Multiple sequence alignment - TraesCS3B01G360900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G360900 chr3B 100.000 2762 0 0 1 2762 572678174 572680935 0.000000e+00 5101.0
1 TraesCS3B01G360900 chr3B 92.529 174 11 2 2048 2220 515251649 515251477 5.910000e-62 248.0
2 TraesCS3B01G360900 chr3A 93.504 2032 91 25 1 2021 575483517 575485518 0.000000e+00 2983.0
3 TraesCS3B01G360900 chr3A 92.982 171 11 1 2590 2760 575486684 575486853 5.910000e-62 248.0
4 TraesCS3B01G360900 chr3D 92.124 2057 113 23 1 2043 437474487 437476508 0.000000e+00 2856.0
5 TraesCS3B01G360900 chr3D 93.064 173 11 1 2590 2762 437477648 437477819 4.570000e-63 252.0
6 TraesCS3B01G360900 chr4A 96.185 367 13 1 2221 2586 703340087 703339721 1.420000e-167 599.0
7 TraesCS3B01G360900 chr4A 94.667 375 18 2 2221 2593 735935688 735935314 5.130000e-162 580.0
8 TraesCS3B01G360900 chr5B 95.161 372 15 3 2221 2589 467135519 467135148 3.960000e-163 584.0
9 TraesCS3B01G360900 chr5B 95.109 368 16 2 2221 2586 654492425 654492058 1.840000e-161 579.0
10 TraesCS3B01G360900 chr5B 94.865 370 17 2 2218 2586 324596956 324597324 6.630000e-161 577.0
11 TraesCS3B01G360900 chr5B 91.379 174 13 2 2048 2220 592777 592605 1.280000e-58 237.0
12 TraesCS3B01G360900 chr5B 89.655 174 16 2 2048 2220 23546710 23546882 1.290000e-53 220.0
13 TraesCS3B01G360900 chr5B 89.655 174 16 2 2048 2220 708842193 708842365 1.290000e-53 220.0
14 TraesCS3B01G360900 chr4B 95.393 369 14 3 2221 2587 20675823 20675456 3.960000e-163 584.0
15 TraesCS3B01G360900 chr2B 95.161 372 14 3 2218 2586 232741653 232742023 3.960000e-163 584.0
16 TraesCS3B01G360900 chr2B 94.851 369 16 3 2221 2587 756160456 756160089 8.580000e-160 573.0
17 TraesCS3B01G360900 chr7B 95.109 368 16 2 2221 2586 660672258 660671891 1.840000e-161 579.0
18 TraesCS3B01G360900 chr1D 83.721 258 42 0 1345 1602 407878354 407878097 7.640000e-61 244.0
19 TraesCS3B01G360900 chr6B 88.506 174 18 2 2048 2220 680807201 680807373 2.790000e-50 209.0
20 TraesCS3B01G360900 chr7D 87.845 181 12 4 2048 2219 403099610 403099431 1.300000e-48 204.0
21 TraesCS3B01G360900 chr5A 97.222 36 1 0 872 907 705145062 705145097 8.260000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G360900 chr3B 572678174 572680935 2761 False 5101.0 5101 100.000 1 2762 1 chr3B.!!$F1 2761
1 TraesCS3B01G360900 chr3A 575483517 575486853 3336 False 1615.5 2983 93.243 1 2760 2 chr3A.!!$F1 2759
2 TraesCS3B01G360900 chr3D 437474487 437477819 3332 False 1554.0 2856 92.594 1 2762 2 chr3D.!!$F1 2761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 223 0.872388 GTTGCTGAAACCTACCGTGG 59.128 55.0 0.0 0.0 32.13 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 2165 0.105408 AATACGGTGGCATACGGGAC 59.895 55.0 16.8 0.0 34.2 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.589958 TTCCTTCTAGACTAATAAGCTCTGG 57.410 40.000 0.00 0.00 0.00 3.86
50 53 9.474920 CTTCTAGACTAATAAGCTCTGGATTTG 57.525 37.037 0.00 0.00 0.00 2.32
88 91 5.849510 TCTATGTTACCCCGTGATAACATG 58.150 41.667 7.80 0.00 46.49 3.21
89 92 2.634600 TGTTACCCCGTGATAACATGC 58.365 47.619 0.00 0.00 36.59 4.06
90 93 2.027100 TGTTACCCCGTGATAACATGCA 60.027 45.455 0.00 0.00 36.59 3.96
91 94 3.211045 GTTACCCCGTGATAACATGCAT 58.789 45.455 0.00 0.00 32.56 3.96
92 95 1.679139 ACCCCGTGATAACATGCATG 58.321 50.000 25.09 25.09 0.00 4.06
95 98 2.886523 CCCCGTGATAACATGCATGATT 59.113 45.455 32.75 22.68 0.00 2.57
117 120 9.196552 TGATTGCACGAGAATATAAATGTCTAG 57.803 33.333 0.00 0.00 0.00 2.43
119 122 8.575565 TTGCACGAGAATATAAATGTCTAGAC 57.424 34.615 16.32 16.32 0.00 2.59
120 123 7.712797 TGCACGAGAATATAAATGTCTAGACA 58.287 34.615 27.07 27.07 46.44 3.41
121 124 8.194769 TGCACGAGAATATAAATGTCTAGACAA 58.805 33.333 28.43 13.66 45.41 3.18
137 140 2.038557 AGACAACCCAGCTAATCAACGT 59.961 45.455 0.00 0.00 0.00 3.99
140 143 3.634910 ACAACCCAGCTAATCAACGTTTT 59.365 39.130 0.00 0.00 0.00 2.43
150 153 9.559958 CAGCTAATCAACGTTTTAAAGAATCAT 57.440 29.630 0.00 0.00 0.00 2.45
187 190 8.818141 TGCTTTGGAGATTATATTCTAAGACG 57.182 34.615 8.72 0.00 0.00 4.18
213 216 3.520623 AGCCAAGTTGCTGAAACCT 57.479 47.368 0.00 0.00 40.90 3.50
216 219 1.269723 GCCAAGTTGCTGAAACCTACC 59.730 52.381 0.00 0.00 39.85 3.18
220 223 0.872388 GTTGCTGAAACCTACCGTGG 59.128 55.000 0.00 0.00 32.13 4.94
223 226 0.887387 GCTGAAACCTACCGTGGCAA 60.887 55.000 0.00 0.00 0.00 4.52
229 232 0.960364 ACCTACCGTGGCAAATGCTG 60.960 55.000 5.25 0.00 41.70 4.41
230 233 1.656818 CCTACCGTGGCAAATGCTGG 61.657 60.000 5.25 7.67 41.70 4.85
243 246 3.947910 AATGCTGGTGGTTGAAATGAG 57.052 42.857 0.00 0.00 0.00 2.90
244 247 2.655090 TGCTGGTGGTTGAAATGAGA 57.345 45.000 0.00 0.00 0.00 3.27
246 249 2.622942 TGCTGGTGGTTGAAATGAGAAC 59.377 45.455 0.00 0.00 0.00 3.01
248 251 3.256631 GCTGGTGGTTGAAATGAGAACAT 59.743 43.478 0.00 0.00 38.50 2.71
277 280 5.784750 TCGTAGCAGAAGAAAATCATGTG 57.215 39.130 0.00 0.00 0.00 3.21
306 309 5.746990 ATAGTAGTCCATGAATAGTGGCC 57.253 43.478 0.00 0.00 36.66 5.36
315 318 4.157289 CCATGAATAGTGGCCAGCATAATC 59.843 45.833 5.11 3.06 0.00 1.75
317 320 2.479566 ATAGTGGCCAGCATAATCGG 57.520 50.000 5.11 0.00 0.00 4.18
330 333 3.537580 CATAATCGGAAAGGGGAAACGA 58.462 45.455 0.00 0.00 38.00 3.85
339 342 4.763279 GGAAAGGGGAAACGAAGAACATTA 59.237 41.667 0.00 0.00 0.00 1.90
373 376 6.453476 AGGATTCTCCACCTTTTCTATCCTA 58.547 40.000 0.00 0.00 38.99 2.94
377 380 5.788430 TCTCCACCTTTTCTATCCTATCCA 58.212 41.667 0.00 0.00 0.00 3.41
402 405 3.384668 CGATCCAATAACATCGCTGTCT 58.615 45.455 0.00 0.00 35.84 3.41
749 755 2.436911 AGGAACGTTGGTGTCCTAACTT 59.563 45.455 5.00 0.00 0.00 2.66
782 788 2.034053 GGTTTTGCGATTGTGGTGAGAA 59.966 45.455 0.00 0.00 0.00 2.87
878 884 9.998106 AATCACTAATAAGTACACACTCTGTTT 57.002 29.630 0.00 0.00 33.48 2.83
894 900 9.355215 ACACTCTGTTTCTAAATATAAGACGTG 57.645 33.333 0.00 0.00 0.00 4.49
1151 1159 3.236896 GACTATACCTTCCGATCCCCAA 58.763 50.000 0.00 0.00 0.00 4.12
1232 1246 2.112198 ACACACACACCTGCAACGG 61.112 57.895 0.00 0.00 0.00 4.44
1235 1249 1.523711 CACACACCTGCAACGGTCT 60.524 57.895 0.00 0.00 34.29 3.85
1243 1257 1.134401 CCTGCAACGGTCTATCATGGT 60.134 52.381 0.00 0.00 0.00 3.55
1395 1409 0.398318 ACCGGCAGAAGAAGAAAGCT 59.602 50.000 0.00 0.00 0.00 3.74
1410 1424 2.359230 GCTCACGCAGCCTTCCTT 60.359 61.111 0.00 0.00 43.17 3.36
1575 1589 4.421479 CTGCCGTTCGAGGAGCGT 62.421 66.667 0.00 0.00 41.80 5.07
1597 1611 2.258591 GCTTCGGCTCTGTCGTCA 59.741 61.111 0.00 0.00 38.08 4.35
1650 1664 0.322277 ATTCTGGCAGTGCTGAGGTG 60.322 55.000 16.11 0.00 0.00 4.00
1689 1703 2.815308 GAGATCGATGGCGGTGGT 59.185 61.111 0.54 0.00 38.28 4.16
1692 1706 1.000955 GAGATCGATGGCGGTGGTATT 59.999 52.381 0.54 0.00 38.28 1.89
1698 1712 2.088423 GATGGCGGTGGTATTGTTTCA 58.912 47.619 0.00 0.00 0.00 2.69
1728 1742 1.594331 GTGTTCCTGAAGTGGTGGAC 58.406 55.000 0.00 0.00 0.00 4.02
1807 1826 8.086522 CCCAAATATCAGATAGAAAATGGCTTG 58.913 37.037 0.00 0.00 0.00 4.01
1808 1827 8.086522 CCAAATATCAGATAGAAAATGGCTTGG 58.913 37.037 0.00 0.00 0.00 3.61
1809 1828 6.830873 ATATCAGATAGAAAATGGCTTGGC 57.169 37.500 0.00 0.00 0.00 4.52
1812 1831 4.400251 TCAGATAGAAAATGGCTTGGCTTG 59.600 41.667 0.00 0.00 0.00 4.01
1813 1832 3.131755 AGATAGAAAATGGCTTGGCTTGC 59.868 43.478 0.00 0.00 0.00 4.01
1820 1839 2.985847 GCTTGGCTTGCCGGTCTT 60.986 61.111 1.90 0.00 0.00 3.01
1821 1840 2.564721 GCTTGGCTTGCCGGTCTTT 61.565 57.895 1.90 0.00 0.00 2.52
1822 1841 2.041153 CTTGGCTTGCCGGTCTTTT 58.959 52.632 1.90 0.00 0.00 2.27
1823 1842 0.039165 CTTGGCTTGCCGGTCTTTTC 60.039 55.000 1.90 0.00 0.00 2.29
1824 1843 1.460273 TTGGCTTGCCGGTCTTTTCC 61.460 55.000 1.90 0.00 0.00 3.13
1825 1844 2.636412 GGCTTGCCGGTCTTTTCCC 61.636 63.158 1.90 0.00 0.00 3.97
1826 1845 2.636412 GCTTGCCGGTCTTTTCCCC 61.636 63.158 1.90 0.00 0.00 4.81
1827 1846 1.977009 CTTGCCGGTCTTTTCCCCC 60.977 63.158 1.90 0.00 0.00 5.40
1887 1906 0.957888 GGGAGCAGAAGTGTGGAAGC 60.958 60.000 0.00 0.00 0.00 3.86
2027 2046 1.480205 CTTTCCAAAGTGCTGCAACG 58.520 50.000 2.77 0.00 0.00 4.10
2035 2054 0.250467 AGTGCTGCAACGGTGAAGAT 60.250 50.000 14.35 0.00 30.87 2.40
2036 2055 0.110056 GTGCTGCAACGGTGAAGATG 60.110 55.000 14.35 0.00 30.87 2.90
2037 2056 0.250252 TGCTGCAACGGTGAAGATGA 60.250 50.000 14.35 0.00 30.87 2.92
2039 2058 0.445436 CTGCAACGGTGAAGATGAGC 59.555 55.000 0.54 0.00 30.87 4.26
2040 2059 0.035317 TGCAACGGTGAAGATGAGCT 59.965 50.000 3.55 0.00 0.00 4.09
2041 2060 1.275010 TGCAACGGTGAAGATGAGCTA 59.725 47.619 3.55 0.00 0.00 3.32
2042 2061 2.289382 TGCAACGGTGAAGATGAGCTAA 60.289 45.455 3.55 0.00 0.00 3.09
2043 2062 2.349886 GCAACGGTGAAGATGAGCTAAG 59.650 50.000 3.55 0.00 0.00 2.18
2045 2064 3.791973 ACGGTGAAGATGAGCTAAGAG 57.208 47.619 0.00 0.00 0.00 2.85
2046 2065 3.093057 ACGGTGAAGATGAGCTAAGAGT 58.907 45.455 0.00 0.00 0.00 3.24
2047 2066 3.119316 ACGGTGAAGATGAGCTAAGAGTG 60.119 47.826 0.00 0.00 0.00 3.51
2050 2069 3.616379 GTGAAGATGAGCTAAGAGTGTGC 59.384 47.826 0.00 0.00 0.00 4.57
2051 2070 2.977772 AGATGAGCTAAGAGTGTGCC 57.022 50.000 0.00 0.00 0.00 5.01
2053 2072 3.636679 AGATGAGCTAAGAGTGTGCCTA 58.363 45.455 0.00 0.00 0.00 3.93
2054 2073 4.026744 AGATGAGCTAAGAGTGTGCCTAA 58.973 43.478 0.00 0.00 0.00 2.69
2055 2074 4.467795 AGATGAGCTAAGAGTGTGCCTAAA 59.532 41.667 0.00 0.00 0.00 1.85
2056 2075 3.926616 TGAGCTAAGAGTGTGCCTAAAC 58.073 45.455 0.00 0.00 0.00 2.01
2057 2076 3.578716 TGAGCTAAGAGTGTGCCTAAACT 59.421 43.478 0.00 0.00 0.00 2.66
2058 2077 4.040461 TGAGCTAAGAGTGTGCCTAAACTT 59.960 41.667 0.00 0.00 0.00 2.66
2061 2080 4.152580 GCTAAGAGTGTGCCTAAACTTGTC 59.847 45.833 0.00 0.00 0.00 3.18
2062 2081 4.423625 AAGAGTGTGCCTAAACTTGTCT 57.576 40.909 0.00 0.00 0.00 3.41
2065 2084 3.877508 GAGTGTGCCTAAACTTGTCTGTT 59.122 43.478 0.00 0.00 0.00 3.16
2066 2085 3.627577 AGTGTGCCTAAACTTGTCTGTTG 59.372 43.478 0.00 0.00 0.00 3.33
2067 2086 2.357637 TGTGCCTAAACTTGTCTGTTGC 59.642 45.455 0.00 0.00 0.00 4.17
2068 2087 1.601903 TGCCTAAACTTGTCTGTTGCG 59.398 47.619 0.00 0.00 0.00 4.85
2069 2088 1.069227 GCCTAAACTTGTCTGTTGCGG 60.069 52.381 0.00 0.00 0.00 5.69
2070 2089 2.218603 CCTAAACTTGTCTGTTGCGGT 58.781 47.619 0.00 0.00 0.00 5.68
2071 2090 2.223377 CCTAAACTTGTCTGTTGCGGTC 59.777 50.000 0.00 0.00 0.00 4.79
2072 2091 1.745232 AAACTTGTCTGTTGCGGTCA 58.255 45.000 0.00 0.00 0.00 4.02
2074 2093 0.178068 ACTTGTCTGTTGCGGTCAGT 59.822 50.000 3.31 0.00 34.86 3.41
2075 2094 1.299541 CTTGTCTGTTGCGGTCAGTT 58.700 50.000 3.31 0.00 34.86 3.16
2076 2095 1.261619 CTTGTCTGTTGCGGTCAGTTC 59.738 52.381 3.31 0.64 34.86 3.01
2078 2097 0.861837 GTCTGTTGCGGTCAGTTCAG 59.138 55.000 3.31 0.00 34.86 3.02
2080 2099 0.583438 CTGTTGCGGTCAGTTCAGTG 59.417 55.000 0.00 0.00 0.00 3.66
2081 2100 0.107897 TGTTGCGGTCAGTTCAGTGT 60.108 50.000 0.00 0.00 0.00 3.55
2082 2101 0.582005 GTTGCGGTCAGTTCAGTGTC 59.418 55.000 0.00 0.00 0.00 3.67
2083 2102 0.464036 TTGCGGTCAGTTCAGTGTCT 59.536 50.000 0.00 0.00 0.00 3.41
2084 2103 1.324383 TGCGGTCAGTTCAGTGTCTA 58.676 50.000 0.00 0.00 0.00 2.59
2086 2105 2.101750 TGCGGTCAGTTCAGTGTCTAAA 59.898 45.455 0.00 0.00 0.00 1.85
2087 2106 2.475487 GCGGTCAGTTCAGTGTCTAAAC 59.525 50.000 0.00 0.00 0.00 2.01
2088 2107 3.799232 GCGGTCAGTTCAGTGTCTAAACT 60.799 47.826 0.00 0.00 33.63 2.66
2090 2109 4.209288 CGGTCAGTTCAGTGTCTAAACTTG 59.791 45.833 0.00 0.00 31.04 3.16
2095 2114 8.827677 GTCAGTTCAGTGTCTAAACTTGTAAAT 58.172 33.333 0.00 0.00 31.04 1.40
2098 2117 9.826574 AGTTCAGTGTCTAAACTTGTAAATACA 57.173 29.630 0.00 0.00 29.09 2.29
2109 2128 8.696410 AAACTTGTAAATACACAAAAGTGGTG 57.304 30.769 0.38 0.00 37.93 4.17
2110 2129 6.270064 ACTTGTAAATACACAAAAGTGGTGC 58.730 36.000 0.38 0.00 39.87 5.01
2111 2130 6.096282 ACTTGTAAATACACAAAAGTGGTGCT 59.904 34.615 0.38 0.00 39.87 4.40
2112 2131 7.283580 ACTTGTAAATACACAAAAGTGGTGCTA 59.716 33.333 0.38 0.00 39.87 3.49
2113 2132 6.961576 TGTAAATACACAAAAGTGGTGCTAC 58.038 36.000 0.38 0.00 39.87 3.58
2115 2134 6.458232 AAATACACAAAAGTGGTGCTACAA 57.542 33.333 0.38 0.00 39.87 2.41
2116 2135 3.775661 ACACAAAAGTGGTGCTACAAC 57.224 42.857 0.38 0.00 39.87 3.32
2117 2136 3.352648 ACACAAAAGTGGTGCTACAACT 58.647 40.909 0.38 0.00 39.87 3.16
2118 2137 3.761752 ACACAAAAGTGGTGCTACAACTT 59.238 39.130 3.94 3.94 39.87 2.66
2119 2138 4.104776 CACAAAAGTGGTGCTACAACTTG 58.895 43.478 9.06 3.18 0.00 3.16
2121 2140 4.142469 ACAAAAGTGGTGCTACAACTTGTC 60.142 41.667 9.06 0.00 0.00 3.18
2122 2141 1.865865 AGTGGTGCTACAACTTGTCG 58.134 50.000 0.00 0.00 0.00 4.35
2123 2142 0.234884 GTGGTGCTACAACTTGTCGC 59.765 55.000 10.71 10.71 39.23 5.19
2124 2143 0.179070 TGGTGCTACAACTTGTCGCA 60.179 50.000 15.22 15.22 45.03 5.10
2126 2145 2.221676 TGCTACAACTTGTCGCACG 58.778 52.632 15.22 0.00 42.88 5.34
2127 2146 1.218875 TGCTACAACTTGTCGCACGG 61.219 55.000 15.22 0.00 42.88 4.94
2131 2150 0.179105 ACAACTTGTCGCACGGTGTA 60.179 50.000 10.24 0.00 0.00 2.90
2134 2153 2.927477 CAACTTGTCGCACGGTGTATAT 59.073 45.455 10.24 0.00 0.00 0.86
2135 2154 4.106909 CAACTTGTCGCACGGTGTATATA 58.893 43.478 10.24 0.00 0.00 0.86
2136 2155 3.699067 ACTTGTCGCACGGTGTATATAC 58.301 45.455 10.24 5.89 0.00 1.47
2137 2156 2.388106 TGTCGCACGGTGTATATACG 57.612 50.000 10.24 3.71 0.00 3.06
2142 2161 1.774639 CACGGTGTATATACGGTGCC 58.225 55.000 21.47 10.29 42.34 5.01
2143 2162 1.338973 CACGGTGTATATACGGTGCCT 59.661 52.381 21.47 0.00 42.34 4.75
2144 2163 1.610522 ACGGTGTATATACGGTGCCTC 59.389 52.381 11.24 0.00 33.56 4.70
2145 2164 1.068055 CGGTGTATATACGGTGCCTCC 60.068 57.143 8.33 2.09 0.00 4.30
2157 2176 4.603946 GCCTCCGTCCCGTATGCC 62.604 72.222 0.00 0.00 0.00 4.40
2161 2180 4.884257 CCGTCCCGTATGCCACCG 62.884 72.222 0.00 0.00 0.00 4.94
2162 2181 4.137872 CGTCCCGTATGCCACCGT 62.138 66.667 0.00 0.00 0.00 4.83
2163 2182 2.773745 CGTCCCGTATGCCACCGTA 61.774 63.158 0.00 0.00 0.00 4.02
2164 2183 1.744014 GTCCCGTATGCCACCGTAT 59.256 57.895 0.00 0.00 0.00 3.06
2165 2184 0.105408 GTCCCGTATGCCACCGTATT 59.895 55.000 0.00 0.00 0.00 1.89
2166 2185 0.831966 TCCCGTATGCCACCGTATTT 59.168 50.000 0.00 0.00 0.00 1.40
2167 2186 0.941542 CCCGTATGCCACCGTATTTG 59.058 55.000 0.00 0.00 0.00 2.32
2168 2187 0.306533 CCGTATGCCACCGTATTTGC 59.693 55.000 0.00 0.00 0.00 3.68
2172 2191 1.668419 ATGCCACCGTATTTGCTCTC 58.332 50.000 0.00 0.00 0.00 3.20
2173 2192 0.392461 TGCCACCGTATTTGCTCTCC 60.392 55.000 0.00 0.00 0.00 3.71
2174 2193 1.429148 GCCACCGTATTTGCTCTCCG 61.429 60.000 0.00 0.00 0.00 4.63
2176 2195 0.999406 CACCGTATTTGCTCTCCGTG 59.001 55.000 0.00 0.00 0.00 4.94
2178 2197 0.999406 CCGTATTTGCTCTCCGTGTG 59.001 55.000 0.00 0.00 0.00 3.82
2179 2198 0.999406 CGTATTTGCTCTCCGTGTGG 59.001 55.000 0.00 0.00 0.00 4.17
2181 2200 0.323302 TATTTGCTCTCCGTGTGGCA 59.677 50.000 0.00 0.00 34.14 4.92
2182 2201 0.322816 ATTTGCTCTCCGTGTGGCAT 60.323 50.000 0.00 0.00 34.59 4.40
2183 2202 1.236616 TTTGCTCTCCGTGTGGCATG 61.237 55.000 0.00 0.00 34.59 4.06
2184 2203 2.110757 TTGCTCTCCGTGTGGCATGA 62.111 55.000 0.00 0.00 34.59 3.07
2189 2737 2.359107 CCGTGTGGCATGACAGCT 60.359 61.111 0.00 0.00 34.17 4.24
2190 2738 2.683859 CCGTGTGGCATGACAGCTG 61.684 63.158 13.48 13.48 34.17 4.24
2191 2739 2.683859 CGTGTGGCATGACAGCTGG 61.684 63.158 19.93 0.31 34.17 4.85
2193 2741 3.807538 GTGGCATGACAGCTGGCG 61.808 66.667 19.93 4.08 41.75 5.69
2199 2747 3.196207 ATGACAGCTGGCGGTTGGT 62.196 57.895 19.93 0.75 0.00 3.67
2200 2748 3.050275 GACAGCTGGCGGTTGGTC 61.050 66.667 19.93 6.74 0.00 4.02
2203 2751 4.643387 AGCTGGCGGTTGGTCCAC 62.643 66.667 0.00 0.00 35.57 4.02
2207 2755 2.351276 GGCGGTTGGTCCACAGAT 59.649 61.111 0.00 0.00 35.57 2.90
2208 2756 1.745489 GGCGGTTGGTCCACAGATC 60.745 63.158 0.00 0.00 35.57 2.75
2221 2856 3.961480 CACAGATCAGTGGGTGAGTAA 57.039 47.619 10.26 0.00 39.07 2.24
2290 2925 6.489127 TTTGTGGTGGTAGATAATTTGACG 57.511 37.500 0.00 0.00 0.00 4.35
2291 2926 3.936453 TGTGGTGGTAGATAATTTGACGC 59.064 43.478 0.00 0.00 0.00 5.19
2292 2927 3.000925 GTGGTGGTAGATAATTTGACGCG 59.999 47.826 3.53 3.53 0.00 6.01
2293 2928 3.192466 GGTGGTAGATAATTTGACGCGT 58.808 45.455 13.85 13.85 0.00 6.01
2294 2929 3.000925 GGTGGTAGATAATTTGACGCGTG 59.999 47.826 20.70 0.00 0.00 5.34
2295 2930 3.861113 GTGGTAGATAATTTGACGCGTGA 59.139 43.478 20.70 4.74 0.00 4.35
2296 2931 4.026804 GTGGTAGATAATTTGACGCGTGAG 60.027 45.833 20.70 0.00 0.00 3.51
2297 2932 3.489785 GGTAGATAATTTGACGCGTGAGG 59.510 47.826 20.70 0.00 0.00 3.86
2298 2933 3.247006 AGATAATTTGACGCGTGAGGT 57.753 42.857 20.70 0.00 0.00 3.85
2299 2934 2.930040 AGATAATTTGACGCGTGAGGTG 59.070 45.455 20.70 0.00 0.00 4.00
2300 2935 0.793861 TAATTTGACGCGTGAGGTGC 59.206 50.000 20.70 0.06 0.00 5.01
2309 2944 2.909965 GTGAGGTGCGCCCCAAAA 60.910 61.111 12.68 0.00 34.57 2.44
2310 2945 2.117206 TGAGGTGCGCCCCAAAAT 59.883 55.556 12.68 0.00 34.57 1.82
2311 2946 1.532794 TGAGGTGCGCCCCAAAATT 60.533 52.632 12.68 0.00 34.57 1.82
2312 2947 1.215382 GAGGTGCGCCCCAAAATTC 59.785 57.895 12.68 0.00 34.57 2.17
2313 2948 1.531739 GAGGTGCGCCCCAAAATTCA 61.532 55.000 12.68 0.00 34.57 2.57
2314 2949 1.118356 AGGTGCGCCCCAAAATTCAA 61.118 50.000 12.68 0.00 34.57 2.69
2315 2950 0.948623 GGTGCGCCCCAAAATTCAAC 60.949 55.000 3.18 0.00 0.00 3.18
2316 2951 0.033366 GTGCGCCCCAAAATTCAACT 59.967 50.000 4.18 0.00 0.00 3.16
2317 2952 0.755686 TGCGCCCCAAAATTCAACTT 59.244 45.000 4.18 0.00 0.00 2.66
2318 2953 1.964223 TGCGCCCCAAAATTCAACTTA 59.036 42.857 4.18 0.00 0.00 2.24
2319 2954 2.564947 TGCGCCCCAAAATTCAACTTAT 59.435 40.909 4.18 0.00 0.00 1.73
2320 2955 3.007398 TGCGCCCCAAAATTCAACTTATT 59.993 39.130 4.18 0.00 0.00 1.40
2321 2956 4.000325 GCGCCCCAAAATTCAACTTATTT 59.000 39.130 0.00 0.00 0.00 1.40
2322 2957 4.142924 GCGCCCCAAAATTCAACTTATTTG 60.143 41.667 0.00 0.00 36.42 2.32
2331 2966 9.695526 CAAAATTCAACTTATTTGGACATCTGA 57.304 29.630 0.00 0.00 35.69 3.27
2332 2967 9.918630 AAAATTCAACTTATTTGGACATCTGAG 57.081 29.630 0.00 0.00 35.69 3.35
2333 2968 8.641498 AATTCAACTTATTTGGACATCTGAGT 57.359 30.769 0.00 0.00 35.69 3.41
2334 2969 9.739276 AATTCAACTTATTTGGACATCTGAGTA 57.261 29.630 0.00 0.00 35.69 2.59
2335 2970 8.777865 TTCAACTTATTTGGACATCTGAGTAG 57.222 34.615 0.00 0.00 35.69 2.57
2336 2971 6.818644 TCAACTTATTTGGACATCTGAGTAGC 59.181 38.462 0.00 0.00 35.69 3.58
2337 2972 6.552445 ACTTATTTGGACATCTGAGTAGCT 57.448 37.500 0.00 0.00 0.00 3.32
2338 2973 6.578023 ACTTATTTGGACATCTGAGTAGCTC 58.422 40.000 0.00 0.00 0.00 4.09
2339 2974 6.382570 ACTTATTTGGACATCTGAGTAGCTCT 59.617 38.462 0.00 0.00 0.00 4.09
2340 2975 4.727507 TTTGGACATCTGAGTAGCTCTC 57.272 45.455 0.00 0.00 43.03 3.20
2341 2976 2.293170 TGGACATCTGAGTAGCTCTCG 58.707 52.381 0.00 0.00 45.46 4.04
2343 2978 1.001815 GACATCTGAGTAGCTCTCGGC 60.002 57.143 13.94 0.00 46.16 5.54
2344 2979 1.028130 CATCTGAGTAGCTCTCGGCA 58.972 55.000 13.94 6.78 46.16 5.69
2345 2980 1.406898 CATCTGAGTAGCTCTCGGCAA 59.593 52.381 13.94 2.94 46.16 4.52
2346 2981 1.545841 TCTGAGTAGCTCTCGGCAAA 58.454 50.000 13.94 0.00 46.16 3.68
2347 2982 1.893137 TCTGAGTAGCTCTCGGCAAAA 59.107 47.619 13.94 0.00 46.16 2.44
2348 2983 2.299013 TCTGAGTAGCTCTCGGCAAAAA 59.701 45.455 13.94 0.00 46.16 1.94
2368 3003 4.993029 AAAGACAAATCGGGTCAAAACA 57.007 36.364 0.00 0.00 37.74 2.83
2369 3004 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
2370 3005 3.551846 AGACAAATCGGGTCAAAACAGT 58.448 40.909 0.00 0.00 37.74 3.55
2371 3006 3.315191 AGACAAATCGGGTCAAAACAGTG 59.685 43.478 0.00 0.00 37.74 3.66
2372 3007 2.223711 ACAAATCGGGTCAAAACAGTGC 60.224 45.455 0.00 0.00 0.00 4.40
2373 3008 0.591170 AATCGGGTCAAAACAGTGCG 59.409 50.000 0.00 0.00 0.00 5.34
2374 3009 0.534203 ATCGGGTCAAAACAGTGCGT 60.534 50.000 0.00 0.00 0.00 5.24
2375 3010 0.104487 TCGGGTCAAAACAGTGCGTA 59.896 50.000 0.00 0.00 0.00 4.42
2376 3011 0.938713 CGGGTCAAAACAGTGCGTAA 59.061 50.000 0.00 0.00 0.00 3.18
2377 3012 1.331138 CGGGTCAAAACAGTGCGTAAA 59.669 47.619 0.00 0.00 0.00 2.01
2378 3013 2.723209 GGGTCAAAACAGTGCGTAAAC 58.277 47.619 0.00 0.00 0.00 2.01
2379 3014 2.097791 GGGTCAAAACAGTGCGTAAACA 59.902 45.455 0.00 0.00 0.00 2.83
2380 3015 3.359654 GGTCAAAACAGTGCGTAAACAG 58.640 45.455 0.00 0.00 0.00 3.16
2381 3016 3.181504 GGTCAAAACAGTGCGTAAACAGT 60.182 43.478 0.00 0.00 0.00 3.55
2382 3017 4.034279 GGTCAAAACAGTGCGTAAACAGTA 59.966 41.667 0.00 0.00 0.00 2.74
2383 3018 5.447548 GGTCAAAACAGTGCGTAAACAGTAA 60.448 40.000 0.00 0.00 0.00 2.24
2384 3019 6.022821 GTCAAAACAGTGCGTAAACAGTAAA 58.977 36.000 0.00 0.00 0.00 2.01
2385 3020 6.022017 GTCAAAACAGTGCGTAAACAGTAAAC 60.022 38.462 0.00 0.00 0.00 2.01
2386 3021 5.548706 AAACAGTGCGTAAACAGTAAACA 57.451 34.783 0.00 0.00 0.00 2.83
2387 3022 5.744666 AACAGTGCGTAAACAGTAAACAT 57.255 34.783 0.00 0.00 0.00 2.71
2388 3023 5.744666 ACAGTGCGTAAACAGTAAACATT 57.255 34.783 0.00 0.00 0.00 2.71
2389 3024 6.126568 ACAGTGCGTAAACAGTAAACATTT 57.873 33.333 0.00 0.00 0.00 2.32
2390 3025 6.557110 ACAGTGCGTAAACAGTAAACATTTT 58.443 32.000 0.00 0.00 0.00 1.82
2391 3026 7.030768 ACAGTGCGTAAACAGTAAACATTTTT 58.969 30.769 0.00 0.00 0.00 1.94
2392 3027 8.182881 ACAGTGCGTAAACAGTAAACATTTTTA 58.817 29.630 0.00 0.00 0.00 1.52
2393 3028 8.466026 CAGTGCGTAAACAGTAAACATTTTTAC 58.534 33.333 6.41 6.41 45.22 2.01
2394 3029 8.182881 AGTGCGTAAACAGTAAACATTTTTACA 58.817 29.630 15.08 0.00 46.66 2.41
2395 3030 8.254470 GTGCGTAAACAGTAAACATTTTTACAC 58.746 33.333 15.08 5.04 46.66 2.90
2396 3031 7.966753 TGCGTAAACAGTAAACATTTTTACACA 59.033 29.630 15.08 0.00 46.66 3.72
2397 3032 8.254470 GCGTAAACAGTAAACATTTTTACACAC 58.746 33.333 15.08 5.89 46.66 3.82
2398 3033 9.493206 CGTAAACAGTAAACATTTTTACACACT 57.507 29.630 15.08 0.00 46.66 3.55
2401 3036 9.567848 AAACAGTAAACATTTTTACACACTCTG 57.432 29.630 15.08 7.23 46.66 3.35
2402 3037 8.500753 ACAGTAAACATTTTTACACACTCTGA 57.499 30.769 15.08 0.00 46.66 3.27
2403 3038 9.120538 ACAGTAAACATTTTTACACACTCTGAT 57.879 29.630 15.08 0.00 46.66 2.90
2404 3039 9.950680 CAGTAAACATTTTTACACACTCTGATT 57.049 29.630 15.08 0.00 46.66 2.57
2408 3043 9.651913 AAACATTTTTACACACTCTGATTTTGT 57.348 25.926 0.00 0.00 0.00 2.83
2409 3044 8.856490 ACATTTTTACACACTCTGATTTTGTC 57.144 30.769 0.00 0.00 0.00 3.18
2410 3045 8.686334 ACATTTTTACACACTCTGATTTTGTCT 58.314 29.630 0.00 0.00 0.00 3.41
2411 3046 9.520204 CATTTTTACACACTCTGATTTTGTCTT 57.480 29.630 0.00 0.00 0.00 3.01
2413 3048 9.921637 TTTTTACACACTCTGATTTTGTCTTTT 57.078 25.926 0.00 0.00 0.00 2.27
2414 3049 9.921637 TTTTACACACTCTGATTTTGTCTTTTT 57.078 25.926 0.00 0.00 0.00 1.94
2430 3065 2.254546 TTTTTGCCGAGAGCTTCTCA 57.745 45.000 11.93 1.03 43.55 3.27
2431 3066 1.800805 TTTTGCCGAGAGCTTCTCAG 58.199 50.000 11.93 3.88 43.55 3.35
2432 3067 0.969149 TTTGCCGAGAGCTTCTCAGA 59.031 50.000 11.93 0.00 43.55 3.27
2433 3068 1.189752 TTGCCGAGAGCTTCTCAGAT 58.810 50.000 11.93 0.00 43.55 2.90
2434 3069 0.459078 TGCCGAGAGCTTCTCAGATG 59.541 55.000 11.93 0.00 43.55 2.90
2435 3070 0.875474 GCCGAGAGCTTCTCAGATGC 60.875 60.000 4.31 4.31 43.55 3.91
2436 3071 0.746063 CCGAGAGCTTCTCAGATGCT 59.254 55.000 14.76 14.76 43.55 3.79
2443 3078 4.217836 AGCTTCTCAGATGCTCAAATGA 57.782 40.909 9.27 0.00 38.40 2.57
2444 3079 4.193090 AGCTTCTCAGATGCTCAAATGAG 58.807 43.478 9.27 6.05 38.40 2.90
2445 3080 3.940221 GCTTCTCAGATGCTCAAATGAGT 59.060 43.478 11.77 0.00 43.85 3.41
2446 3081 4.395542 GCTTCTCAGATGCTCAAATGAGTT 59.604 41.667 11.77 0.66 43.85 3.01
2447 3082 5.674068 GCTTCTCAGATGCTCAAATGAGTTG 60.674 44.000 11.77 6.26 43.85 3.16
2448 3083 5.156608 TCTCAGATGCTCAAATGAGTTGA 57.843 39.130 11.77 0.00 44.20 3.18
2449 3084 5.554070 TCTCAGATGCTCAAATGAGTTGAA 58.446 37.500 11.77 0.00 45.67 2.69
2450 3085 6.178324 TCTCAGATGCTCAAATGAGTTGAAT 58.822 36.000 11.77 2.01 45.67 2.57
2451 3086 6.657966 TCTCAGATGCTCAAATGAGTTGAATT 59.342 34.615 11.77 0.00 45.67 2.17
2452 3087 7.176165 TCTCAGATGCTCAAATGAGTTGAATTT 59.824 33.333 11.77 0.00 45.67 1.82
2453 3088 7.663827 TCAGATGCTCAAATGAGTTGAATTTT 58.336 30.769 11.77 0.00 45.67 1.82
2454 3089 7.597369 TCAGATGCTCAAATGAGTTGAATTTTG 59.403 33.333 11.77 0.00 45.67 2.44
2455 3090 6.872020 AGATGCTCAAATGAGTTGAATTTTGG 59.128 34.615 11.77 0.00 45.67 3.28
2456 3091 5.299148 TGCTCAAATGAGTTGAATTTTGGG 58.701 37.500 11.77 0.00 45.67 4.12
2457 3092 4.692155 GCTCAAATGAGTTGAATTTTGGGG 59.308 41.667 11.77 0.00 45.67 4.96
2458 3093 5.742838 GCTCAAATGAGTTGAATTTTGGGGT 60.743 40.000 11.77 0.00 45.67 4.95
2459 3094 5.609423 TCAAATGAGTTGAATTTTGGGGTG 58.391 37.500 0.00 0.00 43.43 4.61
2460 3095 3.683365 ATGAGTTGAATTTTGGGGTGC 57.317 42.857 0.00 0.00 0.00 5.01
2461 3096 2.392662 TGAGTTGAATTTTGGGGTGCA 58.607 42.857 0.00 0.00 0.00 4.57
2462 3097 2.102252 TGAGTTGAATTTTGGGGTGCAC 59.898 45.455 8.80 8.80 0.00 4.57
2463 3098 1.416030 AGTTGAATTTTGGGGTGCACC 59.584 47.619 28.57 28.57 39.11 5.01
2464 3099 1.416030 GTTGAATTTTGGGGTGCACCT 59.584 47.619 33.91 13.81 40.03 4.00
2465 3100 1.337118 TGAATTTTGGGGTGCACCTC 58.663 50.000 33.91 32.01 40.03 3.85
2466 3101 1.337118 GAATTTTGGGGTGCACCTCA 58.663 50.000 35.03 35.03 46.79 3.86
2475 3110 2.202946 TGCACCTCACGCGTCAAA 60.203 55.556 9.86 0.00 0.00 2.69
2479 3114 1.396996 GCACCTCACGCGTCAAATTAT 59.603 47.619 9.86 0.00 0.00 1.28
2480 3115 2.536928 GCACCTCACGCGTCAAATTATC 60.537 50.000 9.86 0.00 0.00 1.75
2483 3118 4.026804 CACCTCACGCGTCAAATTATCTAC 60.027 45.833 9.86 0.00 0.00 2.59
2484 3119 3.489785 CCTCACGCGTCAAATTATCTACC 59.510 47.826 9.86 0.00 0.00 3.18
2485 3120 4.109766 CTCACGCGTCAAATTATCTACCA 58.890 43.478 9.86 0.00 0.00 3.25
2491 3126 4.393680 GCGTCAAATTATCTACCACCACAA 59.606 41.667 0.00 0.00 0.00 3.33
2557 3203 2.088950 TTTCTAAGCGTGGGTGTAGC 57.911 50.000 0.00 0.00 0.00 3.58
2558 3204 1.263356 TTCTAAGCGTGGGTGTAGCT 58.737 50.000 0.00 0.00 43.90 3.32
2559 3205 0.530744 TCTAAGCGTGGGTGTAGCTG 59.469 55.000 0.00 0.00 41.53 4.24
2561 3207 0.530744 TAAGCGTGGGTGTAGCTGAG 59.469 55.000 0.00 0.00 41.53 3.35
2562 3208 2.788191 AAGCGTGGGTGTAGCTGAGC 62.788 60.000 0.00 0.00 41.53 4.26
2563 3209 2.125512 CGTGGGTGTAGCTGAGCC 60.126 66.667 0.00 2.23 0.00 4.70
2565 3211 3.390521 TGGGTGTAGCTGAGCCCG 61.391 66.667 0.00 0.00 43.89 6.13
2566 3212 4.162690 GGGTGTAGCTGAGCCCGG 62.163 72.222 0.00 0.00 0.00 5.73
2567 3213 4.162690 GGTGTAGCTGAGCCCGGG 62.163 72.222 19.09 19.09 0.00 5.73
2568 3214 3.391382 GTGTAGCTGAGCCCGGGT 61.391 66.667 24.63 9.10 0.00 5.28
2569 3215 3.390521 TGTAGCTGAGCCCGGGTG 61.391 66.667 24.63 11.33 0.00 4.61
2570 3216 4.840005 GTAGCTGAGCCCGGGTGC 62.840 72.222 24.63 20.46 0.00 5.01
2574 3220 3.790437 CTGAGCCCGGGTGCAGAT 61.790 66.667 29.78 9.09 0.00 2.90
2575 3221 3.329889 TGAGCCCGGGTGCAGATT 61.330 61.111 24.63 0.00 0.00 2.40
2576 3222 1.971505 CTGAGCCCGGGTGCAGATTA 61.972 60.000 29.78 7.33 0.00 1.75
2577 3223 1.227674 GAGCCCGGGTGCAGATTAG 60.228 63.158 24.63 0.00 0.00 1.73
2578 3224 2.902343 GCCCGGGTGCAGATTAGC 60.902 66.667 24.63 0.00 0.00 3.09
2579 3225 2.203209 CCCGGGTGCAGATTAGCC 60.203 66.667 14.18 0.00 0.00 3.93
2585 3231 4.521075 TGCAGATTAGCCGCACTC 57.479 55.556 0.00 0.00 0.00 3.51
2586 3232 1.596408 TGCAGATTAGCCGCACTCA 59.404 52.632 0.00 0.00 0.00 3.41
2587 3233 0.036483 TGCAGATTAGCCGCACTCAA 60.036 50.000 0.00 0.00 0.00 3.02
2588 3234 1.086696 GCAGATTAGCCGCACTCAAA 58.913 50.000 0.00 0.00 0.00 2.69
2591 3473 3.312421 GCAGATTAGCCGCACTCAAATTA 59.688 43.478 0.00 0.00 0.00 1.40
2605 3487 7.522073 CGCACTCAAATTATACCTAAATGGCAT 60.522 37.037 0.00 0.00 40.22 4.40
2612 3494 0.751643 ACCTAAATGGCATCACGGGC 60.752 55.000 0.00 0.00 40.22 6.13
2629 3511 8.783093 CATCACGGGCAGAGAATAATTAATTTA 58.217 33.333 5.91 0.00 0.00 1.40
2722 3604 0.754957 TGTTGGCCCACCTGTTTCAG 60.755 55.000 4.19 0.00 36.63 3.02
2737 3619 7.529516 CCTGTTTCAGGCAAAATGGCACATA 62.530 44.000 6.68 0.00 44.53 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.400052 AGAAGGAATAAGCAATTATTTGGTGGT 59.600 33.333 3.04 0.00 42.53 4.16
5 6 9.920946 TCTAGAAGGAATAAGCAATTATTTGGT 57.079 29.630 0.00 0.00 45.16 3.67
38 39 8.414629 AGATAAAGAAAAACAAATCCAGAGCT 57.585 30.769 0.00 0.00 0.00 4.09
39 40 8.518702 AGAGATAAAGAAAAACAAATCCAGAGC 58.481 33.333 0.00 0.00 0.00 4.09
41 42 9.799106 AGAGAGATAAAGAAAAACAAATCCAGA 57.201 29.630 0.00 0.00 0.00 3.86
74 77 1.965935 TCATGCATGTTATCACGGGG 58.034 50.000 25.43 0.00 0.00 5.73
89 92 8.501580 AGACATTTATATTCTCGTGCAATCATG 58.498 33.333 0.00 0.00 0.00 3.07
90 93 8.613060 AGACATTTATATTCTCGTGCAATCAT 57.387 30.769 0.00 0.00 0.00 2.45
91 94 9.196552 CTAGACATTTATATTCTCGTGCAATCA 57.803 33.333 0.00 0.00 0.00 2.57
92 95 9.411801 TCTAGACATTTATATTCTCGTGCAATC 57.588 33.333 0.00 0.00 0.00 2.67
95 98 7.712797 TGTCTAGACATTTATATTCTCGTGCA 58.287 34.615 21.74 0.00 36.21 4.57
99 102 8.141909 TGGGTTGTCTAGACATTTATATTCTCG 58.858 37.037 25.68 0.00 41.52 4.04
117 120 2.423577 ACGTTGATTAGCTGGGTTGTC 58.576 47.619 0.00 0.00 0.00 3.18
119 122 3.915437 AAACGTTGATTAGCTGGGTTG 57.085 42.857 0.00 0.00 0.00 3.77
120 123 6.263617 TCTTTAAAACGTTGATTAGCTGGGTT 59.736 34.615 0.00 0.00 0.00 4.11
121 124 5.766174 TCTTTAAAACGTTGATTAGCTGGGT 59.234 36.000 0.00 0.00 0.00 4.51
140 143 8.081517 AGCATGGAATTTGGAATGATTCTTTA 57.918 30.769 5.03 0.00 33.75 1.85
182 185 4.610945 CAACTTGGCTGAATTTTCGTCTT 58.389 39.130 0.00 0.00 0.00 3.01
186 189 3.017265 AGCAACTTGGCTGAATTTTCG 57.983 42.857 0.00 0.00 43.89 3.46
213 216 1.074072 ACCAGCATTTGCCACGGTA 59.926 52.632 7.02 0.00 43.38 4.02
216 219 2.086251 AACCACCAGCATTTGCCACG 62.086 55.000 0.00 0.00 43.38 4.94
220 223 2.237393 TTTCAACCACCAGCATTTGC 57.763 45.000 0.00 0.00 42.49 3.68
223 226 3.499338 TCTCATTTCAACCACCAGCATT 58.501 40.909 0.00 0.00 0.00 3.56
229 232 5.710099 TCCTTATGTTCTCATTTCAACCACC 59.290 40.000 0.00 0.00 35.70 4.61
230 233 6.817765 TCCTTATGTTCTCATTTCAACCAC 57.182 37.500 0.00 0.00 35.70 4.16
243 246 6.273825 TCTTCTGCTACGATTCCTTATGTTC 58.726 40.000 0.00 0.00 0.00 3.18
244 247 6.222038 TCTTCTGCTACGATTCCTTATGTT 57.778 37.500 0.00 0.00 0.00 2.71
246 249 7.539712 TTTTCTTCTGCTACGATTCCTTATG 57.460 36.000 0.00 0.00 0.00 1.90
248 251 7.327975 TGATTTTCTTCTGCTACGATTCCTTA 58.672 34.615 0.00 0.00 0.00 2.69
277 280 9.482627 CACTATTCATGGACTACTATTTTCTCC 57.517 37.037 0.00 0.00 0.00 3.71
306 309 2.638480 TCCCCTTTCCGATTATGCTG 57.362 50.000 0.00 0.00 0.00 4.41
315 318 1.534163 GTTCTTCGTTTCCCCTTTCCG 59.466 52.381 0.00 0.00 0.00 4.30
317 320 4.848562 AATGTTCTTCGTTTCCCCTTTC 57.151 40.909 0.00 0.00 0.00 2.62
330 333 8.325046 AGAATCCTAGTTCTTGCTAATGTTCTT 58.675 33.333 0.00 0.00 34.92 2.52
373 376 4.561530 CGATGTTATTGGATCGGAGTGGAT 60.562 45.833 0.00 0.00 38.23 3.41
377 380 2.365617 AGCGATGTTATTGGATCGGAGT 59.634 45.455 0.00 0.00 41.44 3.85
402 405 0.618458 AGGGAATGAAGCAAGCGGTA 59.382 50.000 0.00 0.00 0.00 4.02
749 755 1.879380 CGCAAAACCTCACAGGATTCA 59.121 47.619 0.00 0.00 37.67 2.57
782 788 4.880120 CAGGAGCATGAACATGTCAACTAT 59.120 41.667 14.82 0.00 40.50 2.12
878 884 6.636705 ACTGCCAACACGTCTTATATTTAGA 58.363 36.000 0.00 0.00 0.00 2.10
894 900 5.006153 ACCTCTGTTTTTAAACTGCCAAC 57.994 39.130 6.87 0.00 39.59 3.77
926 932 5.583457 CGAAAGAAATTCACGTAACCCCTAT 59.417 40.000 0.00 0.00 37.96 2.57
976 982 6.699575 AAAAGCTTATTACCGATTCAGCAT 57.300 33.333 0.00 0.00 0.00 3.79
1232 1246 1.664965 GCGGCCGACCATGATAGAC 60.665 63.158 33.48 1.41 34.57 2.59
1235 1249 4.293648 CCGCGGCCGACCATGATA 62.294 66.667 33.48 0.00 36.29 2.15
1395 1409 1.004560 CTCAAGGAAGGCTGCGTGA 60.005 57.895 0.00 0.00 31.09 4.35
1410 1424 1.203237 AGCTTCTTGACCTCCTCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
1533 1547 0.665670 CGATCTCAGCCGCATCGATT 60.666 55.000 0.00 0.00 41.61 3.34
1689 1703 5.690865 ACACCAAGTTCTCCTGAAACAATA 58.309 37.500 0.00 0.00 33.52 1.90
1692 1706 3.644966 ACACCAAGTTCTCCTGAAACA 57.355 42.857 0.00 0.00 33.52 2.83
1807 1826 2.636412 GGGAAAAGACCGGCAAGCC 61.636 63.158 0.00 0.00 0.00 4.35
1808 1827 2.636412 GGGGAAAAGACCGGCAAGC 61.636 63.158 0.00 0.00 0.00 4.01
1809 1828 1.977009 GGGGGAAAAGACCGGCAAG 60.977 63.158 0.00 0.00 0.00 4.01
1824 1843 3.056035 GCTACTCCGTATATGAAAGGGGG 60.056 52.174 0.00 0.00 0.00 5.40
1825 1844 3.056035 GGCTACTCCGTATATGAAAGGGG 60.056 52.174 0.00 0.00 0.00 4.79
1826 1845 3.833070 AGGCTACTCCGTATATGAAAGGG 59.167 47.826 0.00 0.00 40.77 3.95
1827 1846 4.810790 CAGGCTACTCCGTATATGAAAGG 58.189 47.826 0.00 0.00 40.77 3.11
1828 1847 4.238514 GCAGGCTACTCCGTATATGAAAG 58.761 47.826 0.00 0.00 40.77 2.62
1829 1848 3.639561 TGCAGGCTACTCCGTATATGAAA 59.360 43.478 0.00 0.00 40.77 2.69
1830 1849 3.227614 TGCAGGCTACTCCGTATATGAA 58.772 45.455 0.00 0.00 40.77 2.57
1831 1850 2.871453 TGCAGGCTACTCCGTATATGA 58.129 47.619 0.00 0.00 40.77 2.15
1832 1851 3.193479 TCATGCAGGCTACTCCGTATATG 59.807 47.826 0.00 0.00 40.77 1.78
1833 1852 3.431415 TCATGCAGGCTACTCCGTATAT 58.569 45.455 0.00 0.00 40.77 0.86
1834 1853 2.871453 TCATGCAGGCTACTCCGTATA 58.129 47.619 0.00 0.00 40.77 1.47
1835 1854 1.704641 TCATGCAGGCTACTCCGTAT 58.295 50.000 0.00 0.00 40.77 3.06
1836 1855 1.480789 TTCATGCAGGCTACTCCGTA 58.519 50.000 0.00 0.00 40.77 4.02
1837 1856 0.833287 ATTCATGCAGGCTACTCCGT 59.167 50.000 0.00 0.00 40.77 4.69
1838 1857 2.820059 TATTCATGCAGGCTACTCCG 57.180 50.000 0.00 0.00 40.77 4.63
1839 1858 4.217118 CCATTTATTCATGCAGGCTACTCC 59.783 45.833 0.00 0.00 0.00 3.85
1840 1859 4.823989 ACCATTTATTCATGCAGGCTACTC 59.176 41.667 0.00 0.00 0.00 2.59
1841 1860 4.581824 CACCATTTATTCATGCAGGCTACT 59.418 41.667 0.00 0.00 0.00 2.57
1842 1861 4.261741 CCACCATTTATTCATGCAGGCTAC 60.262 45.833 0.00 0.00 0.00 3.58
1851 1870 3.569491 CTCCCAGCCACCATTTATTCAT 58.431 45.455 0.00 0.00 0.00 2.57
1887 1906 2.379972 AGACCTTGATAGGGTGTCTCG 58.620 52.381 0.00 0.00 46.58 4.04
2027 2046 4.180057 CACACTCTTAGCTCATCTTCACC 58.820 47.826 0.00 0.00 0.00 4.02
2035 2054 3.578716 AGTTTAGGCACACTCTTAGCTCA 59.421 43.478 0.00 0.00 0.00 4.26
2036 2055 4.195225 AGTTTAGGCACACTCTTAGCTC 57.805 45.455 0.00 0.00 0.00 4.09
2037 2056 4.202367 ACAAGTTTAGGCACACTCTTAGCT 60.202 41.667 0.00 0.00 0.00 3.32
2039 2058 5.406780 CAGACAAGTTTAGGCACACTCTTAG 59.593 44.000 0.00 0.00 0.00 2.18
2040 2059 5.163343 ACAGACAAGTTTAGGCACACTCTTA 60.163 40.000 0.00 0.00 0.00 2.10
2041 2060 4.130118 CAGACAAGTTTAGGCACACTCTT 58.870 43.478 0.00 0.00 0.00 2.85
2042 2061 3.134804 ACAGACAAGTTTAGGCACACTCT 59.865 43.478 0.00 0.00 0.00 3.24
2043 2062 3.467803 ACAGACAAGTTTAGGCACACTC 58.532 45.455 0.00 0.00 0.00 3.51
2045 2064 3.792124 GCAACAGACAAGTTTAGGCACAC 60.792 47.826 0.00 0.00 0.00 3.82
2046 2065 2.357637 GCAACAGACAAGTTTAGGCACA 59.642 45.455 0.00 0.00 0.00 4.57
2047 2066 2.602217 CGCAACAGACAAGTTTAGGCAC 60.602 50.000 0.00 0.00 0.00 5.01
2050 2069 2.218603 ACCGCAACAGACAAGTTTAGG 58.781 47.619 0.00 0.00 33.89 2.69
2051 2070 2.869801 TGACCGCAACAGACAAGTTTAG 59.130 45.455 0.00 0.00 0.00 1.85
2053 2072 1.670811 CTGACCGCAACAGACAAGTTT 59.329 47.619 0.00 0.00 37.54 2.66
2054 2073 1.299541 CTGACCGCAACAGACAAGTT 58.700 50.000 0.00 0.00 37.54 2.66
2055 2074 0.178068 ACTGACCGCAACAGACAAGT 59.822 50.000 0.00 0.00 38.55 3.16
2056 2075 1.261619 GAACTGACCGCAACAGACAAG 59.738 52.381 0.00 0.00 38.55 3.16
2057 2076 1.295792 GAACTGACCGCAACAGACAA 58.704 50.000 0.00 0.00 38.55 3.18
2058 2077 0.176910 TGAACTGACCGCAACAGACA 59.823 50.000 0.00 0.00 38.55 3.41
2061 2080 0.583438 CACTGAACTGACCGCAACAG 59.417 55.000 0.00 0.00 40.68 3.16
2062 2081 0.107897 ACACTGAACTGACCGCAACA 60.108 50.000 0.00 0.00 0.00 3.33
2065 2084 1.324383 TAGACACTGAACTGACCGCA 58.676 50.000 0.00 0.00 0.00 5.69
2066 2085 2.433868 TTAGACACTGAACTGACCGC 57.566 50.000 0.00 0.00 0.00 5.68
2067 2086 3.978687 AGTTTAGACACTGAACTGACCG 58.021 45.455 7.85 0.00 38.55 4.79
2068 2087 5.116882 ACAAGTTTAGACACTGAACTGACC 58.883 41.667 9.09 0.00 38.95 4.02
2069 2088 7.766219 TTACAAGTTTAGACACTGAACTGAC 57.234 36.000 9.09 0.00 38.95 3.51
2070 2089 8.958119 ATTTACAAGTTTAGACACTGAACTGA 57.042 30.769 9.09 0.00 38.95 3.41
2072 2091 9.826574 TGTATTTACAAGTTTAGACACTGAACT 57.173 29.630 0.00 0.00 41.06 3.01
2074 2093 9.602568 TGTGTATTTACAAGTTTAGACACTGAA 57.397 29.630 0.00 0.00 38.04 3.02
2075 2094 9.602568 TTGTGTATTTACAAGTTTAGACACTGA 57.397 29.630 0.00 0.00 38.04 3.41
2098 2117 3.761752 ACAAGTTGTAGCACCACTTTTGT 59.238 39.130 6.75 0.24 0.00 2.83
2102 2121 2.210116 CGACAAGTTGTAGCACCACTT 58.790 47.619 8.88 0.00 0.00 3.16
2103 2122 1.865865 CGACAAGTTGTAGCACCACT 58.134 50.000 8.88 0.00 0.00 4.00
2109 2128 1.219522 ACCGTGCGACAAGTTGTAGC 61.220 55.000 27.98 27.98 46.88 3.58
2110 2129 0.506932 CACCGTGCGACAAGTTGTAG 59.493 55.000 8.88 10.30 0.00 2.74
2111 2130 0.179105 ACACCGTGCGACAAGTTGTA 60.179 50.000 8.88 0.00 0.00 2.41
2112 2131 0.179105 TACACCGTGCGACAAGTTGT 60.179 50.000 8.61 8.61 0.00 3.32
2113 2132 1.144969 ATACACCGTGCGACAAGTTG 58.855 50.000 0.00 0.00 0.00 3.16
2115 2134 2.953466 ATATACACCGTGCGACAAGT 57.047 45.000 0.00 0.00 0.00 3.16
2116 2135 2.717519 CGTATATACACCGTGCGACAAG 59.282 50.000 13.22 0.00 0.00 3.16
2117 2136 2.541383 CCGTATATACACCGTGCGACAA 60.541 50.000 13.22 0.00 0.00 3.18
2118 2137 1.002576 CCGTATATACACCGTGCGACA 60.003 52.381 13.22 0.00 0.00 4.35
2119 2138 1.002468 ACCGTATATACACCGTGCGAC 60.002 52.381 13.22 0.00 0.00 5.19
2121 2140 1.401530 CACCGTATATACACCGTGCG 58.598 55.000 13.22 0.00 0.00 5.34
2122 2141 1.134226 GCACCGTATATACACCGTGC 58.866 55.000 23.19 23.19 36.72 5.34
2123 2142 1.338973 AGGCACCGTATATACACCGTG 59.661 52.381 13.22 14.54 0.00 4.94
2124 2143 1.610522 GAGGCACCGTATATACACCGT 59.389 52.381 13.22 3.01 0.00 4.83
2125 2144 1.068055 GGAGGCACCGTATATACACCG 60.068 57.143 13.22 2.42 0.00 4.94
2126 2145 2.738013 GGAGGCACCGTATATACACC 57.262 55.000 13.22 8.10 0.00 4.16
2146 2165 0.105408 AATACGGTGGCATACGGGAC 59.895 55.000 16.80 0.00 34.20 4.46
2147 2166 0.831966 AAATACGGTGGCATACGGGA 59.168 50.000 16.80 6.67 34.20 5.14
2148 2167 0.941542 CAAATACGGTGGCATACGGG 59.058 55.000 16.80 0.00 34.20 5.28
2149 2168 0.306533 GCAAATACGGTGGCATACGG 59.693 55.000 16.80 0.92 35.86 4.02
2150 2169 1.260561 GAGCAAATACGGTGGCATACG 59.739 52.381 12.07 12.07 0.00 3.06
2151 2170 2.544267 GAGAGCAAATACGGTGGCATAC 59.456 50.000 0.00 0.00 0.00 2.39
2152 2171 2.484770 GGAGAGCAAATACGGTGGCATA 60.485 50.000 0.00 0.00 0.00 3.14
2157 2176 0.999406 CACGGAGAGCAAATACGGTG 59.001 55.000 0.00 0.00 0.00 4.94
2161 2180 0.727398 GCCACACGGAGAGCAAATAC 59.273 55.000 0.00 0.00 0.00 1.89
2162 2181 0.323302 TGCCACACGGAGAGCAAATA 59.677 50.000 0.00 0.00 30.97 1.40
2163 2182 0.322816 ATGCCACACGGAGAGCAAAT 60.323 50.000 0.00 0.00 38.99 2.32
2164 2183 1.073025 ATGCCACACGGAGAGCAAA 59.927 52.632 0.00 0.00 38.99 3.68
2165 2184 1.672030 CATGCCACACGGAGAGCAA 60.672 57.895 0.00 0.00 38.99 3.91
2166 2185 2.046988 CATGCCACACGGAGAGCA 60.047 61.111 0.00 0.00 40.00 4.26
2167 2186 2.103042 GTCATGCCACACGGAGAGC 61.103 63.158 0.00 0.00 0.00 4.09
2168 2187 0.738762 CTGTCATGCCACACGGAGAG 60.739 60.000 0.00 0.00 0.00 3.20
2172 2191 2.359107 AGCTGTCATGCCACACGG 60.359 61.111 0.00 0.00 0.00 4.94
2173 2192 2.683859 CCAGCTGTCATGCCACACG 61.684 63.158 13.81 0.00 0.00 4.49
2174 2193 2.986306 GCCAGCTGTCATGCCACAC 61.986 63.158 13.81 0.00 0.00 3.82
2176 2195 3.807538 CGCCAGCTGTCATGCCAC 61.808 66.667 13.81 0.00 0.00 5.01
2179 2198 3.058160 AACCGCCAGCTGTCATGC 61.058 61.111 13.81 7.82 0.00 4.06
2181 2200 2.360350 CCAACCGCCAGCTGTCAT 60.360 61.111 13.81 0.00 0.00 3.06
2182 2201 3.825160 GACCAACCGCCAGCTGTCA 62.825 63.158 13.81 0.00 0.00 3.58
2183 2202 3.050275 GACCAACCGCCAGCTGTC 61.050 66.667 13.81 0.00 0.00 3.51
2184 2203 4.643387 GGACCAACCGCCAGCTGT 62.643 66.667 13.81 0.00 0.00 4.40
2193 2741 1.813513 CACTGATCTGTGGACCAACC 58.186 55.000 21.53 0.00 39.54 3.77
2265 2900 7.364200 CGTCAAATTATCTACCACCACAAAAA 58.636 34.615 0.00 0.00 0.00 1.94
2266 2901 6.568844 GCGTCAAATTATCTACCACCACAAAA 60.569 38.462 0.00 0.00 0.00 2.44
2267 2902 5.106475 GCGTCAAATTATCTACCACCACAAA 60.106 40.000 0.00 0.00 0.00 2.83
2268 2903 4.393680 GCGTCAAATTATCTACCACCACAA 59.606 41.667 0.00 0.00 0.00 3.33
2269 2904 3.936453 GCGTCAAATTATCTACCACCACA 59.064 43.478 0.00 0.00 0.00 4.17
2270 2905 3.000925 CGCGTCAAATTATCTACCACCAC 59.999 47.826 0.00 0.00 0.00 4.16
2271 2906 3.191669 CGCGTCAAATTATCTACCACCA 58.808 45.455 0.00 0.00 0.00 4.17
2272 2907 3.000925 CACGCGTCAAATTATCTACCACC 59.999 47.826 9.86 0.00 0.00 4.61
2273 2908 3.861113 TCACGCGTCAAATTATCTACCAC 59.139 43.478 9.86 0.00 0.00 4.16
2274 2909 4.109766 CTCACGCGTCAAATTATCTACCA 58.890 43.478 9.86 0.00 0.00 3.25
2275 2910 3.489785 CCTCACGCGTCAAATTATCTACC 59.510 47.826 9.86 0.00 0.00 3.18
2276 2911 4.026804 CACCTCACGCGTCAAATTATCTAC 60.027 45.833 9.86 0.00 0.00 2.59
2277 2912 4.109766 CACCTCACGCGTCAAATTATCTA 58.890 43.478 9.86 0.00 0.00 1.98
2278 2913 2.930040 CACCTCACGCGTCAAATTATCT 59.070 45.455 9.86 0.00 0.00 1.98
2279 2914 2.536928 GCACCTCACGCGTCAAATTATC 60.537 50.000 9.86 0.00 0.00 1.75
2280 2915 1.396996 GCACCTCACGCGTCAAATTAT 59.603 47.619 9.86 0.00 0.00 1.28
2281 2916 0.793861 GCACCTCACGCGTCAAATTA 59.206 50.000 9.86 0.00 0.00 1.40
2282 2917 1.574428 GCACCTCACGCGTCAAATT 59.426 52.632 9.86 0.00 0.00 1.82
2283 2918 3.253955 GCACCTCACGCGTCAAAT 58.746 55.556 9.86 0.00 0.00 2.32
2294 2929 1.215382 GAATTTTGGGGCGCACCTC 59.785 57.895 32.18 15.41 40.03 3.85
2295 2930 1.118356 TTGAATTTTGGGGCGCACCT 61.118 50.000 32.18 9.19 40.03 4.00
2296 2931 0.948623 GTTGAATTTTGGGGCGCACC 60.949 55.000 25.59 25.59 39.11 5.01
2297 2932 0.033366 AGTTGAATTTTGGGGCGCAC 59.967 50.000 10.83 4.83 0.00 5.34
2298 2933 0.755686 AAGTTGAATTTTGGGGCGCA 59.244 45.000 10.83 0.00 0.00 6.09
2299 2934 2.734276 TAAGTTGAATTTTGGGGCGC 57.266 45.000 0.00 0.00 0.00 6.53
2300 2935 4.391523 CCAAATAAGTTGAATTTTGGGGCG 59.608 41.667 5.56 0.00 42.74 6.13
2301 2936 5.411361 GTCCAAATAAGTTGAATTTTGGGGC 59.589 40.000 12.01 4.11 45.23 5.80
2302 2937 6.529220 TGTCCAAATAAGTTGAATTTTGGGG 58.471 36.000 12.01 2.57 45.23 4.96
2303 2938 8.096414 AGATGTCCAAATAAGTTGAATTTTGGG 58.904 33.333 12.01 3.08 45.23 4.12
2304 2939 8.928733 CAGATGTCCAAATAAGTTGAATTTTGG 58.071 33.333 6.89 6.89 46.09 3.28
2305 2940 9.695526 TCAGATGTCCAAATAAGTTGAATTTTG 57.304 29.630 0.00 0.00 39.87 2.44
2306 2941 9.918630 CTCAGATGTCCAAATAAGTTGAATTTT 57.081 29.630 0.00 0.00 39.87 1.82
2307 2942 9.082313 ACTCAGATGTCCAAATAAGTTGAATTT 57.918 29.630 0.00 0.00 39.87 1.82
2308 2943 8.641498 ACTCAGATGTCCAAATAAGTTGAATT 57.359 30.769 0.00 0.00 39.87 2.17
2309 2944 9.388506 CTACTCAGATGTCCAAATAAGTTGAAT 57.611 33.333 0.00 0.00 39.87 2.57
2310 2945 7.334421 GCTACTCAGATGTCCAAATAAGTTGAA 59.666 37.037 0.00 0.00 39.87 2.69
2311 2946 6.818644 GCTACTCAGATGTCCAAATAAGTTGA 59.181 38.462 0.00 0.00 39.87 3.18
2312 2947 6.820656 AGCTACTCAGATGTCCAAATAAGTTG 59.179 38.462 0.00 0.00 36.94 3.16
2313 2948 6.951971 AGCTACTCAGATGTCCAAATAAGTT 58.048 36.000 0.00 0.00 0.00 2.66
2314 2949 6.382570 AGAGCTACTCAGATGTCCAAATAAGT 59.617 38.462 0.00 0.00 32.06 2.24
2315 2950 6.815089 AGAGCTACTCAGATGTCCAAATAAG 58.185 40.000 0.00 0.00 32.06 1.73
2316 2951 6.460261 CGAGAGCTACTCAGATGTCCAAATAA 60.460 42.308 11.93 0.00 45.14 1.40
2317 2952 5.009110 CGAGAGCTACTCAGATGTCCAAATA 59.991 44.000 11.93 0.00 45.14 1.40
2318 2953 4.202101 CGAGAGCTACTCAGATGTCCAAAT 60.202 45.833 11.93 0.00 45.14 2.32
2319 2954 3.129462 CGAGAGCTACTCAGATGTCCAAA 59.871 47.826 11.93 0.00 45.14 3.28
2320 2955 2.685388 CGAGAGCTACTCAGATGTCCAA 59.315 50.000 11.93 0.00 45.14 3.53
2321 2956 2.293170 CGAGAGCTACTCAGATGTCCA 58.707 52.381 11.93 0.00 45.14 4.02
2322 2957 1.606668 CCGAGAGCTACTCAGATGTCC 59.393 57.143 11.93 0.00 45.14 4.02
2323 2958 1.001815 GCCGAGAGCTACTCAGATGTC 60.002 57.143 11.93 0.00 45.14 3.06
2324 2959 1.028905 GCCGAGAGCTACTCAGATGT 58.971 55.000 11.93 0.00 45.14 3.06
2325 2960 1.028130 TGCCGAGAGCTACTCAGATG 58.972 55.000 11.93 1.60 45.14 2.90
2326 2961 1.769026 TTGCCGAGAGCTACTCAGAT 58.231 50.000 11.93 0.00 45.14 2.90
2327 2962 1.545841 TTTGCCGAGAGCTACTCAGA 58.454 50.000 11.93 0.00 45.14 3.27
2328 2963 2.370281 TTTTGCCGAGAGCTACTCAG 57.630 50.000 11.93 3.88 45.14 3.35
2329 2964 2.831685 TTTTTGCCGAGAGCTACTCA 57.168 45.000 11.93 0.00 45.14 3.41
2345 2980 5.725362 TGTTTTGACCCGATTTGTCTTTTT 58.275 33.333 0.00 0.00 33.83 1.94
2346 2981 5.105513 ACTGTTTTGACCCGATTTGTCTTTT 60.106 36.000 0.00 0.00 33.83 2.27
2347 2982 4.401202 ACTGTTTTGACCCGATTTGTCTTT 59.599 37.500 0.00 0.00 33.83 2.52
2348 2983 3.951680 ACTGTTTTGACCCGATTTGTCTT 59.048 39.130 0.00 0.00 33.83 3.01
2349 2984 3.315191 CACTGTTTTGACCCGATTTGTCT 59.685 43.478 0.00 0.00 33.83 3.41
2350 2985 3.628017 CACTGTTTTGACCCGATTTGTC 58.372 45.455 0.00 0.00 0.00 3.18
2351 2986 2.223711 GCACTGTTTTGACCCGATTTGT 60.224 45.455 0.00 0.00 0.00 2.83
2352 2987 2.393764 GCACTGTTTTGACCCGATTTG 58.606 47.619 0.00 0.00 0.00 2.32
2353 2988 1.001815 CGCACTGTTTTGACCCGATTT 60.002 47.619 0.00 0.00 0.00 2.17
2354 2989 0.591170 CGCACTGTTTTGACCCGATT 59.409 50.000 0.00 0.00 0.00 3.34
2355 2990 0.534203 ACGCACTGTTTTGACCCGAT 60.534 50.000 0.00 0.00 0.00 4.18
2356 2991 0.104487 TACGCACTGTTTTGACCCGA 59.896 50.000 0.00 0.00 0.00 5.14
2357 2992 0.938713 TTACGCACTGTTTTGACCCG 59.061 50.000 0.00 0.00 0.00 5.28
2358 2993 2.097791 TGTTTACGCACTGTTTTGACCC 59.902 45.455 0.00 0.00 0.00 4.46
2359 2994 3.181504 ACTGTTTACGCACTGTTTTGACC 60.182 43.478 0.00 0.00 0.00 4.02
2360 2995 4.011058 ACTGTTTACGCACTGTTTTGAC 57.989 40.909 0.00 0.00 0.00 3.18
2361 2996 5.798015 TTACTGTTTACGCACTGTTTTGA 57.202 34.783 0.00 0.00 31.81 2.69
2362 2997 5.795939 TGTTTACTGTTTACGCACTGTTTTG 59.204 36.000 0.00 0.00 31.81 2.44
2363 2998 5.940595 TGTTTACTGTTTACGCACTGTTTT 58.059 33.333 0.00 0.00 31.81 2.43
2364 2999 5.548706 TGTTTACTGTTTACGCACTGTTT 57.451 34.783 0.00 0.00 31.81 2.83
2365 3000 5.744666 ATGTTTACTGTTTACGCACTGTT 57.255 34.783 0.00 0.00 31.81 3.16
2366 3001 5.744666 AATGTTTACTGTTTACGCACTGT 57.255 34.783 0.00 0.00 33.75 3.55
2367 3002 7.444558 AAAAATGTTTACTGTTTACGCACTG 57.555 32.000 0.00 0.00 0.00 3.66
2368 3003 8.182881 TGTAAAAATGTTTACTGTTTACGCACT 58.817 29.630 17.45 0.00 46.29 4.40
2369 3004 8.254470 GTGTAAAAATGTTTACTGTTTACGCAC 58.746 33.333 17.45 3.04 46.29 5.34
2370 3005 7.966753 TGTGTAAAAATGTTTACTGTTTACGCA 59.033 29.630 17.45 13.76 46.29 5.24
2371 3006 8.254470 GTGTGTAAAAATGTTTACTGTTTACGC 58.746 33.333 17.45 10.56 46.29 4.42
2372 3007 9.493206 AGTGTGTAAAAATGTTTACTGTTTACG 57.507 29.630 17.45 0.00 46.29 3.18
2375 3010 9.567848 CAGAGTGTGTAAAAATGTTTACTGTTT 57.432 29.630 17.45 3.76 46.29 2.83
2376 3011 8.952278 TCAGAGTGTGTAAAAATGTTTACTGTT 58.048 29.630 17.45 3.46 46.29 3.16
2377 3012 8.500753 TCAGAGTGTGTAAAAATGTTTACTGT 57.499 30.769 17.45 0.00 46.29 3.55
2378 3013 9.950680 AATCAGAGTGTGTAAAAATGTTTACTG 57.049 29.630 17.45 8.05 46.29 2.74
2382 3017 9.651913 ACAAAATCAGAGTGTGTAAAAATGTTT 57.348 25.926 0.00 0.00 0.00 2.83
2383 3018 9.301153 GACAAAATCAGAGTGTGTAAAAATGTT 57.699 29.630 0.00 0.00 0.00 2.71
2384 3019 8.686334 AGACAAAATCAGAGTGTGTAAAAATGT 58.314 29.630 0.00 0.00 0.00 2.71
2385 3020 9.520204 AAGACAAAATCAGAGTGTGTAAAAATG 57.480 29.630 0.00 0.00 0.00 2.32
2387 3022 9.921637 AAAAGACAAAATCAGAGTGTGTAAAAA 57.078 25.926 0.00 0.00 0.00 1.94
2388 3023 9.921637 AAAAAGACAAAATCAGAGTGTGTAAAA 57.078 25.926 0.00 0.00 0.00 1.52
2411 3046 2.146342 CTGAGAAGCTCTCGGCAAAAA 58.854 47.619 8.47 0.00 46.25 1.94
2412 3047 1.344438 TCTGAGAAGCTCTCGGCAAAA 59.656 47.619 13.94 0.00 46.80 2.44
2413 3048 0.969149 TCTGAGAAGCTCTCGGCAAA 59.031 50.000 13.94 0.00 46.80 3.68
2414 3049 1.134877 CATCTGAGAAGCTCTCGGCAA 60.135 52.381 13.94 2.94 46.80 4.52
2415 3050 0.459078 CATCTGAGAAGCTCTCGGCA 59.541 55.000 13.94 6.78 46.80 5.69
2416 3051 0.875474 GCATCTGAGAAGCTCTCGGC 60.875 60.000 13.94 8.91 46.80 5.54
2417 3052 1.269206 GAGCATCTGAGAAGCTCTCGG 60.269 57.143 26.93 13.02 45.94 4.63
2418 3053 2.124011 GAGCATCTGAGAAGCTCTCG 57.876 55.000 26.93 0.00 45.94 4.04
2422 3057 4.193090 CTCATTTGAGCATCTGAGAAGCT 58.807 43.478 12.45 12.45 39.36 3.74
2423 3058 3.940221 ACTCATTTGAGCATCTGAGAAGC 59.060 43.478 0.68 0.68 45.79 3.86
2424 3059 5.642491 TCAACTCATTTGAGCATCTGAGAAG 59.358 40.000 7.48 0.00 45.79 2.85
2425 3060 5.554070 TCAACTCATTTGAGCATCTGAGAA 58.446 37.500 7.48 1.40 45.79 2.87
2426 3061 5.156608 TCAACTCATTTGAGCATCTGAGA 57.843 39.130 7.48 0.00 45.79 3.27
2427 3062 5.874895 TTCAACTCATTTGAGCATCTGAG 57.125 39.130 7.48 7.75 45.22 3.35
2428 3063 6.829229 AATTCAACTCATTTGAGCATCTGA 57.171 33.333 7.48 3.49 45.22 3.27
2429 3064 7.148639 CCAAAATTCAACTCATTTGAGCATCTG 60.149 37.037 7.48 1.37 45.22 2.90
2430 3065 6.872020 CCAAAATTCAACTCATTTGAGCATCT 59.128 34.615 7.48 0.00 45.22 2.90
2431 3066 6.091713 CCCAAAATTCAACTCATTTGAGCATC 59.908 38.462 7.48 0.00 45.22 3.91
2432 3067 5.935789 CCCAAAATTCAACTCATTTGAGCAT 59.064 36.000 7.48 0.00 45.22 3.79
2433 3068 5.299148 CCCAAAATTCAACTCATTTGAGCA 58.701 37.500 7.48 0.00 45.22 4.26
2434 3069 4.692155 CCCCAAAATTCAACTCATTTGAGC 59.308 41.667 7.48 0.00 45.22 4.26
2435 3070 5.697633 CACCCCAAAATTCAACTCATTTGAG 59.302 40.000 6.03 6.03 45.22 3.02
2436 3071 5.609423 CACCCCAAAATTCAACTCATTTGA 58.391 37.500 0.00 0.00 42.83 2.69
2437 3072 4.213906 GCACCCCAAAATTCAACTCATTTG 59.786 41.667 0.00 0.00 36.42 2.32
2438 3073 4.141528 TGCACCCCAAAATTCAACTCATTT 60.142 37.500 0.00 0.00 0.00 2.32
2439 3074 3.390639 TGCACCCCAAAATTCAACTCATT 59.609 39.130 0.00 0.00 0.00 2.57
2440 3075 2.971330 TGCACCCCAAAATTCAACTCAT 59.029 40.909 0.00 0.00 0.00 2.90
2441 3076 2.102252 GTGCACCCCAAAATTCAACTCA 59.898 45.455 5.22 0.00 0.00 3.41
2442 3077 2.547855 GGTGCACCCCAAAATTCAACTC 60.548 50.000 26.31 0.00 0.00 3.01
2443 3078 1.416030 GGTGCACCCCAAAATTCAACT 59.584 47.619 26.31 0.00 0.00 3.16
2444 3079 1.416030 AGGTGCACCCCAAAATTCAAC 59.584 47.619 32.29 2.28 36.42 3.18
2445 3080 1.691434 GAGGTGCACCCCAAAATTCAA 59.309 47.619 32.29 0.00 36.42 2.69
2446 3081 1.337118 GAGGTGCACCCCAAAATTCA 58.663 50.000 32.29 0.00 36.42 2.57
2447 3082 1.000843 GTGAGGTGCACCCCAAAATTC 59.999 52.381 32.29 20.70 41.78 2.17
2448 3083 1.047801 GTGAGGTGCACCCCAAAATT 58.952 50.000 32.29 12.16 41.78 1.82
2449 3084 1.178534 CGTGAGGTGCACCCCAAAAT 61.179 55.000 32.29 13.00 44.85 1.82
2450 3085 1.826054 CGTGAGGTGCACCCCAAAA 60.826 57.895 32.29 10.77 44.85 2.44
2451 3086 2.203280 CGTGAGGTGCACCCCAAA 60.203 61.111 32.29 12.68 44.85 3.28
2452 3087 4.947147 GCGTGAGGTGCACCCCAA 62.947 66.667 32.29 15.39 44.85 4.12
2456 3091 4.961511 TGACGCGTGAGGTGCACC 62.962 66.667 29.22 29.22 44.85 5.01
2457 3092 1.841663 ATTTGACGCGTGAGGTGCAC 61.842 55.000 20.70 8.80 44.21 4.57
2458 3093 1.163420 AATTTGACGCGTGAGGTGCA 61.163 50.000 20.70 3.62 0.00 4.57
2459 3094 0.793861 TAATTTGACGCGTGAGGTGC 59.206 50.000 20.70 0.06 0.00 5.01
2460 3095 2.930040 AGATAATTTGACGCGTGAGGTG 59.070 45.455 20.70 0.00 0.00 4.00
2461 3096 3.247006 AGATAATTTGACGCGTGAGGT 57.753 42.857 20.70 0.00 0.00 3.85
2462 3097 3.489785 GGTAGATAATTTGACGCGTGAGG 59.510 47.826 20.70 0.00 0.00 3.86
2463 3098 4.026804 GTGGTAGATAATTTGACGCGTGAG 60.027 45.833 20.70 0.00 0.00 3.51
2464 3099 3.861113 GTGGTAGATAATTTGACGCGTGA 59.139 43.478 20.70 4.74 0.00 4.35
2465 3100 3.000925 GGTGGTAGATAATTTGACGCGTG 59.999 47.826 20.70 0.00 0.00 5.34
2466 3101 3.192466 GGTGGTAGATAATTTGACGCGT 58.808 45.455 13.85 13.85 0.00 6.01
2467 3102 3.000925 GTGGTGGTAGATAATTTGACGCG 59.999 47.826 3.53 3.53 0.00 6.01
2468 3103 3.936453 TGTGGTGGTAGATAATTTGACGC 59.064 43.478 0.00 0.00 0.00 5.19
2469 3104 6.489127 TTTGTGGTGGTAGATAATTTGACG 57.511 37.500 0.00 0.00 0.00 4.35
2538 3184 1.621814 AGCTACACCCACGCTTAGAAA 59.378 47.619 0.00 0.00 0.00 2.52
2539 3185 1.067142 CAGCTACACCCACGCTTAGAA 60.067 52.381 0.00 0.00 0.00 2.10
2540 3186 0.530744 CAGCTACACCCACGCTTAGA 59.469 55.000 0.00 0.00 0.00 2.10
2541 3187 0.530744 TCAGCTACACCCACGCTTAG 59.469 55.000 0.00 0.00 0.00 2.18
2543 3189 1.293498 CTCAGCTACACCCACGCTT 59.707 57.895 0.00 0.00 0.00 4.68
2544 3190 2.973899 CTCAGCTACACCCACGCT 59.026 61.111 0.00 0.00 0.00 5.07
2545 3191 2.815647 GCTCAGCTACACCCACGC 60.816 66.667 0.00 0.00 0.00 5.34
2546 3192 2.125512 GGCTCAGCTACACCCACG 60.126 66.667 0.00 0.00 0.00 4.94
2547 3193 2.269241 GGGCTCAGCTACACCCAC 59.731 66.667 11.33 0.00 42.33 4.61
2548 3194 3.390521 CGGGCTCAGCTACACCCA 61.391 66.667 15.36 0.00 42.97 4.51
2550 3196 4.162690 CCCGGGCTCAGCTACACC 62.163 72.222 8.08 0.00 0.00 4.16
2551 3197 3.391382 ACCCGGGCTCAGCTACAC 61.391 66.667 24.08 0.00 0.00 2.90
2552 3198 3.390521 CACCCGGGCTCAGCTACA 61.391 66.667 24.08 0.00 0.00 2.74
2553 3199 4.840005 GCACCCGGGCTCAGCTAC 62.840 72.222 24.08 0.00 0.00 3.58
2557 3203 1.971505 TAATCTGCACCCGGGCTCAG 61.972 60.000 27.84 27.84 34.04 3.35
2558 3204 1.971505 CTAATCTGCACCCGGGCTCA 61.972 60.000 24.08 17.97 34.04 4.26
2559 3205 1.227674 CTAATCTGCACCCGGGCTC 60.228 63.158 24.08 13.62 34.04 4.70
2561 3207 2.902343 GCTAATCTGCACCCGGGC 60.902 66.667 24.08 8.36 0.00 6.13
2562 3208 2.203209 GGCTAATCTGCACCCGGG 60.203 66.667 22.25 22.25 34.04 5.73
2563 3209 2.588877 CGGCTAATCTGCACCCGG 60.589 66.667 0.00 0.00 35.54 5.73
2570 3216 5.679734 ATAATTTGAGTGCGGCTAATCTG 57.320 39.130 0.00 0.00 0.00 2.90
2571 3217 5.701290 GGTATAATTTGAGTGCGGCTAATCT 59.299 40.000 0.00 0.00 0.00 2.40
2572 3218 5.701290 AGGTATAATTTGAGTGCGGCTAATC 59.299 40.000 0.00 0.00 0.00 1.75
2574 3220 5.031066 AGGTATAATTTGAGTGCGGCTAA 57.969 39.130 0.00 0.00 0.00 3.09
2575 3221 4.682778 AGGTATAATTTGAGTGCGGCTA 57.317 40.909 0.00 0.00 0.00 3.93
2576 3222 3.560636 AGGTATAATTTGAGTGCGGCT 57.439 42.857 0.00 0.00 0.00 5.52
2577 3223 5.744666 TTTAGGTATAATTTGAGTGCGGC 57.255 39.130 0.00 0.00 0.00 6.53
2578 3224 6.668323 CCATTTAGGTATAATTTGAGTGCGG 58.332 40.000 0.00 0.00 0.00 5.69
2579 3225 6.142817 GCCATTTAGGTATAATTTGAGTGCG 58.857 40.000 0.00 0.00 40.61 5.34
2580 3226 7.038154 TGCCATTTAGGTATAATTTGAGTGC 57.962 36.000 0.00 0.00 40.61 4.40
2583 3229 8.017373 CGTGATGCCATTTAGGTATAATTTGAG 58.983 37.037 0.00 0.00 43.42 3.02
2584 3230 7.040755 CCGTGATGCCATTTAGGTATAATTTGA 60.041 37.037 0.00 0.00 43.42 2.69
2585 3231 7.083858 CCGTGATGCCATTTAGGTATAATTTG 58.916 38.462 0.00 0.00 43.42 2.32
2586 3232 6.208599 CCCGTGATGCCATTTAGGTATAATTT 59.791 38.462 0.00 0.00 43.42 1.82
2587 3233 5.710099 CCCGTGATGCCATTTAGGTATAATT 59.290 40.000 0.00 0.00 43.42 1.40
2588 3234 5.253330 CCCGTGATGCCATTTAGGTATAAT 58.747 41.667 0.00 0.00 43.42 1.28
2591 3473 2.814097 GCCCGTGATGCCATTTAGGTAT 60.814 50.000 0.00 0.00 46.36 2.73
2605 3487 8.740123 TTAAATTAATTATTCTCTGCCCGTGA 57.260 30.769 0.01 0.00 0.00 4.35
2629 3511 5.009610 AGTTGCATTGGTGAGAAATACGTTT 59.990 36.000 0.00 0.00 0.00 3.60
2635 3517 8.806146 ACTAAATTAGTTGCATTGGTGAGAAAT 58.194 29.630 0.00 0.00 34.86 2.17
2671 3553 6.428159 GGTTAGCAAGACAAGGTATATCATGG 59.572 42.308 0.00 0.00 0.00 3.66
2722 3604 6.985645 TCATTCTTATTATGTGCCATTTTGCC 59.014 34.615 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.