Multiple sequence alignment - TraesCS3B01G359800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G359800 chr3B 100.000 6029 0 0 1 6029 571796145 571802173 0.000000e+00 11134
1 TraesCS3B01G359800 chr3D 88.658 1781 137 42 3253 4995 435705549 435707302 0.000000e+00 2109
2 TraesCS3B01G359800 chr3D 88.954 1367 86 33 24 1373 435701576 435702894 0.000000e+00 1628
3 TraesCS3B01G359800 chr3D 89.599 548 42 10 2264 2800 435703946 435704489 0.000000e+00 682
4 TraesCS3B01G359800 chr3D 87.017 362 29 9 1422 1775 435702905 435703256 5.660000e-105 392
5 TraesCS3B01G359800 chr3D 86.617 269 29 6 1837 2100 435703548 435703814 2.130000e-74 291
6 TraesCS3B01G359800 chr3D 84.956 226 28 6 3000 3222 435704932 435705154 2.190000e-54 224
7 TraesCS3B01G359800 chr3D 92.913 127 9 0 2869 2995 435704767 435704893 1.030000e-42 185
8 TraesCS3B01G359800 chr3A 87.327 1444 140 30 3575 4995 574516712 574518135 0.000000e+00 1613
9 TraesCS3B01G359800 chr3A 90.979 1042 81 6 4993 6029 55083122 55084155 0.000000e+00 1391
10 TraesCS3B01G359800 chr3A 85.028 1082 75 45 740 1790 574513597 574514622 0.000000e+00 1020
11 TraesCS3B01G359800 chr3A 90.377 530 36 7 2272 2795 574515249 574515769 0.000000e+00 682
12 TraesCS3B01G359800 chr3A 89.758 537 41 8 1 529 574513078 574513608 0.000000e+00 675
13 TraesCS3B01G359800 chr3A 84.038 520 63 14 3075 3574 574516160 574516679 3.270000e-132 483
14 TraesCS3B01G359800 chr3A 88.235 289 21 8 1853 2130 574514727 574515013 3.480000e-87 333
15 TraesCS3B01G359800 chr3A 91.200 125 11 0 2869 2993 574515906 574516030 2.890000e-38 171
16 TraesCS3B01G359800 chr2D 90.481 1040 92 4 4993 6028 101520605 101519569 0.000000e+00 1365
17 TraesCS3B01G359800 chr2D 88.377 1041 113 6 4993 6029 187119395 187118359 0.000000e+00 1245
18 TraesCS3B01G359800 chr2D 90.387 905 83 4 5126 6029 431985514 431986415 0.000000e+00 1186
19 TraesCS3B01G359800 chr2D 84.726 1041 146 11 4993 6026 412846604 412847638 0.000000e+00 1029
20 TraesCS3B01G359800 chr2D 93.407 91 4 2 2184 2273 592140687 592140598 3.790000e-27 134
21 TraesCS3B01G359800 chr2D 90.291 103 5 5 2183 2282 503441219 503441319 4.900000e-26 130
22 TraesCS3B01G359800 chr7A 88.665 1041 107 6 4993 6029 137011463 137010430 0.000000e+00 1258
23 TraesCS3B01G359800 chr4A 88.506 1044 112 6 4993 6029 620739936 620740978 0.000000e+00 1256
24 TraesCS3B01G359800 chr6B 85.121 1035 146 7 5001 6029 16593479 16592447 0.000000e+00 1051
25 TraesCS3B01G359800 chr6B 92.857 98 5 2 2187 2283 229724578 229724674 2.270000e-29 141
26 TraesCS3B01G359800 chr6D 83.573 1041 167 2 4993 6029 389997184 389998224 0.000000e+00 972
27 TraesCS3B01G359800 chr4D 92.784 97 4 3 2188 2282 16403537 16403442 2.930000e-28 137
28 TraesCS3B01G359800 chr7B 93.407 91 5 1 2184 2273 432933235 432933325 3.790000e-27 134
29 TraesCS3B01G359800 chr5B 94.318 88 4 1 2188 2274 631894520 631894607 3.790000e-27 134
30 TraesCS3B01G359800 chr4B 93.407 91 5 1 2188 2277 643626703 643626613 3.790000e-27 134
31 TraesCS3B01G359800 chr1D 93.407 91 5 1 2188 2277 484390930 484391020 3.790000e-27 134
32 TraesCS3B01G359800 chr1B 92.391 92 7 0 2181 2272 156585811 156585902 1.360000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G359800 chr3B 571796145 571802173 6028 False 11134.000000 11134 100.000000 1 6029 1 chr3B.!!$F1 6028
1 TraesCS3B01G359800 chr3D 435701576 435707302 5726 False 787.285714 2109 88.387714 24 4995 7 chr3D.!!$F1 4971
2 TraesCS3B01G359800 chr3A 55083122 55084155 1033 False 1391.000000 1391 90.979000 4993 6029 1 chr3A.!!$F1 1036
3 TraesCS3B01G359800 chr3A 574513078 574518135 5057 False 711.000000 1613 87.994714 1 4995 7 chr3A.!!$F2 4994
4 TraesCS3B01G359800 chr2D 101519569 101520605 1036 True 1365.000000 1365 90.481000 4993 6028 1 chr2D.!!$R1 1035
5 TraesCS3B01G359800 chr2D 187118359 187119395 1036 True 1245.000000 1245 88.377000 4993 6029 1 chr2D.!!$R2 1036
6 TraesCS3B01G359800 chr2D 431985514 431986415 901 False 1186.000000 1186 90.387000 5126 6029 1 chr2D.!!$F2 903
7 TraesCS3B01G359800 chr2D 412846604 412847638 1034 False 1029.000000 1029 84.726000 4993 6026 1 chr2D.!!$F1 1033
8 TraesCS3B01G359800 chr7A 137010430 137011463 1033 True 1258.000000 1258 88.665000 4993 6029 1 chr7A.!!$R1 1036
9 TraesCS3B01G359800 chr4A 620739936 620740978 1042 False 1256.000000 1256 88.506000 4993 6029 1 chr4A.!!$F1 1036
10 TraesCS3B01G359800 chr6B 16592447 16593479 1032 True 1051.000000 1051 85.121000 5001 6029 1 chr6B.!!$R1 1028
11 TraesCS3B01G359800 chr6D 389997184 389998224 1040 False 972.000000 972 83.573000 4993 6029 1 chr6D.!!$F1 1036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 395 0.034059 AGCGGGACAGTTGACAAGAG 59.966 55.0 0.00 0.00 0.00 2.85 F
1094 1144 0.034337 GGCGTGTTGGTGTCCTTCTA 59.966 55.0 0.00 0.00 0.00 2.10 F
1798 2058 0.036765 GGTTGCCACAGGATCGTACA 60.037 55.0 0.00 0.00 0.00 2.90 F
2866 3502 0.028770 TGTTCTGCGCAGGTTTTTCG 59.971 50.0 35.36 10.25 0.00 3.46 F
3131 3815 0.038310 CCAAGTTCAGAACCCCTCCC 59.962 60.0 9.85 0.00 0.00 4.30 F
4035 5152 0.107410 TTGTTGACGTCCCTGCAACT 60.107 50.0 14.12 0.00 41.71 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1848 0.036765 TGTACGATCCTGTGGCAACC 60.037 55.0 0.00 0.00 0.00 3.77 R
2244 2657 0.042361 CCGTTCCGATCTACTCGTCG 60.042 60.0 0.00 0.00 46.18 5.12 R
3112 3796 0.038310 GGGAGGGGTTCTGAACTTGG 59.962 60.0 19.05 0.00 0.00 3.61 R
4563 5686 0.031178 GCGGCTGAATATTTGGGCAG 59.969 55.0 0.00 6.71 0.00 4.85 R
4564 5687 0.682532 TGCGGCTGAATATTTGGGCA 60.683 50.0 0.00 6.35 0.00 5.36 R
5347 6482 0.188342 TGCTTCAAGCCTTTTCCCCT 59.812 50.0 7.01 0.00 41.51 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.151172 TGCAGTGCATACATACGGCG 61.151 55.000 15.37 4.80 40.19 6.46
42 43 1.948104 CTGGTTCGTCCTGTCACAAA 58.052 50.000 1.80 0.00 37.07 2.83
54 55 6.036735 CGTCCTGTCACAAACTCTTTTAAAGA 59.963 38.462 7.22 7.22 35.87 2.52
96 97 7.425606 AGAAACTGTGCTGTAATGTAAAAAGG 58.574 34.615 0.00 0.00 0.00 3.11
114 115 9.358872 GTAAAAAGGCCTTCTATTCAAAAGATG 57.641 33.333 20.79 0.00 0.00 2.90
117 118 9.479549 AAAAGGCCTTCTATTCAAAAGATGATA 57.520 29.630 20.79 0.00 38.03 2.15
122 123 7.811713 GCCTTCTATTCAAAAGATGATATTGCC 59.188 37.037 0.00 0.00 38.03 4.52
157 163 8.355913 GGAACTGATTTCTGTGAAAAAGAAGAT 58.644 33.333 10.82 0.00 42.14 2.40
171 177 9.558396 TGAAAAAGAAGATAATGTTTTGCCATT 57.442 25.926 0.00 0.00 38.54 3.16
202 215 0.248012 TGATTGCCATTGCCTTGCTG 59.752 50.000 0.00 0.00 36.33 4.41
216 232 6.358118 TGCCTTGCTGTAGTATTTAATTCG 57.642 37.500 0.00 0.00 0.00 3.34
223 239 5.728351 TGTAGTATTTAATTCGCCTGCAC 57.272 39.130 0.00 0.00 0.00 4.57
284 300 7.451255 TCTGAACCATTTGAATGTTTACCTCAT 59.549 33.333 3.30 0.00 34.60 2.90
285 301 8.642935 TGAACCATTTGAATGTTTACCTCATA 57.357 30.769 3.30 0.00 34.60 2.15
286 302 8.519526 TGAACCATTTGAATGTTTACCTCATAC 58.480 33.333 3.30 0.00 34.60 2.39
378 395 0.034059 AGCGGGACAGTTGACAAGAG 59.966 55.000 0.00 0.00 0.00 2.85
394 411 0.244178 AGAGCCGACGGAAGACTTTC 59.756 55.000 20.50 0.00 0.00 2.62
430 447 8.110860 ACACTTTTAATCTTGATGTTACCAGG 57.889 34.615 0.00 0.00 0.00 4.45
431 448 7.724061 ACACTTTTAATCTTGATGTTACCAGGT 59.276 33.333 0.00 0.00 0.00 4.00
470 490 7.202001 CCAACATCACCAGAAGGATATACTGTA 60.202 40.741 0.00 0.00 38.69 2.74
472 492 6.267928 ACATCACCAGAAGGATATACTGTACC 59.732 42.308 0.00 0.00 38.69 3.34
516 539 1.102978 ATCAGGGCAATTTGTACCGC 58.897 50.000 0.00 0.00 0.00 5.68
630 653 2.021722 CCATAACGGTGGCCATTCG 58.978 57.895 23.84 23.84 31.43 3.34
802 837 1.824045 GCTATAGCTTCCTCCTCCCGT 60.824 57.143 17.75 0.00 38.21 5.28
878 916 0.613260 TTCATTCTCGTCCCCACAGG 59.387 55.000 0.00 0.00 0.00 4.00
879 917 1.450312 CATTCTCGTCCCCACAGGC 60.450 63.158 0.00 0.00 34.51 4.85
881 919 4.631740 TCTCGTCCCCACAGGCCA 62.632 66.667 5.01 0.00 34.51 5.36
884 922 4.704833 CGTCCCCACAGGCCACAG 62.705 72.222 5.01 0.00 34.51 3.66
885 923 3.570212 GTCCCCACAGGCCACAGT 61.570 66.667 5.01 0.00 34.51 3.55
957 996 1.942712 CGCCATAGTACGTCGCCAC 60.943 63.158 0.00 0.00 0.00 5.01
971 1010 1.502163 CGCCACTATAAGCTGCAGGC 61.502 60.000 17.12 6.81 42.19 4.85
987 1026 2.383527 GGCTTCTTCGTCCGTGCAG 61.384 63.158 0.00 0.00 0.00 4.41
1051 1101 4.055227 GGGGGCGGTTCCATTCCA 62.055 66.667 0.00 0.00 36.21 3.53
1055 1105 2.361104 GCGGTTCCATTCCAGGCA 60.361 61.111 0.00 0.00 0.00 4.75
1086 1136 3.353836 CTTCCCGGCGTGTTGGTG 61.354 66.667 6.01 0.00 0.00 4.17
1091 1141 2.590575 CGGCGTGTTGGTGTCCTT 60.591 61.111 0.00 0.00 0.00 3.36
1094 1144 0.034337 GGCGTGTTGGTGTCCTTCTA 59.966 55.000 0.00 0.00 0.00 2.10
1103 1153 2.972713 TGGTGTCCTTCTAGTGCTTCTT 59.027 45.455 0.00 0.00 0.00 2.52
1106 1156 2.972713 TGTCCTTCTAGTGCTTCTTGGT 59.027 45.455 0.00 0.00 0.00 3.67
1115 1165 2.394563 GCTTCTTGGTCTCTGCGCC 61.395 63.158 4.18 0.00 0.00 6.53
1255 1314 1.299541 CCGTACCTGTCCATCAATGC 58.700 55.000 0.00 0.00 0.00 3.56
1375 1434 3.257624 CCTTCAAACTCCAGGTACGTACT 59.742 47.826 24.07 8.57 0.00 2.73
1376 1435 4.460382 CCTTCAAACTCCAGGTACGTACTA 59.540 45.833 24.07 7.83 0.00 1.82
1380 1439 3.710209 ACTCCAGGTACGTACTACTGT 57.290 47.619 24.07 13.88 0.00 3.55
1387 1446 5.182001 CCAGGTACGTACTACTGTACAACTT 59.818 44.000 24.07 0.00 46.88 2.66
1390 1449 8.289618 CAGGTACGTACTACTGTACAACTTTAA 58.710 37.037 24.07 0.00 46.88 1.52
1392 1451 8.902735 GGTACGTACTACTGTACAACTTTAAAC 58.097 37.037 24.07 0.00 46.88 2.01
1395 1454 9.364989 ACGTACTACTGTACAACTTTAAACAAA 57.635 29.630 0.00 0.00 46.88 2.83
1420 1479 6.681777 AGATTAACATTCACCTGCTGTTTTC 58.318 36.000 0.00 0.00 35.00 2.29
1425 1484 4.276926 ACATTCACCTGCTGTTTTCTTCTC 59.723 41.667 0.00 0.00 0.00 2.87
1434 1493 6.238374 CCTGCTGTTTTCTTCTCGAAACTTAA 60.238 38.462 0.00 0.00 41.13 1.85
1436 1495 7.531716 TGCTGTTTTCTTCTCGAAACTTAAAA 58.468 30.769 0.00 0.00 41.13 1.52
1527 1595 2.031769 CAGGACGTACGTAGTGTTCACA 60.032 50.000 22.87 0.00 45.73 3.58
1529 1597 2.721090 GGACGTACGTAGTGTTCACAAC 59.279 50.000 22.87 3.74 45.73 3.32
1530 1598 3.362295 GACGTACGTAGTGTTCACAACA 58.638 45.455 22.87 0.00 45.73 3.33
1532 1600 2.722629 CGTACGTAGTGTTCACAACAGG 59.277 50.000 7.22 0.00 45.73 4.00
1536 1604 4.757594 ACGTAGTGTTCACAACAGGTTTA 58.242 39.130 5.74 0.00 43.10 2.01
1538 1606 4.807304 CGTAGTGTTCACAACAGGTTTACT 59.193 41.667 5.74 0.00 43.10 2.24
1542 1610 6.386654 AGTGTTCACAACAGGTTTACTTTTG 58.613 36.000 5.74 0.00 43.10 2.44
1543 1611 5.061684 GTGTTCACAACAGGTTTACTTTTGC 59.938 40.000 0.00 0.00 43.10 3.68
1544 1612 4.379339 TCACAACAGGTTTACTTTTGCC 57.621 40.909 0.00 0.00 39.86 4.52
1546 1614 4.097286 TCACAACAGGTTTACTTTTGCCTC 59.903 41.667 0.00 0.00 39.86 4.70
1547 1615 4.097892 CACAACAGGTTTACTTTTGCCTCT 59.902 41.667 0.00 0.00 39.86 3.69
1548 1616 4.338400 ACAACAGGTTTACTTTTGCCTCTC 59.662 41.667 0.00 0.00 39.86 3.20
1550 1618 3.181458 ACAGGTTTACTTTTGCCTCTCGA 60.181 43.478 0.00 0.00 0.00 4.04
1551 1619 4.003648 CAGGTTTACTTTTGCCTCTCGAT 58.996 43.478 0.00 0.00 0.00 3.59
1552 1620 4.003648 AGGTTTACTTTTGCCTCTCGATG 58.996 43.478 0.00 0.00 0.00 3.84
1553 1621 3.127030 GGTTTACTTTTGCCTCTCGATGG 59.873 47.826 0.71 0.71 0.00 3.51
1554 1622 3.973206 TTACTTTTGCCTCTCGATGGA 57.027 42.857 8.57 0.00 0.00 3.41
1555 1623 2.100605 ACTTTTGCCTCTCGATGGAC 57.899 50.000 8.57 1.69 0.00 4.02
1556 1624 1.347707 ACTTTTGCCTCTCGATGGACA 59.652 47.619 8.57 3.92 0.00 4.02
1597 1665 1.197492 ACAATAGTGTGTGTGCATGCG 59.803 47.619 14.09 0.00 36.31 4.73
1599 1667 0.321564 ATAGTGTGTGTGCATGCGGT 60.322 50.000 14.09 0.00 0.00 5.68
1693 1761 0.685097 TTCTGTGCCACTACCCTGTC 59.315 55.000 0.00 0.00 0.00 3.51
1702 1770 0.977395 ACTACCCTGTCAAGGTGAGC 59.023 55.000 3.15 0.00 42.74 4.26
1703 1771 0.250513 CTACCCTGTCAAGGTGAGCC 59.749 60.000 3.15 0.00 42.74 4.70
1720 1788 1.229428 GCCTTTTGCTTTGCCTTTCC 58.771 50.000 0.00 0.00 36.87 3.13
1775 1844 3.551046 CGCTTCGCCACAGTAGAATCTAT 60.551 47.826 0.00 0.00 0.00 1.98
1776 1845 3.984633 GCTTCGCCACAGTAGAATCTATC 59.015 47.826 0.00 0.00 0.00 2.08
1778 1847 5.048643 GCTTCGCCACAGTAGAATCTATCTA 60.049 44.000 0.00 0.00 39.71 1.98
1779 1848 6.561737 TTCGCCACAGTAGAATCTATCTAG 57.438 41.667 0.00 0.00 41.31 2.43
1790 2050 4.346418 AGAATCTATCTAGGTTGCCACAGG 59.654 45.833 0.00 0.00 36.32 4.00
1792 2052 3.928754 TCTATCTAGGTTGCCACAGGAT 58.071 45.455 0.00 0.00 0.00 3.24
1795 2055 0.537188 CTAGGTTGCCACAGGATCGT 59.463 55.000 0.00 0.00 0.00 3.73
1796 2056 1.754803 CTAGGTTGCCACAGGATCGTA 59.245 52.381 0.00 0.00 0.00 3.43
1798 2058 0.036765 GGTTGCCACAGGATCGTACA 60.037 55.000 0.00 0.00 0.00 2.90
1799 2059 1.406887 GGTTGCCACAGGATCGTACAT 60.407 52.381 0.00 0.00 0.00 2.29
1800 2060 1.665679 GTTGCCACAGGATCGTACATG 59.334 52.381 0.00 0.00 0.00 3.21
1802 2062 0.179073 GCCACAGGATCGTACATGCT 60.179 55.000 0.00 0.00 0.00 3.79
1803 2063 1.068588 GCCACAGGATCGTACATGCTA 59.931 52.381 0.00 0.00 0.00 3.49
1804 2064 2.289072 GCCACAGGATCGTACATGCTAT 60.289 50.000 0.00 0.00 0.00 2.97
1805 2065 3.579709 CCACAGGATCGTACATGCTATC 58.420 50.000 0.00 0.00 0.00 2.08
1806 2066 3.005791 CCACAGGATCGTACATGCTATCA 59.994 47.826 0.00 0.00 0.00 2.15
1807 2067 4.322273 CCACAGGATCGTACATGCTATCAT 60.322 45.833 0.00 0.00 0.00 2.45
1822 2105 4.819088 TGCTATCATATGTTTTAGCGGCAA 59.181 37.500 20.02 8.44 39.90 4.52
1831 2114 1.164411 TTTAGCGGCAACCATCAGTG 58.836 50.000 1.45 0.00 0.00 3.66
1833 2116 2.184020 TAGCGGCAACCATCAGTGCT 62.184 55.000 1.45 0.00 35.12 4.40
1834 2117 3.044059 GCGGCAACCATCAGTGCTC 62.044 63.158 0.00 0.00 0.00 4.26
1835 2118 2.743752 CGGCAACCATCAGTGCTCG 61.744 63.158 0.00 0.00 0.00 5.03
1836 2119 1.375908 GGCAACCATCAGTGCTCGA 60.376 57.895 0.00 0.00 0.00 4.04
1837 2120 0.745845 GGCAACCATCAGTGCTCGAT 60.746 55.000 0.00 0.00 0.00 3.59
1838 2121 1.473257 GGCAACCATCAGTGCTCGATA 60.473 52.381 0.00 0.00 0.00 2.92
1839 2122 2.487934 GCAACCATCAGTGCTCGATAT 58.512 47.619 0.00 0.00 0.00 1.63
1840 2123 2.222678 GCAACCATCAGTGCTCGATATG 59.777 50.000 0.00 0.00 0.00 1.78
1841 2124 3.461061 CAACCATCAGTGCTCGATATGT 58.539 45.455 0.00 0.00 0.00 2.29
1842 2125 4.620982 CAACCATCAGTGCTCGATATGTA 58.379 43.478 0.00 0.00 0.00 2.29
1849 2132 2.509052 TGCTCGATATGTAGCACCAC 57.491 50.000 4.79 0.00 43.56 4.16
1850 2133 1.269051 TGCTCGATATGTAGCACCACG 60.269 52.381 4.79 0.00 43.56 4.94
1856 2158 1.748950 TATGTAGCACCACGTACGGA 58.251 50.000 21.06 0.00 0.00 4.69
1857 2159 0.454600 ATGTAGCACCACGTACGGAG 59.545 55.000 21.06 12.62 0.00 4.63
1879 2181 0.249322 CCGTCACGTGAACAACTCCT 60.249 55.000 21.95 0.00 0.00 3.69
1880 2182 0.852777 CGTCACGTGAACAACTCCTG 59.147 55.000 21.95 0.00 0.00 3.86
1882 2184 2.542205 CGTCACGTGAACAACTCCTGTA 60.542 50.000 21.95 0.00 37.23 2.74
1884 2186 2.427812 TCACGTGAACAACTCCTGTACA 59.572 45.455 17.62 0.00 37.23 2.90
1885 2187 3.069016 TCACGTGAACAACTCCTGTACAT 59.931 43.478 17.62 0.00 37.23 2.29
1886 2188 3.184379 CACGTGAACAACTCCTGTACATG 59.816 47.826 10.90 0.00 37.23 3.21
1906 2214 1.135721 GCACCATTGCTCAGATTTCCC 59.864 52.381 0.00 0.00 46.17 3.97
1907 2215 1.402968 CACCATTGCTCAGATTTCCCG 59.597 52.381 0.00 0.00 0.00 5.14
1911 2219 0.038166 TTGCTCAGATTTCCCGCCTT 59.962 50.000 0.00 0.00 0.00 4.35
1927 2235 4.258543 CCGCCTTCATTAAGAGGTTGTTA 58.741 43.478 4.75 0.00 34.37 2.41
1935 2243 9.755064 CTTCATTAAGAGGTTGTTATGTTTACG 57.245 33.333 0.00 0.00 34.37 3.18
1937 2245 7.334921 TCATTAAGAGGTTGTTATGTTTACGGG 59.665 37.037 0.00 0.00 0.00 5.28
1960 2268 4.137116 AGGCAGTGCTATGATTCGTTAA 57.863 40.909 16.11 0.00 0.00 2.01
1976 2284 2.344025 GTTAACCGGTCCAGTCATGTC 58.656 52.381 8.04 0.00 0.00 3.06
2102 2415 1.210967 TGCATGGATCAGAGCATGACA 59.789 47.619 12.28 7.77 41.91 3.58
2116 2429 3.760684 AGCATGACATGAACCTCCTTTTC 59.239 43.478 19.76 0.00 0.00 2.29
2138 2549 6.611380 TCGAAAGAAAATAAATTCAAGCGC 57.389 33.333 0.00 0.00 37.03 5.92
2143 2554 8.755696 AAAGAAAATAAATTCAAGCGCATGTA 57.244 26.923 11.47 1.07 0.00 2.29
2149 2560 2.124570 CAAGCGCATGTAGGCCCT 60.125 61.111 11.47 0.00 0.00 5.19
2162 2575 6.209391 GCATGTAGGCCCTATTAATTGTCAAT 59.791 38.462 0.00 0.00 0.00 2.57
2182 2595 2.265739 CTGCTTAGCGGGCTGTGA 59.734 61.111 4.90 0.00 0.00 3.58
2189 2602 3.839293 CTTAGCGGGCTGTGATAGATAC 58.161 50.000 2.86 0.00 0.00 2.24
2191 2604 1.889829 AGCGGGCTGTGATAGATACTC 59.110 52.381 0.00 0.00 0.00 2.59
2192 2605 1.067495 GCGGGCTGTGATAGATACTCC 60.067 57.143 0.00 0.00 0.00 3.85
2193 2606 2.520069 CGGGCTGTGATAGATACTCCT 58.480 52.381 0.00 0.00 0.00 3.69
2195 2608 3.057174 CGGGCTGTGATAGATACTCCTTC 60.057 52.174 0.00 0.00 0.00 3.46
2196 2609 4.156477 GGGCTGTGATAGATACTCCTTCT 58.844 47.826 0.00 0.00 0.00 2.85
2197 2610 4.021544 GGGCTGTGATAGATACTCCTTCTG 60.022 50.000 0.00 0.00 0.00 3.02
2199 2612 5.069781 GGCTGTGATAGATACTCCTTCTGTT 59.930 44.000 0.00 0.00 0.00 3.16
2201 2614 6.716934 TGTGATAGATACTCCTTCTGTTCC 57.283 41.667 0.00 0.00 0.00 3.62
2202 2615 5.299531 TGTGATAGATACTCCTTCTGTTCCG 59.700 44.000 0.00 0.00 0.00 4.30
2204 2617 6.207810 GTGATAGATACTCCTTCTGTTCCGAT 59.792 42.308 0.00 0.00 0.00 4.18
2206 2619 5.941555 AGATACTCCTTCTGTTCCGATTT 57.058 39.130 0.00 0.00 0.00 2.17
2208 2621 6.807789 AGATACTCCTTCTGTTCCGATTTAC 58.192 40.000 0.00 0.00 0.00 2.01
2209 2622 6.608002 AGATACTCCTTCTGTTCCGATTTACT 59.392 38.462 0.00 0.00 0.00 2.24
2210 2623 5.074584 ACTCCTTCTGTTCCGATTTACTC 57.925 43.478 0.00 0.00 0.00 2.59
2212 2625 3.508793 TCCTTCTGTTCCGATTTACTCGT 59.491 43.478 0.00 0.00 46.18 4.18
2213 2626 3.858238 CCTTCTGTTCCGATTTACTCGTC 59.142 47.826 0.00 0.00 46.18 4.20
2214 2627 3.127081 TCTGTTCCGATTTACTCGTCG 57.873 47.619 0.00 0.00 46.18 5.12
2216 2629 2.587956 TGTTCCGATTTACTCGTCGTG 58.412 47.619 0.00 0.00 46.18 4.35
2217 2630 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
2218 2631 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
2219 2632 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
2223 2636 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
2224 2637 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
2230 2643 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2231 2644 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2232 2645 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2235 2648 7.639461 TCGTCGTGGTTTTAGTTCAAATTTAAC 59.361 33.333 0.00 0.00 0.00 2.01
2247 2660 8.845942 AGTTCAAATTTAACTAAAACCACGAC 57.154 30.769 9.77 0.00 35.44 4.34
2248 2661 7.641020 AGTTCAAATTTAACTAAAACCACGACG 59.359 33.333 9.77 0.00 35.44 5.12
2249 2662 7.244166 TCAAATTTAACTAAAACCACGACGA 57.756 32.000 0.00 0.00 0.00 4.20
2250 2663 7.346695 TCAAATTTAACTAAAACCACGACGAG 58.653 34.615 0.00 0.00 0.00 4.18
2251 2664 6.849588 AATTTAACTAAAACCACGACGAGT 57.150 33.333 0.00 0.00 0.00 4.18
2252 2665 7.945033 AATTTAACTAAAACCACGACGAGTA 57.055 32.000 0.00 0.00 0.00 2.59
2254 2667 4.836125 AACTAAAACCACGACGAGTAGA 57.164 40.909 0.00 0.00 0.00 2.59
2256 2669 4.979388 ACTAAAACCACGACGAGTAGATC 58.021 43.478 0.00 0.00 0.00 2.75
2345 2758 3.589654 CTCGGGTGCAAGAAGGCGA 62.590 63.158 0.00 0.00 36.28 5.54
2479 2892 4.680237 TTCCAGACGCCGTGCCTG 62.680 66.667 0.00 0.00 0.00 4.85
2584 3001 3.984292 GGTACGAACGTGATCGAGT 57.016 52.632 16.02 0.00 45.48 4.18
2598 3017 3.755628 GAGTGCCCACCGACGCTA 61.756 66.667 0.00 0.00 0.00 4.26
2601 3020 2.992689 TGCCCACCGACGCTAAGA 60.993 61.111 0.00 0.00 0.00 2.10
2602 3021 2.202756 GCCCACCGACGCTAAGAG 60.203 66.667 0.00 0.00 0.00 2.85
2603 3022 2.202756 CCCACCGACGCTAAGAGC 60.203 66.667 0.00 0.00 38.02 4.09
2604 3023 2.571757 CCACCGACGCTAAGAGCA 59.428 61.111 0.00 0.00 42.58 4.26
2605 3024 1.517257 CCACCGACGCTAAGAGCAG 60.517 63.158 0.00 0.00 42.58 4.24
2607 3026 0.798771 CACCGACGCTAAGAGCAGAC 60.799 60.000 0.00 0.00 42.58 3.51
2608 3027 1.583967 CCGACGCTAAGAGCAGACG 60.584 63.158 0.00 4.27 42.58 4.18
2610 3029 1.801332 GACGCTAAGAGCAGACGGA 59.199 57.895 0.00 0.00 42.58 4.69
2611 3030 0.248296 GACGCTAAGAGCAGACGGAG 60.248 60.000 0.00 0.00 42.58 4.63
2612 3031 0.677098 ACGCTAAGAGCAGACGGAGA 60.677 55.000 0.00 0.00 42.58 3.71
2614 3033 0.248866 GCTAAGAGCAGACGGAGAGC 60.249 60.000 0.00 0.00 41.89 4.09
2615 3034 1.098869 CTAAGAGCAGACGGAGAGCA 58.901 55.000 0.00 0.00 0.00 4.26
2616 3035 1.680735 CTAAGAGCAGACGGAGAGCAT 59.319 52.381 0.00 0.00 0.00 3.79
2617 3036 0.459489 AAGAGCAGACGGAGAGCATC 59.541 55.000 0.00 0.00 0.00 3.91
2636 3055 7.827819 AGCATCTTGATTGTGATTTTTCATG 57.172 32.000 0.00 0.00 0.00 3.07
2656 3079 1.855513 CATGGTGCTGGTTTGTGTTG 58.144 50.000 0.00 0.00 0.00 3.33
2657 3080 1.136695 CATGGTGCTGGTTTGTGTTGT 59.863 47.619 0.00 0.00 0.00 3.32
2665 3088 3.304257 GCTGGTTTGTGTTGTCAGATGAG 60.304 47.826 0.00 0.00 0.00 2.90
2714 3137 2.730672 GCAGCAGGTTCAGTACGCG 61.731 63.158 3.53 3.53 0.00 6.01
2753 3176 2.586635 GTGGCCACGACGTTCACA 60.587 61.111 22.49 6.20 0.00 3.58
2787 3210 1.354040 CAGTGAGTGGTCGAATGCTC 58.646 55.000 0.00 0.00 0.00 4.26
2788 3211 0.247736 AGTGAGTGGTCGAATGCTCC 59.752 55.000 8.32 0.00 0.00 4.70
2796 3219 1.008424 TCGAATGCTCCTCGATCGC 60.008 57.895 11.09 0.00 40.25 4.58
2800 3223 2.960957 AATGCTCCTCGATCGCACCG 62.961 60.000 11.09 0.00 36.37 4.94
2805 3228 2.352915 CTCGATCGCACCGAGCTC 60.353 66.667 11.09 2.73 45.37 4.09
2807 3230 2.653448 CGATCGCACCGAGCTCAG 60.653 66.667 15.40 4.66 40.26 3.35
2809 3232 1.299014 GATCGCACCGAGCTCAGAG 60.299 63.158 15.40 1.75 39.28 3.35
2810 3233 1.999071 GATCGCACCGAGCTCAGAGT 61.999 60.000 15.40 4.80 39.28 3.24
2811 3234 0.748367 ATCGCACCGAGCTCAGAGTA 60.748 55.000 15.40 0.00 39.91 2.59
2815 3238 2.030717 CGCACCGAGCTCAGAGTATATT 60.031 50.000 15.40 0.00 42.61 1.28
2816 3239 3.312828 GCACCGAGCTCAGAGTATATTG 58.687 50.000 15.40 0.00 41.15 1.90
2817 3240 3.858877 GCACCGAGCTCAGAGTATATTGG 60.859 52.174 15.40 4.98 41.15 3.16
2818 3241 3.570125 CACCGAGCTCAGAGTATATTGGA 59.430 47.826 15.40 0.00 0.00 3.53
2819 3242 3.823873 ACCGAGCTCAGAGTATATTGGAG 59.176 47.826 15.40 0.00 0.00 3.86
2820 3243 3.823873 CCGAGCTCAGAGTATATTGGAGT 59.176 47.826 15.40 0.00 0.00 3.85
2821 3244 5.004448 CCGAGCTCAGAGTATATTGGAGTA 58.996 45.833 15.40 0.00 0.00 2.59
2825 3248 7.064134 CGAGCTCAGAGTATATTGGAGTAGTAG 59.936 44.444 15.40 0.00 0.00 2.57
2827 3250 8.441572 AGCTCAGAGTATATTGGAGTAGTAGAA 58.558 37.037 0.00 0.00 0.00 2.10
2828 3251 8.508875 GCTCAGAGTATATTGGAGTAGTAGAAC 58.491 40.741 0.00 0.00 0.00 3.01
2830 3253 9.916360 TCAGAGTATATTGGAGTAGTAGAACAA 57.084 33.333 0.00 0.00 0.00 2.83
2848 3271 9.341899 GTAGAACAAAATTACTTAGTTGCCATG 57.658 33.333 0.00 0.00 0.00 3.66
2850 3273 8.421002 AGAACAAAATTACTTAGTTGCCATGTT 58.579 29.630 0.00 0.00 0.00 2.71
2851 3274 8.587952 AACAAAATTACTTAGTTGCCATGTTC 57.412 30.769 0.00 0.00 0.00 3.18
2852 3275 7.951591 ACAAAATTACTTAGTTGCCATGTTCT 58.048 30.769 0.00 0.00 0.00 3.01
2854 3490 5.567138 ATTACTTAGTTGCCATGTTCTGC 57.433 39.130 0.00 0.00 0.00 4.26
2861 3497 2.629656 GCCATGTTCTGCGCAGGTT 61.630 57.895 35.36 15.91 0.00 3.50
2862 3498 1.959085 CCATGTTCTGCGCAGGTTT 59.041 52.632 35.36 16.26 0.00 3.27
2864 3500 1.269726 CCATGTTCTGCGCAGGTTTTT 60.270 47.619 35.36 15.21 0.00 1.94
2866 3502 0.028770 TGTTCTGCGCAGGTTTTTCG 59.971 50.000 35.36 10.25 0.00 3.46
2867 3503 0.660300 GTTCTGCGCAGGTTTTTCGG 60.660 55.000 35.36 9.46 0.00 4.30
2875 3511 0.249280 CAGGTTTTTCGGTGTTGCCC 60.249 55.000 0.00 0.00 0.00 5.36
2878 3514 0.458260 GTTTTTCGGTGTTGCCCAGT 59.542 50.000 0.00 0.00 0.00 4.00
2905 3541 0.552848 AGGATTTCGGGTGGCATGAT 59.447 50.000 0.00 0.00 0.00 2.45
2959 3595 1.754226 CTCCAGCCTTCTCAGTCCTAC 59.246 57.143 0.00 0.00 0.00 3.18
2995 3631 4.445448 GGAAGGTGAAGCTCATACCATCAT 60.445 45.833 16.19 3.07 34.73 2.45
2997 3633 5.121380 AGGTGAAGCTCATACCATCATTT 57.879 39.130 14.23 0.00 36.94 2.32
2998 3634 6.252599 AGGTGAAGCTCATACCATCATTTA 57.747 37.500 14.23 0.00 36.94 1.40
2999 3635 6.845908 AGGTGAAGCTCATACCATCATTTAT 58.154 36.000 14.23 0.00 36.94 1.40
3000 3636 6.713903 AGGTGAAGCTCATACCATCATTTATG 59.286 38.462 14.23 0.00 36.94 1.90
3021 3694 8.823220 TTATGGCTAAAAAGGAAGATAAAGCT 57.177 30.769 0.00 0.00 0.00 3.74
3025 3698 6.071896 GGCTAAAAAGGAAGATAAAGCTGTGT 60.072 38.462 0.00 0.00 0.00 3.72
3030 3703 9.696917 AAAAAGGAAGATAAAGCTGTGTAATTG 57.303 29.630 0.00 0.00 0.00 2.32
3031 3704 8.635765 AAAGGAAGATAAAGCTGTGTAATTGA 57.364 30.769 0.00 0.00 0.00 2.57
3035 3708 8.341173 GGAAGATAAAGCTGTGTAATTGAGATG 58.659 37.037 0.00 0.00 0.00 2.90
3036 3709 7.256756 AGATAAAGCTGTGTAATTGAGATGC 57.743 36.000 0.00 0.00 0.00 3.91
3039 3712 2.681848 AGCTGTGTAATTGAGATGCAGC 59.318 45.455 0.00 0.00 45.51 5.25
3040 3713 2.223433 GCTGTGTAATTGAGATGCAGCC 60.223 50.000 0.00 0.00 41.12 4.85
3041 3714 3.276857 CTGTGTAATTGAGATGCAGCCT 58.723 45.455 0.00 0.00 0.00 4.58
3042 3715 4.445453 CTGTGTAATTGAGATGCAGCCTA 58.555 43.478 0.00 0.00 0.00 3.93
3043 3716 4.191544 TGTGTAATTGAGATGCAGCCTAC 58.808 43.478 0.00 0.00 0.00 3.18
3044 3717 4.191544 GTGTAATTGAGATGCAGCCTACA 58.808 43.478 0.00 0.00 0.00 2.74
3045 3718 4.818546 GTGTAATTGAGATGCAGCCTACAT 59.181 41.667 0.00 0.00 0.00 2.29
3046 3719 4.818005 TGTAATTGAGATGCAGCCTACATG 59.182 41.667 0.00 0.00 0.00 3.21
3047 3720 3.851458 ATTGAGATGCAGCCTACATGA 57.149 42.857 0.00 0.00 0.00 3.07
3048 3721 3.632643 TTGAGATGCAGCCTACATGAA 57.367 42.857 0.00 0.00 0.00 2.57
3049 3722 3.851458 TGAGATGCAGCCTACATGAAT 57.149 42.857 0.00 0.00 0.00 2.57
3050 3723 3.736720 TGAGATGCAGCCTACATGAATC 58.263 45.455 0.00 0.00 33.48 2.52
3051 3724 2.735663 GAGATGCAGCCTACATGAATCG 59.264 50.000 0.00 0.00 37.72 3.34
3052 3725 2.103771 AGATGCAGCCTACATGAATCGT 59.896 45.455 0.00 0.00 37.72 3.73
3053 3726 2.401583 TGCAGCCTACATGAATCGTT 57.598 45.000 0.00 0.00 0.00 3.85
3054 3727 2.009051 TGCAGCCTACATGAATCGTTG 58.991 47.619 0.00 0.00 0.00 4.10
3055 3728 2.279741 GCAGCCTACATGAATCGTTGA 58.720 47.619 0.00 0.00 0.00 3.18
3056 3729 2.874701 GCAGCCTACATGAATCGTTGAT 59.125 45.455 0.00 0.00 0.00 2.57
3058 3731 2.874701 AGCCTACATGAATCGTTGATGC 59.125 45.455 0.00 0.00 0.00 3.91
3059 3732 2.348872 GCCTACATGAATCGTTGATGCG 60.349 50.000 0.00 0.00 0.00 4.73
3060 3733 2.866156 CCTACATGAATCGTTGATGCGT 59.134 45.455 0.00 0.00 0.00 5.24
3062 3735 3.121559 ACATGAATCGTTGATGCGTTG 57.878 42.857 0.00 0.00 0.00 4.10
3064 3737 1.518325 TGAATCGTTGATGCGTTGGT 58.482 45.000 0.00 0.00 0.00 3.67
3065 3738 2.689646 TGAATCGTTGATGCGTTGGTA 58.310 42.857 0.00 0.00 0.00 3.25
3067 3740 4.434520 TGAATCGTTGATGCGTTGGTATA 58.565 39.130 0.00 0.00 0.00 1.47
3068 3741 4.269123 TGAATCGTTGATGCGTTGGTATAC 59.731 41.667 0.00 0.00 0.00 1.47
3069 3742 3.233684 TCGTTGATGCGTTGGTATACA 57.766 42.857 5.01 0.00 0.00 2.29
3070 3743 3.787785 TCGTTGATGCGTTGGTATACAT 58.212 40.909 5.01 0.00 0.00 2.29
3072 3745 4.741185 TCGTTGATGCGTTGGTATACATAC 59.259 41.667 5.01 1.10 0.00 2.39
3089 3773 3.748048 ACATACATTGTCTGTGCAGTGAC 59.252 43.478 6.99 10.97 38.92 3.67
3092 3776 1.802960 CATTGTCTGTGCAGTGACTCC 59.197 52.381 16.73 0.00 34.57 3.85
3111 3795 0.677288 CGTGGGTTGGAGTGACACTA 59.323 55.000 8.41 0.00 0.00 2.74
3112 3796 1.604693 CGTGGGTTGGAGTGACACTAC 60.605 57.143 11.19 11.19 0.00 2.73
3119 3803 3.746045 TGGAGTGACACTACCAAGTTC 57.254 47.619 15.43 0.00 31.97 3.01
3131 3815 0.038310 CCAAGTTCAGAACCCCTCCC 59.962 60.000 9.85 0.00 0.00 4.30
3200 3884 1.681327 GGCTCCACTAGACCCGTCA 60.681 63.158 0.00 0.00 0.00 4.35
3206 3890 0.811915 CACTAGACCCGTCAGTGGAG 59.188 60.000 14.49 1.64 36.26 3.86
3222 3906 5.536538 TCAGTGGAGCACTATATTCAGGTAG 59.463 44.000 0.00 0.00 43.43 3.18
3223 3907 5.303078 CAGTGGAGCACTATATTCAGGTAGT 59.697 44.000 0.00 0.00 43.43 2.73
3225 3909 6.717540 AGTGGAGCACTATATTCAGGTAGTAG 59.282 42.308 0.00 0.00 43.46 2.57
3226 3910 6.010850 TGGAGCACTATATTCAGGTAGTAGG 58.989 44.000 0.00 0.00 30.37 3.18
3228 3912 6.376018 GGAGCACTATATTCAGGTAGTAGGAG 59.624 46.154 0.00 0.00 30.37 3.69
3231 3915 4.701171 ACTATATTCAGGTAGTAGGAGCGC 59.299 45.833 0.00 0.00 29.75 5.92
3232 3916 1.041437 ATTCAGGTAGTAGGAGCGCC 58.959 55.000 2.29 0.00 0.00 6.53
3235 3919 0.535335 CAGGTAGTAGGAGCGCCAAA 59.465 55.000 9.88 0.00 36.29 3.28
3236 3920 1.066430 CAGGTAGTAGGAGCGCCAAAA 60.066 52.381 9.88 0.00 36.29 2.44
3238 3922 2.238898 AGGTAGTAGGAGCGCCAAAATT 59.761 45.455 9.88 0.00 36.29 1.82
3239 3923 2.354821 GGTAGTAGGAGCGCCAAAATTG 59.645 50.000 9.88 0.00 36.29 2.32
3240 3924 0.811281 AGTAGGAGCGCCAAAATTGC 59.189 50.000 9.88 0.00 36.29 3.56
3241 3925 0.179137 GTAGGAGCGCCAAAATTGCC 60.179 55.000 9.88 0.00 36.29 4.52
3243 3927 1.153765 GGAGCGCCAAAATTGCCTC 60.154 57.895 2.29 0.00 0.00 4.70
3244 3928 1.514873 GAGCGCCAAAATTGCCTCG 60.515 57.895 2.29 0.00 0.00 4.63
3245 3929 2.506881 GCGCCAAAATTGCCTCGG 60.507 61.111 0.00 0.00 0.00 4.63
3247 3931 1.444212 CGCCAAAATTGCCTCGGTG 60.444 57.895 0.00 0.00 0.00 4.94
3249 3933 0.885196 GCCAAAATTGCCTCGGTGTA 59.115 50.000 0.00 0.00 0.00 2.90
3250 3934 1.271102 GCCAAAATTGCCTCGGTGTAA 59.729 47.619 0.00 0.00 0.00 2.41
3251 3935 2.288518 GCCAAAATTGCCTCGGTGTAAA 60.289 45.455 0.00 0.00 0.00 2.01
3254 4302 3.653539 AAATTGCCTCGGTGTAAAACC 57.346 42.857 0.00 0.00 46.60 3.27
3274 4329 3.131396 CCTTTCTATACGTGATGCACCC 58.869 50.000 0.00 0.00 0.00 4.61
3278 4333 2.034179 TCTATACGTGATGCACCCTTCG 59.966 50.000 0.00 0.00 0.00 3.79
3283 4338 0.392998 GTGATGCACCCTTCGGATGT 60.393 55.000 0.00 0.00 0.00 3.06
3284 4339 1.134521 GTGATGCACCCTTCGGATGTA 60.135 52.381 0.00 0.00 0.00 2.29
3288 4343 3.080300 TGCACCCTTCGGATGTAAATT 57.920 42.857 0.00 0.00 0.00 1.82
3289 4344 3.426615 TGCACCCTTCGGATGTAAATTT 58.573 40.909 0.00 0.00 0.00 1.82
3297 4352 5.822519 CCTTCGGATGTAAATTTCCATCTCA 59.177 40.000 19.47 7.20 38.02 3.27
3300 4355 6.591001 TCGGATGTAAATTTCCATCTCATCA 58.409 36.000 19.47 1.82 38.02 3.07
3301 4356 6.483307 TCGGATGTAAATTTCCATCTCATCAC 59.517 38.462 19.47 5.04 38.02 3.06
3302 4357 6.260714 CGGATGTAAATTTCCATCTCATCACA 59.739 38.462 19.47 4.95 38.02 3.58
3303 4358 7.420800 GGATGTAAATTTCCATCTCATCACAC 58.579 38.462 19.47 1.55 38.02 3.82
3305 4360 5.652014 TGTAAATTTCCATCTCATCACACCC 59.348 40.000 0.00 0.00 0.00 4.61
3307 4362 4.531357 ATTTCCATCTCATCACACCCAT 57.469 40.909 0.00 0.00 0.00 4.00
3311 4369 4.233729 TCCATCTCATCACACCCATGATA 58.766 43.478 0.00 0.00 37.20 2.15
3319 4377 0.848735 ACACCCATGATATGCAGCCT 59.151 50.000 0.00 0.00 0.00 4.58
3338 4396 1.658717 GGATCGATCGCTGTGACCG 60.659 63.158 18.81 0.00 0.00 4.79
3339 4397 1.658717 GATCGATCGCTGTGACCGG 60.659 63.158 11.09 0.00 0.00 5.28
3361 4419 1.243342 CGGTGGCCAAAGAGATGCAA 61.243 55.000 7.24 0.00 0.00 4.08
3540 4598 2.253758 GCAGAACGCTGACCTTGCA 61.254 57.895 0.00 0.00 45.17 4.08
3557 4615 0.109597 GCACTCTTCACCGCCAATTG 60.110 55.000 0.00 0.00 0.00 2.32
3697 4788 1.083895 TCCTACTTCCCCATGCCCA 59.916 57.895 0.00 0.00 0.00 5.36
3724 4815 1.086696 CAAGGACAAGCCGTGGTATG 58.913 55.000 0.00 0.00 41.78 2.39
3742 4833 1.153369 GCCATCGAGCAAGGTAGCA 60.153 57.895 0.00 0.00 36.85 3.49
3772 4863 1.423721 CGTCATGTCCACGGAGCATG 61.424 60.000 16.31 16.31 33.46 4.06
3799 4890 1.405821 CGGAGAAGTCGGAGCAAGTAT 59.594 52.381 0.00 0.00 0.00 2.12
3820 4911 6.942576 AGTATGTTCTTTTTACCAGCAGACAT 59.057 34.615 0.00 0.00 0.00 3.06
3836 4927 2.169789 CATCAGTCGCGCCTTCCTG 61.170 63.158 0.00 2.69 0.00 3.86
3884 4977 5.122519 TGCTGATGTTTCTGTGTAACTTCA 58.877 37.500 0.00 0.00 37.34 3.02
3904 4997 6.149474 ACTTCAATGCCTTGTGTGAATAGTAC 59.851 38.462 1.49 0.00 33.87 2.73
3916 5009 6.170506 GTGTGAATAGTACAACTGGATGGAA 58.829 40.000 0.00 0.00 0.00 3.53
3928 5021 5.003096 ACTGGATGGAAAAGGATTTGTCT 57.997 39.130 0.00 0.00 39.02 3.41
3934 5027 4.211920 TGGAAAAGGATTTGTCTTCGGTT 58.788 39.130 0.00 0.00 39.02 4.44
3946 5039 2.099263 GTCTTCGGTTGATCGATCCAGA 59.901 50.000 22.31 11.10 39.03 3.86
3949 5042 1.136305 TCGGTTGATCGATCCAGAACC 59.864 52.381 25.52 25.52 33.92 3.62
4001 5094 9.403110 CTTCTGAAGATCAAAACCAAATAGTTG 57.597 33.333 12.01 0.00 34.25 3.16
4002 5095 8.463930 TCTGAAGATCAAAACCAAATAGTTGT 57.536 30.769 1.80 0.00 32.40 3.32
4006 5123 9.185192 GAAGATCAAAACCAAATAGTTGTTCTG 57.815 33.333 1.80 0.00 32.85 3.02
4026 5143 1.002792 GGTTCTTGCCTTGTTGACGTC 60.003 52.381 9.11 9.11 0.00 4.34
4034 5151 0.307760 CTTGTTGACGTCCCTGCAAC 59.692 55.000 14.12 11.38 41.57 4.17
4035 5152 0.107410 TTGTTGACGTCCCTGCAACT 60.107 50.000 14.12 0.00 41.71 3.16
4036 5153 0.813610 TGTTGACGTCCCTGCAACTG 60.814 55.000 14.12 0.00 41.71 3.16
4037 5154 1.891919 TTGACGTCCCTGCAACTGC 60.892 57.895 14.12 0.00 42.50 4.40
4131 5249 1.959226 CGTGGACCCGGACTTTGTG 60.959 63.158 0.73 0.00 0.00 3.33
4202 5325 2.032550 ACTGCAACGCATCATATTCAGC 59.967 45.455 0.00 0.00 38.13 4.26
4409 5532 2.270527 GAGCAGGAGGGTTCAGCC 59.729 66.667 0.00 0.00 0.00 4.85
4417 5540 3.319198 GGGTTCAGCCTGGACGGA 61.319 66.667 0.00 0.00 37.43 4.69
4440 5563 6.040842 GGATTCTCTCTGATTGTAAGAGCTCT 59.959 42.308 11.45 11.45 40.87 4.09
4442 5565 7.566760 TTCTCTCTGATTGTAAGAGCTCTAG 57.433 40.000 18.59 8.93 40.87 2.43
4446 5569 6.323482 TCTCTGATTGTAAGAGCTCTAGCAAT 59.677 38.462 29.92 29.92 45.16 3.56
4447 5570 7.503902 TCTCTGATTGTAAGAGCTCTAGCAATA 59.496 37.037 29.72 20.16 45.16 1.90
4449 5572 8.140628 TCTGATTGTAAGAGCTCTAGCAATAAG 58.859 37.037 29.82 29.82 45.16 1.73
4450 5573 7.786030 TGATTGTAAGAGCTCTAGCAATAAGT 58.214 34.615 29.72 18.09 45.16 2.24
4451 5574 8.914011 TGATTGTAAGAGCTCTAGCAATAAGTA 58.086 33.333 29.72 19.71 45.16 2.24
4455 5578 9.534565 TGTAAGAGCTCTAGCAATAAGTATTTG 57.465 33.333 18.59 0.00 45.16 2.32
4456 5579 9.535878 GTAAGAGCTCTAGCAATAAGTATTTGT 57.464 33.333 18.59 0.00 45.16 2.83
4457 5580 8.430801 AAGAGCTCTAGCAATAAGTATTTGTG 57.569 34.615 18.59 0.00 45.16 3.33
4458 5581 7.560368 AGAGCTCTAGCAATAAGTATTTGTGT 58.440 34.615 16.50 0.00 45.16 3.72
4461 5584 7.607991 AGCTCTAGCAATAAGTATTTGTGTGTT 59.392 33.333 4.54 0.00 45.16 3.32
4462 5585 8.237267 GCTCTAGCAATAAGTATTTGTGTGTTT 58.763 33.333 0.00 0.00 41.59 2.83
4464 5587 9.891828 TCTAGCAATAAGTATTTGTGTGTTTTG 57.108 29.630 0.00 0.00 0.00 2.44
4466 5589 8.940768 AGCAATAAGTATTTGTGTGTTTTGTT 57.059 26.923 0.00 0.00 0.00 2.83
4468 5591 9.980780 GCAATAAGTATTTGTGTGTTTTGTTTT 57.019 25.926 0.00 0.00 0.00 2.43
4472 5595 8.608844 AAGTATTTGTGTGTTTTGTTTTCCAA 57.391 26.923 0.00 0.00 0.00 3.53
4473 5596 8.608844 AGTATTTGTGTGTTTTGTTTTCCAAA 57.391 26.923 0.00 0.00 41.25 3.28
4474 5597 8.716909 AGTATTTGTGTGTTTTGTTTTCCAAAG 58.283 29.630 0.00 0.00 43.63 2.77
4479 5602 3.668447 TGTTTTGTTTTCCAAAGCAGCA 58.332 36.364 0.00 0.00 45.63 4.41
4481 5604 4.516698 TGTTTTGTTTTCCAAAGCAGCAAA 59.483 33.333 0.00 0.00 45.63 3.68
4482 5605 5.182760 TGTTTTGTTTTCCAAAGCAGCAAAT 59.817 32.000 0.00 0.00 45.63 2.32
4486 5609 5.669477 TGTTTTCCAAAGCAGCAAATACTT 58.331 33.333 0.00 0.00 0.00 2.24
4487 5610 6.112058 TGTTTTCCAAAGCAGCAAATACTTT 58.888 32.000 0.00 0.00 34.03 2.66
4489 5612 4.935352 TCCAAAGCAGCAAATACTTTGT 57.065 36.364 12.24 0.00 45.58 2.83
4491 5614 6.398234 TCCAAAGCAGCAAATACTTTGTAA 57.602 33.333 12.24 0.24 45.58 2.41
4493 5616 7.441017 TCCAAAGCAGCAAATACTTTGTAATT 58.559 30.769 12.24 0.00 45.58 1.40
4494 5617 7.930865 TCCAAAGCAGCAAATACTTTGTAATTT 59.069 29.630 12.24 0.00 45.58 1.82
4496 5619 9.934190 CAAAGCAGCAAATACTTTGTAATTTTT 57.066 25.926 6.56 0.00 43.28 1.94
4519 5642 8.770438 TTTAATTGGTGAAAATCCTGCATTAC 57.230 30.769 0.00 0.00 0.00 1.89
4523 5646 5.815581 TGGTGAAAATCCTGCATTACTACT 58.184 37.500 0.00 0.00 0.00 2.57
4524 5647 5.647658 TGGTGAAAATCCTGCATTACTACTG 59.352 40.000 0.00 0.00 0.00 2.74
4525 5648 5.648092 GGTGAAAATCCTGCATTACTACTGT 59.352 40.000 0.00 0.00 0.00 3.55
4527 5650 7.201617 GGTGAAAATCCTGCATTACTACTGTAC 60.202 40.741 0.00 0.00 0.00 2.90
4528 5651 7.333423 GTGAAAATCCTGCATTACTACTGTACA 59.667 37.037 0.00 0.00 0.00 2.90
4529 5652 8.046708 TGAAAATCCTGCATTACTACTGTACAT 58.953 33.333 0.00 0.00 0.00 2.29
4530 5653 7.792374 AAATCCTGCATTACTACTGTACATG 57.208 36.000 0.00 0.00 0.00 3.21
4533 5656 7.833285 TCCTGCATTACTACTGTACATGATA 57.167 36.000 0.00 0.00 0.00 2.15
4537 5660 9.133627 CTGCATTACTACTGTACATGATATGTC 57.866 37.037 0.00 0.00 43.67 3.06
4540 5663 9.678941 CATTACTACTGTACATGATATGTCGTT 57.321 33.333 0.00 0.00 43.67 3.85
4554 5677 2.821546 TGTCGTTCTCTGACAACCTTG 58.178 47.619 0.00 0.00 42.99 3.61
4564 5687 3.502164 ACAACCTTGTCTTGCTGCT 57.498 47.368 0.00 0.00 36.50 4.24
4566 5689 0.318445 CAACCTTGTCTTGCTGCTGC 60.318 55.000 8.89 8.89 40.20 5.25
4570 5693 1.455402 TTGTCTTGCTGCTGCCCAA 60.455 52.632 13.47 7.85 38.71 4.12
4573 5696 1.176527 GTCTTGCTGCTGCCCAAATA 58.823 50.000 13.47 0.00 38.71 1.40
4671 5794 3.211045 GTTGGTTCAGGTAAGCTTCACA 58.789 45.455 0.00 0.00 36.51 3.58
4673 5796 3.674997 TGGTTCAGGTAAGCTTCACATC 58.325 45.455 0.00 0.00 36.51 3.06
4674 5797 3.327757 TGGTTCAGGTAAGCTTCACATCT 59.672 43.478 0.00 0.00 36.51 2.90
4675 5798 4.202461 TGGTTCAGGTAAGCTTCACATCTT 60.202 41.667 0.00 0.00 36.51 2.40
4727 5850 4.957971 ACGAAGTTAACAATTGATGCTCG 58.042 39.130 13.59 13.59 37.78 5.03
4740 5863 0.673644 ATGCTCGGTTTCCTCAACGG 60.674 55.000 0.00 0.00 36.05 4.44
4850 5973 3.308053 CAGATGATCCAAGTGCAGTTACG 59.692 47.826 6.43 0.21 0.00 3.18
4956 6085 4.558470 CGAACGCTGAATTGCAATTAACAT 59.442 37.500 24.15 9.14 0.00 2.71
5013 6142 8.462016 AGATTTATCAGTTTGAGTAATTGTGCC 58.538 33.333 0.00 0.00 0.00 5.01
5268 6402 5.938125 GTCTAGAGGTTTTGGCAGTAAATGA 59.062 40.000 0.00 0.00 0.00 2.57
5301 6435 6.099269 GGGTTATGTCTACTATTCACCAAGGA 59.901 42.308 0.00 0.00 0.00 3.36
5347 6482 0.116143 AAATGGCCCCCACTTTGCTA 59.884 50.000 0.00 0.00 35.80 3.49
5383 6518 2.194859 AGCAAGGTGATCCTCACTCAT 58.805 47.619 7.17 0.00 46.19 2.90
5454 6589 9.604626 CAGAAAGTTGTCAATAGAAACTTGATC 57.395 33.333 1.15 0.00 41.93 2.92
5689 6831 5.220854 GCTCAAGTTTTCTGTTGTCAGCTTA 60.221 40.000 0.00 0.00 41.10 3.09
5738 6881 7.290481 AGGGGTGCCTTTACATTTTAAAAACTA 59.710 33.333 4.44 0.00 0.00 2.24
5840 6983 3.384789 GGGGCAAATTGATCCTTCTTACC 59.615 47.826 0.00 0.00 0.00 2.85
5898 7041 9.921637 TGTCTATTGTTAAATTTCCCAAATGAC 57.078 29.630 18.55 18.55 0.00 3.06
5901 7044 9.369904 CTATTGTTAAATTTCCCAAATGACCTG 57.630 33.333 0.00 0.00 0.00 4.00
6003 7147 4.570719 GGGGACTGATTTCCAGGAAGAAAT 60.571 45.833 1.07 0.00 46.58 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.529773 CACCGCCGTATGTATGCACT 60.530 55.000 0.00 0.00 0.00 4.40
13 14 4.728102 CGAACCAGCACCGCCGTA 62.728 66.667 0.00 0.00 0.00 4.02
19 20 1.668151 GACAGGACGAACCAGCACC 60.668 63.158 0.00 0.00 42.04 5.01
42 43 8.974060 TGGAATACAACAGTCTTTAAAAGAGT 57.026 30.769 0.00 0.00 41.81 3.24
85 86 9.710900 CTTTTGAATAGAAGGCCTTTTTACATT 57.289 29.630 21.54 10.75 0.00 2.71
96 97 7.811713 GGCAATATCATCTTTTGAATAGAAGGC 59.188 37.037 0.00 0.00 38.03 4.35
114 115 2.749621 GTTCCATGATCCCGGCAATATC 59.250 50.000 0.00 0.00 0.00 1.63
117 118 0.552848 AGTTCCATGATCCCGGCAAT 59.447 50.000 0.00 0.00 0.00 3.56
122 123 3.562973 CAGAAATCAGTTCCATGATCCCG 59.437 47.826 0.00 0.00 39.00 5.14
157 163 5.254901 AGTACGGGTAATGGCAAAACATTA 58.745 37.500 0.00 0.00 41.12 1.90
171 177 2.181125 TGGCAATCAGAAGTACGGGTA 58.819 47.619 0.00 0.00 0.00 3.69
172 178 0.981183 TGGCAATCAGAAGTACGGGT 59.019 50.000 0.00 0.00 0.00 5.28
202 215 5.728351 TGTGCAGGCGAATTAAATACTAC 57.272 39.130 0.00 0.00 0.00 2.73
216 232 1.378531 TTAATCACCGATGTGCAGGC 58.621 50.000 0.00 0.00 42.46 4.85
223 239 6.347402 CCCGTAAAGCTAATTAATCACCGATG 60.347 42.308 0.00 0.00 0.00 3.84
284 300 8.793592 CAAGCCATATCTATGTGTGTACTAGTA 58.206 37.037 0.00 0.00 31.82 1.82
285 301 7.661968 CAAGCCATATCTATGTGTGTACTAGT 58.338 38.462 0.00 0.00 31.82 2.57
286 302 6.587990 GCAAGCCATATCTATGTGTGTACTAG 59.412 42.308 0.00 0.00 31.82 2.57
378 395 1.615107 CGTGAAAGTCTTCCGTCGGC 61.615 60.000 6.34 0.00 0.00 5.54
394 411 3.684103 TTAAAAGTGTCACTTGGCGTG 57.316 42.857 18.84 0.00 45.18 5.34
430 447 1.398692 TGTTGGGAACTTTCAGGCAC 58.601 50.000 0.00 0.00 0.00 5.01
431 448 2.238521 GATGTTGGGAACTTTCAGGCA 58.761 47.619 0.00 0.00 0.00 4.75
470 490 1.066143 CAAGATACTTCGGCCAGTGGT 60.066 52.381 11.74 0.00 0.00 4.16
472 492 1.207089 TCCAAGATACTTCGGCCAGTG 59.793 52.381 2.24 0.00 0.00 3.66
613 636 2.021722 CCGAATGGCCACCGTTATG 58.978 57.895 22.79 8.29 32.23 1.90
626 649 2.436646 CTGTCGCTTGGGCCGAAT 60.437 61.111 0.00 0.00 34.44 3.34
802 837 3.755628 CCCCGAAAGCGACCGAGA 61.756 66.667 0.00 0.00 40.82 4.04
862 900 2.670148 GGCCTGTGGGGACGAGAAT 61.670 63.158 0.00 0.00 37.23 2.40
878 916 1.413767 CGATACACGAGCACTGTGGC 61.414 60.000 10.21 2.10 45.77 5.01
879 917 0.109272 ACGATACACGAGCACTGTGG 60.109 55.000 10.21 0.00 45.77 4.17
881 919 1.668919 CCAACGATACACGAGCACTGT 60.669 52.381 0.00 0.00 45.77 3.55
883 921 0.601558 ACCAACGATACACGAGCACT 59.398 50.000 0.00 0.00 45.77 4.40
884 922 0.713883 CACCAACGATACACGAGCAC 59.286 55.000 0.00 0.00 45.77 4.40
885 923 0.315886 ACACCAACGATACACGAGCA 59.684 50.000 0.00 0.00 45.77 4.26
930 969 2.504274 TACTATGGCGGCGGGGAAG 61.504 63.158 9.78 0.00 0.00 3.46
937 976 3.028590 GCGACGTACTATGGCGGC 61.029 66.667 0.00 0.00 0.00 6.53
971 1010 1.070577 CAAACTGCACGGACGAAGAAG 60.071 52.381 0.00 0.00 0.00 2.85
972 1011 0.934496 CAAACTGCACGGACGAAGAA 59.066 50.000 0.00 0.00 0.00 2.52
973 1012 1.495584 GCAAACTGCACGGACGAAGA 61.496 55.000 0.00 0.00 44.26 2.87
1051 1101 1.678970 GGAGCGAAACCCATTGCCT 60.679 57.895 0.00 0.00 0.00 4.75
1055 1105 0.323451 GGGAAGGAGCGAAACCCATT 60.323 55.000 0.00 0.00 40.20 3.16
1081 1131 2.972713 AGAAGCACTAGAAGGACACCAA 59.027 45.455 0.00 0.00 0.00 3.67
1086 1136 3.259625 AGACCAAGAAGCACTAGAAGGAC 59.740 47.826 0.00 0.00 0.00 3.85
1091 1141 2.232452 GCAGAGACCAAGAAGCACTAGA 59.768 50.000 0.00 0.00 0.00 2.43
1094 1144 0.320247 CGCAGAGACCAAGAAGCACT 60.320 55.000 0.00 0.00 0.00 4.40
1153 1212 1.750572 GAAGCTCTCGTGCAGCATCG 61.751 60.000 0.00 4.61 39.56 3.84
1205 1264 3.449227 CACGACTCCAGCGGCCTA 61.449 66.667 0.00 0.00 0.00 3.93
1387 1446 9.255304 GCAGGTGAATGTTAATCTTTTGTTTAA 57.745 29.630 0.00 0.00 0.00 1.52
1390 1449 6.925165 CAGCAGGTGAATGTTAATCTTTTGTT 59.075 34.615 0.00 0.00 0.00 2.83
1392 1451 6.449698 ACAGCAGGTGAATGTTAATCTTTTG 58.550 36.000 6.61 0.00 0.00 2.44
1395 1454 6.655078 AAACAGCAGGTGAATGTTAATCTT 57.345 33.333 6.61 0.00 36.18 2.40
1399 1458 6.321181 AGAAGAAAACAGCAGGTGAATGTTAA 59.679 34.615 6.61 0.00 36.18 2.01
1400 1459 5.827797 AGAAGAAAACAGCAGGTGAATGTTA 59.172 36.000 6.61 0.00 36.18 2.41
1408 1467 2.910688 TCGAGAAGAAAACAGCAGGT 57.089 45.000 0.00 0.00 0.00 4.00
1420 1479 9.270576 CATCACATCATTTTAAGTTTCGAGAAG 57.729 33.333 0.00 0.00 0.00 2.85
1425 1484 9.782028 CAAAACATCACATCATTTTAAGTTTCG 57.218 29.630 0.00 0.00 0.00 3.46
1434 1493 8.596293 AGGATAAACCAAAACATCACATCATTT 58.404 29.630 0.00 0.00 42.04 2.32
1436 1495 7.147846 GGAGGATAAACCAAAACATCACATCAT 60.148 37.037 0.00 0.00 42.04 2.45
1487 1551 5.048713 GTCCTGGAAAACGAATCAAATCACT 60.049 40.000 0.00 0.00 0.00 3.41
1527 1595 3.564225 CGAGAGGCAAAAGTAAACCTGTT 59.436 43.478 0.00 0.00 30.95 3.16
1529 1597 3.399330 TCGAGAGGCAAAAGTAAACCTG 58.601 45.455 0.00 0.00 30.95 4.00
1530 1598 3.764237 TCGAGAGGCAAAAGTAAACCT 57.236 42.857 0.00 0.00 34.43 3.50
1532 1600 4.000988 TCCATCGAGAGGCAAAAGTAAAC 58.999 43.478 1.91 0.00 0.00 2.01
1536 1604 1.347707 TGTCCATCGAGAGGCAAAAGT 59.652 47.619 1.91 0.00 0.00 2.66
1538 1606 2.358957 CATGTCCATCGAGAGGCAAAA 58.641 47.619 1.91 0.00 0.00 2.44
1542 1610 0.250209 ATGCATGTCCATCGAGAGGC 60.250 55.000 0.00 0.00 39.36 4.70
1543 1611 1.202615 ACATGCATGTCCATCGAGAGG 60.203 52.381 26.61 0.00 35.87 3.69
1544 1612 1.865340 CACATGCATGTCCATCGAGAG 59.135 52.381 29.23 11.22 39.39 3.20
1546 1614 1.944032 TCACATGCATGTCCATCGAG 58.056 50.000 29.23 16.10 39.39 4.04
1547 1615 2.399916 TTCACATGCATGTCCATCGA 57.600 45.000 29.23 19.53 39.39 3.59
1548 1616 2.614983 TGATTCACATGCATGTCCATCG 59.385 45.455 29.23 17.53 39.39 3.84
1550 1618 5.607939 AAATGATTCACATGCATGTCCAT 57.392 34.783 29.23 22.19 39.39 3.41
1551 1619 5.653330 AGTAAATGATTCACATGCATGTCCA 59.347 36.000 29.23 22.15 39.39 4.02
1552 1620 6.140303 AGTAAATGATTCACATGCATGTCC 57.860 37.500 29.23 17.75 39.39 4.02
1553 1621 8.183536 TGTTAGTAAATGATTCACATGCATGTC 58.816 33.333 29.23 18.12 39.39 3.06
1554 1622 8.054152 TGTTAGTAAATGATTCACATGCATGT 57.946 30.769 26.61 26.61 42.84 3.21
1555 1623 8.914328 TTGTTAGTAAATGATTCACATGCATG 57.086 30.769 25.09 25.09 39.39 4.06
1585 1653 4.088762 CCGACCGCATGCACACAC 62.089 66.667 19.57 3.05 0.00 3.82
1597 1665 2.258726 GGAAACACTGCACCCGACC 61.259 63.158 0.00 0.00 0.00 4.79
1599 1667 2.280524 CGGAAACACTGCACCCGA 60.281 61.111 0.00 0.00 42.49 5.14
1604 1672 0.605319 GGACATCCGGAAACACTGCA 60.605 55.000 9.01 0.00 0.00 4.41
1702 1770 1.140652 TGGGAAAGGCAAAGCAAAAGG 59.859 47.619 0.00 0.00 0.00 3.11
1703 1771 2.618442 TGGGAAAGGCAAAGCAAAAG 57.382 45.000 0.00 0.00 0.00 2.27
1704 1772 2.848691 CATGGGAAAGGCAAAGCAAAA 58.151 42.857 0.00 0.00 0.00 2.44
1705 1773 1.542987 GCATGGGAAAGGCAAAGCAAA 60.543 47.619 0.00 0.00 35.05 3.68
1707 1775 1.120184 TGCATGGGAAAGGCAAAGCA 61.120 50.000 0.00 0.00 43.93 3.91
1708 1776 1.672898 TGCATGGGAAAGGCAAAGC 59.327 52.632 0.00 0.00 43.93 3.51
1775 1844 0.824109 CGATCCTGTGGCAACCTAGA 59.176 55.000 0.00 0.00 0.00 2.43
1776 1845 0.537188 ACGATCCTGTGGCAACCTAG 59.463 55.000 0.00 0.00 0.00 3.02
1778 1847 0.249398 GTACGATCCTGTGGCAACCT 59.751 55.000 0.00 0.00 0.00 3.50
1779 1848 0.036765 TGTACGATCCTGTGGCAACC 60.037 55.000 0.00 0.00 0.00 3.77
1792 2052 7.061789 CGCTAAAACATATGATAGCATGTACGA 59.938 37.037 25.09 0.00 40.55 3.43
1795 2055 6.092122 GCCGCTAAAACATATGATAGCATGTA 59.908 38.462 25.09 0.00 40.55 2.29
1796 2056 5.106555 GCCGCTAAAACATATGATAGCATGT 60.107 40.000 25.09 0.00 40.55 3.21
1798 2058 5.003160 TGCCGCTAAAACATATGATAGCAT 58.997 37.500 25.09 0.00 40.55 3.79
1799 2059 4.384940 TGCCGCTAAAACATATGATAGCA 58.615 39.130 25.09 14.35 40.55 3.49
1800 2060 5.147162 GTTGCCGCTAAAACATATGATAGC 58.853 41.667 20.23 20.23 37.88 2.97
1802 2062 5.126779 TGGTTGCCGCTAAAACATATGATA 58.873 37.500 10.38 0.00 0.00 2.15
1803 2063 3.951037 TGGTTGCCGCTAAAACATATGAT 59.049 39.130 10.38 0.00 0.00 2.45
1804 2064 3.348119 TGGTTGCCGCTAAAACATATGA 58.652 40.909 10.38 0.00 0.00 2.15
1805 2065 3.773860 TGGTTGCCGCTAAAACATATG 57.226 42.857 0.00 0.00 0.00 1.78
1806 2066 3.951037 TGATGGTTGCCGCTAAAACATAT 59.049 39.130 0.00 0.00 35.10 1.78
1807 2067 3.348119 TGATGGTTGCCGCTAAAACATA 58.652 40.909 0.00 0.00 35.10 2.29
1822 2105 3.305676 GCTACATATCGAGCACTGATGGT 60.306 47.826 0.00 0.00 38.62 3.55
1831 2114 1.269102 ACGTGGTGCTACATATCGAGC 60.269 52.381 0.00 0.00 39.25 5.03
1833 2116 2.032636 CGTACGTGGTGCTACATATCGA 60.033 50.000 7.22 0.00 0.00 3.59
1834 2117 2.304413 CGTACGTGGTGCTACATATCG 58.696 52.381 7.22 0.00 0.00 2.92
1835 2118 2.291465 TCCGTACGTGGTGCTACATATC 59.709 50.000 15.21 0.00 0.00 1.63
1836 2119 2.292569 CTCCGTACGTGGTGCTACATAT 59.707 50.000 15.21 0.00 0.00 1.78
1837 2120 1.672363 CTCCGTACGTGGTGCTACATA 59.328 52.381 15.21 0.00 0.00 2.29
1838 2121 0.454600 CTCCGTACGTGGTGCTACAT 59.545 55.000 15.21 0.00 0.00 2.29
1839 2122 0.890542 ACTCCGTACGTGGTGCTACA 60.891 55.000 15.21 0.00 0.00 2.74
1840 2123 0.455633 CACTCCGTACGTGGTGCTAC 60.456 60.000 19.46 0.00 0.00 3.58
1841 2124 1.878070 CACTCCGTACGTGGTGCTA 59.122 57.895 19.46 0.00 0.00 3.49
1842 2125 2.649034 CACTCCGTACGTGGTGCT 59.351 61.111 19.46 0.00 0.00 4.40
1856 2158 1.153529 TTGTTCACGTGACGGCACT 60.154 52.632 21.24 3.39 42.93 4.40
1857 2159 1.011574 GTTGTTCACGTGACGGCAC 60.012 57.895 19.90 12.69 41.67 5.01
1860 2162 0.249322 AGGAGTTGTTCACGTGACGG 60.249 55.000 19.90 0.00 0.00 4.79
1899 2202 3.565902 CCTCTTAATGAAGGCGGGAAATC 59.434 47.826 0.00 0.00 33.09 2.17
1900 2203 3.053619 ACCTCTTAATGAAGGCGGGAAAT 60.054 43.478 4.65 0.00 33.09 2.17
1903 2211 1.580059 ACCTCTTAATGAAGGCGGGA 58.420 50.000 4.65 0.00 33.09 5.14
1906 2214 5.354234 ACATAACAACCTCTTAATGAAGGCG 59.646 40.000 0.00 0.00 33.09 5.52
1907 2215 6.759497 ACATAACAACCTCTTAATGAAGGC 57.241 37.500 0.00 0.00 33.09 4.35
1911 2219 7.334921 CCCGTAAACATAACAACCTCTTAATGA 59.665 37.037 0.00 0.00 0.00 2.57
1927 2235 1.821216 CACTGCCTTCCCGTAAACAT 58.179 50.000 0.00 0.00 0.00 2.71
1935 2243 2.225467 GAATCATAGCACTGCCTTCCC 58.775 52.381 0.00 0.00 0.00 3.97
1937 2245 2.555199 ACGAATCATAGCACTGCCTTC 58.445 47.619 0.00 0.00 0.00 3.46
1960 2268 2.646175 CGGACATGACTGGACCGGT 61.646 63.158 6.92 6.92 40.33 5.28
2004 2316 1.340697 TGAGAGCTTGGCATGCTTCAT 60.341 47.619 26.14 16.37 41.30 2.57
2102 2415 6.709018 TTTTCTTTCGAAAAGGAGGTTCAT 57.291 33.333 12.41 0.00 42.51 2.57
2116 2429 6.374707 TGCGCTTGAATTTATTTTCTTTCG 57.625 33.333 9.73 0.00 0.00 3.46
2124 2535 4.499696 GGCCTACATGCGCTTGAATTTATT 60.500 41.667 27.85 7.79 0.00 1.40
2126 2537 2.357637 GGCCTACATGCGCTTGAATTTA 59.642 45.455 27.85 10.15 0.00 1.40
2131 2542 2.124736 GGGCCTACATGCGCTTGA 60.125 61.111 27.85 11.73 40.69 3.02
2138 2549 7.596494 CATTGACAATTAATAGGGCCTACATG 58.404 38.462 17.19 12.53 0.00 3.21
2143 2554 3.897505 GGCATTGACAATTAATAGGGCCT 59.102 43.478 12.58 12.58 34.94 5.19
2149 2560 6.513230 CGCTAAGCAGGCATTGACAATTAATA 60.513 38.462 0.00 0.00 0.00 0.98
2182 2595 7.604657 AAATCGGAACAGAAGGAGTATCTAT 57.395 36.000 0.00 0.00 33.73 1.98
2202 2615 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
2204 2617 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
2206 2619 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2208 2621 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2209 2622 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2210 2623 7.641020 AGTTAAATTTGAACTAAAACCACGACG 59.359 33.333 0.00 0.00 35.36 5.12
2211 2624 8.845942 AGTTAAATTTGAACTAAAACCACGAC 57.154 30.769 0.00 0.00 35.36 4.34
2223 2636 7.639461 TCGTCGTGGTTTTAGTTAAATTTGAAC 59.361 33.333 0.00 2.17 0.00 3.18
2224 2637 7.692088 TCGTCGTGGTTTTAGTTAAATTTGAA 58.308 30.769 0.00 0.00 0.00 2.69
2230 2643 6.734137 TCTACTCGTCGTGGTTTTAGTTAAA 58.266 36.000 0.00 0.00 0.00 1.52
2231 2644 6.312399 TCTACTCGTCGTGGTTTTAGTTAA 57.688 37.500 0.00 0.00 0.00 2.01
2232 2645 5.940192 TCTACTCGTCGTGGTTTTAGTTA 57.060 39.130 0.00 0.00 0.00 2.24
2235 2648 4.027065 CGATCTACTCGTCGTGGTTTTAG 58.973 47.826 0.00 0.00 42.56 1.85
2240 2653 0.107993 TCCGATCTACTCGTCGTGGT 60.108 55.000 0.00 0.00 46.18 4.16
2241 2654 1.012086 TTCCGATCTACTCGTCGTGG 58.988 55.000 0.00 0.00 46.18 4.94
2242 2655 1.591632 CGTTCCGATCTACTCGTCGTG 60.592 57.143 0.00 0.00 46.18 4.35
2244 2657 0.042361 CCGTTCCGATCTACTCGTCG 60.042 60.000 0.00 0.00 46.18 5.12
2245 2658 1.293924 TCCGTTCCGATCTACTCGTC 58.706 55.000 0.00 0.00 46.18 4.20
2246 2659 1.602851 CATCCGTTCCGATCTACTCGT 59.397 52.381 0.00 0.00 46.18 4.18
2248 2661 2.226912 CTCCATCCGTTCCGATCTACTC 59.773 54.545 0.00 0.00 0.00 2.59
2249 2662 2.231529 CTCCATCCGTTCCGATCTACT 58.768 52.381 0.00 0.00 0.00 2.57
2250 2663 1.955080 ACTCCATCCGTTCCGATCTAC 59.045 52.381 0.00 0.00 0.00 2.59
2251 2664 2.359981 ACTCCATCCGTTCCGATCTA 57.640 50.000 0.00 0.00 0.00 1.98
2252 2665 1.955080 GTACTCCATCCGTTCCGATCT 59.045 52.381 0.00 0.00 0.00 2.75
2254 2667 2.068834 AGTACTCCATCCGTTCCGAT 57.931 50.000 0.00 0.00 0.00 4.18
2256 2669 1.475280 TCAAGTACTCCATCCGTTCCG 59.525 52.381 0.00 0.00 0.00 4.30
2257 2670 2.232941 TGTCAAGTACTCCATCCGTTCC 59.767 50.000 0.00 0.00 0.00 3.62
2262 2675 2.731341 CGTCGTGTCAAGTACTCCATCC 60.731 54.545 0.00 0.00 0.00 3.51
2263 2676 2.161012 TCGTCGTGTCAAGTACTCCATC 59.839 50.000 0.00 0.00 0.00 3.51
2264 2677 2.156917 TCGTCGTGTCAAGTACTCCAT 58.843 47.619 0.00 0.00 0.00 3.41
2265 2678 1.534163 CTCGTCGTGTCAAGTACTCCA 59.466 52.381 0.00 0.00 0.00 3.86
2266 2679 1.728502 GCTCGTCGTGTCAAGTACTCC 60.729 57.143 0.00 0.00 0.00 3.85
2267 2680 1.604396 GCTCGTCGTGTCAAGTACTC 58.396 55.000 0.00 0.00 0.00 2.59
2268 2681 0.240411 GGCTCGTCGTGTCAAGTACT 59.760 55.000 0.00 0.00 0.00 2.73
2269 2682 0.240411 AGGCTCGTCGTGTCAAGTAC 59.760 55.000 1.39 0.00 0.00 2.73
2572 2985 1.374252 GTGGGCACTCGATCACGTT 60.374 57.895 0.00 0.00 40.69 3.99
2584 3001 2.992689 TCTTAGCGTCGGTGGGCA 60.993 61.111 7.30 0.00 0.00 5.36
2597 3016 1.678627 GATGCTCTCCGTCTGCTCTTA 59.321 52.381 0.00 0.00 0.00 2.10
2598 3017 0.459489 GATGCTCTCCGTCTGCTCTT 59.541 55.000 0.00 0.00 0.00 2.85
2601 3020 0.175302 CAAGATGCTCTCCGTCTGCT 59.825 55.000 0.00 0.00 39.73 4.24
2602 3021 0.174389 TCAAGATGCTCTCCGTCTGC 59.826 55.000 0.00 0.00 39.73 4.26
2603 3022 2.864946 CAATCAAGATGCTCTCCGTCTG 59.135 50.000 0.00 0.00 39.73 3.51
2604 3023 2.499289 ACAATCAAGATGCTCTCCGTCT 59.501 45.455 0.00 0.00 41.59 4.18
2605 3024 2.606725 CACAATCAAGATGCTCTCCGTC 59.393 50.000 0.00 0.00 0.00 4.79
2607 3026 2.897436 TCACAATCAAGATGCTCTCCG 58.103 47.619 0.00 0.00 0.00 4.63
2608 3027 5.831702 AAATCACAATCAAGATGCTCTCC 57.168 39.130 0.00 0.00 0.00 3.71
2610 3029 7.223260 TGAAAAATCACAATCAAGATGCTCT 57.777 32.000 0.00 0.00 0.00 4.09
2611 3030 7.464178 GCATGAAAAATCACAATCAAGATGCTC 60.464 37.037 0.00 0.00 0.00 4.26
2612 3031 6.312918 GCATGAAAAATCACAATCAAGATGCT 59.687 34.615 0.00 0.00 0.00 3.79
2614 3033 7.589574 TGCATGAAAAATCACAATCAAGATG 57.410 32.000 0.00 0.00 0.00 2.90
2615 3034 7.279981 CCATGCATGAAAAATCACAATCAAGAT 59.720 33.333 28.31 0.00 0.00 2.40
2616 3035 6.592220 CCATGCATGAAAAATCACAATCAAGA 59.408 34.615 28.31 0.00 0.00 3.02
2617 3036 6.370442 ACCATGCATGAAAAATCACAATCAAG 59.630 34.615 28.31 7.14 0.00 3.02
2618 3037 6.147985 CACCATGCATGAAAAATCACAATCAA 59.852 34.615 28.31 0.00 0.00 2.57
2620 3039 5.446741 GCACCATGCATGAAAAATCACAATC 60.447 40.000 28.31 0.00 44.26 2.67
2621 3040 4.393680 GCACCATGCATGAAAAATCACAAT 59.606 37.500 28.31 0.00 44.26 2.71
2622 3041 3.747010 GCACCATGCATGAAAAATCACAA 59.253 39.130 28.31 0.00 44.26 3.33
2623 3042 3.327626 GCACCATGCATGAAAAATCACA 58.672 40.909 28.31 0.00 44.26 3.58
2636 3055 0.104671 AACACAAACCAGCACCATGC 59.895 50.000 0.00 0.00 45.46 4.06
2753 3176 1.227943 ACTGCACATGTCCTTGCGT 60.228 52.632 0.00 0.00 41.96 5.24
2755 3178 0.520404 CTCACTGCACATGTCCTTGC 59.480 55.000 0.00 0.00 39.33 4.01
2756 3179 1.534163 CACTCACTGCACATGTCCTTG 59.466 52.381 0.00 0.00 0.00 3.61
2796 3219 3.570125 TCCAATATACTCTGAGCTCGGTG 59.430 47.826 21.88 21.12 0.00 4.94
2800 3223 8.098286 TCTACTACTCCAATATACTCTGAGCTC 58.902 40.741 6.82 6.82 0.00 4.09
2803 3226 9.562408 TGTTCTACTACTCCAATATACTCTGAG 57.438 37.037 2.45 2.45 0.00 3.35
2820 3243 9.781633 TGGCAACTAAGTAATTTTGTTCTACTA 57.218 29.630 0.00 0.00 33.41 1.82
2821 3244 8.685838 TGGCAACTAAGTAATTTTGTTCTACT 57.314 30.769 0.00 0.00 33.41 2.57
2825 3248 8.587952 AACATGGCAACTAAGTAATTTTGTTC 57.412 30.769 0.00 0.00 33.41 3.18
2827 3250 7.867403 CAGAACATGGCAACTAAGTAATTTTGT 59.133 33.333 0.00 0.00 37.61 2.83
2828 3251 7.148755 GCAGAACATGGCAACTAAGTAATTTTG 60.149 37.037 0.00 0.00 37.61 2.44
2830 3253 6.389906 GCAGAACATGGCAACTAAGTAATTT 58.610 36.000 0.00 0.00 37.61 1.82
2831 3254 5.391950 CGCAGAACATGGCAACTAAGTAATT 60.392 40.000 0.00 0.00 37.61 1.40
2832 3255 4.094887 CGCAGAACATGGCAACTAAGTAAT 59.905 41.667 0.00 0.00 37.61 1.89
2833 3256 3.435327 CGCAGAACATGGCAACTAAGTAA 59.565 43.478 0.00 0.00 37.61 2.24
2834 3257 3.000041 CGCAGAACATGGCAACTAAGTA 59.000 45.455 0.00 0.00 37.61 2.24
2835 3258 1.806542 CGCAGAACATGGCAACTAAGT 59.193 47.619 0.00 0.00 37.61 2.24
2837 3260 0.521291 GCGCAGAACATGGCAACTAA 59.479 50.000 0.30 0.00 37.61 2.24
2838 3261 0.605050 TGCGCAGAACATGGCAACTA 60.605 50.000 5.66 0.00 33.77 2.24
2839 3262 1.859427 CTGCGCAGAACATGGCAACT 61.859 55.000 33.66 0.00 35.53 3.16
2840 3263 1.443194 CTGCGCAGAACATGGCAAC 60.443 57.895 33.66 0.00 35.53 4.17
2841 3264 2.628696 CCTGCGCAGAACATGGCAA 61.629 57.895 38.06 0.00 35.53 4.52
2842 3265 3.057548 CCTGCGCAGAACATGGCA 61.058 61.111 38.06 0.00 34.96 4.92
2843 3266 2.146073 AAACCTGCGCAGAACATGGC 62.146 55.000 38.06 0.00 0.00 4.40
2844 3267 0.314935 AAAACCTGCGCAGAACATGG 59.685 50.000 38.06 23.45 0.00 3.66
2845 3268 2.053627 GAAAAACCTGCGCAGAACATG 58.946 47.619 38.06 22.74 0.00 3.21
2848 3271 0.660300 CCGAAAAACCTGCGCAGAAC 60.660 55.000 38.06 19.08 0.00 3.01
2850 3273 1.525077 ACCGAAAAACCTGCGCAGA 60.525 52.632 38.06 2.29 0.00 4.26
2851 3274 1.370414 CACCGAAAAACCTGCGCAG 60.370 57.895 30.52 30.52 0.00 5.18
2852 3275 1.658686 AACACCGAAAAACCTGCGCA 61.659 50.000 10.98 10.98 0.00 6.09
2854 3490 1.206115 GCAACACCGAAAAACCTGCG 61.206 55.000 0.00 0.00 0.00 5.18
2861 3497 1.104577 GGACTGGGCAACACCGAAAA 61.105 55.000 0.00 0.00 40.62 2.29
2862 3498 1.527380 GGACTGGGCAACACCGAAA 60.527 57.895 0.00 0.00 40.62 3.46
2864 3500 4.308458 CGGACTGGGCAACACCGA 62.308 66.667 0.00 0.00 45.31 4.69
2875 3511 1.369091 CGAAATCCTTGGCCGGACTG 61.369 60.000 9.82 0.28 35.52 3.51
2878 3514 2.270850 CCGAAATCCTTGGCCGGA 59.729 61.111 5.05 1.40 42.49 5.14
2905 3541 1.745890 CGAATGGATGTAGCCGGGA 59.254 57.895 2.18 0.00 0.00 5.14
2968 3604 3.118884 GGTATGAGCTTCACCTTCCGTAA 60.119 47.826 5.35 0.00 0.00 3.18
2971 3607 1.207089 TGGTATGAGCTTCACCTTCCG 59.793 52.381 12.05 0.00 33.28 4.30
2995 3631 9.255029 AGCTTTATCTTCCTTTTTAGCCATAAA 57.745 29.630 0.00 0.00 0.00 1.40
2997 3633 7.834181 ACAGCTTTATCTTCCTTTTTAGCCATA 59.166 33.333 0.00 0.00 0.00 2.74
2998 3634 6.665248 ACAGCTTTATCTTCCTTTTTAGCCAT 59.335 34.615 0.00 0.00 0.00 4.40
2999 3635 6.010219 ACAGCTTTATCTTCCTTTTTAGCCA 58.990 36.000 0.00 0.00 0.00 4.75
3000 3636 6.071896 ACACAGCTTTATCTTCCTTTTTAGCC 60.072 38.462 0.00 0.00 0.00 3.93
3001 3637 6.914259 ACACAGCTTTATCTTCCTTTTTAGC 58.086 36.000 0.00 0.00 0.00 3.09
3014 3687 6.459298 GCTGCATCTCAATTACACAGCTTTAT 60.459 38.462 0.00 0.00 44.25 1.40
3015 3688 5.163723 GCTGCATCTCAATTACACAGCTTTA 60.164 40.000 0.00 0.00 44.25 1.85
3021 3694 3.354948 AGGCTGCATCTCAATTACACA 57.645 42.857 0.50 0.00 0.00 3.72
3025 3698 5.294734 TCATGTAGGCTGCATCTCAATTA 57.705 39.130 15.55 0.00 0.00 1.40
3029 3702 3.736720 GATTCATGTAGGCTGCATCTCA 58.263 45.455 15.55 2.91 0.00 3.27
3030 3703 2.735663 CGATTCATGTAGGCTGCATCTC 59.264 50.000 15.55 11.20 0.00 2.75
3031 3704 2.103771 ACGATTCATGTAGGCTGCATCT 59.896 45.455 15.55 3.46 0.00 2.90
3035 3708 2.279741 TCAACGATTCATGTAGGCTGC 58.720 47.619 0.00 0.00 0.00 5.25
3036 3709 3.303593 GCATCAACGATTCATGTAGGCTG 60.304 47.826 0.00 0.00 0.00 4.85
3039 3712 2.866156 ACGCATCAACGATTCATGTAGG 59.134 45.455 0.00 0.00 36.70 3.18
3040 3713 4.266157 CAACGCATCAACGATTCATGTAG 58.734 43.478 0.00 0.00 36.70 2.74
3041 3714 3.063316 CCAACGCATCAACGATTCATGTA 59.937 43.478 0.00 0.00 36.70 2.29
3042 3715 2.159531 CCAACGCATCAACGATTCATGT 60.160 45.455 0.00 0.00 36.70 3.21
3043 3716 2.159531 ACCAACGCATCAACGATTCATG 60.160 45.455 0.00 0.00 36.70 3.07
3044 3717 2.083774 ACCAACGCATCAACGATTCAT 58.916 42.857 0.00 0.00 36.70 2.57
3045 3718 1.518325 ACCAACGCATCAACGATTCA 58.482 45.000 0.00 0.00 36.70 2.57
3046 3719 3.944422 ATACCAACGCATCAACGATTC 57.056 42.857 0.00 0.00 36.70 2.52
3047 3720 4.185394 TGTATACCAACGCATCAACGATT 58.815 39.130 0.00 0.00 36.70 3.34
3048 3721 3.787785 TGTATACCAACGCATCAACGAT 58.212 40.909 0.00 0.00 36.70 3.73
3049 3722 3.233684 TGTATACCAACGCATCAACGA 57.766 42.857 0.00 0.00 36.70 3.85
3050 3723 4.504826 TGTATGTATACCAACGCATCAACG 59.495 41.667 0.00 0.00 34.13 4.10
3051 3724 5.977171 TGTATGTATACCAACGCATCAAC 57.023 39.130 0.00 0.00 32.33 3.18
3052 3725 6.540551 ACAATGTATGTATACCAACGCATCAA 59.459 34.615 0.00 0.00 41.63 2.57
3053 3726 6.052360 ACAATGTATGTATACCAACGCATCA 58.948 36.000 0.00 0.00 41.63 3.07
3054 3727 6.423905 AGACAATGTATGTATACCAACGCATC 59.576 38.462 0.00 0.00 44.12 3.91
3055 3728 6.202762 CAGACAATGTATGTATACCAACGCAT 59.797 38.462 0.00 0.00 44.12 4.73
3056 3729 5.522097 CAGACAATGTATGTATACCAACGCA 59.478 40.000 0.00 0.00 44.12 5.24
3058 3731 6.509517 GCACAGACAATGTATGTATACCAACG 60.510 42.308 13.59 0.25 44.12 4.10
3059 3732 6.315144 TGCACAGACAATGTATGTATACCAAC 59.685 38.462 13.59 0.00 44.12 3.77
3060 3733 6.410540 TGCACAGACAATGTATGTATACCAA 58.589 36.000 13.59 0.00 44.12 3.67
3062 3735 6.018751 CACTGCACAGACAATGTATGTATACC 60.019 42.308 13.59 3.80 44.12 2.73
3064 3737 6.756542 GTCACTGCACAGACAATGTATGTATA 59.243 38.462 13.59 5.02 44.12 1.47
3065 3738 5.582269 GTCACTGCACAGACAATGTATGTAT 59.418 40.000 13.59 0.00 44.12 2.29
3068 3741 3.999001 AGTCACTGCACAGACAATGTATG 59.001 43.478 6.45 6.45 41.41 2.39
3069 3742 4.248859 GAGTCACTGCACAGACAATGTAT 58.751 43.478 14.29 0.00 41.41 2.29
3070 3743 3.554960 GGAGTCACTGCACAGACAATGTA 60.555 47.826 14.29 0.00 41.41 2.29
3072 3745 1.802960 GGAGTCACTGCACAGACAATG 59.197 52.381 14.29 0.00 37.23 2.82
3092 3776 0.677288 TAGTGTCACTCCAACCCACG 59.323 55.000 9.26 0.00 0.00 4.94
3111 3795 0.771755 GGAGGGGTTCTGAACTTGGT 59.228 55.000 19.05 3.20 0.00 3.67
3112 3796 0.038310 GGGAGGGGTTCTGAACTTGG 59.962 60.000 19.05 0.00 0.00 3.61
3119 3803 4.785453 GCAGCGGGAGGGGTTCTG 62.785 72.222 0.00 0.00 0.00 3.02
3158 3842 1.422388 CCATGTCGCCATAGATCACG 58.578 55.000 0.00 0.00 0.00 4.35
3206 3890 5.392165 CGCTCCTACTACCTGAATATAGTGC 60.392 48.000 0.00 0.00 33.65 4.40
3222 3906 0.179137 GGCAATTTTGGCGCTCCTAC 60.179 55.000 7.64 0.00 43.97 3.18
3223 3907 2.188912 GGCAATTTTGGCGCTCCTA 58.811 52.632 7.64 0.00 43.97 2.94
3231 3915 3.651803 TTTACACCGAGGCAATTTTGG 57.348 42.857 0.00 0.00 0.00 3.28
3232 3916 3.738791 GGTTTTACACCGAGGCAATTTTG 59.261 43.478 0.00 0.00 35.12 2.44
3245 3929 7.148540 TGCATCACGTATAGAAAGGTTTTACAC 60.149 37.037 0.00 0.00 0.00 2.90
3247 3931 7.178074 GTGCATCACGTATAGAAAGGTTTTAC 58.822 38.462 0.00 0.00 0.00 2.01
3249 3933 5.123344 GGTGCATCACGTATAGAAAGGTTTT 59.877 40.000 0.00 0.00 34.83 2.43
3250 3934 4.634443 GGTGCATCACGTATAGAAAGGTTT 59.366 41.667 0.00 0.00 34.83 3.27
3251 3935 4.189231 GGTGCATCACGTATAGAAAGGTT 58.811 43.478 0.00 0.00 34.83 3.50
3254 4302 4.060038 AGGGTGCATCACGTATAGAAAG 57.940 45.455 0.00 0.00 34.83 2.62
3262 4310 1.899437 ATCCGAAGGGTGCATCACGT 61.899 55.000 0.00 0.00 44.06 4.49
3263 4311 1.153369 ATCCGAAGGGTGCATCACG 60.153 57.895 0.00 1.13 44.06 4.35
3283 4338 5.825532 TGGGTGTGATGAGATGGAAATTTA 58.174 37.500 0.00 0.00 0.00 1.40
3284 4339 4.676109 TGGGTGTGATGAGATGGAAATTT 58.324 39.130 0.00 0.00 0.00 1.82
3288 4343 2.845586 TCATGGGTGTGATGAGATGGAA 59.154 45.455 0.00 0.00 0.00 3.53
3289 4344 2.480390 TCATGGGTGTGATGAGATGGA 58.520 47.619 0.00 0.00 0.00 3.41
3297 4352 2.511659 GCTGCATATCATGGGTGTGAT 58.488 47.619 0.00 0.00 41.49 3.06
3300 4355 0.848735 AGGCTGCATATCATGGGTGT 59.151 50.000 0.50 0.00 0.00 4.16
3301 4356 1.244816 CAGGCTGCATATCATGGGTG 58.755 55.000 0.00 0.00 0.00 4.61
3302 4357 0.111832 CCAGGCTGCATATCATGGGT 59.888 55.000 9.56 0.00 0.00 4.51
3303 4358 0.402887 TCCAGGCTGCATATCATGGG 59.597 55.000 9.56 0.00 0.00 4.00
3305 4360 2.007608 CGATCCAGGCTGCATATCATG 58.992 52.381 9.56 0.00 0.00 3.07
3307 4362 1.341080 TCGATCCAGGCTGCATATCA 58.659 50.000 9.56 0.96 0.00 2.15
3311 4369 1.005275 CGATCGATCCAGGCTGCAT 60.005 57.895 19.51 0.00 0.00 3.96
3319 4377 1.437573 GGTCACAGCGATCGATCCA 59.562 57.895 21.57 0.00 0.00 3.41
3338 4396 2.543067 ATCTCTTTGGCCACCGCTCC 62.543 60.000 3.88 0.00 34.44 4.70
3339 4397 1.078143 ATCTCTTTGGCCACCGCTC 60.078 57.895 3.88 0.00 34.44 5.03
3343 4401 0.968405 TTTGCATCTCTTTGGCCACC 59.032 50.000 3.88 0.00 0.00 4.61
3346 4404 0.109132 CGGTTTGCATCTCTTTGGCC 60.109 55.000 0.00 0.00 0.00 5.36
3540 4598 2.026822 AGATCAATTGGCGGTGAAGAGT 60.027 45.455 5.42 0.00 0.00 3.24
3697 4788 1.900498 GCTTGTCCTTGCCAGCAGT 60.900 57.895 0.00 0.00 0.00 4.40
3724 4815 0.533755 ATGCTACCTTGCTCGATGGC 60.534 55.000 0.00 0.00 0.00 4.40
3738 4829 3.132824 ACATGACGATGAAGTGGATGCTA 59.867 43.478 0.00 0.00 33.36 3.49
3742 4833 2.501316 TGGACATGACGATGAAGTGGAT 59.499 45.455 0.00 0.00 33.36 3.41
3772 4863 2.182030 CGACTTCTCCGACCAGGC 59.818 66.667 0.00 0.00 40.77 4.85
3799 4890 5.129634 TGATGTCTGCTGGTAAAAAGAACA 58.870 37.500 0.00 0.00 0.00 3.18
3820 4911 2.377628 AAACAGGAAGGCGCGACTGA 62.378 55.000 19.28 0.00 35.08 3.41
3830 4921 3.549625 GCTGCAAAGTCTGAAACAGGAAG 60.550 47.826 0.00 0.00 31.51 3.46
3836 4927 3.427161 AACAGCTGCAAAGTCTGAAAC 57.573 42.857 15.27 0.00 0.00 2.78
3884 4977 6.003950 AGTTGTACTATTCACACAAGGCATT 58.996 36.000 0.00 0.00 33.10 3.56
3904 4997 5.244626 AGACAAATCCTTTTCCATCCAGTTG 59.755 40.000 0.00 0.00 0.00 3.16
3916 5009 4.154195 CGATCAACCGAAGACAAATCCTTT 59.846 41.667 0.00 0.00 0.00 3.11
3928 5021 2.418197 GGTTCTGGATCGATCAACCGAA 60.418 50.000 25.93 17.52 42.22 4.30
3934 5027 1.417517 CATGGGGTTCTGGATCGATCA 59.582 52.381 25.93 11.75 0.00 2.92
3949 5042 2.313317 CCAATGAAGATCACCCATGGG 58.687 52.381 30.23 30.23 42.03 4.00
4001 5094 2.687935 TCAACAAGGCAAGAACCAGAAC 59.312 45.455 0.00 0.00 0.00 3.01
4002 5095 2.687935 GTCAACAAGGCAAGAACCAGAA 59.312 45.455 0.00 0.00 0.00 3.02
4006 5123 1.002792 GACGTCAACAAGGCAAGAACC 60.003 52.381 11.55 0.00 0.00 3.62
4034 5151 1.538047 ATGCCAGGTGTTACTTGCAG 58.462 50.000 0.00 0.00 41.61 4.41
4035 5152 1.993956 AATGCCAGGTGTTACTTGCA 58.006 45.000 0.00 0.00 42.36 4.08
4036 5153 3.059166 CAAAATGCCAGGTGTTACTTGC 58.941 45.455 0.00 0.00 0.00 4.01
4037 5154 4.582701 TCAAAATGCCAGGTGTTACTTG 57.417 40.909 0.00 0.00 0.00 3.16
4038 5155 4.832266 TCATCAAAATGCCAGGTGTTACTT 59.168 37.500 0.00 0.00 32.58 2.24
4039 5156 4.218417 GTCATCAAAATGCCAGGTGTTACT 59.782 41.667 0.00 0.00 32.58 2.24
4157 5275 6.929606 GTGTGATCTTCTACTTACCTTGTTGT 59.070 38.462 0.00 0.00 0.00 3.32
4202 5325 3.190337 GCAAACAGCTTCTTGCCTG 57.810 52.632 15.70 0.00 41.69 4.85
4226 5349 6.014925 ACCAAATCCACCTGTTACCAAAATAC 60.015 38.462 0.00 0.00 0.00 1.89
4409 5532 3.131933 ACAATCAGAGAGAATCCGTCCAG 59.868 47.826 0.00 0.00 33.66 3.86
4417 5540 7.255590 GCTAGAGCTCTTACAATCAGAGAGAAT 60.256 40.741 23.84 0.00 40.39 2.40
4442 5565 9.980780 AAAACAAAACACACAAATACTTATTGC 57.019 25.926 0.00 0.00 0.00 3.56
4446 5569 9.706691 TTGGAAAACAAAACACACAAATACTTA 57.293 25.926 0.00 0.00 35.79 2.24
4447 5570 8.608844 TTGGAAAACAAAACACACAAATACTT 57.391 26.923 0.00 0.00 35.79 2.24
4461 5584 6.112058 AGTATTTGCTGCTTTGGAAAACAAA 58.888 32.000 0.00 0.00 46.34 2.83
4462 5585 5.669477 AGTATTTGCTGCTTTGGAAAACAA 58.331 33.333 0.00 0.00 37.28 2.83
4463 5586 5.275067 AGTATTTGCTGCTTTGGAAAACA 57.725 34.783 0.00 0.00 31.49 2.83
4464 5587 6.603237 AAAGTATTTGCTGCTTTGGAAAAC 57.397 33.333 0.00 0.00 38.23 2.43
4489 5612 9.784531 TGCAGGATTTTCACCAATTAAAAATTA 57.215 25.926 0.00 0.00 33.85 1.40
4491 5614 8.866970 ATGCAGGATTTTCACCAATTAAAAAT 57.133 26.923 0.00 0.00 35.79 1.82
4493 5616 9.213799 GTAATGCAGGATTTTCACCAATTAAAA 57.786 29.630 0.00 0.00 0.00 1.52
4494 5617 8.592809 AGTAATGCAGGATTTTCACCAATTAAA 58.407 29.630 0.00 0.00 0.00 1.52
4496 5619 7.716799 AGTAATGCAGGATTTTCACCAATTA 57.283 32.000 0.00 0.00 0.00 1.40
4498 5621 6.891908 AGTAGTAATGCAGGATTTTCACCAAT 59.108 34.615 0.00 0.00 0.00 3.16
4499 5622 6.150976 CAGTAGTAATGCAGGATTTTCACCAA 59.849 38.462 0.00 0.00 0.00 3.67
4501 5624 5.648092 ACAGTAGTAATGCAGGATTTTCACC 59.352 40.000 0.00 0.00 0.00 4.02
4503 5626 7.390823 TGTACAGTAGTAATGCAGGATTTTCA 58.609 34.615 0.00 0.00 30.67 2.69
4504 5627 7.843490 TGTACAGTAGTAATGCAGGATTTTC 57.157 36.000 0.00 0.00 30.67 2.29
4505 5628 8.046708 TCATGTACAGTAGTAATGCAGGATTTT 58.953 33.333 0.33 0.00 30.67 1.82
4506 5629 7.564793 TCATGTACAGTAGTAATGCAGGATTT 58.435 34.615 0.33 0.00 30.67 2.17
4511 5634 9.133627 GACATATCATGTACAGTAGTAATGCAG 57.866 37.037 0.33 0.00 45.03 4.41
4519 5642 7.800847 CAGAGAACGACATATCATGTACAGTAG 59.199 40.741 0.33 0.00 45.03 2.57
4523 5646 6.094881 TGTCAGAGAACGACATATCATGTACA 59.905 38.462 0.00 0.00 45.03 2.90
4524 5647 6.495706 TGTCAGAGAACGACATATCATGTAC 58.504 40.000 0.00 0.00 45.03 2.90
4525 5648 6.693315 TGTCAGAGAACGACATATCATGTA 57.307 37.500 0.00 0.00 45.03 2.29
4527 5650 5.233050 GGTTGTCAGAGAACGACATATCATG 59.767 44.000 4.43 0.00 42.69 3.07
4528 5651 5.127845 AGGTTGTCAGAGAACGACATATCAT 59.872 40.000 4.43 0.00 42.69 2.45
4529 5652 4.462834 AGGTTGTCAGAGAACGACATATCA 59.537 41.667 4.43 0.00 42.69 2.15
4530 5653 5.000012 AGGTTGTCAGAGAACGACATATC 58.000 43.478 4.43 0.00 42.69 1.63
4533 5656 3.181465 ACAAGGTTGTCAGAGAACGACAT 60.181 43.478 4.43 0.00 42.69 3.06
4553 5676 0.828762 ATTTGGGCAGCAGCAAGACA 60.829 50.000 2.65 0.00 44.61 3.41
4554 5677 1.176527 TATTTGGGCAGCAGCAAGAC 58.823 50.000 2.65 0.00 44.61 3.01
4556 5679 2.166870 TGAATATTTGGGCAGCAGCAAG 59.833 45.455 2.65 0.00 44.61 4.01
4563 5686 0.031178 GCGGCTGAATATTTGGGCAG 59.969 55.000 0.00 6.71 0.00 4.85
4564 5687 0.682532 TGCGGCTGAATATTTGGGCA 60.683 50.000 0.00 6.35 0.00 5.36
4566 5689 1.605710 CTCTGCGGCTGAATATTTGGG 59.394 52.381 10.81 0.00 0.00 4.12
4594 5717 6.773976 ACCAAACTCTGAAATTCTTGACAA 57.226 33.333 0.00 0.00 0.00 3.18
4599 5722 6.691508 GGCATAACCAAACTCTGAAATTCTT 58.308 36.000 0.00 0.00 38.86 2.52
4689 5812 2.107950 TCGTATGCAAAACTCCCCAG 57.892 50.000 0.00 0.00 0.00 4.45
4896 6025 9.419297 GTATTTACAGTACATCACAAGTGAGAA 57.581 33.333 8.99 0.00 43.61 2.87
4956 6085 3.128068 CCGTACACAGCTATACACTGACA 59.872 47.826 5.26 0.00 38.55 3.58
5013 6142 8.324567 GTCATAGCTTTAGAGAAAATCTTGACG 58.675 37.037 0.00 0.00 39.64 4.35
5150 6284 3.634448 CCCACTAGATCTAGACCTGTGTG 59.366 52.174 31.91 19.30 36.97 3.82
5161 6295 8.152023 AGTTTAAGAATCAACCCACTAGATCT 57.848 34.615 0.00 0.00 0.00 2.75
5233 6367 6.015940 CCAAAACCTCTAGACAGAAGCATTTT 60.016 38.462 0.00 0.00 0.00 1.82
5244 6378 5.938125 TCATTTACTGCCAAAACCTCTAGAC 59.062 40.000 0.00 0.00 0.00 2.59
5268 6402 6.886178 ATAGTAGACATAACCCAACCAACT 57.114 37.500 0.00 0.00 0.00 3.16
5301 6435 7.926018 GTGTCATTAATTCCAACCTGAAAAGTT 59.074 33.333 0.00 0.00 0.00 2.66
5314 6448 4.441792 GGGCCATTTGTGTCATTAATTCC 58.558 43.478 4.39 0.00 0.00 3.01
5347 6482 0.188342 TGCTTCAAGCCTTTTCCCCT 59.812 50.000 7.01 0.00 41.51 4.79
5383 6518 4.100808 AGCCACCAAATTAAACAGCAAAGA 59.899 37.500 0.00 0.00 0.00 2.52
5573 6709 8.477256 TCAAACCAGAAAGTTTCTCAAATCATT 58.523 29.630 15.35 2.18 37.87 2.57
5574 6710 8.010733 TCAAACCAGAAAGTTTCTCAAATCAT 57.989 30.769 15.35 0.00 37.87 2.45
5577 6713 8.066612 TCTTCAAACCAGAAAGTTTCTCAAAT 57.933 30.769 15.35 0.41 37.87 2.32
5738 6881 3.657727 TGGGTTGAAGATCTTCCCTTCTT 59.342 43.478 28.40 0.00 40.37 2.52
5840 6983 5.490139 CAGGAATACTGGCAATACAAGTG 57.510 43.478 0.00 0.00 43.70 3.16
6003 7147 3.309994 GGAACCCCCATACCACCAAATTA 60.310 47.826 0.00 0.00 34.14 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.