Multiple sequence alignment - TraesCS3B01G360100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G360100 chr3B 100.000 2807 0 0 1 2807 571883952 571886758 0.000000e+00 5184.0
1 TraesCS3B01G360100 chr3A 90.159 1443 93 17 550 1973 574913578 574914990 0.000000e+00 1832.0
2 TraesCS3B01G360100 chr3A 85.745 463 38 10 2235 2692 574915115 574915554 5.480000e-127 464.0
3 TraesCS3B01G360100 chr3A 85.714 308 40 3 89 396 574912909 574913212 3.490000e-84 322.0
4 TraesCS3B01G360100 chr3A 87.821 156 18 1 1815 1970 574928350 574928504 6.180000e-42 182.0
5 TraesCS3B01G360100 chr3A 93.651 63 4 0 1 63 574912848 574912910 8.280000e-16 95.3
6 TraesCS3B01G360100 chr3D 92.331 1304 74 8 581 1860 436176054 436177355 0.000000e+00 1831.0
7 TraesCS3B01G360100 chr3D 91.466 539 36 5 2270 2807 436179543 436180072 0.000000e+00 732.0
8 TraesCS3B01G360100 chr3D 88.321 137 13 3 1834 1970 436214012 436214145 8.050000e-36 161.0
9 TraesCS3B01G360100 chr3D 94.737 95 4 1 1888 1981 436179290 436179384 2.250000e-31 147.0
10 TraesCS3B01G360100 chr3D 91.667 48 4 0 1852 1899 436177760 436177807 1.800000e-07 67.6
11 TraesCS3B01G360100 chr7B 87.500 48 6 0 2175 2222 568427368 568427415 3.910000e-04 56.5
12 TraesCS3B01G360100 chr1B 100.000 28 0 0 2175 2202 645548449 645548476 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G360100 chr3B 571883952 571886758 2806 False 5184.000 5184 100.00000 1 2807 1 chr3B.!!$F1 2806
1 TraesCS3B01G360100 chr3A 574912848 574915554 2706 False 678.325 1832 88.81725 1 2692 4 chr3A.!!$F2 2691
2 TraesCS3B01G360100 chr3D 436176054 436180072 4018 False 694.400 1831 92.55025 581 2807 4 chr3D.!!$F2 2226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 1241 0.172803 GCCCCGATCGATATAAGCGT 59.827 55.0 18.66 0.0 0.0 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2141 0.109226 ACGAAGTACTCTTCCGCAGC 60.109 55.0 0.0 0.0 45.02 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.254975 TTCGAGACCCTGCGGATCAA 61.255 55.000 0.00 0.00 0.00 2.57
64 65 1.519455 CGAGACCCTGCGGATCAAC 60.519 63.158 0.00 0.00 0.00 3.18
65 66 1.596934 GAGACCCTGCGGATCAACA 59.403 57.895 0.00 0.00 0.00 3.33
66 67 0.179000 GAGACCCTGCGGATCAACAT 59.821 55.000 0.00 0.00 0.00 2.71
67 68 0.179000 AGACCCTGCGGATCAACATC 59.821 55.000 0.00 0.00 0.00 3.06
68 69 0.815615 GACCCTGCGGATCAACATCC 60.816 60.000 0.00 0.00 45.04 3.51
79 80 4.348863 GATCAACATCCAGGCATCTACT 57.651 45.455 0.00 0.00 0.00 2.57
80 81 3.827008 TCAACATCCAGGCATCTACTC 57.173 47.619 0.00 0.00 0.00 2.59
81 82 3.106827 TCAACATCCAGGCATCTACTCA 58.893 45.455 0.00 0.00 0.00 3.41
82 83 3.519107 TCAACATCCAGGCATCTACTCAA 59.481 43.478 0.00 0.00 0.00 3.02
83 84 4.019411 TCAACATCCAGGCATCTACTCAAA 60.019 41.667 0.00 0.00 0.00 2.69
84 85 3.878778 ACATCCAGGCATCTACTCAAAC 58.121 45.455 0.00 0.00 0.00 2.93
85 86 2.672961 TCCAGGCATCTACTCAAACG 57.327 50.000 0.00 0.00 0.00 3.60
86 87 1.009829 CCAGGCATCTACTCAAACGC 58.990 55.000 0.00 0.00 0.00 4.84
87 88 1.675714 CCAGGCATCTACTCAAACGCA 60.676 52.381 0.00 0.00 0.00 5.24
88 89 1.394917 CAGGCATCTACTCAAACGCAC 59.605 52.381 0.00 0.00 0.00 5.34
89 90 1.001974 AGGCATCTACTCAAACGCACA 59.998 47.619 0.00 0.00 0.00 4.57
94 95 4.641954 CATCTACTCAAACGCACATGTTC 58.358 43.478 0.00 0.00 0.00 3.18
96 97 3.740832 TCTACTCAAACGCACATGTTCAG 59.259 43.478 0.00 0.00 0.00 3.02
107 108 3.415212 CACATGTTCAGAGATTGGTGGT 58.585 45.455 0.00 0.00 0.00 4.16
112 113 3.882888 TGTTCAGAGATTGGTGGTTTGAC 59.117 43.478 0.00 0.00 0.00 3.18
120 121 4.823989 AGATTGGTGGTTTGACAAGAGAAG 59.176 41.667 0.00 0.00 0.00 2.85
123 124 4.199310 TGGTGGTTTGACAAGAGAAGAAG 58.801 43.478 0.00 0.00 0.00 2.85
124 125 4.200092 GGTGGTTTGACAAGAGAAGAAGT 58.800 43.478 0.00 0.00 0.00 3.01
131 132 4.119862 TGACAAGAGAAGAAGTTTCACCG 58.880 43.478 0.00 0.00 0.00 4.94
143 144 2.298163 AGTTTCACCGGACGTATCAAGT 59.702 45.455 9.46 0.00 0.00 3.16
156 157 3.791887 CGTATCAAGTGTGGATTCGACTC 59.208 47.826 0.43 0.00 37.63 3.36
167 168 4.624024 GTGGATTCGACTCGTTTGTGATTA 59.376 41.667 0.00 0.00 0.00 1.75
178 179 3.723835 CGTTTGTGATTAGTACCGCTTGC 60.724 47.826 0.00 0.00 0.00 4.01
201 202 1.815003 GTTGTGGAAGCAGAGGAATGG 59.185 52.381 0.00 0.00 0.00 3.16
202 203 1.067295 TGTGGAAGCAGAGGAATGGT 58.933 50.000 0.00 0.00 0.00 3.55
206 207 2.119495 GGAAGCAGAGGAATGGTAGGA 58.881 52.381 0.00 0.00 0.00 2.94
211 212 3.525199 AGCAGAGGAATGGTAGGATGTTT 59.475 43.478 0.00 0.00 0.00 2.83
214 215 6.064717 GCAGAGGAATGGTAGGATGTTTAAT 58.935 40.000 0.00 0.00 0.00 1.40
218 219 8.875168 AGAGGAATGGTAGGATGTTTAATAGAG 58.125 37.037 0.00 0.00 0.00 2.43
224 225 9.784531 ATGGTAGGATGTTTAATAGAGTTCATG 57.215 33.333 0.00 0.00 0.00 3.07
238 239 5.271598 AGAGTTCATGAGAAGAGATCACCT 58.728 41.667 0.00 0.00 33.63 4.00
268 269 2.158623 TGTTGAGCAGGTGTTTCTGGAT 60.159 45.455 0.00 0.00 35.43 3.41
271 272 2.158623 TGAGCAGGTGTTTCTGGATGTT 60.159 45.455 0.00 0.00 35.43 2.71
272 273 2.887152 GAGCAGGTGTTTCTGGATGTTT 59.113 45.455 0.00 0.00 35.43 2.83
280 281 2.558359 GTTTCTGGATGTTTGGGACTGG 59.442 50.000 0.00 0.00 0.00 4.00
282 283 1.630369 TCTGGATGTTTGGGACTGGAG 59.370 52.381 0.00 0.00 0.00 3.86
286 287 0.779997 ATGTTTGGGACTGGAGGCTT 59.220 50.000 0.00 0.00 0.00 4.35
303 304 1.673033 GCTTGCTGGCTTCGAAGTAGA 60.673 52.381 25.24 9.46 0.00 2.59
314 315 6.098409 TGGCTTCGAAGTAGAAGGATTAGATT 59.902 38.462 25.24 0.00 45.65 2.40
327 328 7.340743 AGAAGGATTAGATTCTTTCGTGAGAGA 59.659 37.037 0.00 0.00 43.69 3.10
329 330 6.605594 AGGATTAGATTCTTTCGTGAGAGAGT 59.394 38.462 0.00 0.00 42.50 3.24
330 331 6.695278 GGATTAGATTCTTTCGTGAGAGAGTG 59.305 42.308 0.00 0.00 42.50 3.51
331 332 6.819397 TTAGATTCTTTCGTGAGAGAGTGA 57.181 37.500 0.00 0.00 42.50 3.41
332 333 5.054390 AGATTCTTTCGTGAGAGAGTGAC 57.946 43.478 0.00 0.00 42.50 3.67
333 334 4.764823 AGATTCTTTCGTGAGAGAGTGACT 59.235 41.667 0.00 0.00 42.50 3.41
337 338 3.833545 TTCGTGAGAGAGTGACTTAGC 57.166 47.619 0.00 0.00 43.69 3.09
342 343 2.232452 TGAGAGAGTGACTTAGCCTTGC 59.768 50.000 0.00 0.00 0.00 4.01
356 357 1.133790 GCCTTGCTTAGCTGATGTTGG 59.866 52.381 5.60 0.00 0.00 3.77
360 361 2.426522 TGCTTAGCTGATGTTGGTGTC 58.573 47.619 5.60 0.00 0.00 3.67
361 362 2.038952 TGCTTAGCTGATGTTGGTGTCT 59.961 45.455 5.60 0.00 0.00 3.41
370 371 3.505680 TGATGTTGGTGTCTGGTTTATGC 59.494 43.478 0.00 0.00 0.00 3.14
371 372 1.876799 TGTTGGTGTCTGGTTTATGCG 59.123 47.619 0.00 0.00 0.00 4.73
385 386 3.775661 TTATGCGAGTCGAGATGTTCA 57.224 42.857 18.61 2.66 0.00 3.18
389 390 2.263077 GCGAGTCGAGATGTTCACATT 58.737 47.619 18.61 0.00 36.57 2.71
396 397 4.213270 GTCGAGATGTTCACATTTTGGTCA 59.787 41.667 0.00 0.00 36.57 4.02
397 398 4.452114 TCGAGATGTTCACATTTTGGTCAG 59.548 41.667 0.00 0.00 36.57 3.51
401 694 2.964464 TGTTCACATTTTGGTCAGGCAT 59.036 40.909 0.00 0.00 0.00 4.40
421 714 8.299570 CAGGCATCTTGTAATTAAACTTTCTGT 58.700 33.333 0.00 0.00 0.00 3.41
456 749 6.911484 ATTTTTCTTTCTCAAATACGCACG 57.089 33.333 0.00 0.00 0.00 5.34
457 750 5.412526 TTTTCTTTCTCAAATACGCACGT 57.587 34.783 0.00 0.00 0.00 4.49
458 751 4.383774 TTCTTTCTCAAATACGCACGTG 57.616 40.909 12.28 12.28 0.00 4.49
459 752 3.386486 TCTTTCTCAAATACGCACGTGT 58.614 40.909 18.38 0.00 0.00 4.49
460 753 3.427528 TCTTTCTCAAATACGCACGTGTC 59.572 43.478 18.38 8.63 0.00 3.67
462 755 2.954316 TCTCAAATACGCACGTGTCAT 58.046 42.857 18.38 5.16 0.00 3.06
463 756 3.322369 TCTCAAATACGCACGTGTCATT 58.678 40.909 18.38 11.00 0.00 2.57
464 757 3.743911 TCTCAAATACGCACGTGTCATTT 59.256 39.130 18.38 15.90 0.00 2.32
465 758 4.924462 TCTCAAATACGCACGTGTCATTTA 59.076 37.500 18.38 2.04 0.00 1.40
466 759 5.579119 TCTCAAATACGCACGTGTCATTTAT 59.421 36.000 18.38 4.31 0.00 1.40
467 760 6.091577 TCTCAAATACGCACGTGTCATTTATT 59.908 34.615 18.38 9.77 0.00 1.40
468 761 7.275999 TCTCAAATACGCACGTGTCATTTATTA 59.724 33.333 18.38 8.25 0.00 0.98
469 762 7.911343 TCAAATACGCACGTGTCATTTATTAT 58.089 30.769 18.38 0.28 0.00 1.28
470 763 9.032420 TCAAATACGCACGTGTCATTTATTATA 57.968 29.630 18.38 3.20 0.00 0.98
471 764 9.301606 CAAATACGCACGTGTCATTTATTATAG 57.698 33.333 18.38 4.31 0.00 1.31
472 765 8.806177 AATACGCACGTGTCATTTATTATAGA 57.194 30.769 18.38 0.00 0.00 1.98
473 766 8.806177 ATACGCACGTGTCATTTATTATAGAA 57.194 30.769 18.38 0.00 0.00 2.10
474 767 7.161829 ACGCACGTGTCATTTATTATAGAAG 57.838 36.000 18.38 0.00 0.00 2.85
475 768 6.976349 ACGCACGTGTCATTTATTATAGAAGA 59.024 34.615 18.38 0.00 0.00 2.87
476 769 7.490079 ACGCACGTGTCATTTATTATAGAAGAA 59.510 33.333 18.38 0.00 0.00 2.52
477 770 8.325282 CGCACGTGTCATTTATTATAGAAGAAA 58.675 33.333 18.38 0.00 30.73 2.52
478 771 9.638300 GCACGTGTCATTTATTATAGAAGAAAG 57.362 33.333 18.38 0.00 29.73 2.62
480 773 9.326413 ACGTGTCATTTATTATAGAAGAAAGGG 57.674 33.333 2.51 0.00 30.53 3.95
481 774 8.774586 CGTGTCATTTATTATAGAAGAAAGGGG 58.225 37.037 2.51 0.00 30.53 4.79
482 775 9.847224 GTGTCATTTATTATAGAAGAAAGGGGA 57.153 33.333 2.51 0.00 30.53 4.81
500 793 3.828921 GGGATAAGTACCCCAAATCCAC 58.171 50.000 0.34 0.00 42.24 4.02
501 794 3.203487 GGGATAAGTACCCCAAATCCACA 59.797 47.826 0.34 0.00 42.24 4.17
502 795 4.461198 GGATAAGTACCCCAAATCCACAG 58.539 47.826 0.00 0.00 36.83 3.66
503 796 4.079958 GGATAAGTACCCCAAATCCACAGT 60.080 45.833 0.00 0.00 36.83 3.55
504 797 3.895704 AAGTACCCCAAATCCACAGTT 57.104 42.857 0.00 0.00 0.00 3.16
505 798 6.353255 GGATAAGTACCCCAAATCCACAGTTA 60.353 42.308 0.00 0.00 36.83 2.24
506 799 4.296621 AGTACCCCAAATCCACAGTTAC 57.703 45.455 0.00 0.00 0.00 2.50
507 800 3.653836 AGTACCCCAAATCCACAGTTACA 59.346 43.478 0.00 0.00 0.00 2.41
508 801 3.603965 ACCCCAAATCCACAGTTACAA 57.396 42.857 0.00 0.00 0.00 2.41
509 802 3.496331 ACCCCAAATCCACAGTTACAAG 58.504 45.455 0.00 0.00 0.00 3.16
510 803 3.117284 ACCCCAAATCCACAGTTACAAGT 60.117 43.478 0.00 0.00 0.00 3.16
511 804 3.506067 CCCCAAATCCACAGTTACAAGTC 59.494 47.826 0.00 0.00 0.00 3.01
512 805 4.398319 CCCAAATCCACAGTTACAAGTCT 58.602 43.478 0.00 0.00 0.00 3.24
513 806 4.455877 CCCAAATCCACAGTTACAAGTCTC 59.544 45.833 0.00 0.00 0.00 3.36
514 807 4.455877 CCAAATCCACAGTTACAAGTCTCC 59.544 45.833 0.00 0.00 0.00 3.71
515 808 5.308825 CAAATCCACAGTTACAAGTCTCCT 58.691 41.667 0.00 0.00 0.00 3.69
516 809 6.464222 CAAATCCACAGTTACAAGTCTCCTA 58.536 40.000 0.00 0.00 0.00 2.94
517 810 6.875972 AATCCACAGTTACAAGTCTCCTAT 57.124 37.500 0.00 0.00 0.00 2.57
518 811 7.973048 AATCCACAGTTACAAGTCTCCTATA 57.027 36.000 0.00 0.00 0.00 1.31
519 812 7.973048 ATCCACAGTTACAAGTCTCCTATAA 57.027 36.000 0.00 0.00 0.00 0.98
520 813 7.786046 TCCACAGTTACAAGTCTCCTATAAA 57.214 36.000 0.00 0.00 0.00 1.40
521 814 8.375493 TCCACAGTTACAAGTCTCCTATAAAT 57.625 34.615 0.00 0.00 0.00 1.40
522 815 9.483489 TCCACAGTTACAAGTCTCCTATAAATA 57.517 33.333 0.00 0.00 0.00 1.40
532 825 9.088512 CAAGTCTCCTATAAATATATGTTCCGC 57.911 37.037 0.00 0.00 0.00 5.54
533 826 7.783042 AGTCTCCTATAAATATATGTTCCGCC 58.217 38.462 0.00 0.00 0.00 6.13
534 827 7.399191 AGTCTCCTATAAATATATGTTCCGCCA 59.601 37.037 0.00 0.00 0.00 5.69
535 828 8.204836 GTCTCCTATAAATATATGTTCCGCCAT 58.795 37.037 0.00 0.00 0.00 4.40
536 829 8.768397 TCTCCTATAAATATATGTTCCGCCATT 58.232 33.333 0.00 0.00 0.00 3.16
537 830 8.958119 TCCTATAAATATATGTTCCGCCATTC 57.042 34.615 0.00 0.00 0.00 2.67
538 831 7.709182 TCCTATAAATATATGTTCCGCCATTCG 59.291 37.037 0.00 0.00 38.08 3.34
539 832 4.419522 AAATATATGTTCCGCCATTCGC 57.580 40.909 0.00 0.00 36.73 4.70
548 841 3.706140 GCCATTCGCGTACTCCTG 58.294 61.111 5.77 0.00 0.00 3.86
549 842 1.141019 GCCATTCGCGTACTCCTGA 59.859 57.895 5.77 0.00 0.00 3.86
552 845 1.927174 CCATTCGCGTACTCCTGAAAG 59.073 52.381 5.77 0.00 0.00 2.62
556 849 3.374220 TCGCGTACTCCTGAAAGAAAA 57.626 42.857 5.77 0.00 34.07 2.29
559 852 3.120991 CGCGTACTCCTGAAAGAAAACTG 60.121 47.826 0.00 0.00 34.07 3.16
649 955 2.264480 CCATCTGGTGTTCGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
760 1072 4.803426 GCACGCTCTGTCCCTCGG 62.803 72.222 0.00 0.00 0.00 4.63
804 1116 2.930019 CCACAGCAGTCCTCCCCA 60.930 66.667 0.00 0.00 0.00 4.96
813 1125 3.246112 TCCTCCCCAACCACGTGG 61.246 66.667 32.83 32.83 42.17 4.94
883 1195 2.022718 AGCAAACTCTGGAGTCCTCT 57.977 50.000 11.33 0.00 41.58 3.69
925 1241 0.172803 GCCCCGATCGATATAAGCGT 59.827 55.000 18.66 0.00 0.00 5.07
989 1309 7.591421 TGAATCTCTATACCCATAACGACAA 57.409 36.000 0.00 0.00 0.00 3.18
1107 1427 2.436646 CTTGATGCCGCGTCCCTT 60.437 61.111 10.12 0.00 0.00 3.95
1479 1799 1.081641 CGTGAGTGACCGTAACGCT 60.082 57.895 0.00 0.00 0.00 5.07
1728 2051 0.474660 AGAGGCTGGTGGAGAAGGTT 60.475 55.000 0.00 0.00 0.00 3.50
1779 2102 4.790962 AGCGTCGACGAGGGGCTA 62.791 66.667 39.74 0.00 43.02 3.93
1780 2103 4.549516 GCGTCGACGAGGGGCTAC 62.550 72.222 39.74 16.64 43.02 3.58
1808 2131 4.707030 TGCAGCATTTCCTCTTGTAATG 57.293 40.909 0.00 0.00 33.49 1.90
1816 2139 5.794687 TTTCCTCTTGTAATGCGTGTATG 57.205 39.130 0.00 0.00 0.00 2.39
1817 2140 4.465632 TCCTCTTGTAATGCGTGTATGT 57.534 40.909 0.00 0.00 0.00 2.29
1818 2141 4.180817 TCCTCTTGTAATGCGTGTATGTG 58.819 43.478 0.00 0.00 0.00 3.21
1819 2142 3.242413 CCTCTTGTAATGCGTGTATGTGC 60.242 47.826 0.00 0.00 0.00 4.57
1820 2143 3.595173 TCTTGTAATGCGTGTATGTGCT 58.405 40.909 0.00 0.00 0.00 4.40
1821 2144 3.370672 TCTTGTAATGCGTGTATGTGCTG 59.629 43.478 0.00 0.00 0.00 4.41
1822 2145 1.396648 TGTAATGCGTGTATGTGCTGC 59.603 47.619 0.00 0.00 0.00 5.25
1823 2146 0.649993 TAATGCGTGTATGTGCTGCG 59.350 50.000 0.00 0.00 0.00 5.18
1824 2147 1.980951 AATGCGTGTATGTGCTGCGG 61.981 55.000 0.00 0.00 0.00 5.69
1825 2148 2.813474 GCGTGTATGTGCTGCGGA 60.813 61.111 0.00 0.00 0.00 5.54
1826 2149 2.387445 GCGTGTATGTGCTGCGGAA 61.387 57.895 0.00 0.00 0.00 4.30
1827 2150 1.709760 CGTGTATGTGCTGCGGAAG 59.290 57.895 0.00 0.00 0.00 3.46
1828 2151 0.735978 CGTGTATGTGCTGCGGAAGA 60.736 55.000 0.00 0.00 0.00 2.87
1829 2152 1.002366 GTGTATGTGCTGCGGAAGAG 58.998 55.000 0.00 0.00 0.00 2.85
1830 2153 0.608130 TGTATGTGCTGCGGAAGAGT 59.392 50.000 0.00 0.00 0.00 3.24
1831 2154 1.822371 TGTATGTGCTGCGGAAGAGTA 59.178 47.619 0.00 0.00 0.00 2.59
1832 2155 2.194271 GTATGTGCTGCGGAAGAGTAC 58.806 52.381 0.00 0.00 0.00 2.73
1833 2156 0.898320 ATGTGCTGCGGAAGAGTACT 59.102 50.000 0.00 0.00 0.00 2.73
1834 2157 0.679505 TGTGCTGCGGAAGAGTACTT 59.320 50.000 0.00 0.00 39.24 2.24
1850 2173 0.674895 ACTTCGTGAAGATGGGCTGC 60.675 55.000 16.10 0.00 40.79 5.25
1882 2646 7.422399 TGGTTTTGTTTTAGCTTATCTGTGTC 58.578 34.615 0.00 0.00 0.00 3.67
1956 4215 2.035704 ACTGCTCAGTCCATGATCGATC 59.964 50.000 18.72 18.72 36.92 3.69
1981 4240 3.738282 GTGAGCGTAGGATCAATCACATC 59.262 47.826 4.74 0.00 40.82 3.06
1982 4241 3.384467 TGAGCGTAGGATCAATCACATCA 59.616 43.478 0.00 0.00 35.24 3.07
1983 4242 3.722147 AGCGTAGGATCAATCACATCAC 58.278 45.455 0.00 0.00 0.00 3.06
2003 4303 0.324275 CCGACAAATCCAACCCCCAT 60.324 55.000 0.00 0.00 0.00 4.00
2005 4305 1.615651 CGACAAATCCAACCCCCATCA 60.616 52.381 0.00 0.00 0.00 3.07
2017 4317 0.831288 CCCCATCACCCTGTTTTGCA 60.831 55.000 0.00 0.00 0.00 4.08
2018 4318 0.318120 CCCATCACCCTGTTTTGCAC 59.682 55.000 0.00 0.00 0.00 4.57
2019 4319 1.331214 CCATCACCCTGTTTTGCACT 58.669 50.000 0.00 0.00 0.00 4.40
2021 4321 2.890311 CCATCACCCTGTTTTGCACTTA 59.110 45.455 0.00 0.00 0.00 2.24
2023 4323 3.290948 TCACCCTGTTTTGCACTTAGT 57.709 42.857 0.00 0.00 0.00 2.24
2024 4324 3.211045 TCACCCTGTTTTGCACTTAGTC 58.789 45.455 0.00 0.00 0.00 2.59
2025 4325 2.032030 CACCCTGTTTTGCACTTAGTCG 60.032 50.000 0.00 0.00 0.00 4.18
2026 4326 2.158871 ACCCTGTTTTGCACTTAGTCGA 60.159 45.455 0.00 0.00 0.00 4.20
2027 4327 2.875933 CCCTGTTTTGCACTTAGTCGAA 59.124 45.455 0.00 0.00 0.00 3.71
2028 4328 3.303791 CCCTGTTTTGCACTTAGTCGAAC 60.304 47.826 0.00 0.00 0.00 3.95
2029 4329 3.560068 CCTGTTTTGCACTTAGTCGAACT 59.440 43.478 0.00 0.00 0.00 3.01
2030 4330 4.035208 CCTGTTTTGCACTTAGTCGAACTT 59.965 41.667 0.00 0.00 0.00 2.66
2031 4331 5.448632 CCTGTTTTGCACTTAGTCGAACTTT 60.449 40.000 0.00 0.00 0.00 2.66
2032 4332 5.328691 TGTTTTGCACTTAGTCGAACTTTG 58.671 37.500 0.00 0.00 0.00 2.77
2033 4333 5.122554 TGTTTTGCACTTAGTCGAACTTTGA 59.877 36.000 0.00 0.00 0.00 2.69
2034 4334 4.789095 TTGCACTTAGTCGAACTTTGAC 57.211 40.909 1.24 1.24 36.60 3.18
2035 4335 3.128349 TGCACTTAGTCGAACTTTGACC 58.872 45.455 5.63 0.00 37.04 4.02
2036 4336 2.155155 GCACTTAGTCGAACTTTGACCG 59.845 50.000 5.63 0.00 37.04 4.79
2037 4337 3.635331 CACTTAGTCGAACTTTGACCGA 58.365 45.455 5.63 0.00 37.04 4.69
2038 4338 3.669122 CACTTAGTCGAACTTTGACCGAG 59.331 47.826 5.63 6.67 37.04 4.63
2039 4339 3.567164 ACTTAGTCGAACTTTGACCGAGA 59.433 43.478 12.92 0.00 37.04 4.04
2040 4340 2.418983 AGTCGAACTTTGACCGAGAC 57.581 50.000 5.63 0.00 37.04 3.36
2041 4341 1.679680 AGTCGAACTTTGACCGAGACA 59.320 47.619 5.63 0.00 37.04 3.41
2042 4342 2.100252 AGTCGAACTTTGACCGAGACAA 59.900 45.455 5.63 0.00 37.04 3.18
2043 4343 2.861935 GTCGAACTTTGACCGAGACAAA 59.138 45.455 0.00 0.00 36.15 2.83
2044 4344 3.307782 GTCGAACTTTGACCGAGACAAAA 59.692 43.478 0.00 0.00 36.91 2.44
2045 4345 3.307782 TCGAACTTTGACCGAGACAAAAC 59.692 43.478 0.00 0.00 36.91 2.43
2046 4346 3.308866 CGAACTTTGACCGAGACAAAACT 59.691 43.478 0.00 0.00 36.91 2.66
2047 4347 4.550255 CGAACTTTGACCGAGACAAAACTC 60.550 45.833 0.00 0.00 36.91 3.01
2048 4348 3.203716 ACTTTGACCGAGACAAAACTCC 58.796 45.455 0.00 0.00 36.91 3.85
2049 4349 3.118371 ACTTTGACCGAGACAAAACTCCT 60.118 43.478 0.00 0.00 36.91 3.69
2050 4350 3.553828 TTGACCGAGACAAAACTCCTT 57.446 42.857 0.00 0.00 33.83 3.36
2051 4351 3.107642 TGACCGAGACAAAACTCCTTC 57.892 47.619 0.00 0.00 33.83 3.46
2052 4352 2.224209 TGACCGAGACAAAACTCCTTCC 60.224 50.000 0.00 0.00 33.83 3.46
2053 4353 1.071857 ACCGAGACAAAACTCCTTCCC 59.928 52.381 0.00 0.00 33.83 3.97
2054 4354 1.071699 CCGAGACAAAACTCCTTCCCA 59.928 52.381 0.00 0.00 33.83 4.37
2055 4355 2.143925 CGAGACAAAACTCCTTCCCAC 58.856 52.381 0.00 0.00 33.83 4.61
2056 4356 2.484770 CGAGACAAAACTCCTTCCCACA 60.485 50.000 0.00 0.00 33.83 4.17
2057 4357 2.879026 GAGACAAAACTCCTTCCCACAC 59.121 50.000 0.00 0.00 0.00 3.82
2058 4358 2.509964 AGACAAAACTCCTTCCCACACT 59.490 45.455 0.00 0.00 0.00 3.55
2059 4359 3.053619 AGACAAAACTCCTTCCCACACTT 60.054 43.478 0.00 0.00 0.00 3.16
2060 4360 3.699538 GACAAAACTCCTTCCCACACTTT 59.300 43.478 0.00 0.00 0.00 2.66
2061 4361 3.447229 ACAAAACTCCTTCCCACACTTTG 59.553 43.478 0.00 0.00 0.00 2.77
2062 4362 3.662759 AAACTCCTTCCCACACTTTGA 57.337 42.857 0.00 0.00 0.00 2.69
2063 4363 2.938956 ACTCCTTCCCACACTTTGAG 57.061 50.000 0.00 0.00 0.00 3.02
2064 4364 1.202818 ACTCCTTCCCACACTTTGAGC 60.203 52.381 0.00 0.00 0.00 4.26
2065 4365 0.843309 TCCTTCCCACACTTTGAGCA 59.157 50.000 0.00 0.00 0.00 4.26
2066 4366 1.214175 TCCTTCCCACACTTTGAGCAA 59.786 47.619 0.00 0.00 0.00 3.91
2067 4367 2.031120 CCTTCCCACACTTTGAGCAAA 58.969 47.619 0.00 0.00 0.00 3.68
2068 4368 2.430332 CCTTCCCACACTTTGAGCAAAA 59.570 45.455 0.00 0.00 0.00 2.44
2081 4381 3.141398 TGAGCAAAAGGTGTAGCTTCAG 58.859 45.455 0.00 0.00 37.48 3.02
2082 4382 3.142174 GAGCAAAAGGTGTAGCTTCAGT 58.858 45.455 0.00 0.00 37.48 3.41
2091 4391 5.621193 AGGTGTAGCTTCAGTAATTGTGTT 58.379 37.500 0.00 0.00 0.00 3.32
2092 4392 5.470098 AGGTGTAGCTTCAGTAATTGTGTTG 59.530 40.000 0.00 0.00 0.00 3.33
2093 4393 5.334879 GGTGTAGCTTCAGTAATTGTGTTGG 60.335 44.000 0.00 0.00 0.00 3.77
2094 4394 4.759693 TGTAGCTTCAGTAATTGTGTTGGG 59.240 41.667 0.00 0.00 0.00 4.12
2095 4395 2.558359 AGCTTCAGTAATTGTGTTGGGC 59.442 45.455 0.00 0.00 0.00 5.36
2125 4426 7.444629 TGATTCACAAGAATTCTCCTTTCTG 57.555 36.000 8.78 4.73 44.30 3.02
2132 4433 3.054802 AGAATTCTCCTTTCTGTGCGGAT 60.055 43.478 0.88 0.00 32.30 4.18
2133 4434 4.162320 AGAATTCTCCTTTCTGTGCGGATA 59.838 41.667 0.88 0.00 32.30 2.59
2134 4435 3.973206 TTCTCCTTTCTGTGCGGATAA 57.027 42.857 0.00 0.00 0.00 1.75
2135 4436 4.487714 TTCTCCTTTCTGTGCGGATAAT 57.512 40.909 0.00 0.00 0.00 1.28
2151 4452 6.714810 TGCGGATAATTAATAATGGAGCAGTT 59.285 34.615 0.00 0.00 0.00 3.16
2177 4478 5.856126 TGGAAACATCTCATCAAACGTAC 57.144 39.130 0.00 0.00 33.40 3.67
2182 4483 5.407407 ACATCTCATCAAACGTACTTCCT 57.593 39.130 0.00 0.00 0.00 3.36
2184 4485 4.451629 TCTCATCAAACGTACTTCCTCC 57.548 45.455 0.00 0.00 0.00 4.30
2185 4486 3.119602 TCTCATCAAACGTACTTCCTCCG 60.120 47.826 0.00 0.00 0.00 4.63
2186 4487 1.659098 CATCAAACGTACTTCCTCCGC 59.341 52.381 0.00 0.00 0.00 5.54
2187 4488 0.037975 TCAAACGTACTTCCTCCGCC 60.038 55.000 0.00 0.00 0.00 6.13
2188 4489 1.017701 CAAACGTACTTCCTCCGCCC 61.018 60.000 0.00 0.00 0.00 6.13
2191 4492 2.703798 CGTACTTCCTCCGCCCGAA 61.704 63.158 0.00 0.00 0.00 4.30
2194 4495 0.906775 TACTTCCTCCGCCCGAAAAT 59.093 50.000 0.00 0.00 0.00 1.82
2196 4497 1.296727 CTTCCTCCGCCCGAAAATAC 58.703 55.000 0.00 0.00 0.00 1.89
2197 4498 0.906775 TTCCTCCGCCCGAAAATACT 59.093 50.000 0.00 0.00 0.00 2.12
2199 4500 2.109774 TCCTCCGCCCGAAAATACTTA 58.890 47.619 0.00 0.00 0.00 2.24
2200 4501 2.701951 TCCTCCGCCCGAAAATACTTAT 59.298 45.455 0.00 0.00 0.00 1.73
2201 4502 3.064931 CCTCCGCCCGAAAATACTTATC 58.935 50.000 0.00 0.00 0.00 1.75
2203 4504 4.315803 CTCCGCCCGAAAATACTTATCAT 58.684 43.478 0.00 0.00 0.00 2.45
2204 4505 4.312443 TCCGCCCGAAAATACTTATCATC 58.688 43.478 0.00 0.00 0.00 2.92
2205 4506 4.062293 CCGCCCGAAAATACTTATCATCA 58.938 43.478 0.00 0.00 0.00 3.07
2206 4507 4.513692 CCGCCCGAAAATACTTATCATCAA 59.486 41.667 0.00 0.00 0.00 2.57
2207 4508 5.008217 CCGCCCGAAAATACTTATCATCAAA 59.992 40.000 0.00 0.00 0.00 2.69
2208 4509 6.459024 CCGCCCGAAAATACTTATCATCAAAA 60.459 38.462 0.00 0.00 0.00 2.44
2209 4510 6.413818 CGCCCGAAAATACTTATCATCAAAAC 59.586 38.462 0.00 0.00 0.00 2.43
2210 4511 7.254852 GCCCGAAAATACTTATCATCAAAACA 58.745 34.615 0.00 0.00 0.00 2.83
2211 4512 7.757624 GCCCGAAAATACTTATCATCAAAACAA 59.242 33.333 0.00 0.00 0.00 2.83
2212 4513 9.632807 CCCGAAAATACTTATCATCAAAACAAA 57.367 29.630 0.00 0.00 0.00 2.83
2264 4565 4.040445 ACGGTCAAATCAACAAACCAAG 57.960 40.909 0.00 0.00 0.00 3.61
2265 4566 2.794350 CGGTCAAATCAACAAACCAAGC 59.206 45.455 0.00 0.00 0.00 4.01
2396 4722 5.585390 CACATCTGGCATCATCCTTAAAAC 58.415 41.667 0.00 0.00 0.00 2.43
2504 4830 4.346730 ACCATGCAATCATCCAAAGAAGA 58.653 39.130 0.00 0.00 0.00 2.87
2594 4922 6.088824 GCACAGACCATTTAACTTGATCTTG 58.911 40.000 0.00 0.00 0.00 3.02
2597 4925 6.998074 ACAGACCATTTAACTTGATCTTGACA 59.002 34.615 0.00 0.00 0.00 3.58
2733 5061 9.880157 AATAAATGCAGAATCACTAAGCAAAAT 57.120 25.926 0.00 0.00 38.85 1.82
2735 5063 5.963176 TGCAGAATCACTAAGCAAAATCA 57.037 34.783 0.00 0.00 31.42 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.688446 CCCACACTTCTCTAGCATACGA 59.312 50.000 0.00 0.00 0.00 3.43
15 16 2.688446 TCCCACACTTCTCTAGCATACG 59.312 50.000 0.00 0.00 0.00 3.06
63 64 3.679917 CGTTTGAGTAGATGCCTGGATGT 60.680 47.826 0.00 0.00 0.00 3.06
64 65 2.868583 CGTTTGAGTAGATGCCTGGATG 59.131 50.000 0.00 0.00 0.00 3.51
65 66 2.743183 GCGTTTGAGTAGATGCCTGGAT 60.743 50.000 0.00 0.00 0.00 3.41
66 67 1.405526 GCGTTTGAGTAGATGCCTGGA 60.406 52.381 0.00 0.00 0.00 3.86
67 68 1.009829 GCGTTTGAGTAGATGCCTGG 58.990 55.000 0.00 0.00 0.00 4.45
68 69 1.394917 GTGCGTTTGAGTAGATGCCTG 59.605 52.381 0.00 0.00 0.00 4.85
69 70 1.001974 TGTGCGTTTGAGTAGATGCCT 59.998 47.619 0.00 0.00 0.00 4.75
70 71 1.438651 TGTGCGTTTGAGTAGATGCC 58.561 50.000 0.00 0.00 0.00 4.40
71 72 2.416547 ACATGTGCGTTTGAGTAGATGC 59.583 45.455 0.00 0.00 32.33 3.91
72 73 4.152223 TGAACATGTGCGTTTGAGTAGATG 59.848 41.667 0.00 0.00 34.58 2.90
73 74 4.314961 TGAACATGTGCGTTTGAGTAGAT 58.685 39.130 0.00 0.00 0.00 1.98
74 75 3.723260 TGAACATGTGCGTTTGAGTAGA 58.277 40.909 0.00 0.00 0.00 2.59
75 76 3.740832 TCTGAACATGTGCGTTTGAGTAG 59.259 43.478 0.00 0.00 0.00 2.57
76 77 3.723260 TCTGAACATGTGCGTTTGAGTA 58.277 40.909 0.00 0.00 0.00 2.59
77 78 2.545526 CTCTGAACATGTGCGTTTGAGT 59.454 45.455 0.00 0.00 31.21 3.41
78 79 2.802247 TCTCTGAACATGTGCGTTTGAG 59.198 45.455 0.00 4.46 34.19 3.02
79 80 2.832563 TCTCTGAACATGTGCGTTTGA 58.167 42.857 0.00 0.00 0.00 2.69
80 81 3.818961 ATCTCTGAACATGTGCGTTTG 57.181 42.857 0.00 0.00 0.00 2.93
81 82 3.058016 CCAATCTCTGAACATGTGCGTTT 60.058 43.478 0.00 0.00 0.00 3.60
82 83 2.485426 CCAATCTCTGAACATGTGCGTT 59.515 45.455 0.00 0.00 0.00 4.84
83 84 2.079158 CCAATCTCTGAACATGTGCGT 58.921 47.619 0.00 0.00 0.00 5.24
84 85 2.079158 ACCAATCTCTGAACATGTGCG 58.921 47.619 0.00 0.00 0.00 5.34
85 86 2.163010 CCACCAATCTCTGAACATGTGC 59.837 50.000 0.00 0.00 0.00 4.57
86 87 3.415212 ACCACCAATCTCTGAACATGTG 58.585 45.455 0.00 0.00 0.00 3.21
87 88 3.795688 ACCACCAATCTCTGAACATGT 57.204 42.857 0.00 0.00 0.00 3.21
88 89 4.520111 TCAAACCACCAATCTCTGAACATG 59.480 41.667 0.00 0.00 0.00 3.21
89 90 4.520492 GTCAAACCACCAATCTCTGAACAT 59.480 41.667 0.00 0.00 0.00 2.71
94 95 4.136796 TCTTGTCAAACCACCAATCTCTG 58.863 43.478 0.00 0.00 0.00 3.35
96 97 4.389374 TCTCTTGTCAAACCACCAATCTC 58.611 43.478 0.00 0.00 0.00 2.75
107 108 5.064707 CGGTGAAACTTCTTCTCTTGTCAAA 59.935 40.000 0.00 0.00 36.74 2.69
112 113 3.495001 GTCCGGTGAAACTTCTTCTCTTG 59.505 47.826 0.00 0.00 36.74 3.02
120 121 2.950433 TGATACGTCCGGTGAAACTTC 58.050 47.619 0.00 0.00 36.74 3.01
123 124 2.410730 CACTTGATACGTCCGGTGAAAC 59.589 50.000 0.00 0.00 31.72 2.78
124 125 2.036217 ACACTTGATACGTCCGGTGAAA 59.964 45.455 0.00 0.00 33.24 2.69
131 132 2.858344 CGAATCCACACTTGATACGTCC 59.142 50.000 0.00 0.00 0.00 4.79
143 144 2.131972 CACAAACGAGTCGAATCCACA 58.868 47.619 21.50 0.00 0.00 4.17
156 157 3.723835 GCAAGCGGTACTAATCACAAACG 60.724 47.826 0.00 0.00 0.00 3.60
167 168 0.944311 CACAACGAGCAAGCGGTACT 60.944 55.000 0.00 0.00 35.12 2.73
178 179 0.318441 TCCTCTGCTTCCACAACGAG 59.682 55.000 0.00 0.00 0.00 4.18
211 212 8.855110 GGTGATCTCTTCTCATGAACTCTATTA 58.145 37.037 0.00 0.00 0.00 0.98
214 215 6.430864 AGGTGATCTCTTCTCATGAACTCTA 58.569 40.000 0.00 0.00 0.00 2.43
218 219 4.161189 TGGAGGTGATCTCTTCTCATGAAC 59.839 45.833 6.82 0.00 42.10 3.18
224 225 3.513515 AGTTGTGGAGGTGATCTCTTCTC 59.486 47.826 6.82 0.77 42.10 2.87
227 228 3.392616 ACAAGTTGTGGAGGTGATCTCTT 59.607 43.478 7.96 0.00 42.10 2.85
238 239 1.064758 ACCTGCTCAACAAGTTGTGGA 60.065 47.619 12.58 12.58 41.16 4.02
268 269 0.178992 CAAGCCTCCAGTCCCAAACA 60.179 55.000 0.00 0.00 0.00 2.83
271 272 2.156098 AGCAAGCCTCCAGTCCCAA 61.156 57.895 0.00 0.00 0.00 4.12
272 273 2.530151 AGCAAGCCTCCAGTCCCA 60.530 61.111 0.00 0.00 0.00 4.37
280 281 1.642952 CTTCGAAGCCAGCAAGCCTC 61.643 60.000 13.09 0.00 0.00 4.70
282 283 0.673644 TACTTCGAAGCCAGCAAGCC 60.674 55.000 24.86 0.00 0.00 4.35
286 287 1.066858 CCTTCTACTTCGAAGCCAGCA 60.067 52.381 24.86 11.61 39.21 4.41
296 297 9.026074 CACGAAAGAATCTAATCCTTCTACTTC 57.974 37.037 0.00 0.00 31.60 3.01
297 298 8.750298 TCACGAAAGAATCTAATCCTTCTACTT 58.250 33.333 0.00 0.00 31.60 2.24
298 299 8.294954 TCACGAAAGAATCTAATCCTTCTACT 57.705 34.615 0.00 0.00 31.60 2.57
303 304 7.123547 ACTCTCTCACGAAAGAATCTAATCCTT 59.876 37.037 0.00 0.00 0.00 3.36
314 315 4.083217 GCTAAGTCACTCTCTCACGAAAGA 60.083 45.833 0.00 0.00 0.00 2.52
327 328 2.569404 AGCTAAGCAAGGCTAAGTCACT 59.431 45.455 0.00 0.00 38.25 3.41
329 330 2.567169 TCAGCTAAGCAAGGCTAAGTCA 59.433 45.455 0.00 0.00 38.25 3.41
330 331 3.252974 TCAGCTAAGCAAGGCTAAGTC 57.747 47.619 0.00 0.00 38.25 3.01
331 332 3.054802 ACATCAGCTAAGCAAGGCTAAGT 60.055 43.478 0.00 0.00 38.25 2.24
332 333 3.539604 ACATCAGCTAAGCAAGGCTAAG 58.460 45.455 0.00 0.00 38.25 2.18
333 334 3.634397 ACATCAGCTAAGCAAGGCTAA 57.366 42.857 0.00 0.00 38.25 3.09
337 338 2.163010 CACCAACATCAGCTAAGCAAGG 59.837 50.000 0.00 0.00 0.00 3.61
342 343 3.005554 CCAGACACCAACATCAGCTAAG 58.994 50.000 0.00 0.00 0.00 2.18
356 357 1.654105 CGACTCGCATAAACCAGACAC 59.346 52.381 0.00 0.00 0.00 3.67
360 361 2.561733 TCTCGACTCGCATAAACCAG 57.438 50.000 0.00 0.00 0.00 4.00
361 362 2.165641 ACATCTCGACTCGCATAAACCA 59.834 45.455 0.00 0.00 0.00 3.67
370 371 4.434725 CCAAAATGTGAACATCTCGACTCG 60.435 45.833 0.00 0.00 35.10 4.18
371 372 4.452455 ACCAAAATGTGAACATCTCGACTC 59.548 41.667 0.00 0.00 35.10 3.36
385 386 3.233507 ACAAGATGCCTGACCAAAATGT 58.766 40.909 0.00 0.00 0.00 2.71
389 390 7.232534 AGTTTAATTACAAGATGCCTGACCAAA 59.767 33.333 0.00 0.00 0.00 3.28
396 397 8.409358 ACAGAAAGTTTAATTACAAGATGCCT 57.591 30.769 0.00 0.00 0.00 4.75
397 398 8.515414 AGACAGAAAGTTTAATTACAAGATGCC 58.485 33.333 0.00 0.00 0.00 4.40
430 723 9.061610 CGTGCGTATTTGAGAAAGAAAAATATT 57.938 29.630 0.00 0.00 30.72 1.28
435 728 5.201910 CACGTGCGTATTTGAGAAAGAAAA 58.798 37.500 0.82 0.00 0.00 2.29
437 730 3.805422 ACACGTGCGTATTTGAGAAAGAA 59.195 39.130 17.22 0.00 0.00 2.52
438 731 3.386486 ACACGTGCGTATTTGAGAAAGA 58.614 40.909 17.22 0.00 0.00 2.52
439 732 3.183574 TGACACGTGCGTATTTGAGAAAG 59.816 43.478 17.22 0.00 0.00 2.62
440 733 3.124560 TGACACGTGCGTATTTGAGAAA 58.875 40.909 17.22 0.00 0.00 2.52
441 734 2.745102 TGACACGTGCGTATTTGAGAA 58.255 42.857 17.22 0.00 0.00 2.87
442 735 2.425578 TGACACGTGCGTATTTGAGA 57.574 45.000 17.22 0.00 0.00 3.27
443 736 3.722555 AATGACACGTGCGTATTTGAG 57.277 42.857 17.22 0.00 0.00 3.02
444 737 5.788055 ATAAATGACACGTGCGTATTTGA 57.212 34.783 23.93 14.24 0.00 2.69
445 738 9.301606 CTATAATAAATGACACGTGCGTATTTG 57.698 33.333 23.93 10.75 0.00 2.32
446 739 9.251792 TCTATAATAAATGACACGTGCGTATTT 57.748 29.630 17.22 19.85 0.00 1.40
447 740 8.806177 TCTATAATAAATGACACGTGCGTATT 57.194 30.769 17.22 10.85 0.00 1.89
448 741 8.806177 TTCTATAATAAATGACACGTGCGTAT 57.194 30.769 17.22 4.63 0.00 3.06
449 742 8.130469 TCTTCTATAATAAATGACACGTGCGTA 58.870 33.333 17.22 2.00 0.00 4.42
450 743 6.976349 TCTTCTATAATAAATGACACGTGCGT 59.024 34.615 17.22 7.18 0.00 5.24
451 744 7.389603 TCTTCTATAATAAATGACACGTGCG 57.610 36.000 17.22 0.00 0.00 5.34
452 745 9.638300 CTTTCTTCTATAATAAATGACACGTGC 57.362 33.333 17.22 9.30 0.00 5.34
454 747 9.326413 CCCTTTCTTCTATAATAAATGACACGT 57.674 33.333 0.00 0.00 0.00 4.49
455 748 8.774586 CCCCTTTCTTCTATAATAAATGACACG 58.225 37.037 0.00 0.00 0.00 4.49
456 749 9.847224 TCCCCTTTCTTCTATAATAAATGACAC 57.153 33.333 0.00 0.00 0.00 3.67
465 758 9.113797 GGGTACTTATCCCCTTTCTTCTATAAT 57.886 37.037 0.00 0.00 39.08 1.28
466 759 8.502047 GGGTACTTATCCCCTTTCTTCTATAA 57.498 38.462 0.00 0.00 39.08 0.98
480 773 4.079958 ACTGTGGATTTGGGGTACTTATCC 60.080 45.833 0.00 0.00 36.22 2.59
481 774 5.112129 ACTGTGGATTTGGGGTACTTATC 57.888 43.478 0.00 0.00 0.00 1.75
482 775 5.530176 AACTGTGGATTTGGGGTACTTAT 57.470 39.130 0.00 0.00 0.00 1.73
483 776 5.310068 TGTAACTGTGGATTTGGGGTACTTA 59.690 40.000 0.00 0.00 0.00 2.24
484 777 3.895704 AACTGTGGATTTGGGGTACTT 57.104 42.857 0.00 0.00 0.00 2.24
485 778 3.653836 TGTAACTGTGGATTTGGGGTACT 59.346 43.478 0.00 0.00 0.00 2.73
486 779 4.023726 TGTAACTGTGGATTTGGGGTAC 57.976 45.455 0.00 0.00 0.00 3.34
487 780 4.105057 ACTTGTAACTGTGGATTTGGGGTA 59.895 41.667 0.00 0.00 0.00 3.69
488 781 3.117284 ACTTGTAACTGTGGATTTGGGGT 60.117 43.478 0.00 0.00 0.00 4.95
489 782 3.496331 ACTTGTAACTGTGGATTTGGGG 58.504 45.455 0.00 0.00 0.00 4.96
490 783 4.398319 AGACTTGTAACTGTGGATTTGGG 58.602 43.478 0.00 0.00 0.00 4.12
491 784 4.455877 GGAGACTTGTAACTGTGGATTTGG 59.544 45.833 0.00 0.00 0.00 3.28
492 785 5.308825 AGGAGACTTGTAACTGTGGATTTG 58.691 41.667 0.00 0.00 37.44 2.32
493 786 5.568620 AGGAGACTTGTAACTGTGGATTT 57.431 39.130 0.00 0.00 37.44 2.17
494 787 6.875972 ATAGGAGACTTGTAACTGTGGATT 57.124 37.500 0.00 0.00 43.67 3.01
495 788 7.973048 TTATAGGAGACTTGTAACTGTGGAT 57.027 36.000 0.00 0.00 43.67 3.41
496 789 7.786046 TTTATAGGAGACTTGTAACTGTGGA 57.214 36.000 0.00 0.00 43.67 4.02
506 799 9.088512 GCGGAACATATATTTATAGGAGACTTG 57.911 37.037 0.00 0.00 43.67 3.16
507 800 8.258708 GGCGGAACATATATTTATAGGAGACTT 58.741 37.037 0.00 0.00 43.67 3.01
509 802 7.553334 TGGCGGAACATATATTTATAGGAGAC 58.447 38.462 0.00 0.00 0.00 3.36
510 803 7.727578 TGGCGGAACATATATTTATAGGAGA 57.272 36.000 0.00 0.00 0.00 3.71
511 804 8.964476 AATGGCGGAACATATATTTATAGGAG 57.036 34.615 0.00 0.00 0.00 3.69
512 805 7.709182 CGAATGGCGGAACATATATTTATAGGA 59.291 37.037 0.00 0.00 36.03 2.94
513 806 7.518370 GCGAATGGCGGAACATATATTTATAGG 60.518 40.741 0.00 0.00 41.29 2.57
514 807 7.345192 GCGAATGGCGGAACATATATTTATAG 58.655 38.462 0.00 0.00 41.29 1.31
515 808 7.241663 GCGAATGGCGGAACATATATTTATA 57.758 36.000 0.00 0.00 41.29 0.98
516 809 6.119144 GCGAATGGCGGAACATATATTTAT 57.881 37.500 0.00 0.00 41.29 1.40
517 810 5.539582 GCGAATGGCGGAACATATATTTA 57.460 39.130 0.00 0.00 41.29 1.40
518 811 4.419522 GCGAATGGCGGAACATATATTT 57.580 40.909 0.00 0.00 41.29 1.40
531 824 0.459585 TTCAGGAGTACGCGAATGGC 60.460 55.000 15.93 0.00 38.69 4.40
532 825 1.927174 CTTTCAGGAGTACGCGAATGG 59.073 52.381 15.93 0.00 0.00 3.16
533 826 2.876091 TCTTTCAGGAGTACGCGAATG 58.124 47.619 15.93 1.67 0.00 2.67
534 827 3.587797 TTCTTTCAGGAGTACGCGAAT 57.412 42.857 15.93 0.00 0.00 3.34
535 828 3.374220 TTTCTTTCAGGAGTACGCGAA 57.626 42.857 15.93 0.00 0.00 4.70
536 829 3.054878 GTTTTCTTTCAGGAGTACGCGA 58.945 45.455 15.93 0.00 0.00 5.87
537 830 3.057734 AGTTTTCTTTCAGGAGTACGCG 58.942 45.455 3.53 3.53 0.00 6.01
538 831 4.056050 TCAGTTTTCTTTCAGGAGTACGC 58.944 43.478 0.00 0.00 0.00 4.42
539 832 6.419771 GTTTCAGTTTTCTTTCAGGAGTACG 58.580 40.000 0.00 0.00 0.00 3.67
540 833 6.511282 CGGTTTCAGTTTTCTTTCAGGAGTAC 60.511 42.308 0.00 0.00 0.00 2.73
541 834 5.526111 CGGTTTCAGTTTTCTTTCAGGAGTA 59.474 40.000 0.00 0.00 0.00 2.59
542 835 4.335594 CGGTTTCAGTTTTCTTTCAGGAGT 59.664 41.667 0.00 0.00 0.00 3.85
543 836 4.261197 CCGGTTTCAGTTTTCTTTCAGGAG 60.261 45.833 0.00 0.00 0.00 3.69
544 837 3.630312 CCGGTTTCAGTTTTCTTTCAGGA 59.370 43.478 0.00 0.00 0.00 3.86
545 838 3.795488 GCCGGTTTCAGTTTTCTTTCAGG 60.795 47.826 1.90 0.00 0.00 3.86
546 839 3.372060 GCCGGTTTCAGTTTTCTTTCAG 58.628 45.455 1.90 0.00 0.00 3.02
547 840 2.223386 CGCCGGTTTCAGTTTTCTTTCA 60.223 45.455 1.90 0.00 0.00 2.69
548 841 2.223409 ACGCCGGTTTCAGTTTTCTTTC 60.223 45.455 1.90 0.00 0.00 2.62
549 842 1.746787 ACGCCGGTTTCAGTTTTCTTT 59.253 42.857 1.90 0.00 0.00 2.52
552 845 1.397567 CGTACGCCGGTTTCAGTTTTC 60.398 52.381 0.52 0.00 0.00 2.29
649 955 3.056322 GGTGGTCATCTGTACCTACGTTT 60.056 47.826 0.00 0.00 37.91 3.60
883 1195 1.676746 CGTACGATTCAGGAGAGGGA 58.323 55.000 10.44 0.00 0.00 4.20
925 1241 4.753877 CGACAGTCCGCGCTCGAA 62.754 66.667 5.56 0.00 38.10 3.71
989 1309 3.762992 CGCGCATGTGTTCGACGT 61.763 61.111 8.75 0.00 0.00 4.34
1270 1590 0.944311 GAGTGGAACAGCGCGAAGAA 60.944 55.000 12.10 0.00 41.80 2.52
1680 2003 2.114625 ACCTCGACCACGACCTCA 59.885 61.111 0.00 0.00 43.81 3.86
1728 2051 1.373435 CAACAACACCCCGAGCCTA 59.627 57.895 0.00 0.00 0.00 3.93
1779 2102 2.939103 GAGGAAATGCTGCAAGTATCGT 59.061 45.455 6.36 4.45 38.77 3.73
1780 2103 3.201290 AGAGGAAATGCTGCAAGTATCG 58.799 45.455 6.36 0.00 38.77 2.92
1808 2131 2.296692 CTTCCGCAGCACATACACGC 62.297 60.000 0.00 0.00 0.00 5.34
1816 2139 1.351153 GAAGTACTCTTCCGCAGCAC 58.649 55.000 0.00 0.00 42.85 4.40
1817 2140 0.109272 CGAAGTACTCTTCCGCAGCA 60.109 55.000 0.00 0.00 45.02 4.41
1818 2141 0.109226 ACGAAGTACTCTTCCGCAGC 60.109 55.000 0.00 0.00 45.02 5.25
1819 2142 1.199327 TCACGAAGTACTCTTCCGCAG 59.801 52.381 0.00 0.00 45.02 5.18
1820 2143 1.241165 TCACGAAGTACTCTTCCGCA 58.759 50.000 0.00 0.00 45.02 5.69
1821 2144 2.095364 TCTTCACGAAGTACTCTTCCGC 60.095 50.000 6.68 0.00 45.02 5.54
1822 2145 3.826236 TCTTCACGAAGTACTCTTCCG 57.174 47.619 6.68 0.60 45.02 4.30
1823 2146 4.425520 CCATCTTCACGAAGTACTCTTCC 58.574 47.826 6.68 0.00 45.02 3.46
1824 2147 4.425520 CCCATCTTCACGAAGTACTCTTC 58.574 47.826 6.68 0.00 41.61 2.87
1825 2148 3.368531 GCCCATCTTCACGAAGTACTCTT 60.369 47.826 6.68 0.00 41.61 2.85
1826 2149 2.166664 GCCCATCTTCACGAAGTACTCT 59.833 50.000 6.68 0.00 41.61 3.24
1827 2150 2.166664 AGCCCATCTTCACGAAGTACTC 59.833 50.000 6.68 0.00 41.61 2.59
1828 2151 2.093973 CAGCCCATCTTCACGAAGTACT 60.094 50.000 6.68 0.00 41.61 2.73
1829 2152 2.271800 CAGCCCATCTTCACGAAGTAC 58.728 52.381 6.68 0.00 41.61 2.73
1830 2153 1.405526 GCAGCCCATCTTCACGAAGTA 60.406 52.381 6.68 0.00 41.61 2.24
1832 2155 0.392193 AGCAGCCCATCTTCACGAAG 60.392 55.000 0.08 0.08 39.71 3.79
1833 2156 0.674581 CAGCAGCCCATCTTCACGAA 60.675 55.000 0.00 0.00 0.00 3.85
1834 2157 1.078918 CAGCAGCCCATCTTCACGA 60.079 57.895 0.00 0.00 0.00 4.35
1835 2158 2.110967 CCAGCAGCCCATCTTCACG 61.111 63.158 0.00 0.00 0.00 4.35
1836 2159 2.413142 GCCAGCAGCCCATCTTCAC 61.413 63.158 0.00 0.00 34.35 3.18
1837 2160 2.044650 GCCAGCAGCCCATCTTCA 60.045 61.111 0.00 0.00 34.35 3.02
1850 2173 3.066380 GCTAAAACAAAACCATGGCCAG 58.934 45.455 13.05 0.00 0.00 4.85
1882 2646 3.120923 GGTTACAACACGAACACGTATGG 60.121 47.826 0.00 0.00 38.51 2.74
1956 4215 3.492383 GTGATTGATCCTACGCTCACATG 59.508 47.826 0.00 0.00 34.57 3.21
1964 4223 3.393800 GGGTGATGTGATTGATCCTACG 58.606 50.000 0.00 0.00 0.00 3.51
1981 4240 1.248101 GGGGTTGGATTTGTCGGGTG 61.248 60.000 0.00 0.00 0.00 4.61
1982 4241 1.076014 GGGGTTGGATTTGTCGGGT 59.924 57.895 0.00 0.00 0.00 5.28
1983 4242 1.680989 GGGGGTTGGATTTGTCGGG 60.681 63.158 0.00 0.00 0.00 5.14
2003 4303 3.211045 GACTAAGTGCAAAACAGGGTGA 58.789 45.455 0.00 0.00 0.00 4.02
2005 4305 2.158871 TCGACTAAGTGCAAAACAGGGT 60.159 45.455 0.00 0.00 0.00 4.34
2017 4317 3.567164 TCTCGGTCAAAGTTCGACTAAGT 59.433 43.478 0.00 0.00 33.73 2.24
2018 4318 3.913163 GTCTCGGTCAAAGTTCGACTAAG 59.087 47.826 0.00 0.00 33.73 2.18
2019 4319 3.316029 TGTCTCGGTCAAAGTTCGACTAA 59.684 43.478 0.00 0.00 33.73 2.24
2021 4321 1.679680 TGTCTCGGTCAAAGTTCGACT 59.320 47.619 0.00 0.00 33.73 4.18
2023 4323 2.875087 TTGTCTCGGTCAAAGTTCGA 57.125 45.000 0.00 0.00 0.00 3.71
2024 4324 3.308866 AGTTTTGTCTCGGTCAAAGTTCG 59.691 43.478 0.00 0.00 36.40 3.95
2025 4325 4.260661 GGAGTTTTGTCTCGGTCAAAGTTC 60.261 45.833 0.00 0.00 36.40 3.01
2026 4326 3.626217 GGAGTTTTGTCTCGGTCAAAGTT 59.374 43.478 0.00 0.00 36.40 2.66
2027 4327 3.118371 AGGAGTTTTGTCTCGGTCAAAGT 60.118 43.478 0.00 0.00 36.40 2.66
2028 4328 3.467803 AGGAGTTTTGTCTCGGTCAAAG 58.532 45.455 0.00 0.00 36.40 2.77
2029 4329 3.553828 AGGAGTTTTGTCTCGGTCAAA 57.446 42.857 0.00 0.00 35.52 2.69
2030 4330 3.463944 GAAGGAGTTTTGTCTCGGTCAA 58.536 45.455 0.00 0.00 35.52 3.18
2031 4331 2.224209 GGAAGGAGTTTTGTCTCGGTCA 60.224 50.000 0.00 0.00 35.52 4.02
2032 4332 2.414806 GGAAGGAGTTTTGTCTCGGTC 58.585 52.381 0.00 0.00 35.52 4.79
2033 4333 1.071857 GGGAAGGAGTTTTGTCTCGGT 59.928 52.381 0.00 0.00 35.52 4.69
2034 4334 1.071699 TGGGAAGGAGTTTTGTCTCGG 59.928 52.381 0.00 0.00 35.52 4.63
2035 4335 2.143925 GTGGGAAGGAGTTTTGTCTCG 58.856 52.381 0.00 0.00 35.52 4.04
2036 4336 2.879026 GTGTGGGAAGGAGTTTTGTCTC 59.121 50.000 0.00 0.00 0.00 3.36
2037 4337 2.509964 AGTGTGGGAAGGAGTTTTGTCT 59.490 45.455 0.00 0.00 0.00 3.41
2038 4338 2.932261 AGTGTGGGAAGGAGTTTTGTC 58.068 47.619 0.00 0.00 0.00 3.18
2039 4339 3.382083 AAGTGTGGGAAGGAGTTTTGT 57.618 42.857 0.00 0.00 0.00 2.83
2040 4340 3.699038 TCAAAGTGTGGGAAGGAGTTTTG 59.301 43.478 0.00 0.00 0.00 2.44
2041 4341 3.954258 CTCAAAGTGTGGGAAGGAGTTTT 59.046 43.478 0.00 0.00 0.00 2.43
2042 4342 3.555966 CTCAAAGTGTGGGAAGGAGTTT 58.444 45.455 0.00 0.00 0.00 2.66
2043 4343 2.749800 GCTCAAAGTGTGGGAAGGAGTT 60.750 50.000 0.00 0.00 0.00 3.01
2044 4344 1.202818 GCTCAAAGTGTGGGAAGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
2045 4345 1.202806 TGCTCAAAGTGTGGGAAGGAG 60.203 52.381 0.00 0.00 0.00 3.69
2046 4346 0.843309 TGCTCAAAGTGTGGGAAGGA 59.157 50.000 0.00 0.00 0.00 3.36
2047 4347 1.691196 TTGCTCAAAGTGTGGGAAGG 58.309 50.000 0.00 0.00 0.00 3.46
2048 4348 3.491447 CCTTTTGCTCAAAGTGTGGGAAG 60.491 47.826 7.81 0.00 40.51 3.46
2049 4349 2.430332 CCTTTTGCTCAAAGTGTGGGAA 59.570 45.455 7.81 0.00 40.51 3.97
2050 4350 2.031120 CCTTTTGCTCAAAGTGTGGGA 58.969 47.619 7.81 0.00 40.51 4.37
2051 4351 1.756538 ACCTTTTGCTCAAAGTGTGGG 59.243 47.619 7.81 0.00 40.51 4.61
2052 4352 2.166254 ACACCTTTTGCTCAAAGTGTGG 59.834 45.455 20.25 13.14 42.35 4.17
2053 4353 3.508744 ACACCTTTTGCTCAAAGTGTG 57.491 42.857 15.16 16.25 42.98 3.82
2054 4354 3.066760 GCTACACCTTTTGCTCAAAGTGT 59.933 43.478 18.09 18.09 40.51 3.55
2055 4355 3.316308 AGCTACACCTTTTGCTCAAAGTG 59.684 43.478 11.01 11.01 40.51 3.16
2056 4356 3.555966 AGCTACACCTTTTGCTCAAAGT 58.444 40.909 7.81 0.00 40.51 2.66
2057 4357 4.036734 TGAAGCTACACCTTTTGCTCAAAG 59.963 41.667 0.00 2.80 41.64 2.77
2058 4358 3.951037 TGAAGCTACACCTTTTGCTCAAA 59.049 39.130 0.00 0.00 34.38 2.69
2059 4359 3.550820 TGAAGCTACACCTTTTGCTCAA 58.449 40.909 0.00 0.00 34.38 3.02
2060 4360 3.141398 CTGAAGCTACACCTTTTGCTCA 58.859 45.455 0.00 0.00 34.38 4.26
2061 4361 3.142174 ACTGAAGCTACACCTTTTGCTC 58.858 45.455 0.00 0.00 34.38 4.26
2062 4362 3.214696 ACTGAAGCTACACCTTTTGCT 57.785 42.857 0.00 0.00 37.37 3.91
2063 4363 5.629079 ATTACTGAAGCTACACCTTTTGC 57.371 39.130 0.00 0.00 0.00 3.68
2064 4364 6.857964 CACAATTACTGAAGCTACACCTTTTG 59.142 38.462 0.00 0.00 0.00 2.44
2065 4365 6.546034 ACACAATTACTGAAGCTACACCTTTT 59.454 34.615 0.00 0.00 0.00 2.27
2066 4366 6.062095 ACACAATTACTGAAGCTACACCTTT 58.938 36.000 0.00 0.00 0.00 3.11
2067 4367 5.621193 ACACAATTACTGAAGCTACACCTT 58.379 37.500 0.00 0.00 0.00 3.50
2068 4368 5.228945 ACACAATTACTGAAGCTACACCT 57.771 39.130 0.00 0.00 0.00 4.00
2069 4369 5.334879 CCAACACAATTACTGAAGCTACACC 60.335 44.000 0.00 0.00 0.00 4.16
2070 4370 5.334879 CCCAACACAATTACTGAAGCTACAC 60.335 44.000 0.00 0.00 0.00 2.90
2071 4371 4.759693 CCCAACACAATTACTGAAGCTACA 59.240 41.667 0.00 0.00 0.00 2.74
2072 4372 4.379499 GCCCAACACAATTACTGAAGCTAC 60.379 45.833 0.00 0.00 0.00 3.58
2073 4373 3.756434 GCCCAACACAATTACTGAAGCTA 59.244 43.478 0.00 0.00 0.00 3.32
2074 4374 2.558359 GCCCAACACAATTACTGAAGCT 59.442 45.455 0.00 0.00 0.00 3.74
2075 4375 2.295909 TGCCCAACACAATTACTGAAGC 59.704 45.455 0.00 0.00 0.00 3.86
2076 4376 4.487948 CATGCCCAACACAATTACTGAAG 58.512 43.478 0.00 0.00 0.00 3.02
2081 4381 2.995258 CAAGCATGCCCAACACAATTAC 59.005 45.455 15.66 0.00 0.00 1.89
2082 4382 2.896044 TCAAGCATGCCCAACACAATTA 59.104 40.909 15.66 0.00 0.00 1.40
2091 4391 1.546923 CTTGTGAATCAAGCATGCCCA 59.453 47.619 15.66 0.00 45.37 5.36
2092 4392 2.288961 CTTGTGAATCAAGCATGCCC 57.711 50.000 15.66 0.00 45.37 5.36
2116 4417 6.867662 ATTAATTATCCGCACAGAAAGGAG 57.132 37.500 0.00 0.00 37.49 3.69
2123 4424 6.149308 TGCTCCATTATTAATTATCCGCACAG 59.851 38.462 0.00 0.00 0.00 3.66
2125 4426 6.149474 ACTGCTCCATTATTAATTATCCGCAC 59.851 38.462 0.00 0.00 0.00 5.34
2132 4433 9.639563 TCCATCAAACTGCTCCATTATTAATTA 57.360 29.630 0.00 0.00 0.00 1.40
2133 4434 8.537728 TCCATCAAACTGCTCCATTATTAATT 57.462 30.769 0.00 0.00 0.00 1.40
2134 4435 8.537728 TTCCATCAAACTGCTCCATTATTAAT 57.462 30.769 0.00 0.00 0.00 1.40
2135 4436 7.953005 TTCCATCAAACTGCTCCATTATTAA 57.047 32.000 0.00 0.00 0.00 1.40
2164 4465 3.179830 CGGAGGAAGTACGTTTGATGAG 58.820 50.000 0.00 0.00 0.00 2.90
2165 4466 2.673043 GCGGAGGAAGTACGTTTGATGA 60.673 50.000 0.00 0.00 0.00 2.92
2169 4470 1.017701 GGGCGGAGGAAGTACGTTTG 61.018 60.000 0.00 0.00 0.00 2.93
2170 4471 1.294459 GGGCGGAGGAAGTACGTTT 59.706 57.895 0.00 0.00 0.00 3.60
2171 4472 2.976356 GGGCGGAGGAAGTACGTT 59.024 61.111 0.00 0.00 0.00 3.99
2172 4473 3.446570 CGGGCGGAGGAAGTACGT 61.447 66.667 0.00 0.00 0.00 3.57
2173 4474 2.216750 TTTCGGGCGGAGGAAGTACG 62.217 60.000 0.00 0.00 0.00 3.67
2175 4476 0.906775 ATTTTCGGGCGGAGGAAGTA 59.093 50.000 0.00 0.00 0.00 2.24
2176 4477 0.906775 TATTTTCGGGCGGAGGAAGT 59.093 50.000 0.00 0.00 0.00 3.01
2177 4478 1.134491 AGTATTTTCGGGCGGAGGAAG 60.134 52.381 0.00 0.00 0.00 3.46
2182 4483 3.823281 TGATAAGTATTTTCGGGCGGA 57.177 42.857 0.00 0.00 0.00 5.54
2184 4485 5.666969 TTGATGATAAGTATTTTCGGGCG 57.333 39.130 0.00 0.00 0.00 6.13
2185 4486 7.254852 TGTTTTGATGATAAGTATTTTCGGGC 58.745 34.615 0.00 0.00 0.00 6.13
2186 4487 9.632807 TTTGTTTTGATGATAAGTATTTTCGGG 57.367 29.630 0.00 0.00 0.00 5.14
2218 4519 9.575783 GTCTCGACTTGAACTAAATAGATTTCT 57.424 33.333 0.00 0.00 0.00 2.52
2219 4520 8.525071 CGTCTCGACTTGAACTAAATAGATTTC 58.475 37.037 0.00 0.00 0.00 2.17
2220 4521 7.488471 CCGTCTCGACTTGAACTAAATAGATTT 59.512 37.037 0.00 0.00 0.00 2.17
2221 4522 6.973474 CCGTCTCGACTTGAACTAAATAGATT 59.027 38.462 0.00 0.00 0.00 2.40
2222 4523 6.095160 ACCGTCTCGACTTGAACTAAATAGAT 59.905 38.462 0.00 0.00 0.00 1.98
2223 4524 5.413833 ACCGTCTCGACTTGAACTAAATAGA 59.586 40.000 0.00 0.00 0.00 1.98
2224 4525 5.638783 ACCGTCTCGACTTGAACTAAATAG 58.361 41.667 0.00 0.00 0.00 1.73
2225 4526 5.181811 TGACCGTCTCGACTTGAACTAAATA 59.818 40.000 0.00 0.00 0.00 1.40
2226 4527 4.022589 TGACCGTCTCGACTTGAACTAAAT 60.023 41.667 0.00 0.00 0.00 1.40
2227 4528 3.316029 TGACCGTCTCGACTTGAACTAAA 59.684 43.478 0.00 0.00 0.00 1.85
2228 4529 2.880268 TGACCGTCTCGACTTGAACTAA 59.120 45.455 0.00 0.00 0.00 2.24
2229 4530 2.497138 TGACCGTCTCGACTTGAACTA 58.503 47.619 0.00 0.00 0.00 2.24
2230 4531 1.315690 TGACCGTCTCGACTTGAACT 58.684 50.000 0.00 0.00 0.00 3.01
2231 4532 2.129823 TTGACCGTCTCGACTTGAAC 57.870 50.000 0.00 0.00 0.00 3.18
2232 4533 2.875087 TTTGACCGTCTCGACTTGAA 57.125 45.000 0.00 0.00 0.00 2.69
2233 4534 2.295070 TGATTTGACCGTCTCGACTTGA 59.705 45.455 0.00 0.00 0.00 3.02
2355 4681 9.276590 CCAGATGTGCTCATGAATAAATTAGTA 57.723 33.333 5.89 0.00 34.06 1.82
2361 4687 4.271661 TGCCAGATGTGCTCATGAATAAA 58.728 39.130 5.89 0.00 34.06 1.40
2396 4722 7.040755 CCTCCTATCTAATCTAGTCATATGGCG 60.041 44.444 0.74 0.00 0.00 5.69
2457 4783 1.798223 TGTCGAAATGCTTCTCCGTTG 59.202 47.619 0.00 0.00 0.00 4.10
2504 4830 6.276847 TGTTTTGCGAACCATCTTTGTTATT 58.723 32.000 0.00 0.00 0.00 1.40
2594 4922 3.739300 TCTTGGAAGACGTCGAAAATGTC 59.261 43.478 10.46 0.00 43.19 3.06
2710 5038 7.380536 TGATTTTGCTTAGTGATTCTGCATTT 58.619 30.769 0.00 0.00 33.50 2.32
2711 5039 6.927416 TGATTTTGCTTAGTGATTCTGCATT 58.073 32.000 0.00 0.00 33.50 3.56
2712 5040 6.519679 TGATTTTGCTTAGTGATTCTGCAT 57.480 33.333 0.00 0.00 33.50 3.96
2713 5041 5.963176 TGATTTTGCTTAGTGATTCTGCA 57.037 34.783 0.00 0.00 0.00 4.41
2727 5055 9.683069 TTTCTTCAGAAGTTCTTATGATTTTGC 57.317 29.630 10.09 0.00 35.21 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.