Multiple sequence alignment - TraesCS3B01G359900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G359900 chr3B 100.000 2587 0 0 1 2587 571808668 571811254 0.000000e+00 4778.0
1 TraesCS3B01G359900 chr3D 92.875 2035 99 19 576 2587 436042072 436044083 0.000000e+00 2913.0
2 TraesCS3B01G359900 chr3D 92.640 625 45 1 1952 2575 436162662 436163286 0.000000e+00 898.0
3 TraesCS3B01G359900 chr3D 91.394 581 44 2 3 583 436039598 436040172 0.000000e+00 791.0
4 TraesCS3B01G359900 chr3D 81.006 179 30 3 1840 2017 307567021 307566846 3.470000e-29 139.0
5 TraesCS3B01G359900 chr3A 92.627 1519 92 10 1082 2587 574864316 574865827 0.000000e+00 2167.0
6 TraesCS3B01G359900 chr3A 89.323 1152 76 15 2 1125 574863259 574864391 0.000000e+00 1402.0
7 TraesCS3B01G359900 chr4D 81.173 324 48 8 1840 2155 7468379 7468061 5.530000e-62 248.0
8 TraesCS3B01G359900 chr1D 80.357 336 59 7 1840 2170 468745653 468745320 5.530000e-62 248.0
9 TraesCS3B01G359900 chr1D 78.188 298 60 4 1854 2146 396886006 396886303 4.400000e-43 185.0
10 TraesCS3B01G359900 chr5B 77.353 340 48 18 1840 2170 588881662 588881343 9.520000e-40 174.0
11 TraesCS3B01G359900 chr6A 78.244 262 48 8 1836 2089 80685142 80684882 2.660000e-35 159.0
12 TraesCS3B01G359900 chr2D 77.903 267 52 6 1894 2156 620608530 620608793 2.660000e-35 159.0
13 TraesCS3B01G359900 chr2D 78.333 180 38 1 1978 2156 205595082 205595261 5.850000e-22 115.0
14 TraesCS3B01G359900 chr6D 80.000 95 16 3 2266 2359 447846449 447846541 1.660000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G359900 chr3B 571808668 571811254 2586 False 4778.0 4778 100.0000 1 2587 1 chr3B.!!$F1 2586
1 TraesCS3B01G359900 chr3D 436039598 436044083 4485 False 1852.0 2913 92.1345 3 2587 2 chr3D.!!$F2 2584
2 TraesCS3B01G359900 chr3D 436162662 436163286 624 False 898.0 898 92.6400 1952 2575 1 chr3D.!!$F1 623
3 TraesCS3B01G359900 chr3A 574863259 574865827 2568 False 1784.5 2167 90.9750 2 2587 2 chr3A.!!$F1 2585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 444 0.108472 CTGTCATCTCGCTCTGGCAA 60.108 55.0 0.0 0.0 38.6 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 3881 0.608035 ACAATGGTCATTCGGCGGTT 60.608 50.0 7.21 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.405953 CCGATCCATAGACACAAACTTACTCT 60.406 42.308 0.00 0.00 0.00 3.24
94 95 4.342378 AGATAGACGTGATGTGTAGGCAAT 59.658 41.667 0.00 0.00 28.69 3.56
96 97 3.674997 AGACGTGATGTGTAGGCAATTT 58.325 40.909 0.00 0.00 0.00 1.82
103 104 6.251163 CGTGATGTGTAGGCAATTTTGTATTG 59.749 38.462 0.00 0.00 0.00 1.90
127 128 1.775039 CTTGGTGCATCCGCCGTATG 61.775 60.000 0.00 0.00 44.81 2.39
218 219 3.438360 CTGCCAAGTTTGTCACTTTGTC 58.562 45.455 0.00 0.00 43.89 3.18
219 220 3.088532 TGCCAAGTTTGTCACTTTGTCT 58.911 40.909 0.00 0.00 43.89 3.41
242 243 2.549064 TATCAAGTGTGCAGTGTGCT 57.451 45.000 0.00 0.00 45.31 4.40
260 261 2.549329 TGCTAAGCCAATGTGCGATATG 59.451 45.455 0.00 0.00 36.02 1.78
308 309 6.142817 CGGGAATAAGCACAGCATATTTAAC 58.857 40.000 1.68 0.00 33.52 2.01
359 360 5.877564 TGTGTTGGGAAAATTGAAAGGAAAC 59.122 36.000 0.00 0.00 0.00 2.78
361 362 5.045578 TGTTGGGAAAATTGAAAGGAAACCA 60.046 36.000 0.00 0.00 0.00 3.67
398 399 0.248289 TGAAGGTGTTACTAGGCGCC 59.752 55.000 21.89 21.89 35.63 6.53
399 400 0.804933 GAAGGTGTTACTAGGCGCCG 60.805 60.000 23.20 10.77 40.00 6.46
400 401 2.847435 AAGGTGTTACTAGGCGCCGC 62.847 60.000 23.20 0.00 40.00 6.53
401 402 3.252484 GTGTTACTAGGCGCCGCG 61.252 66.667 23.20 18.59 0.00 6.46
443 444 0.108472 CTGTCATCTCGCTCTGGCAA 60.108 55.000 0.00 0.00 38.60 4.52
469 470 4.799564 TTGGCTTTAATTACTGCCTTGG 57.200 40.909 21.47 0.00 45.11 3.61
473 474 4.402474 GGCTTTAATTACTGCCTTGGTGAT 59.598 41.667 16.49 0.00 41.92 3.06
481 482 1.307355 TGCCTTGGTGATCATGCACG 61.307 55.000 0.00 0.00 39.66 5.34
489 490 2.164219 GGTGATCATGCACGGAAAACAT 59.836 45.455 0.00 0.00 39.66 2.71
492 493 5.398169 GTGATCATGCACGGAAAACATAAA 58.602 37.500 0.00 0.00 0.00 1.40
511 512 8.671384 ACATAAAAGCAAGTTAGTGTCAGTTA 57.329 30.769 0.00 0.00 0.00 2.24
518 519 6.702282 AGCAAGTTAGTGTCAGTTAAGAGAAC 59.298 38.462 0.00 0.00 0.00 3.01
529 530 9.261180 TGTCAGTTAAGAGAACTACAGATTTTG 57.739 33.333 0.00 0.00 0.00 2.44
533 534 9.930693 AGTTAAGAGAACTACAGATTTTGGTAG 57.069 33.333 0.00 0.00 42.07 3.18
537 538 7.616313 AGAGAACTACAGATTTTGGTAGAAGG 58.384 38.462 5.88 0.00 39.43 3.46
693 2605 1.221414 GATGATGTCAGGGCTAACGC 58.779 55.000 0.00 0.00 0.00 4.84
821 2734 4.220602 AGCTGGGCCATTAAAAACACTAAG 59.779 41.667 6.72 0.00 0.00 2.18
889 2802 6.069673 TCCCTACATATATAAACCCAGCCATG 60.070 42.308 0.00 0.00 0.00 3.66
912 2825 1.374560 TGTCAAACCCACACACGAAG 58.625 50.000 0.00 0.00 0.00 3.79
929 2842 4.625800 GCTACAAGAGCCACCCAG 57.374 61.111 0.00 0.00 46.41 4.45
930 2843 1.746991 GCTACAAGAGCCACCCAGC 60.747 63.158 0.00 0.00 46.41 4.85
931 2844 1.078143 CTACAAGAGCCACCCAGCC 60.078 63.158 0.00 0.00 0.00 4.85
932 2845 1.841302 CTACAAGAGCCACCCAGCCA 61.841 60.000 0.00 0.00 0.00 4.75
945 2858 4.673375 AGCCAGCCAGCCAACCAG 62.673 66.667 0.00 0.00 0.00 4.00
972 2885 2.738521 AGCAACAGCTACCGCACG 60.739 61.111 3.58 0.00 36.70 5.34
995 2915 5.169295 GCATACGTAGGAACTGAAACTTCT 58.831 41.667 12.12 0.00 41.52 2.85
997 2917 6.810182 GCATACGTAGGAACTGAAACTTCTTA 59.190 38.462 12.12 0.00 41.52 2.10
1013 2933 2.477245 TCTTACCATGGCAAGGCTCTA 58.523 47.619 22.17 2.22 0.00 2.43
1132 3079 3.880591 CGATGGCGGCAGATATGG 58.119 61.111 19.29 0.00 0.00 2.74
1133 3080 2.393768 CGATGGCGGCAGATATGGC 61.394 63.158 19.29 3.36 0.00 4.40
1139 3086 2.046892 GGCAGATATGGCGCCGAT 60.047 61.111 23.90 18.11 35.79 4.18
1140 3087 2.393768 GGCAGATATGGCGCCGATG 61.394 63.158 23.90 16.08 35.79 3.84
1141 3088 1.374631 GCAGATATGGCGCCGATGA 60.375 57.895 23.90 3.74 0.00 2.92
1142 3089 0.742281 GCAGATATGGCGCCGATGAT 60.742 55.000 23.90 12.40 0.00 2.45
1143 3090 1.004595 CAGATATGGCGCCGATGATG 58.995 55.000 23.90 14.04 0.00 3.07
1144 3091 0.107993 AGATATGGCGCCGATGATGG 60.108 55.000 23.90 0.00 0.00 3.51
1152 3099 3.417224 CCGATGATGGCGCCGATG 61.417 66.667 23.90 7.95 0.00 3.84
1153 3100 2.356194 CGATGATGGCGCCGATGA 60.356 61.111 23.90 11.20 0.00 2.92
1154 3101 1.739196 CGATGATGGCGCCGATGAT 60.739 57.895 23.90 15.64 0.00 2.45
1155 3102 1.792301 GATGATGGCGCCGATGATG 59.208 57.895 23.90 0.00 0.00 3.07
1156 3103 1.642037 GATGATGGCGCCGATGATGG 61.642 60.000 23.90 0.00 0.00 3.51
1374 3321 2.654912 GGTCGTGTTCGTCGCCAAG 61.655 63.158 0.00 0.00 38.33 3.61
1427 3374 4.803098 ACTGCGGAAGTAAGTGTTAGAT 57.197 40.909 0.00 0.00 37.36 1.98
1441 3388 8.979574 GTAAGTGTTAGATCATATGCAGGTTAC 58.020 37.037 0.00 0.00 0.00 2.50
1447 3394 3.097877 TCATATGCAGGTTACGAGCAG 57.902 47.619 0.00 0.00 42.14 4.24
1456 3403 3.314080 CAGGTTACGAGCAGTTTCCAAAA 59.686 43.478 0.00 0.00 0.00 2.44
1486 3433 9.703892 CCAAACATATGTTGGATCAACTAAAAA 57.296 29.630 22.36 0.00 43.85 1.94
1521 3468 3.131046 GGACAAAGGGAATGCCAATGTAG 59.869 47.826 1.87 0.00 35.15 2.74
1536 3483 7.551585 TGCCAATGTAGGTTTTATTATGGTTG 58.448 34.615 0.00 0.00 0.00 3.77
1575 3522 2.582978 GCTACCCCGTTCCTGGTC 59.417 66.667 0.00 0.00 36.04 4.02
1758 3712 8.276252 AGTATAAAGTTGACGGCAAATGTATT 57.724 30.769 18.63 5.80 35.03 1.89
1814 3768 5.867166 ACGTGTACTTGCGTTTCTTTAAAA 58.133 33.333 0.00 0.00 38.21 1.52
1835 3789 4.483476 AGACAGTTAATTTTGTGGACGC 57.517 40.909 0.00 0.00 0.00 5.19
1923 3881 2.715749 AATTGCATCGAGGTCCATGA 57.284 45.000 0.00 0.00 0.00 3.07
1933 3894 1.451387 GGTCCATGAACCGCCGAAT 60.451 57.895 0.00 0.00 0.00 3.34
1942 3903 0.608035 AACCGCCGAATGACCATTGT 60.608 50.000 0.00 0.00 0.00 2.71
1947 3908 1.305219 CCGAATGACCATTGTGCCGT 61.305 55.000 0.00 0.00 0.00 5.68
2010 3971 4.329545 GCCGGCCTGACCTTGTCA 62.330 66.667 18.11 0.00 40.50 3.58
2022 3983 3.072330 TGACCTTGTCAATAACAGCTGGA 59.928 43.478 19.93 5.78 39.78 3.86
2109 4070 4.826274 TGAATAGACCTGAAGAACCTGG 57.174 45.455 0.00 0.00 0.00 4.45
2163 4124 3.054139 AGAAATGCTAATCTCACTGCCCA 60.054 43.478 0.00 0.00 0.00 5.36
2166 4127 2.121948 TGCTAATCTCACTGCCCAGAT 58.878 47.619 1.69 0.00 0.00 2.90
2217 4178 7.711339 CCACTGTAGAAGTAAATATTGGACTCC 59.289 40.741 4.24 0.00 36.83 3.85
2225 4186 7.902920 AGTAAATATTGGACTCCGGTAAGTA 57.097 36.000 0.00 0.00 0.00 2.24
2297 4258 0.384309 TTAGCTACGTGAGGATGGCG 59.616 55.000 0.00 0.00 0.00 5.69
2346 4308 5.516090 TGTGCTTCAGTTTATTTTTCGACC 58.484 37.500 0.00 0.00 0.00 4.79
2363 4325 1.662122 GACCGAAACTTGTCGTGTGTT 59.338 47.619 0.00 0.00 39.43 3.32
2399 4361 3.159472 TCTTTGCATGACTGGAATTGCT 58.841 40.909 0.00 0.00 36.10 3.91
2429 4392 4.624364 CAGTGCCGGAGTGCCACA 62.624 66.667 5.05 0.00 0.00 4.17
2460 4423 5.867716 ACGTGTGTCACTTATCATTTAGGTC 59.132 40.000 4.27 0.00 31.34 3.85
2577 4540 1.971481 ATATGCTGCAAATGCCTCGA 58.029 45.000 6.36 0.00 41.18 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.769844 AGTTTGTGTCTATGGATCGGACT 59.230 43.478 0.00 0.00 0.00 3.85
28 29 4.703379 ACCCAATCAGCCAAAATTTCAA 57.297 36.364 0.00 0.00 0.00 2.69
75 76 3.334583 AATTGCCTACACATCACGTCT 57.665 42.857 0.00 0.00 0.00 4.18
94 95 3.323115 TGCACCAAGCCATCAATACAAAA 59.677 39.130 0.00 0.00 44.83 2.44
96 97 2.523245 TGCACCAAGCCATCAATACAA 58.477 42.857 0.00 0.00 44.83 2.41
103 104 3.113745 CGGATGCACCAAGCCATC 58.886 61.111 0.00 0.00 44.83 3.51
127 128 0.950555 TGTGAATCTGTGACCGCTGC 60.951 55.000 0.00 0.00 0.00 5.25
131 132 4.952262 ATGATTTGTGAATCTGTGACCG 57.048 40.909 1.41 0.00 41.80 4.79
218 219 4.269603 GCACACTGCACACTTGATATCTAG 59.730 45.833 11.97 11.97 44.26 2.43
219 220 4.183865 GCACACTGCACACTTGATATCTA 58.816 43.478 3.98 0.00 44.26 1.98
242 243 4.213270 GCTTACATATCGCACATTGGCTTA 59.787 41.667 0.00 0.00 0.00 3.09
286 287 9.831737 CTATGTTAAATATGCTGTGCTTATTCC 57.168 33.333 9.89 4.52 37.72 3.01
308 309 7.730364 ACAAGAAAACTTCACTGGTACTATG 57.270 36.000 0.00 0.00 0.00 2.23
359 360 5.828299 TCAGTAAAGTTTTCAGGTGTTGG 57.172 39.130 0.00 0.00 0.00 3.77
361 362 5.949952 ACCTTCAGTAAAGTTTTCAGGTGTT 59.050 36.000 0.00 0.00 31.98 3.32
398 399 2.304516 CTGAACATTTACGGGGCGCG 62.305 60.000 23.00 23.00 0.00 6.86
399 400 1.427819 CTGAACATTTACGGGGCGC 59.572 57.895 0.00 0.00 0.00 6.53
400 401 0.391927 TCCTGAACATTTACGGGGCG 60.392 55.000 0.00 0.00 33.75 6.13
401 402 2.052782 ATCCTGAACATTTACGGGGC 57.947 50.000 0.00 0.00 33.75 5.80
402 403 3.502211 GCATATCCTGAACATTTACGGGG 59.498 47.826 0.00 0.00 33.75 5.73
443 444 4.552355 GGCAGTAATTAAAGCCAAAACGT 58.448 39.130 19.38 0.00 46.26 3.99
457 458 2.954318 GCATGATCACCAAGGCAGTAAT 59.046 45.455 0.00 0.00 31.78 1.89
469 470 2.987413 TGTTTTCCGTGCATGATCAC 57.013 45.000 7.72 0.00 0.00 3.06
473 474 4.233789 GCTTTTATGTTTTCCGTGCATGA 58.766 39.130 7.72 0.00 0.00 3.07
481 482 7.918562 TGACACTAACTTGCTTTTATGTTTTCC 59.081 33.333 0.00 0.00 0.00 3.13
489 490 8.951787 TCTTAACTGACACTAACTTGCTTTTA 57.048 30.769 0.00 0.00 0.00 1.52
492 493 6.817184 TCTCTTAACTGACACTAACTTGCTT 58.183 36.000 0.00 0.00 0.00 3.91
511 512 8.097662 CCTTCTACCAAAATCTGTAGTTCTCTT 58.902 37.037 0.00 0.00 36.63 2.85
518 519 5.491982 AGCACCTTCTACCAAAATCTGTAG 58.508 41.667 0.00 0.00 36.59 2.74
529 530 3.053831 TGCAAGTAAGCACCTTCTACC 57.946 47.619 0.00 0.00 40.11 3.18
570 572 4.743151 CCGCGCTATACATTCTGTTTCTTA 59.257 41.667 5.56 0.00 0.00 2.10
821 2734 3.253230 GTGCTTTGGATTTACACATGGC 58.747 45.455 0.00 0.00 0.00 4.40
889 2802 0.031994 GTGTGTGGGTTTGACATGGC 59.968 55.000 0.00 0.00 0.00 4.40
927 2840 4.980702 TGGTTGGCTGGCTGGCTG 62.981 66.667 18.27 2.91 42.34 4.85
928 2841 4.673375 CTGGTTGGCTGGCTGGCT 62.673 66.667 18.27 0.00 42.34 4.75
929 2842 4.982701 ACTGGTTGGCTGGCTGGC 62.983 66.667 11.09 11.09 42.18 4.85
930 2843 2.674380 GACTGGTTGGCTGGCTGG 60.674 66.667 2.00 0.00 0.00 4.85
931 2844 0.825010 AAAGACTGGTTGGCTGGCTG 60.825 55.000 2.00 0.00 31.76 4.85
932 2845 0.771127 TAAAGACTGGTTGGCTGGCT 59.229 50.000 2.00 0.00 31.76 4.75
937 2850 1.266989 GCTGTGTAAAGACTGGTTGGC 59.733 52.381 0.00 0.00 0.00 4.52
941 2854 3.206150 CTGTTGCTGTGTAAAGACTGGT 58.794 45.455 0.00 0.00 0.00 4.00
972 2885 5.169295 AGAAGTTTCAGTTCCTACGTATGC 58.831 41.667 0.00 0.00 0.00 3.14
981 2901 4.082733 GCCATGGTAAGAAGTTTCAGTTCC 60.083 45.833 14.67 0.00 0.00 3.62
995 2915 2.749466 GCATAGAGCCTTGCCATGGTAA 60.749 50.000 15.02 15.02 37.23 2.85
997 2917 0.466922 GCATAGAGCCTTGCCATGGT 60.467 55.000 14.67 0.00 37.23 3.55
1125 3072 0.107993 CCATCATCGGCGCCATATCT 60.108 55.000 28.98 4.38 0.00 1.98
1126 3073 1.709147 GCCATCATCGGCGCCATATC 61.709 60.000 28.98 3.00 43.52 1.63
1127 3074 1.746615 GCCATCATCGGCGCCATAT 60.747 57.895 28.98 16.71 43.52 1.78
1128 3075 2.358615 GCCATCATCGGCGCCATA 60.359 61.111 28.98 14.85 43.52 2.74
1135 3082 3.417224 CATCGGCGCCATCATCGG 61.417 66.667 28.98 8.23 0.00 4.18
1136 3083 1.739196 ATCATCGGCGCCATCATCG 60.739 57.895 28.98 11.54 0.00 3.84
1137 3084 1.642037 CCATCATCGGCGCCATCATC 61.642 60.000 28.98 0.00 0.00 2.92
1138 3085 1.673337 CCATCATCGGCGCCATCAT 60.673 57.895 28.98 12.24 0.00 2.45
1139 3086 2.281002 CCATCATCGGCGCCATCA 60.281 61.111 28.98 10.08 0.00 3.07
1140 3087 3.730761 GCCATCATCGGCGCCATC 61.731 66.667 28.98 0.00 43.52 3.51
1147 3094 2.359107 CATCGGGGCCATCATCGG 60.359 66.667 4.39 0.00 0.00 4.18
1148 3095 2.359107 CCATCGGGGCCATCATCG 60.359 66.667 4.39 0.00 0.00 3.84
1374 3321 2.859992 CAAGGGCCTCTTGCAGTAC 58.140 57.895 17.56 0.00 45.24 2.73
1427 3374 2.430694 ACTGCTCGTAACCTGCATATGA 59.569 45.455 6.97 0.00 36.07 2.15
1441 3388 3.976169 TGGAAATTTTGGAAACTGCTCG 58.024 40.909 0.00 0.00 0.00 5.03
1447 3394 9.662545 CAACATATGTTTGGAAATTTTGGAAAC 57.337 29.630 18.50 11.09 35.83 2.78
1456 3403 8.137745 AGTTGATCCAACATATGTTTGGAAAT 57.862 30.769 28.18 19.56 45.66 2.17
1486 3433 5.208121 TCCCTTTGTCCAACTTTCAGAAAT 58.792 37.500 0.00 0.00 0.00 2.17
1575 3522 1.931906 ATGCTGCACTACACGATCAG 58.068 50.000 3.57 0.00 0.00 2.90
1814 3768 4.134563 AGCGTCCACAAAATTAACTGTCT 58.865 39.130 0.00 0.00 0.00 3.41
1908 3866 1.154205 CGGTTCATGGACCTCGATGC 61.154 60.000 21.24 0.00 37.56 3.91
1923 3881 0.608035 ACAATGGTCATTCGGCGGTT 60.608 50.000 7.21 0.00 0.00 4.44
1933 3894 1.066303 GTTTTGACGGCACAATGGTCA 59.934 47.619 0.00 0.00 38.80 4.02
1942 3903 2.203084 TGGCTCGTTTTGACGGCA 60.203 55.556 0.00 0.00 33.31 5.69
1947 3908 1.573829 GCATCGGTGGCTCGTTTTGA 61.574 55.000 0.00 0.00 0.00 2.69
1975 3936 1.219664 CTTCGGTATGGGAACGGCA 59.780 57.895 0.00 0.00 0.00 5.69
2010 3971 2.744202 CGCAGACTTTCCAGCTGTTATT 59.256 45.455 13.81 0.00 32.39 1.40
2022 3983 1.156736 GGTACATGCACGCAGACTTT 58.843 50.000 0.00 0.00 0.00 2.66
2109 4070 1.593933 CGCAATGGCAATATTTGGTGC 59.406 47.619 0.00 0.00 41.24 5.01
2146 4107 1.571955 TCTGGGCAGTGAGATTAGCA 58.428 50.000 0.00 0.00 0.00 3.49
2166 4127 9.817809 GGAGTACATATTTGTATTTCTGACTCA 57.182 33.333 12.26 0.00 40.35 3.41
2217 4178 6.003720 CGTATCTTACGTGTGGTACTTACCG 61.004 48.000 0.00 2.26 46.57 4.02
2282 4243 2.225068 AAATCGCCATCCTCACGTAG 57.775 50.000 0.00 0.00 0.00 3.51
2287 4248 2.917933 CCAACTAAATCGCCATCCTCA 58.082 47.619 0.00 0.00 0.00 3.86
2297 4258 2.094078 TGCCATGCTTGCCAACTAAATC 60.094 45.455 0.00 0.00 0.00 2.17
2346 4308 3.548668 TCAGTAACACACGACAAGTTTCG 59.451 43.478 0.00 6.08 44.87 3.46
2363 4325 7.884257 TCATGCAAAGATGACAAATTTCAGTA 58.116 30.769 0.00 0.00 0.00 2.74
2399 4361 3.319689 TCCGGCACTGACATTATTCGATA 59.680 43.478 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.