Multiple sequence alignment - TraesCS3B01G360800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G360800 chr3B 100.000 1863 0 0 1 1863 572676006 572677868 0.000000e+00 3441.0
1 TraesCS3B01G360800 chr3B 90.497 1568 91 16 1 1518 77701888 77703447 0.000000e+00 2017.0
2 TraesCS3B01G360800 chr3B 89.554 1436 89 12 139 1521 12308536 12309963 0.000000e+00 1764.0
3 TraesCS3B01G360800 chr3B 100.000 174 0 0 2031 2204 572678036 572678209 2.730000e-84 322.0
4 TraesCS3B01G360800 chr1B 97.988 1541 10 1 1 1520 97369000 97370540 0.000000e+00 2654.0
5 TraesCS3B01G360800 chr1B 97.426 1554 15 4 1 1533 636493396 636491847 0.000000e+00 2625.0
6 TraesCS3B01G360800 chr1B 97.211 1542 22 1 1 1521 636491070 636489529 0.000000e+00 2590.0
7 TraesCS3B01G360800 chr1B 92.208 77 6 0 2090 2166 397816052 397815976 2.310000e-20 110.0
8 TraesCS3B01G360800 chr4A 96.561 1541 14 2 1 1520 716943653 716945175 0.000000e+00 2516.0
9 TraesCS3B01G360800 chr7B 90.337 1573 83 16 1 1521 290955188 290953633 0.000000e+00 1999.0
10 TraesCS3B01G360800 chr7B 89.470 1567 105 19 1 1518 692826354 692827909 0.000000e+00 1925.0
11 TraesCS3B01G360800 chr7B 88.181 1303 93 23 1 1252 692793642 692794934 0.000000e+00 1496.0
12 TraesCS3B01G360800 chr7B 92.290 882 42 9 658 1520 226424060 226424934 0.000000e+00 1229.0
13 TraesCS3B01G360800 chr7B 90.400 375 25 2 1 364 226422650 226423024 1.180000e-132 483.0
14 TraesCS3B01G360800 chr7B 94.170 223 13 0 1 223 692796124 692796346 7.540000e-90 340.0
15 TraesCS3B01G360800 chr7B 94.667 75 4 0 2090 2164 57588583 57588657 1.380000e-22 117.0
16 TraesCS3B01G360800 chr5A 90.261 1571 93 27 1 1520 33169850 33171411 0.000000e+00 1999.0
17 TraesCS3B01G360800 chr4B 88.256 1439 93 16 142 1521 622489730 622488309 0.000000e+00 1652.0
18 TraesCS3B01G360800 chr4B 88.881 1340 88 17 220 1520 142428844 142427527 0.000000e+00 1592.0
19 TraesCS3B01G360800 chr4B 92.967 583 23 8 958 1522 604143941 604144523 0.000000e+00 833.0
20 TraesCS3B01G360800 chr4B 86.957 92 9 3 2085 2174 237272804 237272714 1.390000e-17 100.0
21 TraesCS3B01G360800 chrUn 87.742 1395 110 15 1 1343 278600479 278599094 0.000000e+00 1572.0
22 TraesCS3B01G360800 chr7A 92.948 1021 41 12 520 1520 709417188 709418197 0.000000e+00 1458.0
23 TraesCS3B01G360800 chr5B 93.074 592 22 9 958 1530 492815978 492815387 0.000000e+00 848.0
24 TraesCS3B01G360800 chr5B 92.683 82 6 0 2090 2171 702514342 702514423 3.840000e-23 119.0
25 TraesCS3B01G360800 chr5B 92.105 76 6 0 2090 2165 437570754 437570679 8.320000e-20 108.0
26 TraesCS3B01G360800 chr5B 84.615 91 8 3 366 451 304658042 304657953 3.900000e-13 86.1
27 TraesCS3B01G360800 chr5B 94.000 50 3 0 360 409 369616564 369616613 2.350000e-10 76.8
28 TraesCS3B01G360800 chr5B 94.000 50 3 0 360 409 486734830 486734781 2.350000e-10 76.8
29 TraesCS3B01G360800 chr3A 92.662 586 25 8 958 1525 459622290 459621705 0.000000e+00 828.0
30 TraesCS3B01G360800 chr3A 88.423 596 36 9 1 563 675317719 675317124 0.000000e+00 688.0
31 TraesCS3B01G360800 chr2A 92.088 594 27 6 958 1533 38299760 38300351 0.000000e+00 819.0
32 TraesCS3B01G360800 chr2A 92.922 551 20 5 1002 1534 442717422 442716873 0.000000e+00 784.0
33 TraesCS3B01G360800 chr2A 91.463 82 6 1 2090 2171 394759736 394759656 6.430000e-21 111.0
34 TraesCS3B01G360800 chr2A 93.421 76 4 1 2090 2165 406450452 406450526 6.430000e-21 111.0
35 TraesCS3B01G360800 chr6A 94.170 223 11 1 1 223 224099035 224098815 2.710000e-89 339.0
36 TraesCS3B01G360800 chr4D 87.912 91 8 3 2085 2173 215459633 215459544 1.080000e-18 104.0
37 TraesCS3B01G360800 chr1A 89.412 85 5 4 2090 2172 225509496 225509578 1.080000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G360800 chr3B 572676006 572678209 2203 False 1881.5 3441 100.0000 1 2204 2 chr3B.!!$F3 2203
1 TraesCS3B01G360800 chr3B 77701888 77703447 1559 False 2017.0 2017 90.4970 1 1518 1 chr3B.!!$F2 1517
2 TraesCS3B01G360800 chr3B 12308536 12309963 1427 False 1764.0 1764 89.5540 139 1521 1 chr3B.!!$F1 1382
3 TraesCS3B01G360800 chr1B 97369000 97370540 1540 False 2654.0 2654 97.9880 1 1520 1 chr1B.!!$F1 1519
4 TraesCS3B01G360800 chr1B 636489529 636493396 3867 True 2607.5 2625 97.3185 1 1533 2 chr1B.!!$R2 1532
5 TraesCS3B01G360800 chr4A 716943653 716945175 1522 False 2516.0 2516 96.5610 1 1520 1 chr4A.!!$F1 1519
6 TraesCS3B01G360800 chr7B 290953633 290955188 1555 True 1999.0 1999 90.3370 1 1521 1 chr7B.!!$R1 1520
7 TraesCS3B01G360800 chr7B 692826354 692827909 1555 False 1925.0 1925 89.4700 1 1518 1 chr7B.!!$F2 1517
8 TraesCS3B01G360800 chr7B 692793642 692796346 2704 False 918.0 1496 91.1755 1 1252 2 chr7B.!!$F4 1251
9 TraesCS3B01G360800 chr7B 226422650 226424934 2284 False 856.0 1229 91.3450 1 1520 2 chr7B.!!$F3 1519
10 TraesCS3B01G360800 chr5A 33169850 33171411 1561 False 1999.0 1999 90.2610 1 1520 1 chr5A.!!$F1 1519
11 TraesCS3B01G360800 chr4B 622488309 622489730 1421 True 1652.0 1652 88.2560 142 1521 1 chr4B.!!$R3 1379
12 TraesCS3B01G360800 chr4B 142427527 142428844 1317 True 1592.0 1592 88.8810 220 1520 1 chr4B.!!$R1 1300
13 TraesCS3B01G360800 chr4B 604143941 604144523 582 False 833.0 833 92.9670 958 1522 1 chr4B.!!$F1 564
14 TraesCS3B01G360800 chrUn 278599094 278600479 1385 True 1572.0 1572 87.7420 1 1343 1 chrUn.!!$R1 1342
15 TraesCS3B01G360800 chr7A 709417188 709418197 1009 False 1458.0 1458 92.9480 520 1520 1 chr7A.!!$F1 1000
16 TraesCS3B01G360800 chr5B 492815387 492815978 591 True 848.0 848 93.0740 958 1530 1 chr5B.!!$R4 572
17 TraesCS3B01G360800 chr3A 459621705 459622290 585 True 828.0 828 92.6620 958 1525 1 chr3A.!!$R1 567
18 TraesCS3B01G360800 chr3A 675317124 675317719 595 True 688.0 688 88.4230 1 563 1 chr3A.!!$R2 562
19 TraesCS3B01G360800 chr2A 38299760 38300351 591 False 819.0 819 92.0880 958 1533 1 chr2A.!!$F1 575
20 TraesCS3B01G360800 chr2A 442716873 442717422 549 True 784.0 784 92.9220 1002 1534 1 chr2A.!!$R2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 164 6.01594 GGCAACCTAAGATAATCCCAAATCTG 60.016 42.308 0.0 0.0 32.79 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 2796 0.036105 TACCCTCGTCGTGTAGAGCA 60.036 55.0 0.0 0.0 33.39 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 164 6.015940 GGCAACCTAAGATAATCCCAAATCTG 60.016 42.308 0.00 0.00 32.79 2.90
462 510 7.786178 TCACTCATTTTACACCATATGTAGC 57.214 36.000 1.24 0.00 44.68 3.58
1051 1821 1.141881 GTGGATGGAGTCGTCGCAT 59.858 57.895 0.00 0.00 0.00 4.73
1543 2357 9.965902 AGATGGATTAGTATTTCAGAAACAAGT 57.034 29.630 0.00 0.00 0.00 3.16
1546 2360 8.296713 TGGATTAGTATTTCAGAAACAAGTTGC 58.703 33.333 1.81 0.00 0.00 4.17
1547 2361 7.755373 GGATTAGTATTTCAGAAACAAGTTGCC 59.245 37.037 1.81 0.00 0.00 4.52
1548 2362 7.817418 TTAGTATTTCAGAAACAAGTTGCCT 57.183 32.000 1.81 0.00 0.00 4.75
1549 2363 6.319141 AGTATTTCAGAAACAAGTTGCCTC 57.681 37.500 1.81 0.00 0.00 4.70
1550 2364 5.827797 AGTATTTCAGAAACAAGTTGCCTCA 59.172 36.000 1.81 0.00 0.00 3.86
1554 2368 6.707440 TTCAGAAACAAGTTGCCTCAAATA 57.293 33.333 1.81 0.00 0.00 1.40
1555 2369 6.899393 TCAGAAACAAGTTGCCTCAAATAT 57.101 33.333 1.81 0.00 0.00 1.28
1556 2370 6.680810 TCAGAAACAAGTTGCCTCAAATATG 58.319 36.000 1.81 0.00 0.00 1.78
1557 2371 5.865552 CAGAAACAAGTTGCCTCAAATATGG 59.134 40.000 1.81 0.00 0.00 2.74
1558 2372 5.539955 AGAAACAAGTTGCCTCAAATATGGT 59.460 36.000 1.81 0.00 0.00 3.55
1559 2373 4.789012 ACAAGTTGCCTCAAATATGGTG 57.211 40.909 1.81 0.00 0.00 4.17
1560 2374 3.511146 ACAAGTTGCCTCAAATATGGTGG 59.489 43.478 1.81 0.00 0.00 4.61
1561 2375 2.738743 AGTTGCCTCAAATATGGTGGG 58.261 47.619 0.00 0.00 0.00 4.61
1562 2376 2.042979 AGTTGCCTCAAATATGGTGGGT 59.957 45.455 0.00 0.00 0.00 4.51
1570 2751 6.937465 GCCTCAAATATGGTGGGTTTTTAAAA 59.063 34.615 0.00 0.00 0.00 1.52
1581 2762 8.731605 TGGTGGGTTTTTAAAAGAAAATCAAAC 58.268 29.630 0.14 0.00 32.52 2.93
1593 2774 9.822185 AAAAGAAAATCAAACTAGCAAAGTGAT 57.178 25.926 0.00 0.00 38.88 3.06
1596 2777 8.800332 AGAAAATCAAACTAGCAAAGTGATGAT 58.200 29.630 11.71 11.71 42.79 2.45
1628 2809 4.896562 TTGTAAATTGCTCTACACGACG 57.103 40.909 0.00 0.00 0.00 5.12
1629 2810 4.163458 TGTAAATTGCTCTACACGACGA 57.837 40.909 0.00 0.00 0.00 4.20
1630 2811 4.163552 TGTAAATTGCTCTACACGACGAG 58.836 43.478 0.00 0.00 0.00 4.18
1631 2812 2.279582 AATTGCTCTACACGACGAGG 57.720 50.000 0.00 0.00 0.00 4.63
1632 2813 0.456221 ATTGCTCTACACGACGAGGG 59.544 55.000 0.00 0.00 0.00 4.30
1633 2814 0.892358 TTGCTCTACACGACGAGGGT 60.892 55.000 0.00 0.00 41.15 4.34
1634 2815 0.036105 TGCTCTACACGACGAGGGTA 60.036 55.000 0.00 0.24 37.78 3.69
1635 2816 0.376502 GCTCTACACGACGAGGGTAC 59.623 60.000 0.00 0.00 37.78 3.34
1636 2817 1.730501 CTCTACACGACGAGGGTACA 58.269 55.000 0.00 0.00 37.78 2.90
1637 2818 2.079158 CTCTACACGACGAGGGTACAA 58.921 52.381 0.00 0.00 37.78 2.41
1638 2819 2.681848 CTCTACACGACGAGGGTACAAT 59.318 50.000 0.00 0.00 37.78 2.71
1639 2820 3.084039 TCTACACGACGAGGGTACAATT 58.916 45.455 0.00 0.00 37.78 2.32
1640 2821 2.825861 ACACGACGAGGGTACAATTT 57.174 45.000 0.00 0.00 32.42 1.82
1641 2822 3.940209 ACACGACGAGGGTACAATTTA 57.060 42.857 0.00 0.00 32.42 1.40
1642 2823 4.460948 ACACGACGAGGGTACAATTTAT 57.539 40.909 0.00 0.00 32.42 1.40
1643 2824 4.824289 ACACGACGAGGGTACAATTTATT 58.176 39.130 0.00 0.00 32.42 1.40
1644 2825 5.240121 ACACGACGAGGGTACAATTTATTT 58.760 37.500 0.00 0.00 32.42 1.40
1645 2826 6.397272 ACACGACGAGGGTACAATTTATTTA 58.603 36.000 0.00 0.00 32.42 1.40
1646 2827 7.043565 ACACGACGAGGGTACAATTTATTTAT 58.956 34.615 0.00 0.00 32.42 1.40
1647 2828 7.223387 ACACGACGAGGGTACAATTTATTTATC 59.777 37.037 0.00 0.00 32.42 1.75
1648 2829 7.437267 CACGACGAGGGTACAATTTATTTATCT 59.563 37.037 0.00 0.00 0.00 1.98
1649 2830 7.983484 ACGACGAGGGTACAATTTATTTATCTT 59.017 33.333 0.00 0.00 0.00 2.40
1650 2831 8.823818 CGACGAGGGTACAATTTATTTATCTTT 58.176 33.333 0.00 0.00 0.00 2.52
1651 2832 9.931210 GACGAGGGTACAATTTATTTATCTTTG 57.069 33.333 0.00 0.00 0.00 2.77
1652 2833 9.457436 ACGAGGGTACAATTTATTTATCTTTGT 57.543 29.630 0.00 0.00 35.00 2.83
1656 2837 9.961265 GGGTACAATTTATTTATCTTTGTAGGC 57.039 33.333 0.00 0.00 34.46 3.93
1661 2842 9.438291 CAATTTATTTATCTTTGTAGGCAGACG 57.562 33.333 0.00 0.00 0.00 4.18
1662 2843 7.548196 TTTATTTATCTTTGTAGGCAGACGG 57.452 36.000 0.00 0.00 0.00 4.79
1663 2844 3.536956 TTATCTTTGTAGGCAGACGGG 57.463 47.619 0.00 0.00 0.00 5.28
1664 2845 0.541863 ATCTTTGTAGGCAGACGGGG 59.458 55.000 0.00 0.00 0.00 5.73
1665 2846 1.078426 CTTTGTAGGCAGACGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
1666 2847 1.838073 CTTTGTAGGCAGACGGGGGT 61.838 60.000 0.00 0.00 0.00 4.95
1667 2848 0.544833 TTTGTAGGCAGACGGGGGTA 60.545 55.000 0.00 0.00 0.00 3.69
1668 2849 0.974010 TTGTAGGCAGACGGGGGTAG 60.974 60.000 0.00 0.00 0.00 3.18
1669 2850 2.443390 TAGGCAGACGGGGGTAGC 60.443 66.667 0.00 0.00 0.00 3.58
1672 2853 3.480133 GCAGACGGGGGTAGCCAT 61.480 66.667 14.06 0.00 0.00 4.40
1673 2854 3.043999 GCAGACGGGGGTAGCCATT 62.044 63.158 14.06 0.00 0.00 3.16
1674 2855 1.607612 CAGACGGGGGTAGCCATTT 59.392 57.895 14.06 0.00 0.00 2.32
1675 2856 0.834612 CAGACGGGGGTAGCCATTTA 59.165 55.000 14.06 0.00 0.00 1.40
1676 2857 1.129058 AGACGGGGGTAGCCATTTAG 58.871 55.000 14.06 1.26 0.00 1.85
1677 2858 0.108019 GACGGGGGTAGCCATTTAGG 59.892 60.000 14.06 0.00 41.84 2.69
1678 2859 0.622446 ACGGGGGTAGCCATTTAGGT 60.622 55.000 14.06 0.00 40.61 3.08
1680 2861 1.770061 CGGGGGTAGCCATTTAGGTTA 59.230 52.381 14.06 0.00 40.61 2.85
1685 2866 4.647853 GGGGTAGCCATTTAGGTTAAAAGG 59.352 45.833 14.06 0.00 39.01 3.11
1687 2868 5.126545 GGGTAGCCATTTAGGTTAAAAGGTG 59.873 44.000 5.96 0.00 38.44 4.00
1688 2869 5.713389 GGTAGCCATTTAGGTTAAAAGGTGT 59.287 40.000 5.16 0.00 38.44 4.16
1689 2870 6.209986 GGTAGCCATTTAGGTTAAAAGGTGTT 59.790 38.462 5.16 0.00 38.44 3.32
1691 2872 7.223260 AGCCATTTAGGTTAAAAGGTGTTAC 57.777 36.000 5.16 0.00 38.44 2.50
1773 2999 0.320771 GCTTCAAGCAGGACCGAAGA 60.321 55.000 3.89 0.00 41.89 2.87
1775 3001 1.001406 CTTCAAGCAGGACCGAAGACT 59.999 52.381 1.00 0.00 37.63 3.24
1777 3003 2.457598 TCAAGCAGGACCGAAGACTAT 58.542 47.619 0.00 0.00 0.00 2.12
1778 3004 3.628008 TCAAGCAGGACCGAAGACTATA 58.372 45.455 0.00 0.00 0.00 1.31
1779 3005 4.021229 TCAAGCAGGACCGAAGACTATAA 58.979 43.478 0.00 0.00 0.00 0.98
1780 3006 4.098044 TCAAGCAGGACCGAAGACTATAAG 59.902 45.833 0.00 0.00 0.00 1.73
1781 3007 3.633418 AGCAGGACCGAAGACTATAAGT 58.367 45.455 0.00 0.00 0.00 2.24
1782 3008 4.024670 AGCAGGACCGAAGACTATAAGTT 58.975 43.478 0.00 0.00 0.00 2.66
1783 3009 5.198965 AGCAGGACCGAAGACTATAAGTTA 58.801 41.667 0.00 0.00 0.00 2.24
1784 3010 5.655532 AGCAGGACCGAAGACTATAAGTTAA 59.344 40.000 0.00 0.00 0.00 2.01
1785 3011 5.978322 GCAGGACCGAAGACTATAAGTTAAG 59.022 44.000 0.00 0.00 0.00 1.85
1786 3012 6.505272 CAGGACCGAAGACTATAAGTTAAGG 58.495 44.000 0.00 0.00 0.00 2.69
1787 3013 6.096564 CAGGACCGAAGACTATAAGTTAAGGT 59.903 42.308 0.00 0.00 0.00 3.50
1789 3015 6.977502 GGACCGAAGACTATAAGTTAAGGTTC 59.022 42.308 0.00 0.00 0.00 3.62
1790 3016 7.363268 GGACCGAAGACTATAAGTTAAGGTTCA 60.363 40.741 0.00 0.00 0.00 3.18
1791 3017 7.899973 ACCGAAGACTATAAGTTAAGGTTCAA 58.100 34.615 0.00 0.00 0.00 2.69
1792 3018 8.370182 ACCGAAGACTATAAGTTAAGGTTCAAA 58.630 33.333 0.00 0.00 0.00 2.69
1793 3019 9.211485 CCGAAGACTATAAGTTAAGGTTCAAAA 57.789 33.333 0.00 0.00 0.00 2.44
1827 3053 6.668541 TTTTTGCGAAATGGTTCAAAATCA 57.331 29.167 0.00 0.00 37.96 2.57
1828 3054 6.668541 TTTTGCGAAATGGTTCAAAATCAA 57.331 29.167 0.00 0.00 34.63 2.57
1829 3055 5.649602 TTGCGAAATGGTTCAAAATCAAC 57.350 34.783 0.00 0.00 32.89 3.18
1831 3057 4.202202 TGCGAAATGGTTCAAAATCAACCT 60.202 37.500 3.39 0.00 43.43 3.50
1832 3058 4.385748 GCGAAATGGTTCAAAATCAACCTC 59.614 41.667 3.39 0.00 43.43 3.85
1834 3060 6.215845 CGAAATGGTTCAAAATCAACCTCTT 58.784 36.000 3.39 0.00 43.43 2.85
1835 3061 6.144402 CGAAATGGTTCAAAATCAACCTCTTG 59.856 38.462 3.39 0.00 43.43 3.02
1836 3062 6.484364 AATGGTTCAAAATCAACCTCTTGT 57.516 33.333 3.39 0.00 43.43 3.16
1838 3064 6.385649 TGGTTCAAAATCAACCTCTTGTAC 57.614 37.500 3.39 0.00 43.43 2.90
1839 3065 6.126409 TGGTTCAAAATCAACCTCTTGTACT 58.874 36.000 3.39 0.00 43.43 2.73
1840 3066 6.039270 TGGTTCAAAATCAACCTCTTGTACTG 59.961 38.462 3.39 0.00 43.43 2.74
1841 3067 6.039382 GGTTCAAAATCAACCTCTTGTACTGT 59.961 38.462 0.00 0.00 40.33 3.55
1842 3068 7.416326 GGTTCAAAATCAACCTCTTGTACTGTT 60.416 37.037 0.00 0.00 40.33 3.16
1843 3069 7.639113 TCAAAATCAACCTCTTGTACTGTTT 57.361 32.000 0.00 0.00 0.00 2.83
1844 3070 8.062065 TCAAAATCAACCTCTTGTACTGTTTT 57.938 30.769 0.00 0.00 0.00 2.43
1846 3072 9.796120 CAAAATCAACCTCTTGTACTGTTTTTA 57.204 29.630 0.00 0.00 0.00 1.52
1848 3074 9.965824 AAATCAACCTCTTGTACTGTTTTTATG 57.034 29.630 0.00 0.00 0.00 1.90
1849 3075 7.504924 TCAACCTCTTGTACTGTTTTTATGG 57.495 36.000 0.00 0.00 0.00 2.74
1851 3077 4.454504 ACCTCTTGTACTGTTTTTATGGCG 59.545 41.667 0.00 0.00 0.00 5.69
1853 3079 5.163854 CCTCTTGTACTGTTTTTATGGCGAG 60.164 44.000 0.00 0.00 0.00 5.03
1855 3081 6.170506 TCTTGTACTGTTTTTATGGCGAGAT 58.829 36.000 0.00 0.00 0.00 2.75
1857 3083 6.417191 TGTACTGTTTTTATGGCGAGATTC 57.583 37.500 0.00 0.00 0.00 2.52
1858 3084 5.935206 TGTACTGTTTTTATGGCGAGATTCA 59.065 36.000 0.00 0.00 0.00 2.57
1859 3085 6.597672 TGTACTGTTTTTATGGCGAGATTCAT 59.402 34.615 0.00 0.00 0.00 2.57
1860 3086 6.124088 ACTGTTTTTATGGCGAGATTCATC 57.876 37.500 0.00 0.00 0.00 2.92
1861 3087 5.882557 ACTGTTTTTATGGCGAGATTCATCT 59.117 36.000 0.00 0.00 40.50 2.90
2094 4102 8.103305 TGCCAGAATAATCTTCAGTTTTACTCT 58.897 33.333 0.00 0.00 32.03 3.24
2101 4109 5.373981 TCTTCAGTTTTACTCTCTCCGTC 57.626 43.478 0.00 0.00 0.00 4.79
2110 4118 6.363167 TTTACTCTCTCCGTCCCAAAATAA 57.637 37.500 0.00 0.00 0.00 1.40
2111 4119 4.473477 ACTCTCTCCGTCCCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
2112 4120 3.838903 ACTCTCTCCGTCCCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
2114 4122 3.055385 TCTCTCCGTCCCAAAATAAGTGG 60.055 47.826 0.00 0.00 35.77 4.00
2116 4124 1.353022 TCCGTCCCAAAATAAGTGGCT 59.647 47.619 0.00 0.00 34.56 4.75
2118 4126 2.094752 CCGTCCCAAAATAAGTGGCTTG 60.095 50.000 0.00 0.00 34.56 4.01
2119 4127 2.817258 CGTCCCAAAATAAGTGGCTTGA 59.183 45.455 0.00 0.00 34.56 3.02
2120 4128 3.119849 CGTCCCAAAATAAGTGGCTTGAG 60.120 47.826 0.00 0.00 34.56 3.02
2121 4129 2.825532 TCCCAAAATAAGTGGCTTGAGC 59.174 45.455 0.00 0.00 41.14 4.26
2122 4130 2.827921 CCCAAAATAAGTGGCTTGAGCT 59.172 45.455 2.66 0.00 41.70 4.09
2123 4131 3.259123 CCCAAAATAAGTGGCTTGAGCTT 59.741 43.478 2.66 0.00 41.70 3.74
2124 4132 4.462483 CCCAAAATAAGTGGCTTGAGCTTA 59.538 41.667 2.66 0.00 41.70 3.09
2125 4133 5.393461 CCCAAAATAAGTGGCTTGAGCTTAG 60.393 44.000 2.66 0.00 41.70 2.18
2127 4135 6.374333 CCAAAATAAGTGGCTTGAGCTTAGTA 59.626 38.462 2.66 0.00 41.70 1.82
2128 4136 6.986904 AAATAAGTGGCTTGAGCTTAGTAC 57.013 37.500 2.66 0.00 41.70 2.73
2129 4137 5.677319 ATAAGTGGCTTGAGCTTAGTACA 57.323 39.130 2.66 0.00 41.70 2.90
2132 4140 4.319177 AGTGGCTTGAGCTTAGTACAAAG 58.681 43.478 2.66 0.00 41.70 2.77
2133 4141 4.065789 GTGGCTTGAGCTTAGTACAAAGT 58.934 43.478 2.66 0.00 41.70 2.66
2134 4142 4.515567 GTGGCTTGAGCTTAGTACAAAGTT 59.484 41.667 2.66 0.00 41.70 2.66
2136 4144 4.755123 GGCTTGAGCTTAGTACAAAGTTGA 59.245 41.667 2.66 0.00 41.70 3.18
2137 4145 5.106908 GGCTTGAGCTTAGTACAAAGTTGAG 60.107 44.000 2.66 0.00 41.70 3.02
2138 4146 5.696724 GCTTGAGCTTAGTACAAAGTTGAGA 59.303 40.000 0.00 0.00 38.21 3.27
2139 4147 6.346999 GCTTGAGCTTAGTACAAAGTTGAGAC 60.347 42.308 0.00 0.00 38.21 3.36
2141 4149 5.983720 TGAGCTTAGTACAAAGTTGAGACAC 59.016 40.000 0.00 0.00 0.00 3.67
2142 4150 6.163135 AGCTTAGTACAAAGTTGAGACACT 57.837 37.500 0.00 0.00 0.00 3.55
2151 4246 9.651718 GTACAAAGTTGAGACACTTATTTTGAG 57.348 33.333 0.00 0.00 35.87 3.02
2155 4250 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
2159 4254 4.283722 AGACACTTATTTTGAGACGGAGGT 59.716 41.667 0.00 0.00 0.00 3.85
2166 4261 9.193806 ACTTATTTTGAGACGGAGGTAGTATAA 57.806 33.333 0.00 0.00 0.00 0.98
2172 4267 8.798859 TTGAGACGGAGGTAGTATAATATACC 57.201 38.462 6.79 0.00 41.56 2.73
2174 4269 7.826252 TGAGACGGAGGTAGTATAATATACCAC 59.174 40.741 6.79 3.90 43.33 4.16
2175 4270 7.115414 AGACGGAGGTAGTATAATATACCACC 58.885 42.308 16.77 16.77 44.70 4.61
2193 4288 8.782137 ATACCACCAAATAATTGCTTATTCCT 57.218 30.769 0.00 0.00 36.70 3.36
2194 4289 7.494922 ACCACCAAATAATTGCTTATTCCTT 57.505 32.000 0.00 0.00 36.70 3.36
2196 4291 7.400052 ACCACCAAATAATTGCTTATTCCTTCT 59.600 33.333 0.00 0.00 36.70 2.85
2197 4292 8.912988 CCACCAAATAATTGCTTATTCCTTCTA 58.087 33.333 0.00 0.00 36.70 2.10
2198 4293 9.956720 CACCAAATAATTGCTTATTCCTTCTAG 57.043 33.333 0.00 0.00 36.70 2.43
2199 4294 9.920946 ACCAAATAATTGCTTATTCCTTCTAGA 57.079 29.630 0.00 0.00 36.70 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1051 1821 2.509336 GCGCTCTTCTGCCGCTAA 60.509 61.111 0.00 0.00 32.72 3.09
1542 2356 2.456577 ACCCACCATATTTGAGGCAAC 58.543 47.619 0.00 0.00 0.00 4.17
1543 2357 2.917713 ACCCACCATATTTGAGGCAA 57.082 45.000 0.00 0.00 0.00 4.52
1544 2358 2.917713 AACCCACCATATTTGAGGCA 57.082 45.000 0.00 0.00 0.00 4.75
1545 2359 4.551702 AAAAACCCACCATATTTGAGGC 57.448 40.909 0.00 0.00 0.00 4.70
1546 2360 8.371699 TCTTTTAAAAACCCACCATATTTGAGG 58.628 33.333 1.66 0.00 0.00 3.86
1547 2361 9.771534 TTCTTTTAAAAACCCACCATATTTGAG 57.228 29.630 1.66 0.00 0.00 3.02
1554 2368 9.467796 TTTGATTTTCTTTTAAAAACCCACCAT 57.532 25.926 1.66 0.00 31.35 3.55
1555 2369 8.731605 GTTTGATTTTCTTTTAAAAACCCACCA 58.268 29.630 1.66 0.00 31.35 4.17
1556 2370 8.952278 AGTTTGATTTTCTTTTAAAAACCCACC 58.048 29.630 1.66 0.00 31.35 4.61
1570 2751 8.169977 TCATCACTTTGCTAGTTTGATTTTCT 57.830 30.769 0.00 0.00 33.85 2.52
1605 2786 5.462729 TCGTCGTGTAGAGCAATTTACAAAA 59.537 36.000 0.00 0.00 32.08 2.44
1607 2788 4.548494 TCGTCGTGTAGAGCAATTTACAA 58.452 39.130 0.00 0.00 32.08 2.41
1611 2792 2.607187 CCTCGTCGTGTAGAGCAATTT 58.393 47.619 0.00 0.00 33.39 1.82
1614 2795 0.892358 ACCCTCGTCGTGTAGAGCAA 60.892 55.000 0.00 0.00 33.39 3.91
1615 2796 0.036105 TACCCTCGTCGTGTAGAGCA 60.036 55.000 0.00 0.00 33.39 4.26
1617 2798 1.730501 TGTACCCTCGTCGTGTAGAG 58.269 55.000 0.00 0.00 0.00 2.43
1618 2799 2.183478 TTGTACCCTCGTCGTGTAGA 57.817 50.000 0.00 0.00 0.00 2.59
1619 2800 3.498927 AATTGTACCCTCGTCGTGTAG 57.501 47.619 0.00 0.00 0.00 2.74
1620 2801 3.940209 AAATTGTACCCTCGTCGTGTA 57.060 42.857 0.00 0.00 0.00 2.90
1621 2802 2.825861 AAATTGTACCCTCGTCGTGT 57.174 45.000 0.00 0.00 0.00 4.49
1622 2803 5.789710 AAATAAATTGTACCCTCGTCGTG 57.210 39.130 0.00 0.00 0.00 4.35
1623 2804 7.495055 AGATAAATAAATTGTACCCTCGTCGT 58.505 34.615 0.00 0.00 0.00 4.34
1624 2805 7.941795 AGATAAATAAATTGTACCCTCGTCG 57.058 36.000 0.00 0.00 0.00 5.12
1625 2806 9.931210 CAAAGATAAATAAATTGTACCCTCGTC 57.069 33.333 0.00 0.00 0.00 4.20
1626 2807 9.457436 ACAAAGATAAATAAATTGTACCCTCGT 57.543 29.630 0.00 0.00 32.81 4.18
1630 2811 9.961265 GCCTACAAAGATAAATAAATTGTACCC 57.039 33.333 0.00 0.00 35.89 3.69
1635 2816 9.438291 CGTCTGCCTACAAAGATAAATAAATTG 57.562 33.333 0.00 0.00 0.00 2.32
1636 2817 8.621286 CCGTCTGCCTACAAAGATAAATAAATT 58.379 33.333 0.00 0.00 0.00 1.82
1637 2818 7.228706 CCCGTCTGCCTACAAAGATAAATAAAT 59.771 37.037 0.00 0.00 0.00 1.40
1638 2819 6.540914 CCCGTCTGCCTACAAAGATAAATAAA 59.459 38.462 0.00 0.00 0.00 1.40
1639 2820 6.053005 CCCGTCTGCCTACAAAGATAAATAA 58.947 40.000 0.00 0.00 0.00 1.40
1640 2821 5.454187 CCCCGTCTGCCTACAAAGATAAATA 60.454 44.000 0.00 0.00 0.00 1.40
1641 2822 4.451900 CCCGTCTGCCTACAAAGATAAAT 58.548 43.478 0.00 0.00 0.00 1.40
1642 2823 3.370103 CCCCGTCTGCCTACAAAGATAAA 60.370 47.826 0.00 0.00 0.00 1.40
1643 2824 2.169769 CCCCGTCTGCCTACAAAGATAA 59.830 50.000 0.00 0.00 0.00 1.75
1644 2825 1.760613 CCCCGTCTGCCTACAAAGATA 59.239 52.381 0.00 0.00 0.00 1.98
1645 2826 0.541863 CCCCGTCTGCCTACAAAGAT 59.458 55.000 0.00 0.00 0.00 2.40
1646 2827 1.550130 CCCCCGTCTGCCTACAAAGA 61.550 60.000 0.00 0.00 0.00 2.52
1647 2828 1.078426 CCCCCGTCTGCCTACAAAG 60.078 63.158 0.00 0.00 0.00 2.77
1648 2829 0.544833 TACCCCCGTCTGCCTACAAA 60.545 55.000 0.00 0.00 0.00 2.83
1649 2830 0.974010 CTACCCCCGTCTGCCTACAA 60.974 60.000 0.00 0.00 0.00 2.41
1650 2831 1.380785 CTACCCCCGTCTGCCTACA 60.381 63.158 0.00 0.00 0.00 2.74
1651 2832 2.794028 GCTACCCCCGTCTGCCTAC 61.794 68.421 0.00 0.00 0.00 3.18
1652 2833 2.443390 GCTACCCCCGTCTGCCTA 60.443 66.667 0.00 0.00 0.00 3.93
1655 2836 2.552231 AAATGGCTACCCCCGTCTGC 62.552 60.000 0.00 0.00 0.00 4.26
1656 2837 0.834612 TAAATGGCTACCCCCGTCTG 59.165 55.000 0.00 0.00 0.00 3.51
1657 2838 1.129058 CTAAATGGCTACCCCCGTCT 58.871 55.000 0.00 0.00 0.00 4.18
1658 2839 0.108019 CCTAAATGGCTACCCCCGTC 59.892 60.000 0.00 0.00 0.00 4.79
1659 2840 0.622446 ACCTAAATGGCTACCCCCGT 60.622 55.000 0.00 0.00 40.22 5.28
1660 2841 0.549469 AACCTAAATGGCTACCCCCG 59.451 55.000 0.00 0.00 40.22 5.73
1661 2842 3.957508 TTAACCTAAATGGCTACCCCC 57.042 47.619 0.00 0.00 40.22 5.40
1662 2843 4.647853 CCTTTTAACCTAAATGGCTACCCC 59.352 45.833 0.00 0.00 40.22 4.95
1663 2844 5.126545 CACCTTTTAACCTAAATGGCTACCC 59.873 44.000 9.74 0.00 43.18 3.69
1664 2845 5.713389 ACACCTTTTAACCTAAATGGCTACC 59.287 40.000 9.74 0.00 43.18 3.18
1665 2846 6.829229 ACACCTTTTAACCTAAATGGCTAC 57.171 37.500 9.74 0.00 43.18 3.58
1666 2847 7.943447 TGTAACACCTTTTAACCTAAATGGCTA 59.057 33.333 9.74 0.00 43.18 3.93
1667 2848 6.778559 TGTAACACCTTTTAACCTAAATGGCT 59.221 34.615 9.74 1.21 43.18 4.75
1668 2849 6.983984 TGTAACACCTTTTAACCTAAATGGC 58.016 36.000 9.74 0.00 43.18 4.40
1669 2850 9.819267 TTTTGTAACACCTTTTAACCTAAATGG 57.181 29.630 8.70 8.70 44.27 3.16
1754 2980 0.320771 TCTTCGGTCCTGCTTGAAGC 60.321 55.000 10.84 10.84 42.82 3.86
1755 2981 1.001406 AGTCTTCGGTCCTGCTTGAAG 59.999 52.381 0.00 0.00 39.28 3.02
1756 2982 1.048601 AGTCTTCGGTCCTGCTTGAA 58.951 50.000 0.00 0.00 0.00 2.69
1757 2983 1.919240 TAGTCTTCGGTCCTGCTTGA 58.081 50.000 0.00 0.00 0.00 3.02
1758 2984 2.969628 ATAGTCTTCGGTCCTGCTTG 57.030 50.000 0.00 0.00 0.00 4.01
1759 2985 4.024670 ACTTATAGTCTTCGGTCCTGCTT 58.975 43.478 0.00 0.00 0.00 3.91
1760 2986 3.633418 ACTTATAGTCTTCGGTCCTGCT 58.367 45.455 0.00 0.00 0.00 4.24
1762 2988 6.096564 ACCTTAACTTATAGTCTTCGGTCCTG 59.903 42.308 0.00 0.00 0.00 3.86
1763 2989 6.193504 ACCTTAACTTATAGTCTTCGGTCCT 58.806 40.000 0.00 0.00 0.00 3.85
1766 2992 7.472334 TGAACCTTAACTTATAGTCTTCGGT 57.528 36.000 0.00 0.00 0.00 4.69
1804 3030 6.668541 TGATTTTGAACCATTTCGCAAAAA 57.331 29.167 0.00 0.00 41.68 1.94
1805 3031 6.457528 GGTTGATTTTGAACCATTTCGCAAAA 60.458 34.615 0.00 0.00 42.26 2.44
1806 3032 5.007136 GGTTGATTTTGAACCATTTCGCAAA 59.993 36.000 0.00 0.00 42.26 3.68
1807 3033 4.509600 GGTTGATTTTGAACCATTTCGCAA 59.490 37.500 0.00 0.00 42.26 4.85
1808 3034 4.054671 GGTTGATTTTGAACCATTTCGCA 58.945 39.130 0.00 0.00 42.26 5.10
1809 3035 4.306600 AGGTTGATTTTGAACCATTTCGC 58.693 39.130 0.00 0.00 44.71 4.70
1810 3036 5.772521 AGAGGTTGATTTTGAACCATTTCG 58.227 37.500 0.00 0.00 44.71 3.46
1811 3037 6.986231 ACAAGAGGTTGATTTTGAACCATTTC 59.014 34.615 0.00 0.00 44.71 2.17
1815 3041 6.039270 CAGTACAAGAGGTTGATTTTGAACCA 59.961 38.462 0.00 0.00 44.71 3.67
1818 3044 7.639113 AACAGTACAAGAGGTTGATTTTGAA 57.361 32.000 0.00 0.00 37.10 2.69
1819 3045 7.639113 AAACAGTACAAGAGGTTGATTTTGA 57.361 32.000 0.00 0.00 37.10 2.69
1820 3046 8.702163 AAAAACAGTACAAGAGGTTGATTTTG 57.298 30.769 0.00 0.00 37.10 2.44
1822 3048 9.965824 CATAAAAACAGTACAAGAGGTTGATTT 57.034 29.630 0.00 0.00 37.10 2.17
1823 3049 8.576442 CCATAAAAACAGTACAAGAGGTTGATT 58.424 33.333 0.00 0.00 37.10 2.57
1824 3050 7.309194 GCCATAAAAACAGTACAAGAGGTTGAT 60.309 37.037 0.00 0.00 37.10 2.57
1826 3052 6.149633 GCCATAAAAACAGTACAAGAGGTTG 58.850 40.000 0.00 0.00 39.82 3.77
1827 3053 5.048991 CGCCATAAAAACAGTACAAGAGGTT 60.049 40.000 0.00 0.00 0.00 3.50
1828 3054 4.454504 CGCCATAAAAACAGTACAAGAGGT 59.545 41.667 0.00 0.00 0.00 3.85
1829 3055 4.693566 TCGCCATAAAAACAGTACAAGAGG 59.306 41.667 0.00 0.00 0.00 3.69
1831 3057 5.543714 TCTCGCCATAAAAACAGTACAAGA 58.456 37.500 0.00 0.00 0.00 3.02
1832 3058 5.856126 TCTCGCCATAAAAACAGTACAAG 57.144 39.130 0.00 0.00 0.00 3.16
1834 3060 5.935206 TGAATCTCGCCATAAAAACAGTACA 59.065 36.000 0.00 0.00 0.00 2.90
1835 3061 6.417191 TGAATCTCGCCATAAAAACAGTAC 57.583 37.500 0.00 0.00 0.00 2.73
1836 3062 7.047891 AGATGAATCTCGCCATAAAAACAGTA 58.952 34.615 0.00 0.00 29.30 2.74
1838 3064 6.369059 AGATGAATCTCGCCATAAAAACAG 57.631 37.500 0.00 0.00 29.30 3.16
1839 3065 6.757897 AAGATGAATCTCGCCATAAAAACA 57.242 33.333 0.00 0.00 35.76 2.83
2066 3292 9.905713 AGTAAAACTGAAGATTATTCTGGCATA 57.094 29.630 0.00 0.00 30.72 3.14
2067 3293 8.814038 AGTAAAACTGAAGATTATTCTGGCAT 57.186 30.769 0.00 0.00 30.72 4.40
2073 3299 9.026074 CGGAGAGAGTAAAACTGAAGATTATTC 57.974 37.037 0.00 0.00 0.00 1.75
2075 3301 8.068892 ACGGAGAGAGTAAAACTGAAGATTAT 57.931 34.615 0.00 0.00 0.00 1.28
2076 3302 7.362747 GGACGGAGAGAGTAAAACTGAAGATTA 60.363 40.741 0.00 0.00 0.00 1.75
2079 3305 4.217983 GGACGGAGAGAGTAAAACTGAAGA 59.782 45.833 0.00 0.00 0.00 2.87
2080 3306 4.487019 GGACGGAGAGAGTAAAACTGAAG 58.513 47.826 0.00 0.00 0.00 3.02
2083 3309 2.561419 TGGGACGGAGAGAGTAAAACTG 59.439 50.000 0.00 0.00 0.00 3.16
2084 3310 2.885616 TGGGACGGAGAGAGTAAAACT 58.114 47.619 0.00 0.00 0.00 2.66
2085 3311 3.672767 TTGGGACGGAGAGAGTAAAAC 57.327 47.619 0.00 0.00 0.00 2.43
2086 3312 4.693042 TTTTGGGACGGAGAGAGTAAAA 57.307 40.909 0.00 0.00 0.00 1.52
2088 3314 5.482878 ACTTATTTTGGGACGGAGAGAGTAA 59.517 40.000 0.00 0.00 0.00 2.24
2094 4102 2.617021 GCCACTTATTTTGGGACGGAGA 60.617 50.000 0.00 0.00 34.35 3.71
2097 4105 1.834188 AGCCACTTATTTTGGGACGG 58.166 50.000 0.00 0.00 34.35 4.79
2098 4106 2.817258 TCAAGCCACTTATTTTGGGACG 59.183 45.455 0.00 0.00 34.35 4.79
2101 4109 2.827921 AGCTCAAGCCACTTATTTTGGG 59.172 45.455 0.00 0.00 43.38 4.12
2110 4118 4.202367 ACTTTGTACTAAGCTCAAGCCACT 60.202 41.667 15.69 0.00 43.38 4.00
2111 4119 4.065789 ACTTTGTACTAAGCTCAAGCCAC 58.934 43.478 15.69 0.00 43.38 5.01
2112 4120 4.351874 ACTTTGTACTAAGCTCAAGCCA 57.648 40.909 15.69 0.00 43.38 4.75
2114 4122 5.696724 TCTCAACTTTGTACTAAGCTCAAGC 59.303 40.000 15.69 0.00 42.49 4.01
2116 4124 6.479001 GTGTCTCAACTTTGTACTAAGCTCAA 59.521 38.462 15.69 0.73 0.00 3.02
2118 4126 6.217294 AGTGTCTCAACTTTGTACTAAGCTC 58.783 40.000 15.69 1.80 0.00 4.09
2119 4127 6.163135 AGTGTCTCAACTTTGTACTAAGCT 57.837 37.500 15.69 2.23 0.00 3.74
2120 4128 6.846325 AAGTGTCTCAACTTTGTACTAAGC 57.154 37.500 15.69 1.05 37.05 3.09
2124 4132 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
2125 4133 9.651718 CTCAAAATAAGTGTCTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
2127 4135 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
2128 4136 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
2129 4137 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
2132 4140 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
2133 4141 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
2134 4142 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
2136 4144 4.283722 ACCTCCGTCTCAAAATAAGTGTCT 59.716 41.667 0.00 0.00 0.00 3.41
2137 4145 4.566987 ACCTCCGTCTCAAAATAAGTGTC 58.433 43.478 0.00 0.00 0.00 3.67
2138 4146 4.618920 ACCTCCGTCTCAAAATAAGTGT 57.381 40.909 0.00 0.00 0.00 3.55
2139 4147 5.721232 ACTACCTCCGTCTCAAAATAAGTG 58.279 41.667 0.00 0.00 0.00 3.16
2151 4246 7.326968 GGTGGTATATTATACTACCTCCGTC 57.673 44.000 28.77 11.66 43.20 4.79
2167 4262 9.875708 AGGAATAAGCAATTATTTGGTGGTATA 57.124 29.630 3.04 0.00 42.53 1.47
2168 4263 8.782137 AGGAATAAGCAATTATTTGGTGGTAT 57.218 30.769 3.04 0.00 42.53 2.73
2169 4264 8.602472 AAGGAATAAGCAATTATTTGGTGGTA 57.398 30.769 3.04 0.00 42.53 3.25
2171 4266 7.785033 AGAAGGAATAAGCAATTATTTGGTGG 58.215 34.615 3.04 0.00 42.53 4.61
2172 4267 9.956720 CTAGAAGGAATAAGCAATTATTTGGTG 57.043 33.333 3.04 0.00 42.53 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.