Multiple sequence alignment - TraesCS3B01G361300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G361300 chr3B 100.000 2339 0 0 1 2339 572786163 572788501 0.000000e+00 4320
1 TraesCS3B01G361300 chr5B 97.957 832 16 1 808 1639 393513675 393512845 0.000000e+00 1441
2 TraesCS3B01G361300 chr5B 88.793 116 9 2 2221 2332 115400307 115400192 3.130000e-29 139
3 TraesCS3B01G361300 chr6B 94.358 833 41 6 808 1638 411081156 411080328 0.000000e+00 1273
4 TraesCS3B01G361300 chr6B 89.379 838 79 8 808 1638 300906 300072 0.000000e+00 1046
5 TraesCS3B01G361300 chr7B 97.908 717 14 1 808 1524 630567198 630567913 0.000000e+00 1240
6 TraesCS3B01G361300 chr4B 93.046 834 54 4 808 1640 670053855 670053025 0.000000e+00 1216
7 TraesCS3B01G361300 chr4A 92.077 833 62 4 808 1639 732267161 732267990 0.000000e+00 1170
8 TraesCS3B01G361300 chr4A 87.933 837 93 7 808 1639 2974065 2974898 0.000000e+00 979
9 TraesCS3B01G361300 chr4A 87.679 836 95 7 808 1638 448545760 448546592 0.000000e+00 966
10 TraesCS3B01G361300 chr1B 90.431 836 71 9 808 1640 159405091 159405920 0.000000e+00 1092
11 TraesCS3B01G361300 chr3A 90.553 561 50 3 245 803 575610289 575610848 0.000000e+00 739
12 TraesCS3B01G361300 chr3A 88.550 524 50 4 1639 2152 575610838 575611361 5.490000e-176 627
13 TraesCS3B01G361300 chr3A 86.702 188 19 4 2158 2339 575611334 575611521 1.100000e-48 204
14 TraesCS3B01G361300 chr3A 88.696 115 12 1 2217 2330 215487803 215487689 3.130000e-29 139
15 TraesCS3B01G361300 chr3D 88.359 524 41 4 1639 2152 437667354 437667867 1.540000e-171 612
16 TraesCS3B01G361300 chr3D 90.758 422 34 5 211 628 437666822 437667242 2.030000e-155 558
17 TraesCS3B01G361300 chr3D 93.750 224 8 1 1 218 335327460 335327683 4.820000e-87 331
18 TraesCS3B01G361300 chr3D 90.860 186 12 3 2159 2339 437667841 437668026 6.460000e-61 244
19 TraesCS3B01G361300 chr3D 95.935 123 5 0 681 803 437667242 437667364 1.420000e-47 200
20 TraesCS3B01G361300 chr3D 88.596 114 9 4 2221 2330 175432330 175432217 4.050000e-28 135
21 TraesCS3B01G361300 chr7D 94.144 222 7 1 1 216 390707186 390706965 1.340000e-87 333
22 TraesCS3B01G361300 chr7D 93.694 222 8 1 1 216 478264785 478265006 6.230000e-86 327
23 TraesCS3B01G361300 chr7D 93.694 222 8 1 1 216 556770137 556769916 6.230000e-86 327
24 TraesCS3B01G361300 chr4D 93.750 224 8 1 1 218 466118167 466118390 4.820000e-87 331
25 TraesCS3B01G361300 chrUn 93.694 222 8 1 1 216 18848538 18848759 6.230000e-86 327
26 TraesCS3B01G361300 chr6D 93.694 222 8 1 1 216 93585574 93585795 6.230000e-86 327
27 TraesCS3B01G361300 chr2D 92.952 227 10 1 1 221 509614836 509614610 2.240000e-85 326
28 TraesCS3B01G361300 chr1D 92.641 231 10 2 1 225 474953379 474953608 2.240000e-85 326
29 TraesCS3B01G361300 chr5A 90.265 113 7 2 2219 2327 480823849 480823737 6.740000e-31 145
30 TraesCS3B01G361300 chr5A 88.793 116 9 2 2221 2332 556822092 556822207 3.130000e-29 139
31 TraesCS3B01G361300 chr5A 88.793 116 9 2 2221 2332 572040871 572040986 3.130000e-29 139
32 TraesCS3B01G361300 chr1A 88.333 120 10 2 2217 2332 96356800 96356681 8.710000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G361300 chr3B 572786163 572788501 2338 False 4320.000000 4320 100.000000 1 2339 1 chr3B.!!$F1 2338
1 TraesCS3B01G361300 chr5B 393512845 393513675 830 True 1441.000000 1441 97.957000 808 1639 1 chr5B.!!$R2 831
2 TraesCS3B01G361300 chr6B 411080328 411081156 828 True 1273.000000 1273 94.358000 808 1638 1 chr6B.!!$R2 830
3 TraesCS3B01G361300 chr6B 300072 300906 834 True 1046.000000 1046 89.379000 808 1638 1 chr6B.!!$R1 830
4 TraesCS3B01G361300 chr7B 630567198 630567913 715 False 1240.000000 1240 97.908000 808 1524 1 chr7B.!!$F1 716
5 TraesCS3B01G361300 chr4B 670053025 670053855 830 True 1216.000000 1216 93.046000 808 1640 1 chr4B.!!$R1 832
6 TraesCS3B01G361300 chr4A 732267161 732267990 829 False 1170.000000 1170 92.077000 808 1639 1 chr4A.!!$F3 831
7 TraesCS3B01G361300 chr4A 2974065 2974898 833 False 979.000000 979 87.933000 808 1639 1 chr4A.!!$F1 831
8 TraesCS3B01G361300 chr4A 448545760 448546592 832 False 966.000000 966 87.679000 808 1638 1 chr4A.!!$F2 830
9 TraesCS3B01G361300 chr1B 159405091 159405920 829 False 1092.000000 1092 90.431000 808 1640 1 chr1B.!!$F1 832
10 TraesCS3B01G361300 chr3A 575610289 575611521 1232 False 523.333333 739 88.601667 245 2339 3 chr3A.!!$F1 2094
11 TraesCS3B01G361300 chr3D 437666822 437668026 1204 False 403.500000 612 91.478000 211 2339 4 chr3D.!!$F2 2128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.105964 TTACCGTTGCTGCTGTCACT 59.894 50.0 0.0 0.0 0.0 3.41 F
144 145 0.110486 TCTTTGGCTCCCCTTGTGTC 59.890 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1228 0.040425 AACACAATCTCAAACGGCGC 60.040 50.0 6.90 0.0 0.00 6.53 R
2142 2222 0.041312 CGAACACTCGGCCAAACAAG 60.041 55.0 2.24 0.0 41.57 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.762535 ACTATTACCGTTGCTGCTGT 57.237 45.000 0.00 0.00 0.00 4.40
22 23 2.618053 ACTATTACCGTTGCTGCTGTC 58.382 47.619 0.00 0.00 0.00 3.51
23 24 2.028476 ACTATTACCGTTGCTGCTGTCA 60.028 45.455 0.00 0.00 0.00 3.58
24 25 1.156736 ATTACCGTTGCTGCTGTCAC 58.843 50.000 0.00 0.00 0.00 3.67
25 26 0.105964 TTACCGTTGCTGCTGTCACT 59.894 50.000 0.00 0.00 0.00 3.41
26 27 0.963225 TACCGTTGCTGCTGTCACTA 59.037 50.000 0.00 0.00 0.00 2.74
27 28 0.600255 ACCGTTGCTGCTGTCACTAC 60.600 55.000 0.00 0.00 0.00 2.73
28 29 0.319900 CCGTTGCTGCTGTCACTACT 60.320 55.000 0.00 0.00 0.00 2.57
29 30 1.067846 CCGTTGCTGCTGTCACTACTA 60.068 52.381 0.00 0.00 0.00 1.82
30 31 2.417379 CCGTTGCTGCTGTCACTACTAT 60.417 50.000 0.00 0.00 0.00 2.12
31 32 2.854777 CGTTGCTGCTGTCACTACTATC 59.145 50.000 0.00 0.00 0.00 2.08
32 33 3.673323 CGTTGCTGCTGTCACTACTATCA 60.673 47.826 0.00 0.00 0.00 2.15
33 34 4.245660 GTTGCTGCTGTCACTACTATCAA 58.754 43.478 0.00 0.00 0.00 2.57
34 35 4.535526 TGCTGCTGTCACTACTATCAAA 57.464 40.909 0.00 0.00 0.00 2.69
35 36 4.893608 TGCTGCTGTCACTACTATCAAAA 58.106 39.130 0.00 0.00 0.00 2.44
36 37 4.931601 TGCTGCTGTCACTACTATCAAAAG 59.068 41.667 0.00 0.00 0.00 2.27
37 38 4.932200 GCTGCTGTCACTACTATCAAAAGT 59.068 41.667 0.00 0.00 0.00 2.66
38 39 6.100004 GCTGCTGTCACTACTATCAAAAGTA 58.900 40.000 0.00 0.00 0.00 2.24
39 40 6.758886 GCTGCTGTCACTACTATCAAAAGTAT 59.241 38.462 0.00 0.00 31.70 2.12
40 41 7.043059 GCTGCTGTCACTACTATCAAAAGTATC 60.043 40.741 0.00 0.00 31.70 2.24
41 42 7.836842 TGCTGTCACTACTATCAAAAGTATCA 58.163 34.615 0.00 0.00 31.70 2.15
42 43 8.311109 TGCTGTCACTACTATCAAAAGTATCAA 58.689 33.333 0.00 0.00 31.70 2.57
43 44 9.151471 GCTGTCACTACTATCAAAAGTATCAAA 57.849 33.333 0.00 0.00 31.70 2.69
56 57 9.555727 TCAAAAGTATCAAACTACTTTGCTACT 57.444 29.630 9.32 5.88 46.25 2.57
57 58 9.599322 CAAAAGTATCAAACTACTTTGCTACTG 57.401 33.333 9.32 2.03 46.25 2.74
58 59 9.555727 AAAAGTATCAAACTACTTTGCTACTGA 57.444 29.630 9.32 0.00 46.25 3.41
59 60 9.726438 AAAGTATCAAACTACTTTGCTACTGAT 57.274 29.630 10.28 0.00 43.64 2.90
60 61 8.934507 AGTATCAAACTACTTTGCTACTGATC 57.065 34.615 9.27 0.00 43.17 2.92
61 62 8.531982 AGTATCAAACTACTTTGCTACTGATCA 58.468 33.333 9.27 0.00 43.17 2.92
62 63 9.319143 GTATCAAACTACTTTGCTACTGATCAT 57.681 33.333 0.00 0.00 36.60 2.45
63 64 8.798859 ATCAAACTACTTTGCTACTGATCATT 57.201 30.769 0.00 0.00 37.31 2.57
64 65 8.621532 TCAAACTACTTTGCTACTGATCATTT 57.378 30.769 0.00 0.00 37.31 2.32
65 66 9.066892 TCAAACTACTTTGCTACTGATCATTTT 57.933 29.630 0.00 0.00 37.31 1.82
66 67 9.121517 CAAACTACTTTGCTACTGATCATTTTG 57.878 33.333 0.00 0.00 30.64 2.44
67 68 7.986085 ACTACTTTGCTACTGATCATTTTGT 57.014 32.000 0.00 0.00 0.00 2.83
68 69 8.396272 ACTACTTTGCTACTGATCATTTTGTT 57.604 30.769 0.00 0.00 0.00 2.83
69 70 8.292448 ACTACTTTGCTACTGATCATTTTGTTG 58.708 33.333 0.00 0.00 0.00 3.33
70 71 5.922544 ACTTTGCTACTGATCATTTTGTTGC 59.077 36.000 10.77 10.77 0.00 4.17
71 72 5.450592 TTGCTACTGATCATTTTGTTGCA 57.549 34.783 14.68 14.68 38.78 4.08
72 73 5.050644 TGCTACTGATCATTTTGTTGCAG 57.949 39.130 14.68 0.00 36.58 4.41
73 74 4.761227 TGCTACTGATCATTTTGTTGCAGA 59.239 37.500 14.68 0.00 36.58 4.26
74 75 5.416639 TGCTACTGATCATTTTGTTGCAGAT 59.583 36.000 14.68 0.00 36.58 2.90
75 76 6.598850 TGCTACTGATCATTTTGTTGCAGATA 59.401 34.615 14.68 0.00 36.58 1.98
76 77 7.121020 TGCTACTGATCATTTTGTTGCAGATAA 59.879 33.333 14.68 0.00 36.58 1.75
77 78 8.133627 GCTACTGATCATTTTGTTGCAGATAAT 58.866 33.333 12.19 0.00 32.99 1.28
86 87 9.806203 CATTTTGTTGCAGATAATTAATCTCCA 57.194 29.630 0.00 0.00 43.42 3.86
88 89 7.572523 TTGTTGCAGATAATTAATCTCCAGG 57.427 36.000 0.00 0.00 43.42 4.45
89 90 6.662755 TGTTGCAGATAATTAATCTCCAGGT 58.337 36.000 0.00 0.00 43.42 4.00
90 91 6.543465 TGTTGCAGATAATTAATCTCCAGGTG 59.457 38.462 0.00 0.00 43.42 4.00
91 92 6.499106 TGCAGATAATTAATCTCCAGGTGA 57.501 37.500 0.00 0.00 43.42 4.02
92 93 6.899089 TGCAGATAATTAATCTCCAGGTGAA 58.101 36.000 0.00 0.00 43.42 3.18
93 94 7.520798 TGCAGATAATTAATCTCCAGGTGAAT 58.479 34.615 0.00 0.00 43.42 2.57
94 95 8.000709 TGCAGATAATTAATCTCCAGGTGAATT 58.999 33.333 0.00 0.00 43.42 2.17
95 96 8.295288 GCAGATAATTAATCTCCAGGTGAATTG 58.705 37.037 0.00 0.00 43.42 2.32
96 97 9.565090 CAGATAATTAATCTCCAGGTGAATTGA 57.435 33.333 0.00 0.00 43.42 2.57
97 98 9.566432 AGATAATTAATCTCCAGGTGAATTGAC 57.434 33.333 0.00 0.00 41.32 3.18
98 99 9.342308 GATAATTAATCTCCAGGTGAATTGACA 57.658 33.333 0.00 0.00 0.00 3.58
99 100 9.699410 ATAATTAATCTCCAGGTGAATTGACAA 57.301 29.630 0.00 0.00 0.00 3.18
100 101 6.817765 TTAATCTCCAGGTGAATTGACAAC 57.182 37.500 0.00 0.00 0.00 3.32
101 102 4.647564 ATCTCCAGGTGAATTGACAACT 57.352 40.909 0.00 0.00 38.44 3.16
102 103 4.008074 TCTCCAGGTGAATTGACAACTC 57.992 45.455 0.00 0.00 35.48 3.01
103 104 3.390967 TCTCCAGGTGAATTGACAACTCA 59.609 43.478 0.00 0.00 35.48 3.41
104 105 3.743521 TCCAGGTGAATTGACAACTCAG 58.256 45.455 0.00 0.00 35.48 3.35
105 106 2.227388 CCAGGTGAATTGACAACTCAGC 59.773 50.000 18.43 18.43 35.48 4.26
106 107 2.227388 CAGGTGAATTGACAACTCAGCC 59.773 50.000 21.41 14.78 38.13 4.85
107 108 1.197721 GGTGAATTGACAACTCAGCCG 59.802 52.381 15.96 0.00 32.67 5.52
108 109 0.874390 TGAATTGACAACTCAGCCGC 59.126 50.000 0.00 0.00 0.00 6.53
109 110 1.160137 GAATTGACAACTCAGCCGCT 58.840 50.000 0.00 0.00 0.00 5.52
110 111 2.289382 TGAATTGACAACTCAGCCGCTA 60.289 45.455 0.00 0.00 0.00 4.26
111 112 2.472695 ATTGACAACTCAGCCGCTAA 57.527 45.000 0.00 0.00 0.00 3.09
112 113 2.472695 TTGACAACTCAGCCGCTAAT 57.527 45.000 0.00 0.00 0.00 1.73
113 114 3.603158 TTGACAACTCAGCCGCTAATA 57.397 42.857 0.00 0.00 0.00 0.98
114 115 2.888594 TGACAACTCAGCCGCTAATAC 58.111 47.619 0.00 0.00 0.00 1.89
115 116 2.202566 GACAACTCAGCCGCTAATACC 58.797 52.381 0.00 0.00 0.00 2.73
116 117 1.831736 ACAACTCAGCCGCTAATACCT 59.168 47.619 0.00 0.00 0.00 3.08
117 118 2.236395 ACAACTCAGCCGCTAATACCTT 59.764 45.455 0.00 0.00 0.00 3.50
118 119 2.866762 CAACTCAGCCGCTAATACCTTC 59.133 50.000 0.00 0.00 0.00 3.46
119 120 2.108168 ACTCAGCCGCTAATACCTTCA 58.892 47.619 0.00 0.00 0.00 3.02
120 121 2.500098 ACTCAGCCGCTAATACCTTCAA 59.500 45.455 0.00 0.00 0.00 2.69
121 122 3.055385 ACTCAGCCGCTAATACCTTCAAA 60.055 43.478 0.00 0.00 0.00 2.69
122 123 4.130118 CTCAGCCGCTAATACCTTCAAAT 58.870 43.478 0.00 0.00 0.00 2.32
123 124 5.163343 ACTCAGCCGCTAATACCTTCAAATA 60.163 40.000 0.00 0.00 0.00 1.40
124 125 5.865085 TCAGCCGCTAATACCTTCAAATAT 58.135 37.500 0.00 0.00 0.00 1.28
125 126 6.296026 TCAGCCGCTAATACCTTCAAATATT 58.704 36.000 0.00 0.00 0.00 1.28
126 127 6.426937 TCAGCCGCTAATACCTTCAAATATTC 59.573 38.462 0.00 0.00 0.00 1.75
127 128 6.428159 CAGCCGCTAATACCTTCAAATATTCT 59.572 38.462 0.00 0.00 0.00 2.40
128 129 6.998673 AGCCGCTAATACCTTCAAATATTCTT 59.001 34.615 0.00 0.00 0.00 2.52
129 130 7.502561 AGCCGCTAATACCTTCAAATATTCTTT 59.497 33.333 0.00 0.00 0.00 2.52
130 131 7.591426 GCCGCTAATACCTTCAAATATTCTTTG 59.409 37.037 0.00 0.00 0.00 2.77
131 132 8.076178 CCGCTAATACCTTCAAATATTCTTTGG 58.924 37.037 0.00 0.00 0.00 3.28
132 133 7.591426 CGCTAATACCTTCAAATATTCTTTGGC 59.409 37.037 0.00 0.00 0.00 4.52
133 134 8.633561 GCTAATACCTTCAAATATTCTTTGGCT 58.366 33.333 0.00 0.00 0.00 4.75
135 136 5.921962 ACCTTCAAATATTCTTTGGCTCC 57.078 39.130 0.00 0.00 0.00 4.70
136 137 4.711846 ACCTTCAAATATTCTTTGGCTCCC 59.288 41.667 0.00 0.00 0.00 4.30
137 138 4.100035 CCTTCAAATATTCTTTGGCTCCCC 59.900 45.833 0.00 0.00 0.00 4.81
138 139 4.608170 TCAAATATTCTTTGGCTCCCCT 57.392 40.909 0.00 0.00 0.00 4.79
139 140 4.946646 TCAAATATTCTTTGGCTCCCCTT 58.053 39.130 0.00 0.00 0.00 3.95
140 141 4.711355 TCAAATATTCTTTGGCTCCCCTTG 59.289 41.667 0.00 0.00 0.00 3.61
141 142 4.337264 AATATTCTTTGGCTCCCCTTGT 57.663 40.909 0.00 0.00 0.00 3.16
142 143 1.928868 ATTCTTTGGCTCCCCTTGTG 58.071 50.000 0.00 0.00 0.00 3.33
143 144 0.555769 TTCTTTGGCTCCCCTTGTGT 59.444 50.000 0.00 0.00 0.00 3.72
144 145 0.110486 TCTTTGGCTCCCCTTGTGTC 59.890 55.000 0.00 0.00 0.00 3.67
145 146 1.228124 TTTGGCTCCCCTTGTGTCG 60.228 57.895 0.00 0.00 0.00 4.35
146 147 1.701031 TTTGGCTCCCCTTGTGTCGA 61.701 55.000 0.00 0.00 0.00 4.20
147 148 1.701031 TTGGCTCCCCTTGTGTCGAA 61.701 55.000 0.00 0.00 0.00 3.71
148 149 1.299976 GGCTCCCCTTGTGTCGAAT 59.700 57.895 0.00 0.00 0.00 3.34
149 150 0.322546 GGCTCCCCTTGTGTCGAATT 60.323 55.000 0.00 0.00 0.00 2.17
150 151 1.534729 GCTCCCCTTGTGTCGAATTT 58.465 50.000 0.00 0.00 0.00 1.82
151 152 2.617021 GGCTCCCCTTGTGTCGAATTTA 60.617 50.000 0.00 0.00 0.00 1.40
152 153 3.279434 GCTCCCCTTGTGTCGAATTTAT 58.721 45.455 0.00 0.00 0.00 1.40
153 154 4.448210 GCTCCCCTTGTGTCGAATTTATA 58.552 43.478 0.00 0.00 0.00 0.98
154 155 4.879545 GCTCCCCTTGTGTCGAATTTATAA 59.120 41.667 0.00 0.00 0.00 0.98
155 156 5.355910 GCTCCCCTTGTGTCGAATTTATAAA 59.644 40.000 0.00 0.00 0.00 1.40
156 157 6.039382 GCTCCCCTTGTGTCGAATTTATAAAT 59.961 38.462 4.81 4.81 0.00 1.40
157 158 7.416326 GCTCCCCTTGTGTCGAATTTATAAATT 60.416 37.037 20.77 20.77 41.06 1.82
158 159 8.356000 TCCCCTTGTGTCGAATTTATAAATTT 57.644 30.769 21.39 8.30 38.64 1.82
159 160 8.247562 TCCCCTTGTGTCGAATTTATAAATTTG 58.752 33.333 23.95 23.95 38.64 2.32
160 161 7.491048 CCCCTTGTGTCGAATTTATAAATTTGG 59.509 37.037 27.08 19.98 39.29 3.28
161 162 7.491048 CCCTTGTGTCGAATTTATAAATTTGGG 59.509 37.037 27.08 20.89 39.29 4.12
162 163 8.032451 CCTTGTGTCGAATTTATAAATTTGGGT 58.968 33.333 27.08 8.27 39.29 4.51
163 164 9.418045 CTTGTGTCGAATTTATAAATTTGGGTT 57.582 29.630 27.08 8.31 39.29 4.11
164 165 8.749841 TGTGTCGAATTTATAAATTTGGGTTG 57.250 30.769 27.08 11.21 39.29 3.77
165 166 8.577296 TGTGTCGAATTTATAAATTTGGGTTGA 58.423 29.630 27.08 12.89 39.29 3.18
166 167 9.413048 GTGTCGAATTTATAAATTTGGGTTGAA 57.587 29.630 27.08 12.14 39.29 2.69
181 182 4.996788 GGTTGAATACTCTACCCTCGAA 57.003 45.455 0.00 0.00 40.45 3.71
182 183 5.334724 GGTTGAATACTCTACCCTCGAAA 57.665 43.478 0.00 0.00 40.45 3.46
183 184 5.727434 GGTTGAATACTCTACCCTCGAAAA 58.273 41.667 0.00 0.00 40.45 2.29
184 185 5.579904 GGTTGAATACTCTACCCTCGAAAAC 59.420 44.000 0.00 0.00 40.45 2.43
185 186 6.396450 GTTGAATACTCTACCCTCGAAAACT 58.604 40.000 0.00 0.00 0.00 2.66
186 187 5.962433 TGAATACTCTACCCTCGAAAACTG 58.038 41.667 0.00 0.00 0.00 3.16
187 188 5.479375 TGAATACTCTACCCTCGAAAACTGT 59.521 40.000 0.00 0.00 0.00 3.55
188 189 5.997384 ATACTCTACCCTCGAAAACTGTT 57.003 39.130 0.00 0.00 0.00 3.16
189 190 7.177216 TGAATACTCTACCCTCGAAAACTGTTA 59.823 37.037 0.00 0.00 0.00 2.41
190 191 5.997384 ACTCTACCCTCGAAAACTGTTAT 57.003 39.130 0.00 0.00 0.00 1.89
191 192 5.721232 ACTCTACCCTCGAAAACTGTTATG 58.279 41.667 0.00 0.00 0.00 1.90
192 193 5.479375 ACTCTACCCTCGAAAACTGTTATGA 59.521 40.000 0.00 0.00 0.00 2.15
193 194 6.154706 ACTCTACCCTCGAAAACTGTTATGAT 59.845 38.462 0.00 0.00 0.00 2.45
194 195 6.570692 TCTACCCTCGAAAACTGTTATGATC 58.429 40.000 0.00 0.00 0.00 2.92
195 196 4.514401 ACCCTCGAAAACTGTTATGATCC 58.486 43.478 0.00 0.00 0.00 3.36
196 197 3.877508 CCCTCGAAAACTGTTATGATCCC 59.122 47.826 0.00 0.00 0.00 3.85
197 198 3.877508 CCTCGAAAACTGTTATGATCCCC 59.122 47.826 0.00 0.00 0.00 4.81
198 199 4.384208 CCTCGAAAACTGTTATGATCCCCT 60.384 45.833 0.00 0.00 0.00 4.79
199 200 5.163343 CCTCGAAAACTGTTATGATCCCCTA 60.163 44.000 0.00 0.00 0.00 3.53
200 201 6.464465 CCTCGAAAACTGTTATGATCCCCTAT 60.464 42.308 0.00 0.00 0.00 2.57
201 202 7.256190 CCTCGAAAACTGTTATGATCCCCTATA 60.256 40.741 0.00 0.00 0.00 1.31
202 203 7.439381 TCGAAAACTGTTATGATCCCCTATAC 58.561 38.462 0.00 0.00 0.00 1.47
203 204 7.289317 TCGAAAACTGTTATGATCCCCTATACT 59.711 37.037 0.00 0.00 0.00 2.12
204 205 7.931948 CGAAAACTGTTATGATCCCCTATACTT 59.068 37.037 0.00 0.00 0.00 2.24
205 206 8.980481 AAAACTGTTATGATCCCCTATACTTG 57.020 34.615 0.00 0.00 0.00 3.16
206 207 7.691993 AACTGTTATGATCCCCTATACTTGT 57.308 36.000 0.00 0.00 0.00 3.16
207 208 7.067496 ACTGTTATGATCCCCTATACTTGTG 57.933 40.000 0.00 0.00 0.00 3.33
208 209 6.043243 ACTGTTATGATCCCCTATACTTGTGG 59.957 42.308 0.00 0.00 0.00 4.17
209 210 5.309543 TGTTATGATCCCCTATACTTGTGGG 59.690 44.000 0.00 0.00 40.59 4.61
210 211 3.431411 TGATCCCCTATACTTGTGGGT 57.569 47.619 0.00 0.00 39.31 4.51
211 212 3.743132 TGATCCCCTATACTTGTGGGTT 58.257 45.455 0.00 0.00 39.31 4.11
212 213 4.898268 TGATCCCCTATACTTGTGGGTTA 58.102 43.478 0.00 0.00 39.31 2.85
213 214 5.482580 TGATCCCCTATACTTGTGGGTTAT 58.517 41.667 0.00 0.00 39.31 1.89
214 215 5.546499 TGATCCCCTATACTTGTGGGTTATC 59.454 44.000 0.00 0.00 39.31 1.75
215 216 4.898268 TCCCCTATACTTGTGGGTTATCA 58.102 43.478 0.00 0.00 39.31 2.15
219 220 5.130477 CCCTATACTTGTGGGTTATCAGTGT 59.870 44.000 0.00 0.00 36.32 3.55
254 255 1.996898 GTCACATGTGCATGGCAATTG 59.003 47.619 21.38 0.00 41.47 2.32
255 256 1.619332 TCACATGTGCATGGCAATTGT 59.381 42.857 21.38 0.00 41.47 2.71
258 259 2.809119 ACATGTGCATGGCAATTGTTTG 59.191 40.909 15.52 3.92 41.47 2.93
314 316 7.485810 CATTGCAATTCTTATCCTCATTCACA 58.514 34.615 9.83 0.00 0.00 3.58
322 324 6.131264 TCTTATCCTCATTCACATGGCAAAT 58.869 36.000 0.00 0.00 0.00 2.32
323 325 6.608405 TCTTATCCTCATTCACATGGCAAATT 59.392 34.615 0.00 0.00 0.00 1.82
324 326 5.687166 ATCCTCATTCACATGGCAAATTT 57.313 34.783 0.00 0.00 0.00 1.82
345 347 0.688487 TTCGACAGGGGAACGGATTT 59.312 50.000 0.00 0.00 0.00 2.17
365 367 5.616488 TTTCCGACCAAATGTAAAGCTAC 57.384 39.130 0.00 0.00 0.00 3.58
366 368 3.602483 TCCGACCAAATGTAAAGCTACC 58.398 45.455 0.00 0.00 0.00 3.18
398 400 6.590292 CGCTAAAGATGTGAAGAAAGTCCTAA 59.410 38.462 0.00 0.00 0.00 2.69
420 422 2.040178 CCTCCTTAGGTTAGGCACGAT 58.960 52.381 0.00 0.00 38.19 3.73
421 423 2.434702 CCTCCTTAGGTTAGGCACGATT 59.565 50.000 0.00 0.00 38.19 3.34
459 462 0.543749 AGGCAACATCCTCCTAGCAC 59.456 55.000 0.00 0.00 41.41 4.40
465 468 2.945456 ACATCCTCCTAGCACGATGTA 58.055 47.619 12.50 0.00 42.61 2.29
486 489 1.358759 GTGTGGCGACCAACCTTTG 59.641 57.895 0.00 0.00 34.18 2.77
503 506 0.470766 TTGTGTGAGGCGTACCCTTT 59.529 50.000 4.61 0.00 46.60 3.11
513 516 6.372381 GTGAGGCGTACCCTTTCTTATTTAAA 59.628 38.462 4.61 0.00 46.60 1.52
514 517 6.372381 TGAGGCGTACCCTTTCTTATTTAAAC 59.628 38.462 4.61 0.00 46.60 2.01
516 519 5.122239 GGCGTACCCTTTCTTATTTAAACGT 59.878 40.000 0.00 0.00 0.00 3.99
525 528 7.307573 CCTTTCTTATTTAAACGTCAAGGTCGT 60.308 37.037 0.00 0.00 43.45 4.34
584 587 3.766691 GGTCGCTCGGGGCAACTA 61.767 66.667 0.00 0.00 41.91 2.24
628 684 0.608308 GGGTCAAGCTAAAAGGGCGT 60.608 55.000 0.00 0.00 34.52 5.68
629 685 0.803117 GGTCAAGCTAAAAGGGCGTC 59.197 55.000 0.00 0.00 34.52 5.19
630 686 0.803117 GTCAAGCTAAAAGGGCGTCC 59.197 55.000 0.00 0.00 34.52 4.79
631 687 0.398696 TCAAGCTAAAAGGGCGTCCA 59.601 50.000 9.71 0.00 34.83 4.02
632 688 1.202830 TCAAGCTAAAAGGGCGTCCAA 60.203 47.619 9.71 0.00 34.83 3.53
633 689 1.818674 CAAGCTAAAAGGGCGTCCAAT 59.181 47.619 9.71 0.00 34.83 3.16
634 690 2.215942 AGCTAAAAGGGCGTCCAATT 57.784 45.000 9.71 5.02 34.83 2.32
635 691 3.359695 AGCTAAAAGGGCGTCCAATTA 57.640 42.857 9.71 6.08 34.83 1.40
636 692 3.898482 AGCTAAAAGGGCGTCCAATTAT 58.102 40.909 9.71 0.00 34.83 1.28
637 693 4.278310 AGCTAAAAGGGCGTCCAATTATT 58.722 39.130 9.71 0.00 34.83 1.40
638 694 4.338400 AGCTAAAAGGGCGTCCAATTATTC 59.662 41.667 9.71 2.41 34.83 1.75
639 695 4.097286 GCTAAAAGGGCGTCCAATTATTCA 59.903 41.667 9.71 0.00 34.83 2.57
640 696 5.221244 GCTAAAAGGGCGTCCAATTATTCAT 60.221 40.000 9.71 0.00 34.83 2.57
641 697 4.654091 AAAGGGCGTCCAATTATTCATG 57.346 40.909 9.71 0.00 34.83 3.07
642 698 2.586425 AGGGCGTCCAATTATTCATGG 58.414 47.619 9.71 0.00 38.09 3.66
643 699 2.174639 AGGGCGTCCAATTATTCATGGA 59.825 45.455 9.71 0.00 43.32 3.41
650 706 3.868661 TCCAATTATTCATGGACGTGACG 59.131 43.478 2.24 2.24 40.74 4.35
651 707 3.868661 CCAATTATTCATGGACGTGACGA 59.131 43.478 13.70 0.00 39.12 4.20
652 708 4.025730 CCAATTATTCATGGACGTGACGAG 60.026 45.833 13.70 0.00 39.12 4.18
653 709 2.863401 TATTCATGGACGTGACGAGG 57.137 50.000 13.70 0.00 0.00 4.63
654 710 0.895530 ATTCATGGACGTGACGAGGT 59.104 50.000 13.70 0.00 0.00 3.85
655 711 0.242825 TTCATGGACGTGACGAGGTC 59.757 55.000 13.70 0.00 36.44 3.85
656 712 0.608308 TCATGGACGTGACGAGGTCT 60.608 55.000 13.70 0.00 37.20 3.85
657 713 0.179161 CATGGACGTGACGAGGTCTC 60.179 60.000 13.70 0.00 37.20 3.36
658 714 0.322636 ATGGACGTGACGAGGTCTCT 60.323 55.000 13.70 0.00 37.20 3.10
659 715 0.536687 TGGACGTGACGAGGTCTCTT 60.537 55.000 13.70 0.00 37.20 2.85
660 716 0.168568 GGACGTGACGAGGTCTCTTC 59.831 60.000 13.70 0.00 37.20 2.87
661 717 0.179220 GACGTGACGAGGTCTCTTCG 60.179 60.000 13.70 0.12 34.69 3.79
662 718 0.602106 ACGTGACGAGGTCTCTTCGA 60.602 55.000 13.70 0.00 33.15 3.71
663 719 0.516001 CGTGACGAGGTCTCTTCGAA 59.484 55.000 0.00 0.00 33.15 3.71
664 720 1.464355 CGTGACGAGGTCTCTTCGAAG 60.464 57.143 19.35 19.35 33.15 3.79
665 721 1.536331 GTGACGAGGTCTCTTCGAAGT 59.464 52.381 23.85 4.94 33.15 3.01
666 722 2.030981 GTGACGAGGTCTCTTCGAAGTT 60.031 50.000 23.85 6.80 33.15 2.66
667 723 3.188048 GTGACGAGGTCTCTTCGAAGTTA 59.812 47.826 23.85 11.10 33.15 2.24
668 724 3.436015 TGACGAGGTCTCTTCGAAGTTAG 59.564 47.826 23.85 15.26 33.15 2.34
669 725 3.672808 ACGAGGTCTCTTCGAAGTTAGA 58.327 45.455 23.85 17.27 0.00 2.10
670 726 4.070716 ACGAGGTCTCTTCGAAGTTAGAA 58.929 43.478 23.85 4.22 0.00 2.10
671 727 4.154556 ACGAGGTCTCTTCGAAGTTAGAAG 59.845 45.833 23.85 17.01 44.65 2.85
672 728 4.417506 GAGGTCTCTTCGAAGTTAGAAGC 58.582 47.826 23.85 14.55 43.40 3.86
673 729 4.083565 AGGTCTCTTCGAAGTTAGAAGCT 58.916 43.478 23.85 16.23 43.40 3.74
674 730 4.525100 AGGTCTCTTCGAAGTTAGAAGCTT 59.475 41.667 23.85 0.00 43.40 3.74
675 731 4.623595 GGTCTCTTCGAAGTTAGAAGCTTG 59.376 45.833 23.85 11.69 43.40 4.01
676 732 4.623595 GTCTCTTCGAAGTTAGAAGCTTGG 59.376 45.833 23.85 9.77 43.40 3.61
677 733 4.523173 TCTCTTCGAAGTTAGAAGCTTGGA 59.477 41.667 23.85 11.40 43.40 3.53
678 734 5.010719 TCTCTTCGAAGTTAGAAGCTTGGAA 59.989 40.000 23.85 0.00 43.40 3.53
679 735 5.794894 TCTTCGAAGTTAGAAGCTTGGAAT 58.205 37.500 23.85 0.00 43.40 3.01
680 736 5.639506 TCTTCGAAGTTAGAAGCTTGGAATG 59.360 40.000 23.85 0.00 43.40 2.67
778 835 2.410053 GCGAATGCGTGCCAAAATAAAA 59.590 40.909 0.00 0.00 40.36 1.52
803 860 1.581934 TCTTTGGCAAGTGTCTCGTG 58.418 50.000 0.00 0.00 0.00 4.35
804 861 0.588252 CTTTGGCAAGTGTCTCGTGG 59.412 55.000 0.00 0.00 0.00 4.94
806 863 3.050275 GGCAAGTGTCTCGTGGCC 61.050 66.667 0.00 0.00 42.96 5.36
916 973 2.523841 TGGCCTGGGGATCCTAAATA 57.476 50.000 12.58 0.00 0.00 1.40
1027 1084 2.664081 GGGACTGACCTCTGCCCTG 61.664 68.421 0.00 0.00 38.98 4.45
1168 1228 6.365247 CACATTTGAGAAAAAGCAGATCAAGG 59.635 38.462 0.00 0.00 32.00 3.61
1371 1431 1.529152 CCTGCATTTCAGTGCTGCCA 61.529 55.000 0.00 0.00 45.27 4.92
1504 1570 0.857311 CATGGCGTTCGTTTCGATGC 60.857 55.000 7.86 7.86 37.06 3.91
1609 1677 2.765108 TTTTCGTTCGCTTGCAATGA 57.235 40.000 0.00 0.00 0.00 2.57
1691 1761 2.098614 TGCAAAAGAAGCACAGTCCAA 58.901 42.857 0.00 0.00 37.02 3.53
1696 1766 2.829741 AGAAGCACAGTCCAAGAGAC 57.170 50.000 0.00 0.00 46.71 3.36
1703 1773 3.567473 GTCCAAGAGACGGCAAGC 58.433 61.111 0.00 0.00 35.30 4.01
1711 1781 1.911293 GAGACGGCAAGCGCATTTGA 61.911 55.000 11.47 0.00 41.24 2.69
1756 1826 6.866248 GTGATCATTTGTTTTTCCGGTGTATT 59.134 34.615 0.00 0.00 0.00 1.89
1826 1906 0.976073 GGGTTCTCGGACCTCCATCA 60.976 60.000 0.00 0.00 39.71 3.07
1846 1926 2.226437 CACTTGATCCAAGGAACAACGG 59.774 50.000 7.61 3.01 44.81 4.44
1873 1953 3.402186 CGAAGGATGGCATGGCTTA 57.598 52.632 21.08 0.54 0.00 3.09
1883 1963 0.614697 GCATGGCTTAGGTTTGGGGT 60.615 55.000 0.00 0.00 0.00 4.95
1911 1991 3.619900 TGGGCTCTATGGATCACTAGT 57.380 47.619 0.00 0.00 0.00 2.57
1927 2007 9.614792 GGATCACTAGTAATAAACCTTTGACAT 57.385 33.333 0.00 0.00 0.00 3.06
1973 2053 3.243201 GCTGACCTGCTATACAAATTGGC 60.243 47.826 0.00 0.00 0.00 4.52
2026 2106 1.884235 ACCAAAGGACAGAAGAAGCG 58.116 50.000 0.00 0.00 0.00 4.68
2095 2175 3.138625 CGCGATAGGGGACACCAT 58.861 61.111 0.00 0.00 46.58 3.55
2099 2179 1.113517 CGATAGGGGACACCATCGGT 61.114 60.000 16.34 0.00 41.94 4.69
2123 2203 2.284405 ACGTCCCTTGATCCCCGT 60.284 61.111 0.00 0.00 0.00 5.28
2124 2204 2.186903 CGTCCCTTGATCCCCGTG 59.813 66.667 0.00 0.00 0.00 4.94
2125 2205 2.656069 CGTCCCTTGATCCCCGTGT 61.656 63.158 0.00 0.00 0.00 4.49
2126 2206 1.683441 GTCCCTTGATCCCCGTGTT 59.317 57.895 0.00 0.00 0.00 3.32
2127 2207 0.392595 GTCCCTTGATCCCCGTGTTC 60.393 60.000 0.00 0.00 0.00 3.18
2128 2208 1.449601 CCCTTGATCCCCGTGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
2148 2228 2.586648 GGAGACCACCATCCTTGTTT 57.413 50.000 0.00 0.00 32.51 2.83
2149 2229 2.162681 GGAGACCACCATCCTTGTTTG 58.837 52.381 0.00 0.00 32.51 2.93
2150 2230 2.162681 GAGACCACCATCCTTGTTTGG 58.837 52.381 0.00 0.00 39.02 3.28
2151 2231 0.603065 GACCACCATCCTTGTTTGGC 59.397 55.000 0.00 0.00 36.41 4.52
2152 2232 0.831711 ACCACCATCCTTGTTTGGCC 60.832 55.000 0.00 0.00 36.41 5.36
2153 2233 1.586028 CACCATCCTTGTTTGGCCG 59.414 57.895 0.00 0.00 36.41 6.13
2154 2234 0.893270 CACCATCCTTGTTTGGCCGA 60.893 55.000 0.00 0.00 36.41 5.54
2155 2235 0.609131 ACCATCCTTGTTTGGCCGAG 60.609 55.000 0.00 0.00 36.41 4.63
2156 2236 0.609131 CCATCCTTGTTTGGCCGAGT 60.609 55.000 0.00 0.00 0.00 4.18
2190 2270 2.339712 CCCTTGTTTGGCTTGCGG 59.660 61.111 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.156736 GTGACAGCAGCAACGGTAAT 58.843 50.000 0.00 0.00 0.00 1.89
6 7 0.105964 AGTGACAGCAGCAACGGTAA 59.894 50.000 0.00 0.00 0.00 2.85
7 8 0.963225 TAGTGACAGCAGCAACGGTA 59.037 50.000 0.00 0.00 0.00 4.02
8 9 0.600255 GTAGTGACAGCAGCAACGGT 60.600 55.000 0.00 0.00 0.00 4.83
9 10 0.319900 AGTAGTGACAGCAGCAACGG 60.320 55.000 0.00 0.00 0.00 4.44
10 11 2.347697 TAGTAGTGACAGCAGCAACG 57.652 50.000 0.00 0.00 0.00 4.10
11 12 3.849911 TGATAGTAGTGACAGCAGCAAC 58.150 45.455 0.00 0.00 0.00 4.17
12 13 4.535526 TTGATAGTAGTGACAGCAGCAA 57.464 40.909 0.00 0.00 0.00 3.91
13 14 4.535526 TTTGATAGTAGTGACAGCAGCA 57.464 40.909 0.00 0.00 0.00 4.41
14 15 4.932200 ACTTTTGATAGTAGTGACAGCAGC 59.068 41.667 0.00 0.00 0.00 5.25
15 16 7.976175 TGATACTTTTGATAGTAGTGACAGCAG 59.024 37.037 0.00 0.00 34.32 4.24
16 17 7.836842 TGATACTTTTGATAGTAGTGACAGCA 58.163 34.615 0.00 0.00 34.32 4.41
17 18 8.703604 TTGATACTTTTGATAGTAGTGACAGC 57.296 34.615 0.00 0.00 34.32 4.40
37 38 9.890629 AATGATCAGTAGCAAAGTAGTTTGATA 57.109 29.630 24.16 19.72 45.22 2.15
38 39 8.798859 AATGATCAGTAGCAAAGTAGTTTGAT 57.201 30.769 24.16 20.71 45.22 2.57
39 40 8.621532 AAATGATCAGTAGCAAAGTAGTTTGA 57.378 30.769 24.16 5.04 45.22 2.69
40 41 9.121517 CAAAATGATCAGTAGCAAAGTAGTTTG 57.878 33.333 17.18 17.18 45.18 2.93
41 42 8.850156 ACAAAATGATCAGTAGCAAAGTAGTTT 58.150 29.630 0.09 0.00 0.00 2.66
42 43 8.396272 ACAAAATGATCAGTAGCAAAGTAGTT 57.604 30.769 0.09 0.00 0.00 2.24
43 44 7.986085 ACAAAATGATCAGTAGCAAAGTAGT 57.014 32.000 0.09 0.00 0.00 2.73
44 45 7.272084 GCAACAAAATGATCAGTAGCAAAGTAG 59.728 37.037 0.09 0.00 0.00 2.57
45 46 7.083858 GCAACAAAATGATCAGTAGCAAAGTA 58.916 34.615 0.09 0.00 0.00 2.24
46 47 5.922544 GCAACAAAATGATCAGTAGCAAAGT 59.077 36.000 0.09 0.00 0.00 2.66
47 48 5.921976 TGCAACAAAATGATCAGTAGCAAAG 59.078 36.000 0.09 0.00 0.00 2.77
48 49 5.840715 TGCAACAAAATGATCAGTAGCAAA 58.159 33.333 0.09 0.00 0.00 3.68
49 50 5.241285 TCTGCAACAAAATGATCAGTAGCAA 59.759 36.000 0.09 0.00 0.00 3.91
50 51 4.761227 TCTGCAACAAAATGATCAGTAGCA 59.239 37.500 0.09 4.52 0.00 3.49
51 52 5.300969 TCTGCAACAAAATGATCAGTAGC 57.699 39.130 0.09 0.00 0.00 3.58
70 71 9.565090 TCAATTCACCTGGAGATTAATTATCTG 57.435 33.333 0.00 0.00 43.75 2.90
71 72 9.566432 GTCAATTCACCTGGAGATTAATTATCT 57.434 33.333 0.00 0.00 46.41 1.98
72 73 9.342308 TGTCAATTCACCTGGAGATTAATTATC 57.658 33.333 0.00 0.00 0.00 1.75
73 74 9.699410 TTGTCAATTCACCTGGAGATTAATTAT 57.301 29.630 0.00 0.00 0.00 1.28
74 75 8.956426 GTTGTCAATTCACCTGGAGATTAATTA 58.044 33.333 0.00 0.00 0.00 1.40
75 76 7.671398 AGTTGTCAATTCACCTGGAGATTAATT 59.329 33.333 0.00 0.00 0.00 1.40
76 77 7.177878 AGTTGTCAATTCACCTGGAGATTAAT 58.822 34.615 0.00 0.00 0.00 1.40
77 78 6.542821 AGTTGTCAATTCACCTGGAGATTAA 58.457 36.000 0.00 0.00 0.00 1.40
78 79 6.126863 AGTTGTCAATTCACCTGGAGATTA 57.873 37.500 0.00 0.00 0.00 1.75
79 80 4.990526 AGTTGTCAATTCACCTGGAGATT 58.009 39.130 0.00 0.00 0.00 2.40
80 81 4.042062 TGAGTTGTCAATTCACCTGGAGAT 59.958 41.667 6.67 0.00 0.00 2.75
81 82 3.390967 TGAGTTGTCAATTCACCTGGAGA 59.609 43.478 6.67 0.00 0.00 3.71
82 83 3.743521 TGAGTTGTCAATTCACCTGGAG 58.256 45.455 6.67 0.00 0.00 3.86
83 84 3.743521 CTGAGTTGTCAATTCACCTGGA 58.256 45.455 6.67 0.00 30.14 3.86
84 85 2.227388 GCTGAGTTGTCAATTCACCTGG 59.773 50.000 6.67 0.00 30.14 4.45
85 86 2.227388 GGCTGAGTTGTCAATTCACCTG 59.773 50.000 6.67 0.04 30.14 4.00
86 87 2.508526 GGCTGAGTTGTCAATTCACCT 58.491 47.619 6.67 0.00 30.14 4.00
87 88 1.197721 CGGCTGAGTTGTCAATTCACC 59.802 52.381 6.67 11.41 30.14 4.02
88 89 1.400242 GCGGCTGAGTTGTCAATTCAC 60.400 52.381 6.67 4.87 30.14 3.18
89 90 0.874390 GCGGCTGAGTTGTCAATTCA 59.126 50.000 10.07 10.07 30.14 2.57
90 91 1.160137 AGCGGCTGAGTTGTCAATTC 58.840 50.000 0.00 1.25 30.14 2.17
91 92 2.472695 TAGCGGCTGAGTTGTCAATT 57.527 45.000 13.86 0.00 30.14 2.32
92 93 2.472695 TTAGCGGCTGAGTTGTCAAT 57.527 45.000 13.86 0.00 30.14 2.57
93 94 2.472695 ATTAGCGGCTGAGTTGTCAA 57.527 45.000 13.86 0.00 30.14 3.18
94 95 2.418197 GGTATTAGCGGCTGAGTTGTCA 60.418 50.000 13.86 0.00 0.00 3.58
95 96 2.159085 AGGTATTAGCGGCTGAGTTGTC 60.159 50.000 13.86 0.00 0.00 3.18
96 97 1.831736 AGGTATTAGCGGCTGAGTTGT 59.168 47.619 13.86 0.00 0.00 3.32
97 98 2.604046 AGGTATTAGCGGCTGAGTTG 57.396 50.000 13.86 0.00 0.00 3.16
98 99 2.500098 TGAAGGTATTAGCGGCTGAGTT 59.500 45.455 13.86 0.00 0.00 3.01
99 100 2.108168 TGAAGGTATTAGCGGCTGAGT 58.892 47.619 13.86 0.66 0.00 3.41
100 101 2.890808 TGAAGGTATTAGCGGCTGAG 57.109 50.000 13.86 0.00 0.00 3.35
101 102 3.620427 TTTGAAGGTATTAGCGGCTGA 57.380 42.857 13.86 4.43 0.00 4.26
102 103 6.428159 AGAATATTTGAAGGTATTAGCGGCTG 59.572 38.462 13.86 0.00 0.00 4.85
103 104 6.534634 AGAATATTTGAAGGTATTAGCGGCT 58.465 36.000 7.98 7.98 0.00 5.52
104 105 6.803154 AGAATATTTGAAGGTATTAGCGGC 57.197 37.500 0.00 0.00 0.00 6.53
105 106 8.076178 CCAAAGAATATTTGAAGGTATTAGCGG 58.924 37.037 1.46 0.00 0.00 5.52
106 107 7.591426 GCCAAAGAATATTTGAAGGTATTAGCG 59.409 37.037 1.46 0.00 0.00 4.26
107 108 8.633561 AGCCAAAGAATATTTGAAGGTATTAGC 58.366 33.333 1.46 0.00 0.00 3.09
109 110 9.131791 GGAGCCAAAGAATATTTGAAGGTATTA 57.868 33.333 1.46 0.00 0.00 0.98
110 111 7.069950 GGGAGCCAAAGAATATTTGAAGGTATT 59.930 37.037 1.46 0.00 0.00 1.89
111 112 6.551227 GGGAGCCAAAGAATATTTGAAGGTAT 59.449 38.462 1.46 0.00 0.00 2.73
112 113 5.891551 GGGAGCCAAAGAATATTTGAAGGTA 59.108 40.000 1.46 0.00 0.00 3.08
113 114 4.711846 GGGAGCCAAAGAATATTTGAAGGT 59.288 41.667 1.46 0.00 0.00 3.50
114 115 4.100035 GGGGAGCCAAAGAATATTTGAAGG 59.900 45.833 1.46 0.00 0.00 3.46
115 116 4.958581 AGGGGAGCCAAAGAATATTTGAAG 59.041 41.667 1.46 0.00 0.00 3.02
116 117 4.946646 AGGGGAGCCAAAGAATATTTGAA 58.053 39.130 1.46 0.00 0.00 2.69
117 118 4.608170 AGGGGAGCCAAAGAATATTTGA 57.392 40.909 1.46 0.00 0.00 2.69
118 119 4.467438 ACAAGGGGAGCCAAAGAATATTTG 59.533 41.667 0.00 0.00 0.00 2.32
119 120 4.467438 CACAAGGGGAGCCAAAGAATATTT 59.533 41.667 0.00 0.00 0.00 1.40
120 121 4.026052 CACAAGGGGAGCCAAAGAATATT 58.974 43.478 0.00 0.00 0.00 1.28
121 122 3.011708 ACACAAGGGGAGCCAAAGAATAT 59.988 43.478 0.00 0.00 0.00 1.28
122 123 2.378547 ACACAAGGGGAGCCAAAGAATA 59.621 45.455 0.00 0.00 0.00 1.75
123 124 1.147817 ACACAAGGGGAGCCAAAGAAT 59.852 47.619 0.00 0.00 0.00 2.40
124 125 0.555769 ACACAAGGGGAGCCAAAGAA 59.444 50.000 0.00 0.00 0.00 2.52
125 126 0.110486 GACACAAGGGGAGCCAAAGA 59.890 55.000 0.00 0.00 0.00 2.52
126 127 1.237285 CGACACAAGGGGAGCCAAAG 61.237 60.000 0.00 0.00 0.00 2.77
127 128 1.228124 CGACACAAGGGGAGCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
128 129 1.701031 TTCGACACAAGGGGAGCCAA 61.701 55.000 0.00 0.00 0.00 4.52
129 130 1.488705 ATTCGACACAAGGGGAGCCA 61.489 55.000 0.00 0.00 0.00 4.75
130 131 0.322546 AATTCGACACAAGGGGAGCC 60.323 55.000 0.00 0.00 0.00 4.70
131 132 1.534729 AAATTCGACACAAGGGGAGC 58.465 50.000 0.00 0.00 0.00 4.70
132 133 6.995511 TTTATAAATTCGACACAAGGGGAG 57.004 37.500 0.00 0.00 0.00 4.30
133 134 7.948034 AATTTATAAATTCGACACAAGGGGA 57.052 32.000 16.15 0.00 33.54 4.81
134 135 7.491048 CCAAATTTATAAATTCGACACAAGGGG 59.509 37.037 20.86 8.45 37.62 4.79
135 136 7.491048 CCCAAATTTATAAATTCGACACAAGGG 59.509 37.037 20.86 16.53 37.62 3.95
136 137 8.032451 ACCCAAATTTATAAATTCGACACAAGG 58.968 33.333 20.86 14.70 37.62 3.61
137 138 8.980143 ACCCAAATTTATAAATTCGACACAAG 57.020 30.769 20.86 8.98 37.62 3.16
138 139 9.197694 CAACCCAAATTTATAAATTCGACACAA 57.802 29.630 20.86 0.00 37.62 3.33
139 140 8.577296 TCAACCCAAATTTATAAATTCGACACA 58.423 29.630 20.86 3.88 37.62 3.72
140 141 8.973835 TCAACCCAAATTTATAAATTCGACAC 57.026 30.769 20.86 0.00 37.62 3.67
160 161 4.996788 TTCGAGGGTAGAGTATTCAACC 57.003 45.455 0.00 0.00 0.00 3.77
161 162 6.310711 CAGTTTTCGAGGGTAGAGTATTCAAC 59.689 42.308 0.00 0.00 0.00 3.18
162 163 6.014840 ACAGTTTTCGAGGGTAGAGTATTCAA 60.015 38.462 0.00 0.00 0.00 2.69
163 164 5.479375 ACAGTTTTCGAGGGTAGAGTATTCA 59.521 40.000 0.00 0.00 0.00 2.57
164 165 5.963594 ACAGTTTTCGAGGGTAGAGTATTC 58.036 41.667 0.00 0.00 0.00 1.75
165 166 5.997384 ACAGTTTTCGAGGGTAGAGTATT 57.003 39.130 0.00 0.00 0.00 1.89
166 167 5.997384 AACAGTTTTCGAGGGTAGAGTAT 57.003 39.130 0.00 0.00 0.00 2.12
167 168 6.660521 TCATAACAGTTTTCGAGGGTAGAGTA 59.339 38.462 0.00 0.00 0.00 2.59
168 169 5.479375 TCATAACAGTTTTCGAGGGTAGAGT 59.521 40.000 0.00 0.00 0.00 3.24
169 170 5.962433 TCATAACAGTTTTCGAGGGTAGAG 58.038 41.667 0.00 0.00 0.00 2.43
170 171 5.988310 TCATAACAGTTTTCGAGGGTAGA 57.012 39.130 0.00 0.00 0.00 2.59
171 172 5.753921 GGATCATAACAGTTTTCGAGGGTAG 59.246 44.000 0.00 0.00 0.00 3.18
172 173 5.395990 GGGATCATAACAGTTTTCGAGGGTA 60.396 44.000 0.00 0.00 0.00 3.69
173 174 4.514401 GGATCATAACAGTTTTCGAGGGT 58.486 43.478 0.00 0.00 0.00 4.34
174 175 3.877508 GGGATCATAACAGTTTTCGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
175 176 3.877508 GGGGATCATAACAGTTTTCGAGG 59.122 47.826 0.00 0.00 0.00 4.63
176 177 4.770795 AGGGGATCATAACAGTTTTCGAG 58.229 43.478 0.00 0.00 0.00 4.04
177 178 4.837093 AGGGGATCATAACAGTTTTCGA 57.163 40.909 0.00 0.00 0.00 3.71
178 179 7.442656 AGTATAGGGGATCATAACAGTTTTCG 58.557 38.462 0.00 0.00 0.00 3.46
179 180 9.057089 CAAGTATAGGGGATCATAACAGTTTTC 57.943 37.037 0.00 0.00 0.00 2.29
180 181 8.557450 ACAAGTATAGGGGATCATAACAGTTTT 58.443 33.333 0.00 0.00 0.00 2.43
181 182 7.993183 CACAAGTATAGGGGATCATAACAGTTT 59.007 37.037 0.00 0.00 0.00 2.66
182 183 7.420214 CCACAAGTATAGGGGATCATAACAGTT 60.420 40.741 0.00 0.00 0.00 3.16
183 184 6.043243 CCACAAGTATAGGGGATCATAACAGT 59.957 42.308 0.00 0.00 0.00 3.55
184 185 6.467677 CCACAAGTATAGGGGATCATAACAG 58.532 44.000 0.00 0.00 0.00 3.16
185 186 5.309543 CCCACAAGTATAGGGGATCATAACA 59.690 44.000 0.00 0.00 43.57 2.41
186 187 5.805728 CCCACAAGTATAGGGGATCATAAC 58.194 45.833 0.00 0.00 43.57 1.89
196 197 6.235231 ACACTGATAACCCACAAGTATAGG 57.765 41.667 0.00 0.00 0.00 2.57
197 198 6.127168 TGGACACTGATAACCCACAAGTATAG 60.127 42.308 0.00 0.00 0.00 1.31
198 199 5.722441 TGGACACTGATAACCCACAAGTATA 59.278 40.000 0.00 0.00 0.00 1.47
199 200 4.534500 TGGACACTGATAACCCACAAGTAT 59.466 41.667 0.00 0.00 0.00 2.12
200 201 3.904965 TGGACACTGATAACCCACAAGTA 59.095 43.478 0.00 0.00 0.00 2.24
201 202 2.708861 TGGACACTGATAACCCACAAGT 59.291 45.455 0.00 0.00 0.00 3.16
202 203 3.417069 TGGACACTGATAACCCACAAG 57.583 47.619 0.00 0.00 0.00 3.16
203 204 3.561097 CCATGGACACTGATAACCCACAA 60.561 47.826 5.56 0.00 0.00 3.33
204 205 2.026356 CCATGGACACTGATAACCCACA 60.026 50.000 5.56 0.00 0.00 4.17
205 206 2.643551 CCATGGACACTGATAACCCAC 58.356 52.381 5.56 0.00 0.00 4.61
206 207 1.064758 GCCATGGACACTGATAACCCA 60.065 52.381 18.40 0.00 0.00 4.51
207 208 1.064758 TGCCATGGACACTGATAACCC 60.065 52.381 18.40 0.00 0.00 4.11
208 209 2.017049 GTGCCATGGACACTGATAACC 58.983 52.381 23.79 2.16 35.12 2.85
209 210 2.991250 AGTGCCATGGACACTGATAAC 58.009 47.619 29.41 10.32 46.38 1.89
219 220 1.696884 TGTGACTACAAGTGCCATGGA 59.303 47.619 18.40 0.00 32.88 3.41
254 255 7.914871 AGAAAATTGCCAAGTTAAAATGCAAAC 59.085 29.630 0.00 0.00 44.17 2.93
255 256 7.994194 AGAAAATTGCCAAGTTAAAATGCAAA 58.006 26.923 0.00 0.00 44.17 3.68
258 259 7.425577 AGAGAAAATTGCCAAGTTAAAATGC 57.574 32.000 0.00 0.00 0.00 3.56
323 325 0.469070 TCCGTTCCCCTGTCGAAAAA 59.531 50.000 0.00 0.00 0.00 1.94
324 326 0.688487 ATCCGTTCCCCTGTCGAAAA 59.312 50.000 0.00 0.00 0.00 2.29
345 347 3.602483 GGTAGCTTTACATTTGGTCGGA 58.398 45.455 0.00 0.00 0.00 4.55
365 367 3.278574 TCACATCTTTAGCGAATTGGGG 58.721 45.455 0.00 0.00 0.00 4.96
366 368 4.635765 TCTTCACATCTTTAGCGAATTGGG 59.364 41.667 0.00 0.00 0.00 4.12
430 433 1.886542 GGATGTTGCCTTTCCGTTTCT 59.113 47.619 0.00 0.00 0.00 2.52
459 462 1.151777 GGTCGCCACACCATACATCG 61.152 60.000 0.00 0.00 36.32 3.84
465 468 2.282180 GGTTGGTCGCCACACCAT 60.282 61.111 17.01 0.00 46.21 3.55
486 489 0.320697 AGAAAGGGTACGCCTCACAC 59.679 55.000 6.27 0.00 34.45 3.82
503 506 5.343058 CGACGACCTTGACGTTTAAATAAGA 59.657 40.000 0.00 0.00 43.97 2.10
513 516 0.386858 CATGTCGACGACCTTGACGT 60.387 55.000 24.33 0.00 46.58 4.34
514 517 0.386858 ACATGTCGACGACCTTGACG 60.387 55.000 25.71 12.19 36.15 4.35
516 519 0.038618 CCACATGTCGACGACCTTGA 60.039 55.000 25.71 10.76 0.00 3.02
525 528 5.852282 TCTCTCATTTATCCACATGTCGA 57.148 39.130 0.00 0.00 0.00 4.20
583 586 4.044308 TGCCATCCCATTCTACTCCTTTA 58.956 43.478 0.00 0.00 0.00 1.85
584 587 2.852449 TGCCATCCCATTCTACTCCTTT 59.148 45.455 0.00 0.00 0.00 3.11
628 684 3.868661 CGTCACGTCCATGAATAATTGGA 59.131 43.478 0.00 0.00 39.70 3.53
629 685 3.868661 TCGTCACGTCCATGAATAATTGG 59.131 43.478 0.00 0.00 0.00 3.16
630 686 4.025730 CCTCGTCACGTCCATGAATAATTG 60.026 45.833 0.00 0.00 0.00 2.32
631 687 4.119862 CCTCGTCACGTCCATGAATAATT 58.880 43.478 0.00 0.00 0.00 1.40
632 688 3.132289 ACCTCGTCACGTCCATGAATAAT 59.868 43.478 0.00 0.00 0.00 1.28
633 689 2.494471 ACCTCGTCACGTCCATGAATAA 59.506 45.455 0.00 0.00 0.00 1.40
634 690 2.097036 ACCTCGTCACGTCCATGAATA 58.903 47.619 0.00 0.00 0.00 1.75
635 691 0.895530 ACCTCGTCACGTCCATGAAT 59.104 50.000 0.00 0.00 0.00 2.57
636 692 0.242825 GACCTCGTCACGTCCATGAA 59.757 55.000 0.00 0.00 32.09 2.57
637 693 0.608308 AGACCTCGTCACGTCCATGA 60.608 55.000 0.00 0.00 34.60 3.07
638 694 0.179161 GAGACCTCGTCACGTCCATG 60.179 60.000 0.00 0.00 34.60 3.66
639 695 0.322636 AGAGACCTCGTCACGTCCAT 60.323 55.000 0.00 0.00 34.60 3.41
640 696 0.536687 AAGAGACCTCGTCACGTCCA 60.537 55.000 0.00 0.00 34.60 4.02
641 697 0.168568 GAAGAGACCTCGTCACGTCC 59.831 60.000 0.00 0.00 37.88 4.79
642 698 0.179220 CGAAGAGACCTCGTCACGTC 60.179 60.000 12.14 0.47 37.85 4.34
643 699 0.602106 TCGAAGAGACCTCGTCACGT 60.602 55.000 12.14 0.00 37.85 4.49
644 700 0.516001 TTCGAAGAGACCTCGTCACG 59.484 55.000 12.14 0.00 37.85 4.35
645 701 1.536331 ACTTCGAAGAGACCTCGTCAC 59.464 52.381 31.08 0.00 37.85 3.67
646 702 1.893544 ACTTCGAAGAGACCTCGTCA 58.106 50.000 31.08 0.00 37.85 4.35
647 703 2.993449 AACTTCGAAGAGACCTCGTC 57.007 50.000 31.08 3.39 38.43 4.20
648 704 3.672808 TCTAACTTCGAAGAGACCTCGT 58.327 45.455 31.08 4.29 38.43 4.18
649 705 4.654015 CTTCTAACTTCGAAGAGACCTCG 58.346 47.826 31.08 11.48 40.15 4.63
650 706 4.157105 AGCTTCTAACTTCGAAGAGACCTC 59.843 45.833 31.08 14.17 40.15 3.85
651 707 4.083565 AGCTTCTAACTTCGAAGAGACCT 58.916 43.478 31.08 17.71 40.15 3.85
652 708 4.443913 AGCTTCTAACTTCGAAGAGACC 57.556 45.455 31.08 16.04 40.15 3.85
653 709 4.623595 CCAAGCTTCTAACTTCGAAGAGAC 59.376 45.833 31.08 12.93 40.15 3.36
654 710 4.523173 TCCAAGCTTCTAACTTCGAAGAGA 59.477 41.667 31.08 20.54 40.15 3.10
655 711 4.810790 TCCAAGCTTCTAACTTCGAAGAG 58.189 43.478 31.08 18.58 40.15 2.85
656 712 4.866508 TCCAAGCTTCTAACTTCGAAGA 57.133 40.909 31.08 9.29 40.15 2.87
657 713 5.163814 CCATTCCAAGCTTCTAACTTCGAAG 60.164 44.000 23.43 23.43 40.57 3.79
658 714 4.695455 CCATTCCAAGCTTCTAACTTCGAA 59.305 41.667 0.00 0.00 30.55 3.71
659 715 4.253685 CCATTCCAAGCTTCTAACTTCGA 58.746 43.478 0.00 0.00 0.00 3.71
660 716 3.375299 CCCATTCCAAGCTTCTAACTTCG 59.625 47.826 0.00 0.00 0.00 3.79
661 717 4.336280 ACCCATTCCAAGCTTCTAACTTC 58.664 43.478 0.00 0.00 0.00 3.01
662 718 4.388577 ACCCATTCCAAGCTTCTAACTT 57.611 40.909 0.00 0.00 0.00 2.66
663 719 4.336280 GAACCCATTCCAAGCTTCTAACT 58.664 43.478 0.00 0.00 0.00 2.24
664 720 4.703645 GAACCCATTCCAAGCTTCTAAC 57.296 45.455 0.00 0.00 0.00 2.34
722 779 0.390860 ACCAGATCGCATGGAGTAGC 59.609 55.000 6.49 0.00 40.51 3.58
778 835 5.473504 ACGAGACACTTGCCAAAGAAATATT 59.526 36.000 0.00 0.00 36.84 1.28
803 860 2.442830 GGGATCTTGGCCTTGGCC 60.443 66.667 22.91 22.91 0.00 5.36
804 861 2.442830 GGGGATCTTGGCCTTGGC 60.443 66.667 3.32 2.49 0.00 4.52
805 862 2.280079 GGGGGATCTTGGCCTTGG 59.720 66.667 3.32 0.00 0.00 3.61
806 863 1.228510 GAGGGGGATCTTGGCCTTG 59.771 63.158 3.32 0.00 0.00 3.61
916 973 7.628234 AGACTCAATATTGTCACAGAAGGAAT 58.372 34.615 14.97 0.00 35.81 3.01
959 1016 3.164977 TGGCCACCGGACAAGTGA 61.165 61.111 9.46 0.00 38.06 3.41
1027 1084 7.389053 CCAGGAGAAGTATTGCCAGTAATTATC 59.611 40.741 0.00 0.00 0.00 1.75
1168 1228 0.040425 AACACAATCTCAAACGGCGC 60.040 50.000 6.90 0.00 0.00 6.53
1640 1710 1.133790 AGTAATACGGCCACGAGACAC 59.866 52.381 2.24 0.00 44.60 3.67
1641 1711 1.466856 AGTAATACGGCCACGAGACA 58.533 50.000 2.24 0.00 44.60 3.41
1642 1712 2.604132 GCTAGTAATACGGCCACGAGAC 60.604 54.545 2.24 0.00 44.60 3.36
1643 1713 1.605710 GCTAGTAATACGGCCACGAGA 59.394 52.381 2.24 0.00 44.60 4.04
1644 1714 1.662309 CGCTAGTAATACGGCCACGAG 60.662 57.143 2.24 0.00 44.60 4.18
1645 1715 0.308684 CGCTAGTAATACGGCCACGA 59.691 55.000 2.24 0.00 44.60 4.35
1647 1717 3.190337 CCGCTAGTAATACGGCCAC 57.810 57.895 2.24 0.00 40.55 5.01
1691 1761 1.672356 AAATGCGCTTGCCGTCTCT 60.672 52.632 9.73 0.00 39.71 3.10
1696 1766 3.683055 CATCAAATGCGCTTGCCG 58.317 55.556 9.73 0.00 38.03 5.69
1711 1781 3.390521 TTCTCCACCTCGCGGCAT 61.391 61.111 6.13 0.00 0.00 4.40
1715 1785 4.052229 ACGGTTCTCCACCTCGCG 62.052 66.667 0.00 0.00 44.69 5.87
1723 1793 4.766404 AAACAAATGATCACGGTTCTCC 57.234 40.909 0.00 0.00 0.00 3.71
1727 1797 4.295051 CGGAAAAACAAATGATCACGGTT 58.705 39.130 0.00 0.00 0.00 4.44
1756 1826 2.171027 ACTCCAAGTAAAACGGGTGACA 59.829 45.455 0.00 0.00 0.00 3.58
1814 1894 1.202580 GGATCAAGTGATGGAGGTCCG 60.203 57.143 0.00 0.00 39.43 4.79
1826 1906 2.504367 CCGTTGTTCCTTGGATCAAGT 58.496 47.619 12.00 0.00 39.58 3.16
1846 1926 2.107141 CATCCTTCGGTCTCGCCC 59.893 66.667 0.00 0.00 36.13 6.13
1873 1953 1.564348 CCATGCTAGTACCCCAAACCT 59.436 52.381 0.00 0.00 0.00 3.50
1899 1979 9.614792 GTCAAAGGTTTATTACTAGTGATCCAT 57.385 33.333 5.39 0.00 0.00 3.41
1927 2007 5.350365 CCGGATGTCGAAACAATTTCTTCTA 59.650 40.000 0.00 0.00 42.43 2.10
1930 2010 3.365969 GCCGGATGTCGAAACAATTTCTT 60.366 43.478 5.05 0.00 42.43 2.52
1931 2011 2.161609 GCCGGATGTCGAAACAATTTCT 59.838 45.455 5.05 0.00 42.43 2.52
1973 2053 5.988092 GCTTCTATAGCTGCAAGAAAGATG 58.012 41.667 1.02 1.49 46.77 2.90
2034 2114 0.317479 CCGATACCTTTAGGGCGAGG 59.683 60.000 0.10 0.00 40.27 4.63
2063 2143 1.867812 CGCGATCGACGAAGCTCAA 60.868 57.895 21.57 0.00 45.77 3.02
2106 2186 2.284405 ACGGGGATCAAGGGACGT 60.284 61.111 0.00 0.00 0.00 4.34
2123 2203 1.550130 GGATGGTGGTCTCCCGAACA 61.550 60.000 0.00 0.00 33.59 3.18
2124 2204 1.221021 GGATGGTGGTCTCCCGAAC 59.779 63.158 0.00 0.00 0.00 3.95
2125 2205 0.546747 AAGGATGGTGGTCTCCCGAA 60.547 55.000 0.00 0.00 31.49 4.30
2126 2206 1.080354 AAGGATGGTGGTCTCCCGA 59.920 57.895 0.00 0.00 31.49 5.14
2127 2207 1.221840 CAAGGATGGTGGTCTCCCG 59.778 63.158 0.00 0.00 31.49 5.14
2128 2208 0.698818 AACAAGGATGGTGGTCTCCC 59.301 55.000 0.00 0.00 31.49 4.30
2129 2209 2.162681 CAAACAAGGATGGTGGTCTCC 58.837 52.381 0.00 0.00 0.00 3.71
2130 2210 2.162681 CCAAACAAGGATGGTGGTCTC 58.837 52.381 0.00 0.00 33.41 3.36
2131 2211 1.823250 GCCAAACAAGGATGGTGGTCT 60.823 52.381 0.00 0.00 37.86 3.85
2132 2212 0.603065 GCCAAACAAGGATGGTGGTC 59.397 55.000 0.00 0.00 37.86 4.02
2133 2213 0.831711 GGCCAAACAAGGATGGTGGT 60.832 55.000 0.00 0.00 37.86 4.16
2134 2214 1.876497 CGGCCAAACAAGGATGGTGG 61.876 60.000 2.24 0.00 39.00 4.61
2135 2215 0.893270 TCGGCCAAACAAGGATGGTG 60.893 55.000 2.24 0.00 39.00 4.17
2136 2216 0.609131 CTCGGCCAAACAAGGATGGT 60.609 55.000 2.24 0.00 39.00 3.55
2137 2217 0.609131 ACTCGGCCAAACAAGGATGG 60.609 55.000 2.24 0.00 39.80 3.51
2138 2218 0.523072 CACTCGGCCAAACAAGGATG 59.477 55.000 2.24 0.00 0.00 3.51
2139 2219 0.110486 ACACTCGGCCAAACAAGGAT 59.890 50.000 2.24 0.00 0.00 3.24
2140 2220 0.106918 AACACTCGGCCAAACAAGGA 60.107 50.000 2.24 0.00 0.00 3.36
2141 2221 0.310854 GAACACTCGGCCAAACAAGG 59.689 55.000 2.24 0.00 0.00 3.61
2142 2222 0.041312 CGAACACTCGGCCAAACAAG 60.041 55.000 2.24 0.00 41.57 3.16
2143 2223 2.018544 CGAACACTCGGCCAAACAA 58.981 52.632 2.24 0.00 41.57 2.83
2144 2224 3.725819 CGAACACTCGGCCAAACA 58.274 55.556 2.24 0.00 41.57 2.83
2152 2232 3.362262 TGGTCTCCCGAACACTCG 58.638 61.111 0.00 0.00 45.02 4.18
2156 2236 2.513259 GGTGGTGGTCTCCCGAACA 61.513 63.158 0.00 0.00 33.59 3.18
2224 2304 0.103937 CCCTCTGACGAGATTCTGCC 59.896 60.000 0.00 0.00 39.74 4.85
2226 2306 0.248825 CGCCCTCTGACGAGATTCTG 60.249 60.000 0.00 0.00 39.74 3.02
2227 2307 1.388065 CCGCCCTCTGACGAGATTCT 61.388 60.000 0.00 0.00 39.74 2.40
2253 2334 2.945008 TCTCTTCTTAATGCAATGCGGG 59.055 45.455 0.00 0.00 0.00 6.13
2310 2394 4.808895 GCTGATAAACCGTGTCATGTATGA 59.191 41.667 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.