Multiple sequence alignment - TraesCS3B01G361100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G361100 chr3B 100.000 6262 0 0 1 6262 572744761 572751022 0.000000e+00 11564
1 TraesCS3B01G361100 chr3A 89.051 3087 181 80 1 2994 575493590 575496612 0.000000e+00 3683
2 TraesCS3B01G361100 chr3A 91.502 1624 97 21 4671 6262 575498745 575500359 0.000000e+00 2196
3 TraesCS3B01G361100 chr3A 85.778 893 100 20 3767 4648 575497603 575498479 0.000000e+00 920
4 TraesCS3B01G361100 chr3D 92.674 1447 73 11 1579 2994 437490391 437491835 0.000000e+00 2054
5 TraesCS3B01G361100 chr3D 85.318 1335 147 28 3251 4570 437492106 437493406 0.000000e+00 1334
6 TraesCS3B01G361100 chr3D 94.618 799 32 7 5470 6262 437494268 437495061 0.000000e+00 1227
7 TraesCS3B01G361100 chr3D 90.023 882 49 23 730 1582 437489024 437489895 0.000000e+00 1105
8 TraesCS3B01G361100 chr3D 92.760 663 41 5 4671 5329 437493542 437494201 0.000000e+00 952
9 TraesCS3B01G361100 chr3D 91.979 561 38 3 1 558 437488052 437488608 0.000000e+00 780
10 TraesCS3B01G361100 chr3D 90.476 126 4 3 518 641 437488608 437488727 6.500000e-35 159
11 TraesCS3B01G361100 chr6B 90.608 181 17 0 1 181 711514069 711513889 2.260000e-59 241
12 TraesCS3B01G361100 chr6B 91.860 172 13 1 1 171 711624997 711624826 8.110000e-59 239
13 TraesCS3B01G361100 chr6B 90.055 181 17 1 1 181 711516759 711516580 3.770000e-57 233
14 TraesCS3B01G361100 chr6B 89.503 181 18 1 1 181 711518726 711518547 1.760000e-55 228
15 TraesCS3B01G361100 chr6B 90.173 173 16 1 3 175 711521672 711521501 2.270000e-54 224
16 TraesCS3B01G361100 chr6B 89.941 169 16 1 13 181 711519697 711519530 3.800000e-52 217
17 TraesCS3B01G361100 chr6B 91.489 141 12 0 41 181 711512935 711512795 1.780000e-45 195
18 TraesCS3B01G361100 chr6D 88.360 189 15 2 5393 5581 454000870 454001051 2.940000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G361100 chr3B 572744761 572751022 6261 False 11564.000000 11564 100.000000 1 6262 1 chr3B.!!$F1 6261
1 TraesCS3B01G361100 chr3A 575493590 575500359 6769 False 2266.333333 3683 88.777000 1 6262 3 chr3A.!!$F1 6261
2 TraesCS3B01G361100 chr3D 437488052 437495061 7009 False 1087.285714 2054 91.121143 1 6262 7 chr3D.!!$F1 6261
3 TraesCS3B01G361100 chr6B 711512795 711521672 8877 True 223.000000 241 90.294833 1 181 6 chr6B.!!$R2 180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 7230 0.036022 GAGTTCCTGCTCCAAGCTGT 59.964 55.0 0.11 0.0 42.97 4.40 F
545 7246 0.037326 CTGTATGCGTGGTGTGGAGT 60.037 55.0 0.00 0.0 0.00 3.85 F
981 7966 0.107459 ATCTCTTTGCCCGCTTCTCC 60.107 55.0 0.00 0.0 0.00 3.71 F
1536 8582 0.806868 AGCTCCGTTGTGATGCATTG 59.193 50.0 0.00 0.0 0.00 2.82 F
3085 10662 0.034574 TCCATTAAGGCATGTGCGGT 60.035 50.0 0.00 0.0 43.26 5.68 F
3665 11385 0.033601 TTGGGCCATACCACATCACC 60.034 55.0 7.26 0.0 41.03 4.02 F
3831 11678 0.036732 TACCTTGCTGCTGAAGTGGG 59.963 55.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 9636 0.035439 TCTTCCACCTGCCGGATTTC 60.035 55.000 5.05 0.00 30.99 2.17 R
2083 9640 1.281419 TTAATCTTCCACCTGCCGGA 58.719 50.000 5.05 0.00 0.00 5.14 R
2611 10186 0.545171 AGTGCCCTGATGATCTGTGG 59.455 55.000 0.00 0.00 0.00 4.17 R
3276 10915 1.340600 CCGGGGACATTAAGCTTTGGA 60.341 52.381 3.20 0.00 0.00 3.53 R
4017 11865 0.657659 CGGAGTCGCTGCAGTATACG 60.658 60.000 16.64 10.39 0.00 3.06 R
5120 13221 0.251832 ACCTCACTCGGTCAGTCCAT 60.252 55.000 0.00 0.00 30.26 3.41 R
5359 13474 1.003116 GATTCCTTACTGCGCATGCTG 60.003 52.381 12.24 10.56 44.78 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 4957 2.350895 CTCCATGCCGGTGGTGAA 59.649 61.111 10.70 0.00 40.27 3.18
143 6765 1.745115 GATGCCGTGCAAGCACCTA 60.745 57.895 18.54 6.40 44.40 3.08
155 6777 1.511613 AGCACCTATACCATGCCAGT 58.488 50.000 0.00 0.00 40.33 4.00
259 6881 4.218686 AGCCCGCCCACAACCTTT 62.219 61.111 0.00 0.00 0.00 3.11
374 6996 0.321671 CTTTCTCGTTCCTCTGGCCA 59.678 55.000 4.71 4.71 0.00 5.36
473 7098 2.339769 GACCCTGGCCAGATAACCTAT 58.660 52.381 34.91 9.38 0.00 2.57
476 7101 2.040412 CCCTGGCCAGATAACCTATTCC 59.960 54.545 34.91 0.00 0.00 3.01
488 7113 1.755380 ACCTATTCCGAGTGGCACTAC 59.245 52.381 22.11 13.04 34.14 2.73
505 7130 2.416107 TACGACCCGTGACACTCCCT 62.416 60.000 3.68 0.00 41.39 4.20
506 7131 2.971452 GACCCGTGACACTCCCTC 59.029 66.667 3.68 0.00 0.00 4.30
507 7132 2.603776 ACCCGTGACACTCCCTCC 60.604 66.667 3.68 0.00 0.00 4.30
508 7133 3.391382 CCCGTGACACTCCCTCCC 61.391 72.222 3.68 0.00 0.00 4.30
509 7134 2.603473 CCGTGACACTCCCTCCCA 60.603 66.667 3.68 0.00 0.00 4.37
529 7230 0.036022 GAGTTCCTGCTCCAAGCTGT 59.964 55.000 0.11 0.00 42.97 4.40
531 7232 1.912043 AGTTCCTGCTCCAAGCTGTAT 59.088 47.619 0.11 0.00 42.97 2.29
545 7246 0.037326 CTGTATGCGTGGTGTGGAGT 60.037 55.000 0.00 0.00 0.00 3.85
549 7290 2.489938 ATGCGTGGTGTGGAGTTTAT 57.510 45.000 0.00 0.00 0.00 1.40
552 7293 4.739587 TGCGTGGTGTGGAGTTTATATA 57.260 40.909 0.00 0.00 0.00 0.86
554 7295 6.408107 TGCGTGGTGTGGAGTTTATATATA 57.592 37.500 0.00 0.00 0.00 0.86
555 7296 6.999950 TGCGTGGTGTGGAGTTTATATATAT 58.000 36.000 0.00 0.00 0.00 0.86
646 7393 1.916506 AGCTGTCTACTGAGCAGTGA 58.083 50.000 13.12 6.12 42.52 3.41
648 7395 2.029470 AGCTGTCTACTGAGCAGTGAAC 60.029 50.000 13.12 10.77 42.52 3.18
662 7418 7.484140 TGAGCAGTGAACTATATTCTGTAGTG 58.516 38.462 0.00 0.00 32.94 2.74
677 7612 5.503927 TCTGTAGTGAAGTATACCGGTTCT 58.496 41.667 15.04 6.61 0.00 3.01
685 7620 5.419788 TGAAGTATACCGGTTCTAGCTGAAA 59.580 40.000 15.04 0.00 36.30 2.69
698 7633 9.109393 GGTTCTAGCTGAAATTGTATTATCACA 57.891 33.333 0.00 0.00 36.30 3.58
703 7638 8.162878 AGCTGAAATTGTATTATCACAGGATG 57.837 34.615 0.00 0.00 46.00 3.51
966 7932 1.401278 GGCTAGCTACCGCGTTATCTC 60.401 57.143 15.72 0.00 42.32 2.75
967 7933 1.536331 GCTAGCTACCGCGTTATCTCT 59.464 52.381 7.70 0.00 42.32 3.10
970 7936 2.810650 AGCTACCGCGTTATCTCTTTG 58.189 47.619 4.92 0.00 42.32 2.77
977 7962 1.369625 CGTTATCTCTTTGCCCGCTT 58.630 50.000 0.00 0.00 0.00 4.68
979 7964 2.633488 GTTATCTCTTTGCCCGCTTCT 58.367 47.619 0.00 0.00 0.00 2.85
981 7966 0.107459 ATCTCTTTGCCCGCTTCTCC 60.107 55.000 0.00 0.00 0.00 3.71
985 7970 2.190488 CTTTGCCCGCTTCTCCTCCT 62.190 60.000 0.00 0.00 0.00 3.69
994 7979 1.468395 GCTTCTCCTCCTCGTTTCTCG 60.468 57.143 0.00 0.00 41.41 4.04
1068 8053 3.785982 TCGCAGAGCCTGTACCAA 58.214 55.556 4.45 0.00 33.43 3.67
1069 8054 1.292223 TCGCAGAGCCTGTACCAAC 59.708 57.895 4.45 0.00 33.43 3.77
1315 8352 1.444895 CACTGGCGCAATTTCCTGC 60.445 57.895 10.83 0.00 39.04 4.85
1335 8372 1.003839 TGGTTCATGTGACTCCGCC 60.004 57.895 0.00 0.00 0.00 6.13
1402 8443 4.154918 GGACAACAGTCATGGACTTTCATC 59.845 45.833 0.00 0.00 41.37 2.92
1427 8468 1.983605 CGTGTTGTAGAGTAAGCACCG 59.016 52.381 0.00 0.00 0.00 4.94
1475 8521 6.875726 TCAACTGATTCAGTATTTCACTCTGG 59.124 38.462 19.27 0.00 44.62 3.86
1504 8550 5.476599 AGCATTTGTCTTGGCTGTAACATAA 59.523 36.000 0.00 0.00 34.83 1.90
1522 8568 2.997485 AACGAATTGCTTCAAGCTCC 57.003 45.000 11.57 0.00 42.97 4.70
1536 8582 0.806868 AGCTCCGTTGTGATGCATTG 59.193 50.000 0.00 0.00 0.00 2.82
1721 9266 1.130561 GCCAAGTTTAACCAGCTAGCG 59.869 52.381 9.55 4.28 0.00 4.26
1742 9287 3.012518 GGACCAGATTGACAAGGATGTG 58.987 50.000 0.00 0.00 40.74 3.21
1787 9332 5.222079 TCTCACCTTGCAAAGTATGTACA 57.778 39.130 0.00 0.00 44.25 2.90
1788 9333 5.804639 TCTCACCTTGCAAAGTATGTACAT 58.195 37.500 13.93 13.93 44.25 2.29
1853 9398 6.223120 GTTCTTATTGTTTTGCCCATTGACT 58.777 36.000 0.00 0.00 0.00 3.41
1856 9401 8.133024 TCTTATTGTTTTGCCCATTGACTTAT 57.867 30.769 0.00 0.00 0.00 1.73
1969 9514 3.496884 TCACGTGAGTTATTTCTTGTGCC 59.503 43.478 15.76 0.00 46.40 5.01
1974 9519 5.505654 CGTGAGTTATTTCTTGTGCCTGTTT 60.506 40.000 0.00 0.00 0.00 2.83
1982 9527 5.437289 TTCTTGTGCCTGTTTTAGTGATG 57.563 39.130 0.00 0.00 0.00 3.07
2107 9664 4.081697 CCGGCAGGTGGAAGATTAAAAATT 60.082 41.667 0.00 0.00 0.00 1.82
2113 9670 9.305925 GCAGGTGGAAGATTAAAAATTAATCTG 57.694 33.333 20.29 11.39 41.80 2.90
2145 9702 7.980062 TGTTGCTTTTATTCGCATAATCTGTA 58.020 30.769 0.00 0.00 35.85 2.74
2169 9726 6.974932 AGATGTACAAACTAATCAGCTGTG 57.025 37.500 14.67 5.09 0.00 3.66
2183 9740 2.095364 CAGCTGTGTGATCTTTTCTGGC 60.095 50.000 5.25 0.00 0.00 4.85
2192 9749 5.104360 TGTGATCTTTTCTGGCCTAGCTATT 60.104 40.000 3.32 0.00 0.00 1.73
2193 9750 5.238214 GTGATCTTTTCTGGCCTAGCTATTG 59.762 44.000 3.32 0.00 0.00 1.90
2195 9752 2.348411 TTTCTGGCCTAGCTATTGCC 57.652 50.000 21.75 21.75 45.56 4.52
2204 9761 5.745227 GGCCTAGCTATTGCCATTCTATTA 58.255 41.667 22.98 0.00 44.70 0.98
2206 9763 6.659242 GGCCTAGCTATTGCCATTCTATTAAA 59.341 38.462 22.98 0.00 44.70 1.52
2259 9816 4.344102 TGCATCGGGTAATTAGAGCTAGTT 59.656 41.667 0.00 0.00 0.00 2.24
2285 9842 1.129251 CAACTGGCTCTGCAATGTACG 59.871 52.381 0.00 0.00 0.00 3.67
2292 9849 3.871594 GGCTCTGCAATGTACGTTATTCT 59.128 43.478 0.00 0.00 0.00 2.40
2297 9854 7.060600 TCTGCAATGTACGTTATTCTTTCTG 57.939 36.000 0.00 0.00 0.00 3.02
2335 9892 5.167121 CGATCTGATCTTAGCCCTATGTTG 58.833 45.833 15.16 0.00 0.00 3.33
2338 9895 7.523873 CGATCTGATCTTAGCCCTATGTTGTAA 60.524 40.741 15.16 0.00 0.00 2.41
2340 9897 7.671302 TCTGATCTTAGCCCTATGTTGTAATC 58.329 38.462 0.00 0.00 0.00 1.75
2341 9898 7.510685 TCTGATCTTAGCCCTATGTTGTAATCT 59.489 37.037 0.00 0.00 0.00 2.40
2342 9899 7.671302 TGATCTTAGCCCTATGTTGTAATCTC 58.329 38.462 0.00 0.00 0.00 2.75
2343 9900 7.290014 TGATCTTAGCCCTATGTTGTAATCTCA 59.710 37.037 0.00 0.00 0.00 3.27
2345 9902 8.034313 TCTTAGCCCTATGTTGTAATCTCATT 57.966 34.615 0.00 0.00 0.00 2.57
2381 9941 5.405269 TGATATGGTTATGATTCGTTCTGCG 59.595 40.000 0.00 0.00 43.01 5.18
2382 9942 1.663643 TGGTTATGATTCGTTCTGCGC 59.336 47.619 0.00 0.00 41.07 6.09
2402 9977 5.133264 GCGCTGTATCACTTTTGATAATCG 58.867 41.667 0.00 2.75 44.67 3.34
2512 10087 1.947678 GCAGGTGTCCCAGTTGATGAG 60.948 57.143 0.00 0.00 0.00 2.90
2519 10094 4.021016 GTGTCCCAGTTGATGAGAGTAACT 60.021 45.833 0.00 0.00 35.18 2.24
2566 10141 9.740239 TGTCTTATATCGACTAACAAATACACC 57.260 33.333 0.00 0.00 32.70 4.16
2685 10260 5.705609 AGCACTTTTGGGTATGTAAACTG 57.294 39.130 0.00 0.00 0.00 3.16
2707 10282 8.574196 ACTGTACATTGTTTTGACATTAAAGC 57.426 30.769 0.00 0.00 0.00 3.51
2711 10286 5.402270 ACATTGTTTTGACATTAAAGCGAGC 59.598 36.000 0.00 0.00 0.00 5.03
2724 10299 3.471495 AAGCGAGCGAAGGTTATTTTG 57.529 42.857 0.00 0.00 39.88 2.44
2734 10309 7.708998 AGCGAAGGTTATTTTGTTTTACTTGA 58.291 30.769 0.00 0.00 27.67 3.02
2972 10548 2.695666 ACGAGGAGCAGCATATTGTACT 59.304 45.455 0.00 0.00 0.00 2.73
2978 10554 4.310769 GAGCAGCATATTGTACTGGTAGG 58.689 47.826 0.00 0.00 41.87 3.18
2994 10570 3.246203 TGGTAGGGGAGAGGTATGTGAAA 60.246 47.826 0.00 0.00 0.00 2.69
2995 10571 3.388350 GGTAGGGGAGAGGTATGTGAAAG 59.612 52.174 0.00 0.00 0.00 2.62
2999 10575 3.133183 GGGGAGAGGTATGTGAAAGACTC 59.867 52.174 0.00 0.00 0.00 3.36
3000 10576 4.027437 GGGAGAGGTATGTGAAAGACTCT 58.973 47.826 0.00 0.00 37.96 3.24
3001 10577 4.142049 GGGAGAGGTATGTGAAAGACTCTG 60.142 50.000 0.00 0.00 35.61 3.35
3002 10578 4.464597 GGAGAGGTATGTGAAAGACTCTGT 59.535 45.833 0.00 0.00 35.61 3.41
3003 10579 5.046950 GGAGAGGTATGTGAAAGACTCTGTT 60.047 44.000 0.00 0.00 35.61 3.16
3004 10580 6.031751 AGAGGTATGTGAAAGACTCTGTTC 57.968 41.667 0.00 0.00 34.31 3.18
3005 10581 5.777732 AGAGGTATGTGAAAGACTCTGTTCT 59.222 40.000 0.00 0.00 34.31 3.01
3006 10582 6.948886 AGAGGTATGTGAAAGACTCTGTTCTA 59.051 38.462 0.00 0.00 34.31 2.10
3007 10583 7.122055 AGAGGTATGTGAAAGACTCTGTTCTAG 59.878 40.741 0.00 0.00 34.31 2.43
3008 10584 6.722129 AGGTATGTGAAAGACTCTGTTCTAGT 59.278 38.462 0.00 0.00 0.00 2.57
3009 10585 7.889073 AGGTATGTGAAAGACTCTGTTCTAGTA 59.111 37.037 0.00 0.00 0.00 1.82
3010 10586 8.688151 GGTATGTGAAAGACTCTGTTCTAGTAT 58.312 37.037 0.00 0.00 0.00 2.12
3031 10607 8.773033 AGTATTATTTTCCTTGAATCATGGCT 57.227 30.769 10.03 0.00 0.00 4.75
3032 10608 9.205513 AGTATTATTTTCCTTGAATCATGGCTT 57.794 29.630 10.03 0.00 0.00 4.35
3033 10609 9.468532 GTATTATTTTCCTTGAATCATGGCTTC 57.531 33.333 10.03 0.00 0.00 3.86
3034 10610 7.722949 TTATTTTCCTTGAATCATGGCTTCT 57.277 32.000 10.03 0.00 0.00 2.85
3035 10611 8.821686 TTATTTTCCTTGAATCATGGCTTCTA 57.178 30.769 10.03 3.01 0.00 2.10
3036 10612 7.722949 ATTTTCCTTGAATCATGGCTTCTAA 57.277 32.000 10.03 0.00 0.00 2.10
3037 10613 7.722949 TTTTCCTTGAATCATGGCTTCTAAT 57.277 32.000 10.03 0.00 0.00 1.73
3038 10614 7.722949 TTTCCTTGAATCATGGCTTCTAATT 57.277 32.000 10.03 0.00 0.00 1.40
3039 10615 6.704289 TCCTTGAATCATGGCTTCTAATTG 57.296 37.500 10.03 0.00 0.00 2.32
3040 10616 6.189859 TCCTTGAATCATGGCTTCTAATTGT 58.810 36.000 10.03 0.00 0.00 2.71
3041 10617 7.345691 TCCTTGAATCATGGCTTCTAATTGTA 58.654 34.615 10.03 0.00 0.00 2.41
3042 10618 7.500227 TCCTTGAATCATGGCTTCTAATTGTAG 59.500 37.037 10.03 0.00 0.00 2.74
3043 10619 7.284034 CCTTGAATCATGGCTTCTAATTGTAGT 59.716 37.037 2.07 0.00 0.00 2.73
3044 10620 7.792374 TGAATCATGGCTTCTAATTGTAGTC 57.208 36.000 9.41 0.00 0.00 2.59
3084 10661 0.664761 CTCCATTAAGGCATGTGCGG 59.335 55.000 0.00 0.00 43.26 5.69
3085 10662 0.034574 TCCATTAAGGCATGTGCGGT 60.035 50.000 0.00 0.00 43.26 5.68
3086 10663 0.381801 CCATTAAGGCATGTGCGGTC 59.618 55.000 0.00 0.00 43.26 4.79
3087 10664 0.381801 CATTAAGGCATGTGCGGTCC 59.618 55.000 0.00 0.00 43.26 4.46
3088 10665 0.034574 ATTAAGGCATGTGCGGTCCA 60.035 50.000 0.00 0.00 43.26 4.02
3093 10670 0.458370 GGCATGTGCGGTCCATTTTC 60.458 55.000 0.00 0.00 43.26 2.29
3094 10671 0.458370 GCATGTGCGGTCCATTTTCC 60.458 55.000 0.00 0.00 0.00 3.13
3095 10672 0.173255 CATGTGCGGTCCATTTTCCC 59.827 55.000 0.00 0.00 0.00 3.97
3098 10675 1.001393 TGCGGTCCATTTTCCCCTC 60.001 57.895 0.00 0.00 0.00 4.30
3099 10676 1.001393 GCGGTCCATTTTCCCCTCA 60.001 57.895 0.00 0.00 0.00 3.86
3106 10688 3.507622 GTCCATTTTCCCCTCAAACAGAG 59.492 47.826 0.00 0.00 44.31 3.35
3133 10715 8.970020 ACCAAAATGTGTGTCATTGTATATCAT 58.030 29.630 0.00 0.00 44.85 2.45
3145 10727 8.598924 GTCATTGTATATCATAAGAAGGCATCG 58.401 37.037 0.00 0.00 0.00 3.84
3147 10729 9.322773 CATTGTATATCATAAGAAGGCATCGAT 57.677 33.333 0.00 0.00 0.00 3.59
3157 10744 4.950050 AGAAGGCATCGATACAAAGTAGG 58.050 43.478 0.00 0.00 0.00 3.18
3166 10753 3.621715 CGATACAAAGTAGGAGGCAAACC 59.378 47.826 0.00 0.00 0.00 3.27
3178 10765 4.164030 AGGAGGCAAACCAAAAACTGAAAT 59.836 37.500 0.00 0.00 39.06 2.17
3193 10780 5.972107 ACTGAAATTGATACAAAGCAGCT 57.028 34.783 0.00 0.00 0.00 4.24
3196 10783 7.308435 ACTGAAATTGATACAAAGCAGCTTAC 58.692 34.615 8.45 0.00 0.00 2.34
3197 10784 7.175641 ACTGAAATTGATACAAAGCAGCTTACT 59.824 33.333 8.45 0.00 0.00 2.24
3198 10785 8.560355 TGAAATTGATACAAAGCAGCTTACTA 57.440 30.769 8.45 1.01 0.00 1.82
3200 10787 9.495754 GAAATTGATACAAAGCAGCTTACTAAG 57.504 33.333 8.45 0.00 0.00 2.18
3216 10805 9.181061 AGCTTACTAAGGAACAAAAACAACTAA 57.819 29.630 0.00 0.00 0.00 2.24
3217 10806 9.961265 GCTTACTAAGGAACAAAAACAACTAAT 57.039 29.630 0.00 0.00 0.00 1.73
3223 10812 6.805713 AGGAACAAAAACAACTAATGACAGG 58.194 36.000 0.00 0.00 0.00 4.00
3228 10817 8.702163 ACAAAAACAACTAATGACAGGAAAAG 57.298 30.769 0.00 0.00 0.00 2.27
3229 10818 7.277760 ACAAAAACAACTAATGACAGGAAAAGC 59.722 33.333 0.00 0.00 0.00 3.51
3248 10837 6.819397 AAAGCAAAAAGACTATACAGGGAC 57.181 37.500 0.00 0.00 0.00 4.46
3249 10838 5.499004 AGCAAAAAGACTATACAGGGACA 57.501 39.130 0.00 0.00 0.00 4.02
3266 10905 3.706373 ACCGGAGCGCCTTCACAT 61.706 61.111 9.46 0.00 0.00 3.21
3276 10915 1.180029 GCCTTCACATCTGCCAACAT 58.820 50.000 0.00 0.00 0.00 2.71
3287 10926 3.495331 TCTGCCAACATCCAAAGCTTAA 58.505 40.909 0.00 0.00 0.00 1.85
3289 10928 4.082081 TCTGCCAACATCCAAAGCTTAATG 60.082 41.667 0.00 7.10 0.00 1.90
3290 10929 3.577848 TGCCAACATCCAAAGCTTAATGT 59.422 39.130 13.44 13.44 33.92 2.71
3295 10934 2.122783 TCCAAAGCTTAATGTCCCCG 57.877 50.000 0.00 0.00 0.00 5.73
3297 10936 1.340600 CCAAAGCTTAATGTCCCCGGA 60.341 52.381 0.73 0.00 0.00 5.14
3298 10937 2.017049 CAAAGCTTAATGTCCCCGGAG 58.983 52.381 0.73 0.00 0.00 4.63
3323 10962 4.503123 GGAATCCACCAAAACTTTTCCTGG 60.503 45.833 0.00 0.00 34.95 4.45
3333 10972 1.321474 CTTTTCCTGGAGTTGCTGCA 58.679 50.000 0.00 0.00 0.00 4.41
3362 11001 5.882557 GGGTGATGATTTTCTGTGATACTGT 59.117 40.000 0.00 0.00 0.00 3.55
3379 11018 8.345565 GTGATACTGTCATGAAACTCTTTGTTT 58.654 33.333 0.00 0.00 44.11 2.83
3395 11034 4.944962 TTGTTTCAATCCTGATAGCACG 57.055 40.909 0.00 0.00 0.00 5.34
3396 11035 4.200838 TGTTTCAATCCTGATAGCACGA 57.799 40.909 0.00 0.00 0.00 4.35
3408 11047 1.847328 TAGCACGATCTGGGTCTTCA 58.153 50.000 0.00 0.00 0.00 3.02
3424 11064 6.317893 TGGGTCTTCAAAAAGAACTTCAGTAC 59.682 38.462 3.46 0.00 46.60 2.73
3504 11144 5.612725 AAAACCAGGCCACATTAATATGG 57.387 39.130 8.50 8.50 39.16 2.74
3534 11174 9.255304 GAGTAGATCCATCATTCAGTTTCTTAC 57.745 37.037 0.00 0.00 0.00 2.34
3539 11179 9.383519 GATCCATCATTCAGTTTCTTACAAGTA 57.616 33.333 0.00 0.00 0.00 2.24
3576 11216 5.544176 TCTGGACCAGAAAGAGTGAAGTATT 59.456 40.000 22.30 0.00 37.57 1.89
3578 11218 6.231211 TGGACCAGAAAGAGTGAAGTATTTC 58.769 40.000 0.00 0.00 32.95 2.17
3598 11238 2.241176 TCACCTGAACCCTGTTTCAACT 59.759 45.455 0.00 0.00 35.07 3.16
3607 11247 6.378564 TGAACCCTGTTTCAACTTATTGACAA 59.621 34.615 0.00 0.00 44.66 3.18
3608 11248 6.391227 ACCCTGTTTCAACTTATTGACAAG 57.609 37.500 0.00 0.00 44.66 3.16
3627 11267 7.592938 TGACAAGTGCTTAGATAATTGGTTTG 58.407 34.615 0.00 0.00 0.00 2.93
3636 11276 7.013274 GCTTAGATAATTGGTTTGGCTGATACA 59.987 37.037 0.00 0.00 0.00 2.29
3638 11278 6.426587 AGATAATTGGTTTGGCTGATACACT 58.573 36.000 0.00 0.00 0.00 3.55
3641 11361 8.766994 ATAATTGGTTTGGCTGATACACTATT 57.233 30.769 0.00 0.00 0.00 1.73
3657 11377 2.965147 ACTATTGCAATTGGGCCATACC 59.035 45.455 18.75 0.00 37.93 2.73
3662 11382 1.069049 GCAATTGGGCCATACCACATC 59.931 52.381 7.26 0.00 41.03 3.06
3665 11385 0.033601 TTGGGCCATACCACATCACC 60.034 55.000 7.26 0.00 41.03 4.02
3676 11396 7.138736 CCATACCACATCACCGATTTTTATTC 58.861 38.462 0.00 0.00 0.00 1.75
3678 11398 6.773976 ACCACATCACCGATTTTTATTCAT 57.226 33.333 0.00 0.00 0.00 2.57
3699 11420 1.594331 GGAGTTGCCTTGTTCGACTT 58.406 50.000 0.00 0.00 0.00 3.01
3701 11422 3.135994 GGAGTTGCCTTGTTCGACTTTA 58.864 45.455 0.00 0.00 0.00 1.85
3705 11426 4.819630 AGTTGCCTTGTTCGACTTTATTCA 59.180 37.500 0.00 0.00 0.00 2.57
3736 11457 2.374170 TGACTTTTGTAGAGGGGTTCCC 59.626 50.000 0.00 0.00 45.90 3.97
3749 11470 1.539157 GGTTCCCTTCAGCTTCCAAG 58.461 55.000 0.00 0.00 0.00 3.61
3754 11475 3.424703 TCCCTTCAGCTTCCAAGATTTG 58.575 45.455 0.00 0.00 0.00 2.32
3765 11487 9.211485 CAGCTTCCAAGATTTGTTTTTCATTAT 57.789 29.630 0.00 0.00 0.00 1.28
3796 11643 9.733556 AACTAAACACTGACATGGAAATGTATA 57.266 29.630 0.00 0.00 34.45 1.47
3831 11678 0.036732 TACCTTGCTGCTGAAGTGGG 59.963 55.000 0.00 0.00 0.00 4.61
3836 11683 0.111061 TGCTGCTGAAGTGGGTGATT 59.889 50.000 0.00 0.00 0.00 2.57
3852 11699 9.396022 AGTGGGTGATTATAATCTACAACTTTG 57.604 33.333 22.77 0.00 36.39 2.77
4006 11854 8.532977 TCTTAATTTAAAGTGCATGCTTTTCC 57.467 30.769 20.33 1.64 39.22 3.13
4017 11865 3.922850 GCATGCTTTTCCTAACAAGCTTC 59.077 43.478 11.37 0.00 44.90 3.86
4043 11891 1.320344 TGCAGCGACTCCGGTTAGAT 61.320 55.000 0.00 0.00 44.97 1.98
4053 11901 4.453751 ACTCCGGTTAGATCAGACTAGTC 58.546 47.826 15.41 15.41 0.00 2.59
4065 11913 4.348486 TCAGACTAGTCAAGCTGATCCTT 58.652 43.478 24.44 0.00 35.08 3.36
4094 11942 4.009675 TGCTCAAGGAGATTACGCAAAAT 58.990 39.130 0.00 0.00 0.00 1.82
4097 11945 3.694072 TCAAGGAGATTACGCAAAATGGG 59.306 43.478 0.00 0.00 36.28 4.00
4138 11986 7.726216 TGTGTAAATGATCTAGGTATGGAGTG 58.274 38.462 0.00 0.00 0.00 3.51
4139 11987 7.344612 TGTGTAAATGATCTAGGTATGGAGTGT 59.655 37.037 0.00 0.00 0.00 3.55
4147 11995 7.730332 TGATCTAGGTATGGAGTGTGTGATTAT 59.270 37.037 0.00 0.00 0.00 1.28
4154 12002 8.883731 GGTATGGAGTGTGTGATTATAATATGC 58.116 37.037 0.00 0.00 0.00 3.14
4248 12097 4.467438 AGAAATGGTTCATGTTCCCCATTC 59.533 41.667 15.86 12.01 44.74 2.67
4256 12105 5.982890 TCATGTTCCCCATTCTCTTTTTC 57.017 39.130 0.00 0.00 0.00 2.29
4285 12134 0.662619 CAGCTTTTGAGGTGTTGCGA 59.337 50.000 0.00 0.00 33.12 5.10
4312 12161 8.548721 TCACTAAAGAAGTTGAAGAAACGATTC 58.451 33.333 0.00 0.00 44.04 2.52
4324 12173 5.587388 AGAAACGATTCATTGCATCCAAT 57.413 34.783 8.22 0.00 42.26 3.16
4325 12174 6.698008 AGAAACGATTCATTGCATCCAATA 57.302 33.333 8.22 0.00 39.60 1.90
4339 12188 4.042187 GCATCCAATAGGGGAGATTACAGT 59.958 45.833 0.00 0.00 41.08 3.55
4357 12206 3.569701 ACAGTGCTGTTTTTATGTCAGGG 59.430 43.478 0.00 0.00 41.83 4.45
4368 12218 1.501582 ATGTCAGGGAGGTAAGAGGC 58.498 55.000 0.00 0.00 0.00 4.70
4371 12221 0.343372 TCAGGGAGGTAAGAGGCCAT 59.657 55.000 5.01 0.00 0.00 4.40
4380 12230 5.780793 GGAGGTAAGAGGCCATATTCTCTTA 59.219 44.000 5.01 5.59 45.33 2.10
4389 12239 7.293535 AGAGGCCATATTCTCTTACCAAACTAT 59.706 37.037 5.01 0.00 37.06 2.12
4390 12240 7.227156 AGGCCATATTCTCTTACCAAACTATG 58.773 38.462 5.01 0.00 0.00 2.23
4391 12241 7.072454 AGGCCATATTCTCTTACCAAACTATGA 59.928 37.037 5.01 0.00 0.00 2.15
4392 12242 7.719633 GGCCATATTCTCTTACCAAACTATGAA 59.280 37.037 0.00 0.00 0.00 2.57
4393 12243 8.778358 GCCATATTCTCTTACCAAACTATGAAG 58.222 37.037 0.00 0.00 0.00 3.02
4399 12249 8.777865 TCTCTTACCAAACTATGAAGAACATG 57.222 34.615 0.00 0.00 39.77 3.21
4400 12250 7.824289 TCTCTTACCAAACTATGAAGAACATGG 59.176 37.037 0.00 0.00 42.07 3.66
4415 12265 7.876068 TGAAGAACATGGTTATTCGAAAGTAGT 59.124 33.333 0.00 0.00 0.00 2.73
4427 12277 9.661187 TTATTCGAAAGTAGTCTTATTCTAGCG 57.339 33.333 0.00 0.00 33.09 4.26
4432 12282 8.732227 CGAAAGTAGTCTTATTCTAGCGTTAAC 58.268 37.037 0.00 0.00 33.09 2.01
4446 12296 7.375834 TCTAGCGTTAACCACCATCATATTAG 58.624 38.462 0.00 0.00 0.00 1.73
4449 12299 5.178809 GCGTTAACCACCATCATATTAGTCC 59.821 44.000 0.00 0.00 0.00 3.85
4450 12300 6.522054 CGTTAACCACCATCATATTAGTCCT 58.478 40.000 0.00 0.00 0.00 3.85
4456 12309 6.268847 ACCACCATCATATTAGTCCTCTCTTC 59.731 42.308 0.00 0.00 0.00 2.87
4462 12315 6.310941 TCATATTAGTCCTCTCTTCCCTCAG 58.689 44.000 0.00 0.00 0.00 3.35
4473 12326 6.995091 CCTCTCTTCCCTCAGTTTATATTTGG 59.005 42.308 0.00 0.00 0.00 3.28
4479 12332 5.193728 TCCCTCAGTTTATATTTGGCTTCCT 59.806 40.000 0.00 0.00 0.00 3.36
4486 12339 7.970614 CAGTTTATATTTGGCTTCCTTCAGAAC 59.029 37.037 0.00 0.00 0.00 3.01
4491 12344 5.705609 TTTGGCTTCCTTCAGAACATTAC 57.294 39.130 0.00 0.00 0.00 1.89
4494 12347 3.440522 GGCTTCCTTCAGAACATTACACC 59.559 47.826 0.00 0.00 0.00 4.16
4500 12353 3.788227 TCAGAACATTACACCTTGCCT 57.212 42.857 0.00 0.00 0.00 4.75
4502 12355 5.235850 TCAGAACATTACACCTTGCCTTA 57.764 39.130 0.00 0.00 0.00 2.69
4503 12356 5.001232 TCAGAACATTACACCTTGCCTTAC 58.999 41.667 0.00 0.00 0.00 2.34
4514 12367 0.323629 TTGCCTTACTCTTGGGTCGG 59.676 55.000 0.00 0.00 0.00 4.79
4520 12373 3.130693 CCTTACTCTTGGGTCGGTTAGAG 59.869 52.174 0.00 0.00 39.93 2.43
4530 12383 3.368220 GGGTCGGTTAGAGGAGTCTTTTC 60.368 52.174 0.00 0.00 33.84 2.29
4531 12384 3.257624 GGTCGGTTAGAGGAGTCTTTTCA 59.742 47.826 0.00 0.00 33.84 2.69
4532 12385 4.487019 GTCGGTTAGAGGAGTCTTTTCAG 58.513 47.826 0.00 0.00 33.84 3.02
4541 12394 2.354604 GGAGTCTTTTCAGGAGCTCCAG 60.355 54.545 33.90 26.54 41.39 3.86
4542 12395 2.301583 GAGTCTTTTCAGGAGCTCCAGT 59.698 50.000 33.90 14.53 38.89 4.00
4545 12398 3.997681 GTCTTTTCAGGAGCTCCAGTTAC 59.002 47.826 33.90 17.49 38.89 2.50
4552 12406 4.464951 TCAGGAGCTCCAGTTACGAAATTA 59.535 41.667 33.90 3.61 38.89 1.40
4557 12411 4.811557 AGCTCCAGTTACGAAATTATGCTC 59.188 41.667 0.00 0.00 0.00 4.26
4576 12430 5.703876 TGCTCTGTAGTTAGCATCGATATG 58.296 41.667 0.00 0.00 43.56 1.78
4577 12431 5.098893 GCTCTGTAGTTAGCATCGATATGG 58.901 45.833 0.00 0.00 38.63 2.74
4578 12432 5.106118 GCTCTGTAGTTAGCATCGATATGGA 60.106 44.000 0.00 0.00 38.63 3.41
4579 12433 6.570571 GCTCTGTAGTTAGCATCGATATGGAA 60.571 42.308 0.00 0.00 38.63 3.53
4580 12434 6.914259 TCTGTAGTTAGCATCGATATGGAAG 58.086 40.000 0.00 0.00 33.38 3.46
4581 12435 5.470368 TGTAGTTAGCATCGATATGGAAGC 58.530 41.667 6.82 6.82 33.38 3.86
4588 12442 4.065088 GCATCGATATGGAAGCACCTAAA 58.935 43.478 9.68 0.00 39.86 1.85
4589 12443 4.083802 GCATCGATATGGAAGCACCTAAAC 60.084 45.833 9.68 0.00 39.86 2.01
4590 12444 4.746535 TCGATATGGAAGCACCTAAACA 57.253 40.909 1.91 0.00 39.86 2.83
4593 12447 4.271049 CGATATGGAAGCACCTAAACACTG 59.729 45.833 1.91 0.00 39.86 3.66
4594 12448 3.508845 ATGGAAGCACCTAAACACTGT 57.491 42.857 1.91 0.00 39.86 3.55
4595 12449 2.846193 TGGAAGCACCTAAACACTGTC 58.154 47.619 1.91 0.00 39.86 3.51
4599 12453 4.278419 GGAAGCACCTAAACACTGTCATTT 59.722 41.667 0.00 0.00 35.41 2.32
4610 12464 5.428496 ACACTGTCATTTGTCATTCTGTG 57.572 39.130 0.00 0.00 0.00 3.66
4613 12467 6.263842 ACACTGTCATTTGTCATTCTGTGAAT 59.736 34.615 0.00 0.00 38.90 2.57
4616 12470 7.864379 ACTGTCATTTGTCATTCTGTGAATTTC 59.136 33.333 0.00 0.00 38.90 2.17
4617 12471 7.714703 TGTCATTTGTCATTCTGTGAATTTCA 58.285 30.769 0.00 0.00 38.90 2.69
4618 12472 7.863877 TGTCATTTGTCATTCTGTGAATTTCAG 59.136 33.333 0.00 5.56 38.90 3.02
4619 12473 7.864379 GTCATTTGTCATTCTGTGAATTTCAGT 59.136 33.333 0.00 0.00 38.90 3.41
4620 12474 9.065798 TCATTTGTCATTCTGTGAATTTCAGTA 57.934 29.630 0.00 3.52 38.90 2.74
4621 12475 9.338291 CATTTGTCATTCTGTGAATTTCAGTAG 57.662 33.333 0.00 2.15 38.90 2.57
4623 12477 6.768483 TGTCATTCTGTGAATTTCAGTAGGA 58.232 36.000 0.00 0.00 38.90 2.94
4658 12539 4.574674 TTAAGATGTGACAATCAGGGCT 57.425 40.909 0.00 0.00 0.00 5.19
4663 12544 5.862845 AGATGTGACAATCAGGGCTAATAG 58.137 41.667 0.00 0.00 0.00 1.73
4681 12778 1.180029 AGACCCTCATGTGCATTTGC 58.820 50.000 0.00 0.00 42.50 3.68
4699 12796 2.411904 TGCAATTTGGAACCGCATTTC 58.588 42.857 0.00 0.00 0.00 2.17
4700 12797 2.224137 TGCAATTTGGAACCGCATTTCA 60.224 40.909 0.00 0.00 0.00 2.69
4704 12801 5.410067 CAATTTGGAACCGCATTTCATAGT 58.590 37.500 0.00 0.00 0.00 2.12
4707 12804 3.006940 TGGAACCGCATTTCATAGTCAC 58.993 45.455 0.00 0.00 0.00 3.67
4715 12812 7.045416 ACCGCATTTCATAGTCACACTATTTA 58.955 34.615 0.00 0.00 39.26 1.40
4718 12815 9.373750 CGCATTTCATAGTCACACTATTTAATG 57.626 33.333 15.43 15.43 39.26 1.90
4756 12853 1.337703 GTTTCATGCAGTGGAAGCACA 59.662 47.619 0.00 0.00 45.95 4.57
4838 12935 4.218417 AGGATGTTTTTGTGTCAGGTATGC 59.782 41.667 0.00 0.00 0.00 3.14
4884 12981 6.838198 TTATGTTTGTCATCTATACACGGC 57.162 37.500 0.00 0.00 37.91 5.68
4898 12995 1.599797 ACGGCCAAAACGCTTAGCT 60.600 52.632 2.24 0.00 34.00 3.32
4906 13003 3.568538 CAAAACGCTTAGCTGAATTGCT 58.431 40.909 1.76 0.00 46.11 3.91
4907 13004 3.477899 AAACGCTTAGCTGAATTGCTC 57.522 42.857 1.76 0.00 42.97 4.26
4932 13030 4.826733 ACACATGACAAAACTGGATTGCTA 59.173 37.500 0.00 0.00 0.00 3.49
4941 13039 6.772716 ACAAAACTGGATTGCTAATATCCGAT 59.227 34.615 0.00 0.00 43.72 4.18
4952 13050 7.962964 TGCTAATATCCGATTAGACAAAAGG 57.037 36.000 8.21 0.00 34.43 3.11
4953 13051 7.732025 TGCTAATATCCGATTAGACAAAAGGA 58.268 34.615 8.21 0.00 34.43 3.36
4961 13059 6.872020 TCCGATTAGACAAAAGGAGTGTTAAG 59.128 38.462 0.00 0.00 0.00 1.85
4995 13096 6.919721 TGGAACCTGTATGCTAATTTTGAAC 58.080 36.000 0.00 0.00 0.00 3.18
4999 13100 6.016555 ACCTGTATGCTAATTTTGAACCCTT 58.983 36.000 0.00 0.00 0.00 3.95
5035 13136 1.080434 GGCTCGCTTTCTCACTCGT 60.080 57.895 0.00 0.00 0.00 4.18
5108 13209 4.754114 GCAAAGAAGATTCACTGTCAGAGT 59.246 41.667 6.91 0.00 34.02 3.24
5120 13221 0.676184 GTCAGAGTCAGCACCAGTCA 59.324 55.000 0.00 0.00 0.00 3.41
5171 13272 1.064758 TCTCAGTTTTGTGGCTGTGGT 60.065 47.619 0.00 0.00 34.57 4.16
5316 13417 1.307097 CTAACTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
5318 13419 0.679321 AACTACTCCCTCCGTCCGAC 60.679 60.000 0.00 0.00 0.00 4.79
5334 13448 1.831736 CCGACAATGGTCTTAGGGAGT 59.168 52.381 0.00 0.00 42.05 3.85
5335 13449 3.028850 CCGACAATGGTCTTAGGGAGTA 58.971 50.000 0.00 0.00 42.05 2.59
5409 13524 3.063510 TCCAGATCACTTGGCAAGAAG 57.936 47.619 32.50 22.71 0.00 2.85
5412 13527 3.558746 CCAGATCACTTGGCAAGAAGAGT 60.559 47.826 32.50 16.94 0.00 3.24
5413 13528 4.070716 CAGATCACTTGGCAAGAAGAGTT 58.929 43.478 32.50 15.28 0.00 3.01
5459 13577 1.531149 CAGCAGGTTTGGTTCTACGTG 59.469 52.381 0.00 0.00 31.36 4.49
5463 13581 4.221262 AGCAGGTTTGGTTCTACGTGTATA 59.779 41.667 0.00 0.00 33.83 1.47
5467 13585 6.475727 CAGGTTTGGTTCTACGTGTATATGAG 59.524 42.308 0.00 0.00 0.00 2.90
5576 13700 6.831353 TGATCTAGTAGGAAGGAAGAGAACAG 59.169 42.308 0.00 0.00 0.00 3.16
5602 13726 4.000988 TGACGCCCTTGAAATCTAAACTC 58.999 43.478 0.00 0.00 0.00 3.01
5621 13746 2.092882 GGTCGCGGAGAAGAAACGG 61.093 63.158 6.13 0.00 0.00 4.44
5772 13903 1.719378 TCTTCCTCCTCCTCCTTCACT 59.281 52.381 0.00 0.00 0.00 3.41
5894 14025 1.301677 GCGTGCTGAAAGGAGAAGGG 61.302 60.000 0.00 0.00 31.73 3.95
6141 14272 1.074775 AGACAGCGGAATTGGGCAA 59.925 52.632 0.00 0.00 0.00 4.52
6204 14340 2.515901 GGTGGGATCGGGAATGGG 59.484 66.667 0.00 0.00 0.00 4.00
6210 14346 1.621347 GGGATCGGGAATGGGGTTTTT 60.621 52.381 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 4925 2.167861 GGAGTCGATTGCGGACTGC 61.168 63.158 0.00 0.00 46.70 4.40
43 4957 0.107456 CAGATGCCTGCGGGTTATCT 59.893 55.000 21.08 21.08 38.35 1.98
155 6777 1.203162 ACCAACCAAGGGATGATGCAA 60.203 47.619 0.00 0.00 0.00 4.08
316 6938 2.805353 CGTTCCTCGTGACAGGCG 60.805 66.667 0.00 0.00 32.91 5.52
374 6996 3.834799 GGGCTCGACGACCCGAAT 61.835 66.667 16.37 0.00 38.17 3.34
401 7023 0.381089 CGCCTCCGTACTGGTAAGAG 59.619 60.000 4.11 0.23 39.52 2.85
447 7072 4.436998 CTGGCCAGGGTCGTCGTC 62.437 72.222 26.14 0.00 0.00 4.20
473 7098 1.582968 GTCGTAGTGCCACTCGGAA 59.417 57.895 0.00 0.00 0.00 4.30
476 7101 2.181021 GGGTCGTAGTGCCACTCG 59.819 66.667 0.00 5.48 0.00 4.18
488 7113 2.989824 AGGGAGTGTCACGGGTCG 60.990 66.667 0.00 0.00 0.00 4.79
505 7130 0.473694 TTGGAGCAGGAACTCTGGGA 60.474 55.000 0.00 0.00 43.54 4.37
506 7131 0.035630 CTTGGAGCAGGAACTCTGGG 60.036 60.000 0.00 0.00 43.54 4.45
507 7132 0.676151 GCTTGGAGCAGGAACTCTGG 60.676 60.000 0.00 0.00 43.54 3.86
508 7133 0.324285 AGCTTGGAGCAGGAACTCTG 59.676 55.000 2.47 0.00 45.56 3.35
509 7134 0.324285 CAGCTTGGAGCAGGAACTCT 59.676 55.000 2.47 0.00 45.56 3.24
529 7230 3.620427 ATAAACTCCACACCACGCATA 57.380 42.857 0.00 0.00 0.00 3.14
531 7232 3.620427 ATATAAACTCCACACCACGCA 57.380 42.857 0.00 0.00 0.00 5.24
648 7395 9.228949 ACCGGTATACTTCACTACAGAATATAG 57.771 37.037 4.49 0.00 0.00 1.31
662 7418 5.511234 TTCAGCTAGAACCGGTATACTTC 57.489 43.478 8.00 0.00 0.00 3.01
672 7428 9.109393 TGTGATAATACAATTTCAGCTAGAACC 57.891 33.333 0.00 0.00 35.56 3.62
677 7612 9.276590 CATCCTGTGATAATACAATTTCAGCTA 57.723 33.333 0.00 0.00 0.00 3.32
685 7620 8.211030 TCCTCATCATCCTGTGATAATACAAT 57.789 34.615 0.00 0.00 45.76 2.71
698 7633 4.554683 TCTTCACAGATCCTCATCATCCT 58.445 43.478 0.00 0.00 0.00 3.24
699 7634 4.344679 ACTCTTCACAGATCCTCATCATCC 59.655 45.833 0.00 0.00 0.00 3.51
703 7638 5.728471 TCAAACTCTTCACAGATCCTCATC 58.272 41.667 0.00 0.00 0.00 2.92
706 7641 4.803088 CGATCAAACTCTTCACAGATCCTC 59.197 45.833 0.00 0.00 30.75 3.71
774 7732 1.753073 CAGGACAAAATGGCATCTCCC 59.247 52.381 0.00 0.00 0.00 4.30
907 7873 4.090057 GCGACGGGTTTGAGCAGC 62.090 66.667 0.00 0.00 0.00 5.25
935 7901 1.185618 TAGCTAGCCGGCCACTATGG 61.186 60.000 26.15 7.31 41.55 2.74
936 7902 0.038159 GTAGCTAGCCGGCCACTATG 60.038 60.000 26.15 8.20 0.00 2.23
937 7903 1.186267 GGTAGCTAGCCGGCCACTAT 61.186 60.000 26.15 6.59 0.00 2.12
938 7904 1.831286 GGTAGCTAGCCGGCCACTA 60.831 63.158 26.15 19.34 0.00 2.74
958 7924 1.327764 GAAGCGGGCAAAGAGATAACG 59.672 52.381 0.00 0.00 0.00 3.18
966 7932 1.746991 GGAGGAGAAGCGGGCAAAG 60.747 63.158 0.00 0.00 0.00 2.77
967 7933 2.185310 GAGGAGGAGAAGCGGGCAAA 62.185 60.000 0.00 0.00 0.00 3.68
970 7936 4.214327 CGAGGAGGAGAAGCGGGC 62.214 72.222 0.00 0.00 0.00 6.13
977 7962 1.313812 GCCGAGAAACGAGGAGGAGA 61.314 60.000 0.00 0.00 45.77 3.71
979 7964 1.304217 AGCCGAGAAACGAGGAGGA 60.304 57.895 0.00 0.00 45.77 3.71
981 7966 1.139947 GGAGCCGAGAAACGAGGAG 59.860 63.158 0.00 0.00 45.77 3.69
1157 8192 3.695606 GTCGGCTCCTGGTGCTGA 61.696 66.667 24.29 24.29 42.74 4.26
1209 8244 3.274288 CTCGATTTTCTTCCTCCCTTGG 58.726 50.000 0.00 0.00 0.00 3.61
1315 8352 1.626654 GCGGAGTCACATGAACCACG 61.627 60.000 0.00 6.19 0.00 4.94
1367 8405 8.906867 CCATGACTGTTGTCCAGAATTATTTAT 58.093 33.333 0.00 0.00 44.49 1.40
1402 8443 4.617645 GTGCTTACTCTACAACACGAAGAG 59.382 45.833 0.00 0.00 42.04 2.85
1427 8468 9.764363 TTGATACCATACAACTATGATGAACTC 57.236 33.333 0.00 0.00 32.66 3.01
1475 8521 1.615392 AGCCAAGACAAATGCTGTTCC 59.385 47.619 0.00 0.00 38.84 3.62
1504 8550 0.798776 CGGAGCTTGAAGCAATTCGT 59.201 50.000 20.45 0.00 45.56 3.85
1522 8568 3.641648 AGGAAAACAATGCATCACAACG 58.358 40.909 0.00 0.00 0.00 4.10
1536 8582 5.154222 GCAGTATGTTACAGCAAGGAAAAC 58.846 41.667 0.00 0.00 40.44 2.43
1560 8606 2.749280 TATGGCAGGCAGATATCGTG 57.251 50.000 1.89 0.00 0.00 4.35
1721 9266 3.012518 CACATCCTTGTCAATCTGGTCC 58.987 50.000 0.00 0.00 32.34 4.46
1742 9287 0.746923 GGTTGAGCCGTGTAATCCCC 60.747 60.000 0.00 0.00 0.00 4.81
1787 9332 8.246180 CCTTGCTTATCAGAAACATAACAACAT 58.754 33.333 0.00 0.00 0.00 2.71
1788 9333 7.309133 CCCTTGCTTATCAGAAACATAACAACA 60.309 37.037 0.00 0.00 0.00 3.33
1856 9401 9.204337 TCTACAAGGTAAAATGCTATACAGGTA 57.796 33.333 0.00 0.00 0.00 3.08
1969 9514 5.868043 TCATGCAGACATCACTAAAACAG 57.132 39.130 0.00 0.00 32.87 3.16
1974 9519 5.122711 CACATGTTCATGCAGACATCACTAA 59.877 40.000 12.00 0.00 32.87 2.24
1982 9527 3.366679 CCTTTCCACATGTTCATGCAGAC 60.367 47.826 12.00 0.00 0.00 3.51
2038 9595 9.872684 ATTAATCTTCCATATCACAACTCCATT 57.127 29.630 0.00 0.00 0.00 3.16
2074 9631 2.316586 ACCTGCCGGATTTCCCCAT 61.317 57.895 5.05 0.00 0.00 4.00
2075 9632 2.938798 ACCTGCCGGATTTCCCCA 60.939 61.111 5.05 0.00 0.00 4.96
2079 9636 0.035439 TCTTCCACCTGCCGGATTTC 60.035 55.000 5.05 0.00 30.99 2.17
2083 9640 1.281419 TTAATCTTCCACCTGCCGGA 58.719 50.000 5.05 0.00 0.00 5.14
2086 9643 8.478066 AGATTAATTTTTAATCTTCCACCTGCC 58.522 33.333 13.99 0.00 40.29 4.85
2113 9670 6.106877 TGCGAATAAAAGCAACATCTCTAC 57.893 37.500 0.00 0.00 40.78 2.59
2124 9681 9.322776 CATCTTACAGATTATGCGAATAAAAGC 57.677 33.333 0.00 0.00 31.32 3.51
2145 9702 6.936900 ACACAGCTGATTAGTTTGTACATCTT 59.063 34.615 23.35 0.00 0.00 2.40
2154 9711 7.446625 AGAAAAGATCACACAGCTGATTAGTTT 59.553 33.333 23.35 9.52 30.62 2.66
2159 9716 4.458295 CCAGAAAAGATCACACAGCTGATT 59.542 41.667 23.35 2.92 30.62 2.57
2169 9726 3.274095 AGCTAGGCCAGAAAAGATCAC 57.726 47.619 5.01 0.00 0.00 3.06
2204 9761 8.566109 ACTTAGGGGGAAACTGACATATTATTT 58.434 33.333 0.00 0.00 0.00 1.40
2206 9763 7.707467 ACTTAGGGGGAAACTGACATATTAT 57.293 36.000 0.00 0.00 0.00 1.28
2259 9816 5.009631 ACATTGCAGAGCCAGTTGTTTATA 58.990 37.500 0.00 0.00 0.00 0.98
2268 9825 1.442769 AACGTACATTGCAGAGCCAG 58.557 50.000 0.00 0.00 0.00 4.85
2312 9869 5.167121 CAACATAGGGCTAAGATCAGATCG 58.833 45.833 4.67 0.00 0.00 3.69
2338 9895 9.750783 CCATATCAATAAGGAAGGAAATGAGAT 57.249 33.333 0.00 0.00 0.00 2.75
2340 9897 8.930846 ACCATATCAATAAGGAAGGAAATGAG 57.069 34.615 0.00 0.00 0.00 2.90
2540 10115 9.740239 GGTGTATTTGTTAGTCGATATAAGACA 57.260 33.333 11.83 0.00 40.84 3.41
2541 10116 9.962783 AGGTGTATTTGTTAGTCGATATAAGAC 57.037 33.333 0.00 3.34 38.81 3.01
2608 10183 1.142262 TGCCCTGATGATCTGTGGATG 59.858 52.381 9.75 0.00 31.46 3.51
2611 10186 0.545171 AGTGCCCTGATGATCTGTGG 59.455 55.000 0.00 0.00 0.00 4.17
2685 10260 7.409343 GCTCGCTTTAATGTCAAAACAATGTAC 60.409 37.037 0.00 0.00 39.30 2.90
2707 10282 6.368213 AGTAAAACAAAATAACCTTCGCTCG 58.632 36.000 0.00 0.00 0.00 5.03
2756 10332 7.927048 ACACTTCAACAAGGACAATAGTAAAC 58.073 34.615 0.00 0.00 33.37 2.01
2763 10339 7.450074 TGTATCTACACTTCAACAAGGACAAT 58.550 34.615 0.00 0.00 33.37 2.71
2789 10365 7.280557 ACCAGTTGGGACCTTCTTATCAAGG 62.281 48.000 2.79 0.00 43.78 3.61
2972 10548 1.934480 TCACATACCTCTCCCCTACCA 59.066 52.381 0.00 0.00 0.00 3.25
2978 10554 4.027437 AGAGTCTTTCACATACCTCTCCC 58.973 47.826 0.00 0.00 0.00 4.30
3005 10581 9.866655 AGCCATGATTCAAGGAAAATAATACTA 57.133 29.630 12.02 0.00 0.00 1.82
3006 10582 8.773033 AGCCATGATTCAAGGAAAATAATACT 57.227 30.769 12.02 0.00 0.00 2.12
3007 10583 9.468532 GAAGCCATGATTCAAGGAAAATAATAC 57.531 33.333 12.02 0.00 0.00 1.89
3008 10584 9.425248 AGAAGCCATGATTCAAGGAAAATAATA 57.575 29.630 12.02 0.00 29.60 0.98
3009 10585 8.315220 AGAAGCCATGATTCAAGGAAAATAAT 57.685 30.769 12.02 0.00 29.60 1.28
3010 10586 7.722949 AGAAGCCATGATTCAAGGAAAATAA 57.277 32.000 12.02 0.00 29.60 1.40
3011 10587 8.821686 TTAGAAGCCATGATTCAAGGAAAATA 57.178 30.769 12.02 0.00 29.60 1.40
3012 10588 7.722949 TTAGAAGCCATGATTCAAGGAAAAT 57.277 32.000 12.02 0.00 29.60 1.82
3013 10589 7.722949 ATTAGAAGCCATGATTCAAGGAAAA 57.277 32.000 12.02 0.00 29.60 2.29
3014 10590 7.178983 ACAATTAGAAGCCATGATTCAAGGAAA 59.821 33.333 12.02 0.00 29.60 3.13
3015 10591 6.664816 ACAATTAGAAGCCATGATTCAAGGAA 59.335 34.615 12.02 0.00 29.60 3.36
3016 10592 6.189859 ACAATTAGAAGCCATGATTCAAGGA 58.810 36.000 12.02 0.00 29.60 3.36
3017 10593 6.461110 ACAATTAGAAGCCATGATTCAAGG 57.539 37.500 3.51 3.51 29.60 3.61
3018 10594 8.218338 ACTACAATTAGAAGCCATGATTCAAG 57.782 34.615 11.66 0.00 29.60 3.02
3019 10595 7.283127 GGACTACAATTAGAAGCCATGATTCAA 59.717 37.037 11.66 5.98 29.60 2.69
3020 10596 6.767902 GGACTACAATTAGAAGCCATGATTCA 59.232 38.462 11.66 0.00 29.60 2.57
3021 10597 6.995091 AGGACTACAATTAGAAGCCATGATTC 59.005 38.462 0.00 0.00 0.00 2.52
3022 10598 6.904626 AGGACTACAATTAGAAGCCATGATT 58.095 36.000 0.00 0.00 0.00 2.57
3023 10599 6.506538 AGGACTACAATTAGAAGCCATGAT 57.493 37.500 0.00 0.00 0.00 2.45
3024 10600 5.957771 AGGACTACAATTAGAAGCCATGA 57.042 39.130 0.00 0.00 0.00 3.07
3025 10601 5.529060 GGAAGGACTACAATTAGAAGCCATG 59.471 44.000 0.00 0.00 0.00 3.66
3026 10602 5.398012 GGGAAGGACTACAATTAGAAGCCAT 60.398 44.000 0.00 0.00 0.00 4.40
3027 10603 4.080526 GGGAAGGACTACAATTAGAAGCCA 60.081 45.833 0.00 0.00 0.00 4.75
3028 10604 4.080526 TGGGAAGGACTACAATTAGAAGCC 60.081 45.833 0.00 0.00 0.00 4.35
3029 10605 5.099042 TGGGAAGGACTACAATTAGAAGC 57.901 43.478 0.00 0.00 0.00 3.86
3030 10606 6.070767 TCACTGGGAAGGACTACAATTAGAAG 60.071 42.308 0.00 0.00 0.00 2.85
3031 10607 5.783360 TCACTGGGAAGGACTACAATTAGAA 59.217 40.000 0.00 0.00 0.00 2.10
3032 10608 5.338632 TCACTGGGAAGGACTACAATTAGA 58.661 41.667 0.00 0.00 0.00 2.10
3033 10609 5.677319 TCACTGGGAAGGACTACAATTAG 57.323 43.478 0.00 0.00 0.00 1.73
3034 10610 6.636454 ATTCACTGGGAAGGACTACAATTA 57.364 37.500 0.00 0.00 39.30 1.40
3035 10611 4.993705 TTCACTGGGAAGGACTACAATT 57.006 40.909 0.00 0.00 0.00 2.32
3036 10612 6.183361 GGATATTCACTGGGAAGGACTACAAT 60.183 42.308 0.00 0.00 39.30 2.71
3037 10613 5.130477 GGATATTCACTGGGAAGGACTACAA 59.870 44.000 0.00 0.00 39.30 2.41
3038 10614 4.654262 GGATATTCACTGGGAAGGACTACA 59.346 45.833 0.00 0.00 39.30 2.74
3039 10615 4.040584 GGGATATTCACTGGGAAGGACTAC 59.959 50.000 0.00 0.00 39.30 2.73
3040 10616 4.077982 AGGGATATTCACTGGGAAGGACTA 60.078 45.833 0.00 0.00 39.30 2.59
3041 10617 3.049344 GGGATATTCACTGGGAAGGACT 58.951 50.000 0.00 0.00 39.30 3.85
3042 10618 3.049344 AGGGATATTCACTGGGAAGGAC 58.951 50.000 0.00 0.00 39.30 3.85
3043 10619 3.438131 AGGGATATTCACTGGGAAGGA 57.562 47.619 0.00 0.00 39.30 3.36
3044 10620 4.235372 AGTAGGGATATTCACTGGGAAGG 58.765 47.826 0.00 0.00 39.30 3.46
3084 10661 3.496331 TCTGTTTGAGGGGAAAATGGAC 58.504 45.455 0.00 0.00 0.00 4.02
3085 10662 3.397618 TCTCTGTTTGAGGGGAAAATGGA 59.602 43.478 0.00 0.00 42.86 3.41
3086 10663 3.507622 GTCTCTGTTTGAGGGGAAAATGG 59.492 47.826 0.00 0.00 42.86 3.16
3087 10664 3.507622 GGTCTCTGTTTGAGGGGAAAATG 59.492 47.826 0.00 0.00 42.86 2.32
3088 10665 3.140144 TGGTCTCTGTTTGAGGGGAAAAT 59.860 43.478 0.00 0.00 42.86 1.82
3093 10670 2.656947 TTTGGTCTCTGTTTGAGGGG 57.343 50.000 0.00 0.00 42.86 4.79
3094 10671 3.891366 ACATTTTGGTCTCTGTTTGAGGG 59.109 43.478 0.00 0.00 42.86 4.30
3095 10672 4.339247 ACACATTTTGGTCTCTGTTTGAGG 59.661 41.667 0.00 0.00 42.86 3.86
3098 10675 4.997565 ACACACATTTTGGTCTCTGTTTG 58.002 39.130 0.00 0.00 0.00 2.93
3099 10676 4.704540 TGACACACATTTTGGTCTCTGTTT 59.295 37.500 0.00 0.00 0.00 2.83
3106 10688 8.458052 TGATATACAATGACACACATTTTGGTC 58.542 33.333 0.00 0.00 45.60 4.02
3115 10697 8.499162 GCCTTCTTATGATATACAATGACACAC 58.501 37.037 0.00 0.00 0.00 3.82
3133 10715 6.322969 TCCTACTTTGTATCGATGCCTTCTTA 59.677 38.462 8.54 0.00 0.00 2.10
3145 10727 4.585879 TGGTTTGCCTCCTACTTTGTATC 58.414 43.478 0.00 0.00 35.27 2.24
3147 10729 4.440826 TTGGTTTGCCTCCTACTTTGTA 57.559 40.909 0.00 0.00 35.27 2.41
3157 10744 5.584251 TCAATTTCAGTTTTTGGTTTGCCTC 59.416 36.000 0.00 0.00 35.27 4.70
3166 10753 7.795272 GCTGCTTTGTATCAATTTCAGTTTTTG 59.205 33.333 0.00 0.00 0.00 2.44
3178 10765 6.707290 TCCTTAGTAAGCTGCTTTGTATCAA 58.293 36.000 21.29 5.92 0.00 2.57
3196 10783 9.450807 CTGTCATTAGTTGTTTTTGTTCCTTAG 57.549 33.333 0.00 0.00 0.00 2.18
3197 10784 8.410141 CCTGTCATTAGTTGTTTTTGTTCCTTA 58.590 33.333 0.00 0.00 0.00 2.69
3198 10785 7.123547 TCCTGTCATTAGTTGTTTTTGTTCCTT 59.876 33.333 0.00 0.00 0.00 3.36
3200 10787 6.801575 TCCTGTCATTAGTTGTTTTTGTTCC 58.198 36.000 0.00 0.00 0.00 3.62
3216 10805 5.859205 AGTCTTTTTGCTTTTCCTGTCAT 57.141 34.783 0.00 0.00 0.00 3.06
3217 10806 6.959639 ATAGTCTTTTTGCTTTTCCTGTCA 57.040 33.333 0.00 0.00 0.00 3.58
3223 10812 7.040686 TGTCCCTGTATAGTCTTTTTGCTTTTC 60.041 37.037 0.00 0.00 0.00 2.29
3228 10817 4.395231 GGTGTCCCTGTATAGTCTTTTTGC 59.605 45.833 0.00 0.00 0.00 3.68
3229 10818 4.630069 CGGTGTCCCTGTATAGTCTTTTTG 59.370 45.833 0.00 0.00 0.00 2.44
3248 10837 3.958147 ATGTGAAGGCGCTCCGGTG 62.958 63.158 7.64 0.00 37.47 4.94
3249 10838 3.665675 GATGTGAAGGCGCTCCGGT 62.666 63.158 7.64 0.00 37.47 5.28
3262 10901 2.673043 GCTTTGGATGTTGGCAGATGTG 60.673 50.000 0.00 0.00 0.00 3.21
3266 10905 1.999648 AAGCTTTGGATGTTGGCAGA 58.000 45.000 0.00 0.00 0.00 4.26
3276 10915 1.340600 CCGGGGACATTAAGCTTTGGA 60.341 52.381 3.20 0.00 0.00 3.53
3287 10926 1.345715 GGATTCCACTCCGGGGACAT 61.346 60.000 9.33 0.46 33.18 3.06
3289 10928 1.993391 TGGATTCCACTCCGGGGAC 60.993 63.158 9.33 0.00 38.21 4.46
3290 10929 2.452584 TGGATTCCACTCCGGGGA 59.547 61.111 9.33 0.00 38.21 4.81
3315 10954 1.774110 TTGCAGCAACTCCAGGAAAA 58.226 45.000 2.83 0.00 0.00 2.29
3323 10962 1.340889 TCACCCAATTTGCAGCAACTC 59.659 47.619 7.54 0.00 0.00 3.01
3333 10972 6.669125 TCACAGAAAATCATCACCCAATTT 57.331 33.333 0.00 0.00 0.00 1.82
3379 11018 3.006217 CCAGATCGTGCTATCAGGATTGA 59.994 47.826 3.50 0.00 44.91 2.57
3395 11034 6.263168 TGAAGTTCTTTTTGAAGACCCAGATC 59.737 38.462 4.17 0.00 35.01 2.75
3396 11035 6.129179 TGAAGTTCTTTTTGAAGACCCAGAT 58.871 36.000 4.17 0.00 35.01 2.90
3408 11047 8.803235 ACTGAAAAAGGTACTGAAGTTCTTTTT 58.197 29.630 22.57 22.57 43.80 1.94
3468 11108 4.141937 GCCTGGTTTTTCTTCTGGAGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
3472 11112 1.889170 GGCCTGGTTTTTCTTCTGGAG 59.111 52.381 0.00 0.00 0.00 3.86
3475 11115 2.031120 TGTGGCCTGGTTTTTCTTCTG 58.969 47.619 3.32 0.00 0.00 3.02
3511 11151 9.605275 CTTGTAAGAAACTGAATGATGGATCTA 57.395 33.333 0.00 0.00 0.00 1.98
3534 11174 8.204160 TGGTCCAGAATATTGTAGATGTACTTG 58.796 37.037 1.30 0.00 0.00 3.16
3539 11179 7.437713 TTCTGGTCCAGAATATTGTAGATGT 57.562 36.000 27.39 0.00 44.27 3.06
3552 11192 3.309296 ACTTCACTCTTTCTGGTCCAGA 58.691 45.455 18.15 18.15 38.87 3.86
3576 11216 3.020984 GTTGAAACAGGGTTCAGGTGAA 58.979 45.455 0.00 0.00 38.69 3.18
3578 11218 2.654863 AGTTGAAACAGGGTTCAGGTG 58.345 47.619 0.00 0.00 38.69 4.00
3598 11238 9.461312 ACCAATTATCTAAGCACTTGTCAATAA 57.539 29.630 0.00 0.00 0.00 1.40
3607 11247 5.126061 CAGCCAAACCAATTATCTAAGCACT 59.874 40.000 0.00 0.00 0.00 4.40
3608 11248 5.125417 TCAGCCAAACCAATTATCTAAGCAC 59.875 40.000 0.00 0.00 0.00 4.40
3627 11267 4.261741 CCCAATTGCAATAGTGTATCAGCC 60.262 45.833 13.39 0.00 0.00 4.85
3636 11276 2.965147 GGTATGGCCCAATTGCAATAGT 59.035 45.455 13.39 0.00 27.78 2.12
3638 11278 2.697751 GTGGTATGGCCCAATTGCAATA 59.302 45.455 13.39 0.00 35.92 1.90
3641 11361 0.251967 TGTGGTATGGCCCAATTGCA 60.252 50.000 0.00 0.00 35.92 4.08
3657 11377 8.153479 TCCTATGAATAAAAATCGGTGATGTG 57.847 34.615 0.00 0.00 0.00 3.21
3662 11382 6.912591 GCAACTCCTATGAATAAAAATCGGTG 59.087 38.462 0.00 0.00 0.00 4.94
3705 11426 9.462606 CCCCTCTACAAAAGTCAATATTTACTT 57.537 33.333 8.87 8.87 37.54 2.24
3708 11429 9.457436 GAACCCCTCTACAAAAGTCAATATTTA 57.543 33.333 0.00 0.00 0.00 1.40
3715 11436 3.782656 GGAACCCCTCTACAAAAGTCA 57.217 47.619 0.00 0.00 0.00 3.41
3736 11457 6.757947 TGAAAAACAAATCTTGGAAGCTGAAG 59.242 34.615 0.00 0.00 34.12 3.02
3796 11643 6.713903 CAGCAAGGTAAACATAGATCATGGAT 59.286 38.462 0.00 0.00 39.13 3.41
3818 11665 2.113860 TAATCACCCACTTCAGCAGC 57.886 50.000 0.00 0.00 0.00 5.25
3852 11699 7.761409 TGGACAATCTGCATACATTTAACTTC 58.239 34.615 0.00 0.00 0.00 3.01
4006 11854 4.026475 GCTGCAGTATACGAAGCTTGTTAG 60.026 45.833 16.64 8.32 0.00 2.34
4017 11865 0.657659 CGGAGTCGCTGCAGTATACG 60.658 60.000 16.64 10.39 0.00 3.06
4043 11891 3.974719 AGGATCAGCTTGACTAGTCTGA 58.025 45.455 23.01 17.71 39.58 3.27
4053 11901 2.929592 GCAAAGCCAAAGGATCAGCTTG 60.930 50.000 0.00 0.00 44.48 4.01
4065 11913 2.592102 ATCTCCTTGAGCAAAGCCAA 57.408 45.000 0.00 0.00 34.24 4.52
4094 11942 4.471025 ACACAGACATCTTGTGATATCCCA 59.529 41.667 11.87 0.00 37.31 4.37
4097 11945 9.317936 TCATTTACACAGACATCTTGTGATATC 57.682 33.333 11.87 0.00 37.31 1.63
4229 12078 3.270433 AGAGAATGGGGAACATGAACCAT 59.730 43.478 0.00 4.59 45.18 3.55
4248 12097 2.709213 CTGGAGGCTCTGGAAAAAGAG 58.291 52.381 15.23 0.00 45.52 2.85
4285 12134 8.608844 ATCGTTTCTTCAACTTCTTTAGTGAT 57.391 30.769 0.00 0.00 37.12 3.06
4312 12161 3.513909 TCTCCCCTATTGGATGCAATG 57.486 47.619 21.41 11.47 35.39 2.82
4324 12173 3.116096 ACAGCACTGTAATCTCCCCTA 57.884 47.619 0.35 0.00 42.90 3.53
4325 12174 1.958288 ACAGCACTGTAATCTCCCCT 58.042 50.000 0.35 0.00 42.90 4.79
4339 12188 3.181434 ACCTCCCTGACATAAAAACAGCA 60.181 43.478 0.00 0.00 0.00 4.41
4357 12206 5.816955 AAGAGAATATGGCCTCTTACCTC 57.183 43.478 3.32 3.95 45.05 3.85
4380 12230 8.650143 AATAACCATGTTCTTCATAGTTTGGT 57.350 30.769 0.00 0.00 38.75 3.67
4382 12232 8.664798 TCGAATAACCATGTTCTTCATAGTTTG 58.335 33.333 0.00 0.00 38.75 2.93
4383 12233 8.786826 TCGAATAACCATGTTCTTCATAGTTT 57.213 30.769 0.00 0.00 38.75 2.66
4389 12239 7.876068 ACTACTTTCGAATAACCATGTTCTTCA 59.124 33.333 0.00 0.00 0.00 3.02
4390 12240 8.252964 ACTACTTTCGAATAACCATGTTCTTC 57.747 34.615 0.00 0.00 0.00 2.87
4391 12241 8.095169 AGACTACTTTCGAATAACCATGTTCTT 58.905 33.333 0.00 0.00 0.00 2.52
4392 12242 7.612677 AGACTACTTTCGAATAACCATGTTCT 58.387 34.615 0.00 0.00 0.00 3.01
4393 12243 7.829378 AGACTACTTTCGAATAACCATGTTC 57.171 36.000 0.00 0.00 0.00 3.18
4394 12244 9.886132 ATAAGACTACTTTCGAATAACCATGTT 57.114 29.630 0.00 0.00 37.53 2.71
4395 12245 9.886132 AATAAGACTACTTTCGAATAACCATGT 57.114 29.630 0.00 0.00 37.53 3.21
4401 12251 9.661187 CGCTAGAATAAGACTACTTTCGAATAA 57.339 33.333 0.00 0.00 37.53 1.40
4402 12252 8.834465 ACGCTAGAATAAGACTACTTTCGAATA 58.166 33.333 0.00 0.00 37.53 1.75
4403 12253 7.705214 ACGCTAGAATAAGACTACTTTCGAAT 58.295 34.615 0.00 0.00 37.53 3.34
4404 12254 7.081526 ACGCTAGAATAAGACTACTTTCGAA 57.918 36.000 0.00 0.00 37.53 3.71
4405 12255 6.674694 ACGCTAGAATAAGACTACTTTCGA 57.325 37.500 0.00 0.00 37.53 3.71
4406 12256 8.732227 GTTAACGCTAGAATAAGACTACTTTCG 58.268 37.037 0.00 0.00 37.53 3.46
4407 12257 9.018716 GGTTAACGCTAGAATAAGACTACTTTC 57.981 37.037 0.00 0.00 37.53 2.62
4415 12265 5.664294 TGGTGGTTAACGCTAGAATAAGA 57.336 39.130 0.00 0.00 0.00 2.10
4427 12277 7.736893 AGAGGACTAATATGATGGTGGTTAAC 58.263 38.462 0.00 0.00 0.00 2.01
4432 12282 6.295575 GGAAGAGAGGACTAATATGATGGTGG 60.296 46.154 0.00 0.00 0.00 4.61
4446 12296 6.987403 ATATAAACTGAGGGAAGAGAGGAC 57.013 41.667 0.00 0.00 0.00 3.85
4449 12299 6.484977 GCCAAATATAAACTGAGGGAAGAGAG 59.515 42.308 0.00 0.00 0.00 3.20
4450 12300 6.158695 AGCCAAATATAAACTGAGGGAAGAGA 59.841 38.462 0.00 0.00 0.00 3.10
4456 12309 5.449553 AGGAAGCCAAATATAAACTGAGGG 58.550 41.667 0.00 0.00 0.00 4.30
4462 12315 7.826690 TGTTCTGAAGGAAGCCAAATATAAAC 58.173 34.615 0.00 0.00 34.23 2.01
4473 12326 4.327680 AGGTGTAATGTTCTGAAGGAAGC 58.672 43.478 0.00 0.00 34.23 3.86
4479 12332 4.098914 AGGCAAGGTGTAATGTTCTGAA 57.901 40.909 0.00 0.00 0.00 3.02
4486 12339 4.396166 CCAAGAGTAAGGCAAGGTGTAATG 59.604 45.833 0.00 0.00 0.00 1.90
4491 12344 1.073923 ACCCAAGAGTAAGGCAAGGTG 59.926 52.381 0.00 0.00 0.00 4.00
4494 12347 1.676014 CCGACCCAAGAGTAAGGCAAG 60.676 57.143 0.00 0.00 0.00 4.01
4500 12353 3.094572 CCTCTAACCGACCCAAGAGTAA 58.905 50.000 0.00 0.00 34.86 2.24
4502 12355 1.076677 TCCTCTAACCGACCCAAGAGT 59.923 52.381 0.00 0.00 34.86 3.24
4503 12356 1.751924 CTCCTCTAACCGACCCAAGAG 59.248 57.143 0.00 0.00 36.13 2.85
4514 12367 4.221924 AGCTCCTGAAAAGACTCCTCTAAC 59.778 45.833 0.00 0.00 0.00 2.34
4520 12373 1.625818 TGGAGCTCCTGAAAAGACTCC 59.374 52.381 32.28 3.45 43.26 3.85
4530 12383 2.743636 TTTCGTAACTGGAGCTCCTG 57.256 50.000 31.73 31.73 40.37 3.86
4531 12384 3.983044 AATTTCGTAACTGGAGCTCCT 57.017 42.857 32.28 16.00 36.82 3.69
4532 12385 4.024809 GCATAATTTCGTAACTGGAGCTCC 60.025 45.833 26.78 26.78 0.00 4.70
4541 12394 8.267367 GCTAACTACAGAGCATAATTTCGTAAC 58.733 37.037 0.00 0.00 38.62 2.50
4542 12395 7.977293 TGCTAACTACAGAGCATAATTTCGTAA 59.023 33.333 0.00 0.00 43.64 3.18
4545 12398 6.828502 TGCTAACTACAGAGCATAATTTCG 57.171 37.500 0.00 0.00 43.64 3.46
4557 12411 5.574830 GCTTCCATATCGATGCTAACTACAG 59.425 44.000 8.54 0.00 31.88 2.74
4570 12424 4.271049 CAGTGTTTAGGTGCTTCCATATCG 59.729 45.833 1.79 0.00 39.02 2.92
4572 12426 5.179452 ACAGTGTTTAGGTGCTTCCATAT 57.821 39.130 0.00 0.00 39.02 1.78
4573 12427 4.041075 TGACAGTGTTTAGGTGCTTCCATA 59.959 41.667 0.00 0.00 39.02 2.74
4576 12430 2.846193 TGACAGTGTTTAGGTGCTTCC 58.154 47.619 0.00 0.00 0.00 3.46
4577 12431 5.215160 CAAATGACAGTGTTTAGGTGCTTC 58.785 41.667 0.00 0.00 0.00 3.86
4578 12432 4.644685 ACAAATGACAGTGTTTAGGTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
4579 12433 4.207165 ACAAATGACAGTGTTTAGGTGCT 58.793 39.130 0.00 0.00 0.00 4.40
4580 12434 4.036262 TGACAAATGACAGTGTTTAGGTGC 59.964 41.667 0.00 0.00 0.00 5.01
4581 12435 5.749596 TGACAAATGACAGTGTTTAGGTG 57.250 39.130 0.00 0.00 0.00 4.00
4588 12442 5.125356 TCACAGAATGACAAATGACAGTGT 58.875 37.500 0.00 0.00 39.69 3.55
4589 12443 5.678132 TCACAGAATGACAAATGACAGTG 57.322 39.130 0.00 0.00 39.69 3.66
4590 12444 6.889301 ATTCACAGAATGACAAATGACAGT 57.111 33.333 0.00 0.00 39.69 3.55
4593 12447 7.864379 ACTGAAATTCACAGAATGACAAATGAC 59.136 33.333 16.09 0.00 39.69 3.06
4594 12448 7.944061 ACTGAAATTCACAGAATGACAAATGA 58.056 30.769 16.09 0.00 39.69 2.57
4595 12449 9.338291 CTACTGAAATTCACAGAATGACAAATG 57.662 33.333 16.09 0.00 39.69 2.32
4599 12453 6.768483 TCCTACTGAAATTCACAGAATGACA 58.232 36.000 16.09 0.00 39.69 3.58
4620 12474 9.840427 CACATCTTAAATACGATTTGTTTTCCT 57.160 29.630 0.00 0.00 0.00 3.36
4621 12475 9.834628 TCACATCTTAAATACGATTTGTTTTCC 57.165 29.630 0.00 0.00 0.00 3.13
4627 12481 9.986833 TGATTGTCACATCTTAAATACGATTTG 57.013 29.630 0.00 0.00 0.00 2.32
4629 12483 8.830580 CCTGATTGTCACATCTTAAATACGATT 58.169 33.333 0.00 0.00 0.00 3.34
4631 12485 6.761242 CCCTGATTGTCACATCTTAAATACGA 59.239 38.462 0.00 0.00 0.00 3.43
4642 12496 5.455326 GGTCTATTAGCCCTGATTGTCACAT 60.455 44.000 0.00 0.00 0.00 3.21
4658 12539 4.580167 GCAAATGCACATGAGGGTCTATTA 59.420 41.667 0.00 0.00 41.59 0.98
4663 12544 3.727419 GCAAATGCACATGAGGGTC 57.273 52.632 0.00 0.00 41.59 4.46
4681 12778 5.410067 ACTATGAAATGCGGTTCCAAATTG 58.590 37.500 0.00 0.00 0.00 2.32
4691 12788 5.991328 AATAGTGTGACTATGAAATGCGG 57.009 39.130 0.00 0.00 40.32 5.69
4692 12789 9.373750 CATTAAATAGTGTGACTATGAAATGCG 57.626 33.333 13.20 0.00 40.32 4.73
4699 12796 7.279615 TGTCCCCATTAAATAGTGTGACTATG 58.720 38.462 0.00 0.00 40.32 2.23
4700 12797 7.446106 TGTCCCCATTAAATAGTGTGACTAT 57.554 36.000 0.00 0.00 42.86 2.12
4704 12801 5.882040 TGTTGTCCCCATTAAATAGTGTGA 58.118 37.500 0.00 0.00 0.00 3.58
4707 12804 7.035004 CACAATGTTGTCCCCATTAAATAGTG 58.965 38.462 0.00 0.00 39.91 2.74
4715 12812 4.540359 CATTCACAATGTTGTCCCCATT 57.460 40.909 0.00 0.00 39.91 3.16
4869 12966 3.000925 CGTTTTGGCCGTGTATAGATGAC 59.999 47.826 0.00 0.00 0.00 3.06
4884 12981 2.663119 GCAATTCAGCTAAGCGTTTTGG 59.337 45.455 0.00 0.00 0.00 3.28
4898 12995 4.915158 TTGTCATGTGTTGAGCAATTCA 57.085 36.364 0.00 0.00 34.17 2.57
4906 13003 5.590145 CAATCCAGTTTTGTCATGTGTTGA 58.410 37.500 0.00 0.00 0.00 3.18
4907 13004 4.209703 GCAATCCAGTTTTGTCATGTGTTG 59.790 41.667 0.00 0.00 0.00 3.33
4932 13030 7.565680 ACACTCCTTTTGTCTAATCGGATATT 58.434 34.615 0.00 0.00 0.00 1.28
4941 13039 7.121463 TGTTTGCTTAACACTCCTTTTGTCTAA 59.879 33.333 1.54 0.00 41.73 2.10
4952 13050 5.689383 TCCAGATTGTTTGCTTAACACTC 57.311 39.130 11.79 11.79 46.09 3.51
4953 13051 5.221244 GGTTCCAGATTGTTTGCTTAACACT 60.221 40.000 4.74 0.69 46.09 3.55
4961 13059 4.737054 CATACAGGTTCCAGATTGTTTGC 58.263 43.478 0.00 0.00 0.00 3.68
4970 13068 6.757897 TCAAAATTAGCATACAGGTTCCAG 57.242 37.500 0.00 0.00 0.00 3.86
4995 13096 1.542915 CTGCACCAAAGACATGAAGGG 59.457 52.381 0.00 0.00 0.00 3.95
4999 13100 1.883638 GCCTCTGCACCAAAGACATGA 60.884 52.381 0.00 0.00 37.47 3.07
5035 13136 2.160205 CTGTACCACTCGTTCTCCTCA 58.840 52.381 0.00 0.00 0.00 3.86
5044 13145 0.682852 TTGGTTCCCTGTACCACTCG 59.317 55.000 0.00 0.00 45.00 4.18
5108 13209 2.764007 AGTCCATGACTGGTGCTGA 58.236 52.632 0.00 0.00 41.76 4.26
5120 13221 0.251832 ACCTCACTCGGTCAGTCCAT 60.252 55.000 0.00 0.00 30.26 3.41
5171 13272 4.950475 TGAACAAAAATCCACACCTGTGTA 59.050 37.500 2.05 0.00 42.83 2.90
5254 13355 9.917129 ATTTAATTACCGTTTCCCTTTACAAAG 57.083 29.630 0.00 0.00 35.79 2.77
5293 13394 3.619419 GACGGAGGGAGTAGTTAGTTCT 58.381 50.000 0.00 0.00 0.00 3.01
5316 13417 5.678955 ACTTACTCCCTAAGACCATTGTC 57.321 43.478 0.00 0.00 42.09 3.18
5318 13419 8.265055 TGAAATACTTACTCCCTAAGACCATTG 58.735 37.037 0.00 0.00 36.13 2.82
5359 13474 1.003116 GATTCCTTACTGCGCATGCTG 60.003 52.381 12.24 10.56 44.78 4.41
5441 13558 1.589803 ACACGTAGAACCAAACCTGC 58.410 50.000 0.00 0.00 0.00 4.85
5459 13577 5.465724 GTCAACGTTGATTCCCCTCATATAC 59.534 44.000 31.81 12.07 39.73 1.47
5463 13581 2.305927 AGTCAACGTTGATTCCCCTCAT 59.694 45.455 31.81 8.71 39.73 2.90
5467 13585 1.810755 GGAAGTCAACGTTGATTCCCC 59.189 52.381 34.08 28.21 39.73 4.81
5576 13700 1.474077 AGATTTCAAGGGCGTCAATGC 59.526 47.619 0.00 0.00 0.00 3.56
5602 13726 2.434134 CGTTTCTTCTCCGCGACCG 61.434 63.158 8.23 0.00 0.00 4.79
5621 13746 3.181461 ACGATGACTCCCTGGATTTGATC 60.181 47.826 0.00 0.00 0.00 2.92
5753 13884 2.246091 AGTGAAGGAGGAGGAGGAAG 57.754 55.000 0.00 0.00 0.00 3.46
5754 13885 2.292323 GGTAGTGAAGGAGGAGGAGGAA 60.292 54.545 0.00 0.00 0.00 3.36
5755 13886 1.288335 GGTAGTGAAGGAGGAGGAGGA 59.712 57.143 0.00 0.00 0.00 3.71
5883 14014 2.671682 GGCTCGCCCTTCTCCTTT 59.328 61.111 0.00 0.00 0.00 3.11
6200 14336 2.384828 GCCGGAATAGAAAAACCCCAT 58.615 47.619 5.05 0.00 0.00 4.00
6204 14340 1.669265 CTCGGCCGGAATAGAAAAACC 59.331 52.381 27.83 0.00 0.00 3.27
6210 14346 1.721664 CGTGACTCGGCCGGAATAGA 61.722 60.000 27.83 2.94 35.71 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.