Multiple sequence alignment - TraesCS3B01G361000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G361000 chr3B 100.000 3163 0 0 1 3163 572743096 572746258 0.000000e+00 5842
1 TraesCS3B01G361000 chr3A 89.373 3237 193 70 10 3161 575491918 575495088 0.000000e+00 3932
2 TraesCS3B01G361000 chr3D 91.655 2217 150 18 34 2223 437486400 437488608 0.000000e+00 3037
3 TraesCS3B01G361000 chr3D 90.404 792 39 21 2395 3158 437489024 437489806 0.000000e+00 1007
4 TraesCS3B01G361000 chr3D 90.476 126 4 3 2183 2306 437488608 437488727 3.270000e-35 159
5 TraesCS3B01G361000 chr6B 92.011 1815 125 14 31 1836 711626629 711624826 0.000000e+00 2531
6 TraesCS3B01G361000 chr6B 90.537 782 71 3 1065 1846 711514667 711513889 0.000000e+00 1031
7 TraesCS3B01G361000 chr6B 89.898 782 74 5 1065 1846 711521289 711520513 0.000000e+00 1002
8 TraesCS3B01G361000 chr6B 89.642 782 78 3 1065 1846 711517358 711516580 0.000000e+00 992
9 TraesCS3B01G361000 chr6B 89.727 769 77 2 1065 1833 711515651 711514885 0.000000e+00 981
10 TraesCS3B01G361000 chr6B 89.386 782 79 4 1065 1846 711518341 711517564 0.000000e+00 981
11 TraesCS3B01G361000 chr6B 89.535 774 79 2 1065 1838 711512589 711511818 0.000000e+00 979
12 TraesCS3B01G361000 chr4B 90.968 155 13 1 172 325 78607768 78607614 1.150000e-49 207
13 TraesCS3B01G361000 chr4B 88.415 164 16 3 172 334 78607617 78607456 8.950000e-46 195
14 TraesCS3B01G361000 chr4B 89.103 156 16 1 171 325 78607920 78607765 3.220000e-45 193
15 TraesCS3B01G361000 chr5A 89.610 154 14 2 172 323 303399813 303399966 8.950000e-46 195
16 TraesCS3B01G361000 chr1D 87.879 165 16 4 163 324 97132460 97132623 1.160000e-44 191
17 TraesCS3B01G361000 chr7B 88.462 156 16 2 172 326 700413929 700413775 1.500000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G361000 chr3B 572743096 572746258 3162 False 5842.000000 5842 100.0000 1 3163 1 chr3B.!!$F1 3162
1 TraesCS3B01G361000 chr3A 575491918 575495088 3170 False 3932.000000 3932 89.3730 10 3161 1 chr3A.!!$F1 3151
2 TraesCS3B01G361000 chr3D 437486400 437489806 3406 False 1401.000000 3037 90.8450 34 3158 3 chr3D.!!$F1 3124
3 TraesCS3B01G361000 chr6B 711624826 711626629 1803 True 2531.000000 2531 92.0110 31 1836 1 chr6B.!!$R1 1805
4 TraesCS3B01G361000 chr6B 711511818 711521289 9471 True 994.333333 1031 89.7875 1065 1846 6 chr6B.!!$R2 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 1.276421 AGTAGTTGCTTCGACAGGCAT 59.724 47.619 7.55 0.0 38.3 4.40 F
575 593 2.505819 TGAGCTATTTCCTTCCAGTCCC 59.494 50.000 0.00 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 8168 1.001974 AGCACATTTACTCCGCTGTCA 59.998 47.619 0.0 0.0 0.00 3.58 R
2171 10900 0.035630 CTTGGAGCAGGAACTCTGGG 60.036 60.000 0.0 0.0 43.54 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.276421 AGTAGTTGCTTCGACAGGCAT 59.724 47.619 7.55 0.00 38.30 4.40
143 145 9.265901 CTTATTCTCAGTAATCATGTAAGTGGG 57.734 37.037 0.00 0.00 0.00 4.61
256 259 3.579147 TTTAGTGTGTTTGTTCGCTCG 57.421 42.857 0.00 0.00 0.00 5.03
401 404 7.986085 AATCTGGATAGCATACATAACCAAC 57.014 36.000 0.00 0.00 0.00 3.77
532 537 2.615447 CTGCAGTCTTTCAAAGCAGTGA 59.385 45.455 5.25 0.00 45.57 3.41
575 593 2.505819 TGAGCTATTTCCTTCCAGTCCC 59.494 50.000 0.00 0.00 0.00 4.46
607 625 5.003804 ACAAACTGTACAATAGCCCTCAAG 58.996 41.667 0.00 0.00 0.00 3.02
627 645 7.308348 CCTCAAGTGTTAACCGTAATGAAATGT 60.308 37.037 2.48 0.00 0.00 2.71
659 677 6.125029 AGTAAGCATTTCAGATTACAGCCAT 58.875 36.000 5.14 0.00 41.49 4.40
662 680 7.408756 AAGCATTTCAGATTACAGCCATTTA 57.591 32.000 0.00 0.00 0.00 1.40
663 681 7.408756 AGCATTTCAGATTACAGCCATTTAA 57.591 32.000 0.00 0.00 0.00 1.52
664 682 7.839907 AGCATTTCAGATTACAGCCATTTAAA 58.160 30.769 0.00 0.00 0.00 1.52
665 683 8.313292 AGCATTTCAGATTACAGCCATTTAAAA 58.687 29.630 0.00 0.00 0.00 1.52
791 811 7.270047 CCAAAATGGATTGCATTCTATCTGTT 58.730 34.615 7.77 1.77 40.96 3.16
845 866 4.389374 CACAGTACCTTCTGACACCATTT 58.611 43.478 0.65 0.00 38.63 2.32
858 879 6.826231 TCTGACACCATTTTCTTGTTGTCTTA 59.174 34.615 4.22 0.00 0.00 2.10
893 915 9.539825 AATTTACATTGAGTTAATTGTTGTGCA 57.460 25.926 0.00 0.00 37.87 4.57
1081 4056 8.755028 TCACCTTATTATTCACTTGTGCTAGTA 58.245 33.333 0.00 0.00 0.00 1.82
1096 4071 9.507280 CTTGTGCTAGTATATGTTTTCAAATGG 57.493 33.333 0.00 0.00 0.00 3.16
1105 4080 9.202273 GTATATGTTTTCAAATGGTGCTTTTCA 57.798 29.630 0.00 0.00 0.00 2.69
1115 4090 3.857052 TGGTGCTTTTCATCGGTACTAG 58.143 45.455 0.00 0.00 0.00 2.57
1498 8146 3.248029 GCTGATATTCGGCGGCAG 58.752 61.111 10.53 8.50 39.19 4.85
1535 9292 2.939103 GAGCAATGACAGCGGAGTAAAT 59.061 45.455 0.00 0.00 37.01 1.40
1622 9379 1.949847 GCACCAGCCTCGAAGCTCTA 61.950 60.000 5.31 0.00 42.61 2.43
1670 10396 4.379243 CGTCAAGGACCAGCGCCT 62.379 66.667 2.29 0.00 37.35 5.52
1808 10534 1.745115 GATGCCGTGCAAGCACCTA 60.745 57.895 18.54 6.40 44.40 3.08
1820 10546 1.511613 AGCACCTATACCATGCCAGT 58.488 50.000 0.00 0.00 40.33 4.00
1832 10558 4.672251 GCCAGTTGCATCATCCCT 57.328 55.556 0.00 0.00 40.77 4.20
1900 10626 1.588403 CGCAGCGAGGATCAGACAG 60.588 63.158 9.98 0.00 33.17 3.51
1924 10650 4.218686 AGCCCGCCCACAACCTTT 62.219 61.111 0.00 0.00 0.00 3.11
2039 10765 0.321671 CTTTCTCGTTCCTCTGGCCA 59.678 55.000 4.71 4.71 0.00 5.36
2084 10810 0.102663 GCTCTTACCAGTACGGAGGC 59.897 60.000 10.17 4.15 38.63 4.70
2138 10867 2.339769 GACCCTGGCCAGATAACCTAT 58.660 52.381 34.91 9.38 0.00 2.57
2141 10870 2.040412 CCCTGGCCAGATAACCTATTCC 59.960 54.545 34.91 0.00 0.00 3.01
2153 10882 1.755380 ACCTATTCCGAGTGGCACTAC 59.245 52.381 22.11 13.04 34.14 2.73
2156 10885 0.172803 ATTCCGAGTGGCACTACGAC 59.827 55.000 28.55 15.02 34.14 4.34
2170 10899 2.416107 TACGACCCGTGACACTCCCT 62.416 60.000 3.68 0.00 41.39 4.20
2171 10900 2.971452 GACCCGTGACACTCCCTC 59.029 66.667 3.68 0.00 0.00 4.30
2172 10901 2.603776 ACCCGTGACACTCCCTCC 60.604 66.667 3.68 0.00 0.00 4.30
2173 10902 3.391382 CCCGTGACACTCCCTCCC 61.391 72.222 3.68 0.00 0.00 4.30
2174 10903 2.603473 CCGTGACACTCCCTCCCA 60.603 66.667 3.68 0.00 0.00 4.37
2178 10907 0.543174 GTGACACTCCCTCCCAGAGT 60.543 60.000 0.00 0.00 45.45 3.24
2194 10923 0.036022 GAGTTCCTGCTCCAAGCTGT 59.964 55.000 0.11 0.00 42.97 4.40
2196 10925 1.912043 AGTTCCTGCTCCAAGCTGTAT 59.088 47.619 0.11 0.00 42.97 2.29
2210 10939 0.037326 CTGTATGCGTGGTGTGGAGT 60.037 55.000 0.00 0.00 0.00 3.85
2214 10983 2.489938 ATGCGTGGTGTGGAGTTTAT 57.510 45.000 0.00 0.00 0.00 1.40
2215 10984 3.620427 ATGCGTGGTGTGGAGTTTATA 57.380 42.857 0.00 0.00 0.00 0.98
2216 10985 3.620427 TGCGTGGTGTGGAGTTTATAT 57.380 42.857 0.00 0.00 0.00 0.86
2217 10986 4.739587 TGCGTGGTGTGGAGTTTATATA 57.260 40.909 0.00 0.00 0.00 0.86
2218 10987 5.284861 TGCGTGGTGTGGAGTTTATATAT 57.715 39.130 0.00 0.00 0.00 0.86
2219 10988 6.408107 TGCGTGGTGTGGAGTTTATATATA 57.592 37.500 0.00 0.00 0.00 0.86
2220 10989 6.999950 TGCGTGGTGTGGAGTTTATATATAT 58.000 36.000 0.00 0.00 0.00 0.86
2283 11053 0.892358 ATGTTGGCTGGAGCTGTGTG 60.892 55.000 0.00 0.00 41.70 3.82
2311 11086 1.916506 AGCTGTCTACTGAGCAGTGA 58.083 50.000 13.12 6.12 42.52 3.41
2312 11087 2.242926 AGCTGTCTACTGAGCAGTGAA 58.757 47.619 13.12 0.00 42.52 3.18
2313 11088 2.029470 AGCTGTCTACTGAGCAGTGAAC 60.029 50.000 13.12 10.77 42.52 3.18
2327 11111 7.484140 TGAGCAGTGAACTATATTCTGTAGTG 58.516 38.462 0.00 0.00 32.94 2.74
2342 11305 5.503927 TCTGTAGTGAAGTATACCGGTTCT 58.496 41.667 15.04 6.61 0.00 3.01
2350 11313 5.419788 TGAAGTATACCGGTTCTAGCTGAAA 59.580 40.000 15.04 0.00 36.30 2.69
2363 11326 9.109393 GGTTCTAGCTGAAATTGTATTATCACA 57.891 33.333 0.00 0.00 36.30 3.58
2368 11331 8.162878 AGCTGAAATTGTATTATCACAGGATG 57.837 34.615 0.00 0.00 46.00 3.51
2631 11625 1.401278 GGCTAGCTACCGCGTTATCTC 60.401 57.143 15.72 0.00 42.32 2.75
2632 11626 1.536331 GCTAGCTACCGCGTTATCTCT 59.464 52.381 7.70 0.00 42.32 3.10
2635 11629 2.810650 AGCTACCGCGTTATCTCTTTG 58.189 47.619 4.92 0.00 42.32 2.77
2642 11655 1.369625 CGTTATCTCTTTGCCCGCTT 58.630 50.000 0.00 0.00 0.00 4.68
2644 11657 2.633488 GTTATCTCTTTGCCCGCTTCT 58.367 47.619 0.00 0.00 0.00 2.85
2646 11659 0.107459 ATCTCTTTGCCCGCTTCTCC 60.107 55.000 0.00 0.00 0.00 3.71
2650 11663 2.190488 CTTTGCCCGCTTCTCCTCCT 62.190 60.000 0.00 0.00 0.00 3.69
2659 11672 1.468395 GCTTCTCCTCCTCGTTTCTCG 60.468 57.143 0.00 0.00 41.41 4.04
2733 11746 3.785982 TCGCAGAGCCTGTACCAA 58.214 55.556 4.45 0.00 33.43 3.67
2734 11747 1.292223 TCGCAGAGCCTGTACCAAC 59.708 57.895 4.45 0.00 33.43 3.77
2902 11915 5.527951 GGGAGGAAGAAAATCGAGGTAATTC 59.472 44.000 0.00 0.00 0.00 2.17
2965 11980 4.436079 ACCCCTCCAATTAGTTAGTCACT 58.564 43.478 0.00 0.00 39.87 3.41
2980 11995 1.444895 CACTGGCGCAATTTCCTGC 60.445 57.895 10.83 0.00 39.04 4.85
2994 12009 0.602638 TCCTGCGTGGTTCATGTGAC 60.603 55.000 0.00 0.00 37.07 3.67
3000 12015 1.003839 TGGTTCATGTGACTCCGCC 60.004 57.895 0.00 0.00 0.00 6.13
3063 12082 3.480470 CTGGACAACAGTCATGGACTTT 58.520 45.455 0.00 0.00 41.37 2.66
3067 12086 4.154918 GGACAACAGTCATGGACTTTCATC 59.845 45.833 0.00 0.00 41.37 2.92
3092 12111 1.983605 CGTGTTGTAGAGTAAGCACCG 59.016 52.381 0.00 0.00 0.00 4.94
3140 12164 6.875726 TCAACTGATTCAGTATTTCACTCTGG 59.124 38.462 19.27 0.00 44.62 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.812053 GTCCACCAGATGCACTATGATTC 59.188 47.826 0.00 0.00 0.00 2.52
1 2 3.200605 TGTCCACCAGATGCACTATGATT 59.799 43.478 0.00 0.00 0.00 2.57
2 3 2.773661 TGTCCACCAGATGCACTATGAT 59.226 45.455 0.00 0.00 0.00 2.45
3 4 2.187100 TGTCCACCAGATGCACTATGA 58.813 47.619 0.00 0.00 0.00 2.15
4 5 2.696989 TGTCCACCAGATGCACTATG 57.303 50.000 0.00 0.00 0.00 2.23
5 6 3.939740 ATTGTCCACCAGATGCACTAT 57.060 42.857 0.00 0.00 0.00 2.12
6 7 3.346315 CAATTGTCCACCAGATGCACTA 58.654 45.455 0.00 0.00 0.00 2.74
7 8 2.165167 CAATTGTCCACCAGATGCACT 58.835 47.619 0.00 0.00 0.00 4.40
8 9 1.203052 CCAATTGTCCACCAGATGCAC 59.797 52.381 4.43 0.00 0.00 4.57
11 12 3.955471 ACTACCAATTGTCCACCAGATG 58.045 45.455 4.43 0.00 0.00 2.90
15 16 4.647611 CAACTACTACCAATTGTCCACCA 58.352 43.478 4.43 0.00 0.00 4.17
22 23 4.688879 TGTCGAAGCAACTACTACCAATTG 59.311 41.667 0.00 0.00 0.00 2.32
50 51 2.295349 GCCTATTACACTGCCTACGCTA 59.705 50.000 0.00 0.00 35.36 4.26
143 145 5.220491 GCCAGTGATTTCTTAGTGAACGATC 60.220 44.000 0.00 0.00 33.88 3.69
234 237 4.034742 ACGAGCGAACAAACACACTAAAAT 59.965 37.500 0.00 0.00 0.00 1.82
256 259 4.445452 TGGACTACATACGGACTGAAAC 57.555 45.455 0.00 0.00 0.00 2.78
294 297 4.085721 CCTCAGTTTCGAATTATACGACGC 60.086 45.833 0.00 0.00 39.46 5.19
401 404 4.821805 ACATGGAAAACTCACCACTTACAG 59.178 41.667 0.00 0.00 39.06 2.74
521 524 7.039714 TCACTAGAACTTATCTCACTGCTTTGA 60.040 37.037 0.00 0.00 39.71 2.69
532 537 7.450124 TCACGTTTCTCACTAGAACTTATCT 57.550 36.000 0.00 0.00 41.48 1.98
575 593 6.640907 GCTATTGTACAGTTTGTTTTTCCAGG 59.359 38.462 0.00 0.00 0.00 4.45
607 625 6.148150 TCTCCACATTTCATTACGGTTAACAC 59.852 38.462 8.10 0.00 0.00 3.32
627 645 5.227569 TCTGAAATGCTTACTTGTCTCCA 57.772 39.130 0.00 0.00 0.00 3.86
812 833 5.183331 CAGAAGGTACTGTGCTACTTCAGTA 59.817 44.000 13.91 0.00 43.39 2.74
817 838 3.895656 TGTCAGAAGGTACTGTGCTACTT 59.104 43.478 0.00 0.00 40.86 2.24
876 897 5.764487 TCATGTGCACAACAATTAACTCA 57.236 34.783 25.72 0.00 43.61 3.41
891 912 4.782019 TGGGTTTCTATTGTTCATGTGC 57.218 40.909 0.00 0.00 0.00 4.57
893 915 8.531146 CCTAATTTGGGTTTCTATTGTTCATGT 58.469 33.333 0.00 0.00 0.00 3.21
1050 1077 8.296713 GCACAAGTGAATAATAAGGTGAAAAGA 58.703 33.333 4.04 0.00 0.00 2.52
1081 4056 8.851541 ATGAAAAGCACCATTTGAAAACATAT 57.148 26.923 0.00 0.00 0.00 1.78
1096 4071 6.476243 TTTTCTAGTACCGATGAAAAGCAC 57.524 37.500 8.06 0.00 34.69 4.40
1115 4090 9.670719 GCATTAGCAGGAAGTTTCTATATTTTC 57.329 33.333 0.00 0.00 41.58 2.29
1351 7016 4.695928 CAGACATAGCATCCATCATTCCAG 59.304 45.833 0.00 0.00 0.00 3.86
1518 8166 2.420022 GCACATTTACTCCGCTGTCATT 59.580 45.455 0.00 0.00 0.00 2.57
1520 8168 1.001974 AGCACATTTACTCCGCTGTCA 59.998 47.619 0.00 0.00 0.00 3.58
1535 9292 3.160585 CCTCCCCTGACAAGCACA 58.839 61.111 0.00 0.00 0.00 4.57
1566 9323 1.810412 GCTGAAGTTTGGACGGTCAGT 60.810 52.381 10.76 0.00 41.25 3.41
1605 9362 1.410882 GAATAGAGCTTCGAGGCTGGT 59.589 52.381 28.14 15.85 43.20 4.00
1676 10402 2.167861 GGAGTCGATTGCGGACTGC 61.168 63.158 0.00 0.00 46.70 4.40
1820 10546 1.203162 ACCAACCAAGGGATGATGCAA 60.203 47.619 0.00 0.00 0.00 4.08
1832 10558 1.748493 GAGTTGTGCTGAACCAACCAA 59.252 47.619 0.00 0.00 0.00 3.67
1981 10707 2.805353 CGTTCCTCGTGACAGGCG 60.805 66.667 0.00 0.00 32.91 5.52
2002 10728 3.148279 GGCTCCCTCCATCGTCGT 61.148 66.667 0.00 0.00 0.00 4.34
2039 10765 3.834799 GGGCTCGACGACCCGAAT 61.835 66.667 16.37 0.00 38.17 3.34
2066 10792 0.381089 CGCCTCCGTACTGGTAAGAG 59.619 60.000 4.11 0.23 39.52 2.85
2112 10841 4.436998 CTGGCCAGGGTCGTCGTC 62.437 72.222 26.14 0.00 0.00 4.20
2138 10867 1.582968 GTCGTAGTGCCACTCGGAA 59.417 57.895 0.00 0.00 0.00 4.30
2141 10870 2.181021 GGGTCGTAGTGCCACTCG 59.819 66.667 0.00 5.48 0.00 4.18
2153 10882 2.989824 AGGGAGTGTCACGGGTCG 60.990 66.667 0.00 0.00 0.00 4.79
2156 10885 3.391382 GGGAGGGAGTGTCACGGG 61.391 72.222 0.00 0.00 0.00 5.28
2170 10899 0.473694 TTGGAGCAGGAACTCTGGGA 60.474 55.000 0.00 0.00 43.54 4.37
2171 10900 0.035630 CTTGGAGCAGGAACTCTGGG 60.036 60.000 0.00 0.00 43.54 4.45
2172 10901 0.676151 GCTTGGAGCAGGAACTCTGG 60.676 60.000 0.00 0.00 43.54 3.86
2173 10902 0.324285 AGCTTGGAGCAGGAACTCTG 59.676 55.000 2.47 0.00 45.56 3.35
2174 10903 0.324285 CAGCTTGGAGCAGGAACTCT 59.676 55.000 2.47 0.00 45.56 3.24
2178 10907 1.679944 GCATACAGCTTGGAGCAGGAA 60.680 52.381 2.47 0.00 45.56 3.36
2194 10923 3.620427 ATAAACTCCACACCACGCATA 57.380 42.857 0.00 0.00 0.00 3.14
2196 10925 3.620427 ATATAAACTCCACACCACGCA 57.380 42.857 0.00 0.00 0.00 5.24
2283 11053 6.100004 TGCTCAGTAGACAGCTTACATTTAC 58.900 40.000 0.00 0.00 36.53 2.01
2312 11087 9.228949 CCGGTATACTTCACTACAGAATATAGT 57.771 37.037 2.25 0.00 32.98 2.12
2313 11088 9.228949 ACCGGTATACTTCACTACAGAATATAG 57.771 37.037 4.49 0.00 0.00 1.31
2327 11111 5.511234 TTCAGCTAGAACCGGTATACTTC 57.489 43.478 8.00 0.00 0.00 3.01
2333 11117 4.546829 ACAATTTCAGCTAGAACCGGTA 57.453 40.909 8.00 0.00 35.56 4.02
2337 11121 9.109393 TGTGATAATACAATTTCAGCTAGAACC 57.891 33.333 0.00 0.00 35.56 3.62
2342 11305 9.276590 CATCCTGTGATAATACAATTTCAGCTA 57.723 33.333 0.00 0.00 0.00 3.32
2350 11313 8.211030 TCCTCATCATCCTGTGATAATACAAT 57.789 34.615 0.00 0.00 45.76 2.71
2363 11326 4.554683 TCTTCACAGATCCTCATCATCCT 58.445 43.478 0.00 0.00 0.00 3.24
2364 11327 4.344679 ACTCTTCACAGATCCTCATCATCC 59.655 45.833 0.00 0.00 0.00 3.51
2368 11331 5.728471 TCAAACTCTTCACAGATCCTCATC 58.272 41.667 0.00 0.00 0.00 2.92
2371 11334 4.803088 CGATCAAACTCTTCACAGATCCTC 59.197 45.833 0.00 0.00 30.75 3.71
2439 11425 1.753073 CAGGACAAAATGGCATCTCCC 59.247 52.381 0.00 0.00 0.00 4.30
2572 11566 4.090057 GCGACGGGTTTGAGCAGC 62.090 66.667 0.00 0.00 0.00 5.25
2600 11594 1.185618 TAGCTAGCCGGCCACTATGG 61.186 60.000 26.15 7.31 41.55 2.74
2601 11595 0.038159 GTAGCTAGCCGGCCACTATG 60.038 60.000 26.15 8.20 0.00 2.23
2602 11596 1.186267 GGTAGCTAGCCGGCCACTAT 61.186 60.000 26.15 6.59 0.00 2.12
2603 11597 1.831286 GGTAGCTAGCCGGCCACTA 60.831 63.158 26.15 19.34 0.00 2.74
2623 11617 1.327764 GAAGCGGGCAAAGAGATAACG 59.672 52.381 0.00 0.00 0.00 3.18
2631 11625 1.746991 GGAGGAGAAGCGGGCAAAG 60.747 63.158 0.00 0.00 0.00 2.77
2632 11626 2.185310 GAGGAGGAGAAGCGGGCAAA 62.185 60.000 0.00 0.00 0.00 3.68
2635 11629 4.214327 CGAGGAGGAGAAGCGGGC 62.214 72.222 0.00 0.00 0.00 6.13
2642 11655 1.313812 GCCGAGAAACGAGGAGGAGA 61.314 60.000 0.00 0.00 45.77 3.71
2644 11657 1.304217 AGCCGAGAAACGAGGAGGA 60.304 57.895 0.00 0.00 45.77 3.71
2646 11659 1.139947 GGAGCCGAGAAACGAGGAG 59.860 63.158 0.00 0.00 45.77 3.69
2753 11766 3.319198 GGAGGTGCTTGGACGGGA 61.319 66.667 0.00 0.00 0.00 5.14
2822 11835 3.695606 GTCGGCTCCTGGTGCTGA 61.696 66.667 24.29 24.29 42.74 4.26
2874 11887 3.274288 CTCGATTTTCTTCCTCCCTTGG 58.726 50.000 0.00 0.00 0.00 3.61
2902 11915 1.654317 GGAGAGAGTGCAGAGCAATG 58.346 55.000 0.00 0.00 41.47 2.82
2980 11995 1.626654 GCGGAGTCACATGAACCACG 61.627 60.000 0.00 6.19 0.00 4.94
2994 12009 1.303074 CATCATGGGATGGGCGGAG 60.303 63.158 0.00 0.00 45.84 4.63
3032 12048 8.906867 CCATGACTGTTGTCCAGAATTATTTAT 58.093 33.333 0.00 0.00 44.49 1.40
3033 12049 8.106462 TCCATGACTGTTGTCCAGAATTATTTA 58.894 33.333 0.00 0.00 44.49 1.40
3063 12082 6.623114 GCTTACTCTACAACACGAAGAGATGA 60.623 42.308 5.63 0.00 39.29 2.92
3067 12086 4.617645 GTGCTTACTCTACAACACGAAGAG 59.382 45.833 0.00 0.00 42.04 2.85
3092 12111 9.764363 TTGATACCATACAACTATGATGAACTC 57.236 33.333 0.00 0.00 32.66 3.01
3140 12164 1.615392 AGCCAAGACAAATGCTGTTCC 59.385 47.619 0.00 0.00 38.84 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.