4091 5684 7.052248 CCCTCCGTTCCTAAATATAAGTGTTT 58.948 38.462 0.00 0.00 0.00 2.83
4092 5685 6.384886 TCCCTCCGTTCCTAAATATAAGTGTT 59.615 38.462 0.00 0.00 0.00 3.32
4093 5686 5.901276 TCCCTCCGTTCCTAAATATAAGTGT 59.099 40.000 0.00 0.00 0.00 3.55
4094 5687 6.041751 ACTCCCTCCGTTCCTAAATATAAGTG 59.958 42.308 0.00 0.00 0.00 3.16
4095 5688 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4096 5689 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4099 5692 9.643735 CTATATACTCCCTCCGTTCCTAAATAT 57.356 37.037 0.00 0.00 0.00 1.28
4100 5693 8.057623 CCTATATACTCCCTCCGTTCCTAAATA 58.942 40.741 0.00 0.00 0.00 1.40
4101 5694 6.896307 CCTATATACTCCCTCCGTTCCTAAAT 59.104 42.308 0.00 0.00 0.00 1.40
4102 5695 6.045931 TCCTATATACTCCCTCCGTTCCTAAA 59.954 42.308 0.00 0.00 0.00 1.85
4103 5696 5.553162 TCCTATATACTCCCTCCGTTCCTAA 59.447 44.000 0.00 0.00 0.00 2.69
4104 5697 5.103687 TCCTATATACTCCCTCCGTTCCTA 58.896 45.833 0.00 0.00 0.00 2.94
4105 5698 3.921486 TCCTATATACTCCCTCCGTTCCT 59.079 47.826 0.00 0.00 0.00 3.36
4106 5699 4.263860 ACTCCTATATACTCCCTCCGTTCC 60.264 50.000 0.00 0.00 0.00 3.62
4107 5700 4.920999 ACTCCTATATACTCCCTCCGTTC 58.079 47.826 0.00 0.00 0.00 3.95
4108 5701 5.280934 GGTACTCCTATATACTCCCTCCGTT 60.281 48.000 0.00 0.00 0.00 4.44
4109 5702 4.227073 GGTACTCCTATATACTCCCTCCGT 59.773 50.000 0.00 0.00 0.00 4.69
4110 5703 4.226846 TGGTACTCCTATATACTCCCTCCG 59.773 50.000 0.00 0.00 34.23 4.63
4111 5704 5.491800 TCTGGTACTCCTATATACTCCCTCC 59.508 48.000 0.00 0.00 34.23 4.30
4112 5705 6.444493 TCTCTGGTACTCCTATATACTCCCTC 59.556 46.154 0.00 0.00 34.23 4.30
4113 5706 6.216046 GTCTCTGGTACTCCTATATACTCCCT 59.784 46.154 0.00 0.00 34.23 4.20
4114 5707 6.417258 GTCTCTGGTACTCCTATATACTCCC 58.583 48.000 0.00 0.00 34.23 4.30
4115 5708 6.108015 CGTCTCTGGTACTCCTATATACTCC 58.892 48.000 0.00 0.00 34.23 3.85
4116 5709 6.108015 CCGTCTCTGGTACTCCTATATACTC 58.892 48.000 0.00 0.00 34.23 2.59
4117 5710 5.547276 ACCGTCTCTGGTACTCCTATATACT 59.453 44.000 0.00 0.00 41.55 2.12
4118 5711 5.803552 ACCGTCTCTGGTACTCCTATATAC 58.196 45.833 0.00 0.00 41.55 1.47
4119 5712 7.417229 CGATACCGTCTCTGGTACTCCTATATA 60.417 44.444 0.00 0.00 46.80 0.86
4120 5713 4.997545 ACCGTCTCTGGTACTCCTATAT 57.002 45.455 0.00 0.00 41.55 0.86
4145 5738 1.067693 TGTGATCGTGATTGCGACAC 58.932 50.000 0.00 0.00 43.99 3.67
4152 5745 4.093408 CCAAGTCGATTTGTGATCGTGATT 59.907 41.667 18.01 0.69 41.77 2.57
4162 5755 6.317893 ACAACTTAAGAACCAAGTCGATTTGT 59.682 34.615 18.01 1.93 35.19 2.83
4204 5797 6.572314 GCACTTGGCAGAATAGTTTATGGTTT 60.572 38.462 0.00 0.00 43.97 3.27
4251 5844 4.760047 AAGATCACGCGCGCCCTT 62.760 61.111 32.58 23.01 0.00 3.95
4254 5847 3.621394 GAGAAGATCACGCGCGCC 61.621 66.667 32.58 16.67 0.00 6.53
4255 5848 1.687494 AAAGAGAAGATCACGCGCGC 61.687 55.000 32.58 23.91 0.00 6.86
4257 5850 1.586123 GAGAAAGAGAAGATCACGCGC 59.414 52.381 5.73 0.00 0.00 6.86
4258 5851 3.105203 GAGAGAAAGAGAAGATCACGCG 58.895 50.000 3.53 3.53 0.00 6.01
4262 5855 7.233553 TGTGTTAAGGAGAGAAAGAGAAGATCA 59.766 37.037 0.00 0.00 0.00 2.92
4276 5871 4.588951 ACACTCAGTGATGTGTTAAGGAGA 59.411 41.667 13.14 0.00 43.88 3.71
4306 5901 9.225682 TGAGACCTCTTTATATAATGGGTTCTT 57.774 33.333 8.96 5.96 0.00 2.52
4312 5907 9.868277 GAGATGTGAGACCTCTTTATATAATGG 57.132 37.037 8.14 7.88 0.00 3.16
4315 5910 9.303116 GAGGAGATGTGAGACCTCTTTATATAA 57.697 37.037 0.00 0.00 43.64 0.98
4357 5952 5.505654 GCCCGTGTATAAAATGGAAGTGATG 60.506 44.000 0.00 0.00 0.00 3.07
4381 5977 3.908382 CGTTTGCTGAATTCTCGAAAAGG 59.092 43.478 7.05 6.96 0.00 3.11
4387 5983 3.060895 GGAGTACGTTTGCTGAATTCTCG 59.939 47.826 7.05 4.95 0.00 4.04
4388 5984 3.371285 GGGAGTACGTTTGCTGAATTCTC 59.629 47.826 7.05 0.00 0.00 2.87
4398 5994 4.069304 TCAAAATGGAGGGAGTACGTTTG 58.931 43.478 0.00 0.00 0.00 2.93
4401 5997 4.360951 TTTCAAAATGGAGGGAGTACGT 57.639 40.909 0.00 0.00 0.00 3.57
4402 5998 6.598064 ACTTATTTCAAAATGGAGGGAGTACG 59.402 38.462 0.00 0.00 0.00 3.67
4403 5999 7.393515 ACACTTATTTCAAAATGGAGGGAGTAC 59.606 37.037 8.84 0.00 0.00 2.73
4404 6000 7.466804 ACACTTATTTCAAAATGGAGGGAGTA 58.533 34.615 8.84 0.00 0.00 2.59
4405 6001 6.314917 ACACTTATTTCAAAATGGAGGGAGT 58.685 36.000 8.84 0.00 0.00 3.85
4406 6002 6.840780 ACACTTATTTCAAAATGGAGGGAG 57.159 37.500 8.84 0.00 0.00 4.30
4407 6003 6.834168 GACACTTATTTCAAAATGGAGGGA 57.166 37.500 8.84 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.