Multiple sequence alignment - TraesCS3B01G359700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G359700 chr3B 100.000 4231 0 0 1 4231 571793082 571797312 0.000000e+00 7814
1 TraesCS3B01G359700 chr3B 85.747 884 108 10 1 873 260318924 260318048 0.000000e+00 918
2 TraesCS3B01G359700 chr3A 91.336 2747 149 37 884 3592 574510913 574513608 0.000000e+00 3672
3 TraesCS3B01G359700 chr3A 86.246 887 105 12 2 873 716943754 716942870 0.000000e+00 946
4 TraesCS3B01G359700 chr3A 86.463 820 97 11 13 823 617548699 617549513 0.000000e+00 887
5 TraesCS3B01G359700 chr3A 79.775 445 34 25 3803 4231 574513597 574514001 5.390000e-69 272
6 TraesCS3B01G359700 chr3D 94.205 1743 76 13 884 2617 435699415 435701141 0.000000e+00 2636
7 TraesCS3B01G359700 chr3D 87.426 1527 118 40 2729 4231 435701213 435702689 0.000000e+00 1688
8 TraesCS3B01G359700 chr3D 87.041 872 100 12 12 873 320410666 320409798 0.000000e+00 972
9 TraesCS3B01G359700 chr3D 86.353 828 105 6 1 823 475140306 475141130 0.000000e+00 896
10 TraesCS3B01G359700 chr7D 87.964 889 85 12 1 873 45537918 45537036 0.000000e+00 1029
11 TraesCS3B01G359700 chr2D 87.458 885 96 12 1 873 455941068 455941949 0.000000e+00 1005
12 TraesCS3B01G359700 chr2B 86.780 885 101 14 1 873 536820237 536821117 0.000000e+00 972
13 TraesCS3B01G359700 chr2A 86.667 885 102 8 1 873 594992626 594991746 0.000000e+00 966
14 TraesCS3B01G359700 chr2A 83.483 890 101 24 1 873 565452733 565451873 0.000000e+00 787


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G359700 chr3B 571793082 571797312 4230 False 7814 7814 100.0000 1 4231 1 chr3B.!!$F1 4230
1 TraesCS3B01G359700 chr3B 260318048 260318924 876 True 918 918 85.7470 1 873 1 chr3B.!!$R1 872
2 TraesCS3B01G359700 chr3A 574510913 574514001 3088 False 1972 3672 85.5555 884 4231 2 chr3A.!!$F2 3347
3 TraesCS3B01G359700 chr3A 716942870 716943754 884 True 946 946 86.2460 2 873 1 chr3A.!!$R1 871
4 TraesCS3B01G359700 chr3A 617548699 617549513 814 False 887 887 86.4630 13 823 1 chr3A.!!$F1 810
5 TraesCS3B01G359700 chr3D 435699415 435702689 3274 False 2162 2636 90.8155 884 4231 2 chr3D.!!$F2 3347
6 TraesCS3B01G359700 chr3D 320409798 320410666 868 True 972 972 87.0410 12 873 1 chr3D.!!$R1 861
7 TraesCS3B01G359700 chr3D 475140306 475141130 824 False 896 896 86.3530 1 823 1 chr3D.!!$F1 822
8 TraesCS3B01G359700 chr7D 45537036 45537918 882 True 1029 1029 87.9640 1 873 1 chr7D.!!$R1 872
9 TraesCS3B01G359700 chr2D 455941068 455941949 881 False 1005 1005 87.4580 1 873 1 chr2D.!!$F1 872
10 TraesCS3B01G359700 chr2B 536820237 536821117 880 False 972 972 86.7800 1 873 1 chr2B.!!$F1 872
11 TraesCS3B01G359700 chr2A 594991746 594992626 880 True 966 966 86.6670 1 873 1 chr2A.!!$R2 872
12 TraesCS3B01G359700 chr2A 565451873 565452733 860 True 787 787 83.4830 1 873 1 chr2A.!!$R1 872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 540 0.034767 TCGACTACCATCACCGACCT 60.035 55.000 0.0 0.0 0.0 3.85 F
816 842 0.035439 GATTGTCACCGTCACCCCAT 60.035 55.000 0.0 0.0 0.0 4.00 F
1128 1171 0.327191 TACTCCCCATGTCCCTTCCC 60.327 60.000 0.0 0.0 0.0 3.97 F
1525 1568 1.202486 CCTCCGCACGCCTATTCTTTA 60.202 52.381 0.0 0.0 0.0 1.85 F
3019 3088 1.202604 TCGGGTCCTGTCAACTTTGTC 60.203 52.381 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 2420 1.022735 GCTCTAACGGATCTCGACCA 58.977 55.0 10.05 0.00 42.43 4.02 R
2706 2750 0.301687 GCGTGTGAATCGCCTGTATG 59.698 55.0 0.00 0.00 46.61 2.39 R
2755 2818 1.040646 TGACCACGAGGATATCCAGC 58.959 55.0 23.81 13.68 38.89 4.85 R
3180 3251 0.552848 AGTTCCATGATCCCGGCAAT 59.447 50.0 0.00 0.00 0.00 3.56 R
3942 4050 0.109272 ACGATACACGAGCACTGTGG 60.109 55.0 10.21 0.00 45.77 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.833287 ACCGCATCTAGGACATTGCT 59.167 50.000 0.00 0.00 32.97 3.91
46 47 2.549563 CCGCATCTAGGACATTGCTCAT 60.550 50.000 0.00 0.00 32.97 2.90
104 113 3.129287 CATGGTAGCAAGCCTAACAAAGG 59.871 47.826 0.00 0.00 46.30 3.11
125 135 6.686484 AGGTTGCCAGAGGAAAAATTTAAT 57.314 33.333 0.00 0.00 0.00 1.40
133 143 6.591448 CCAGAGGAAAAATTTAATCTTGGCAC 59.409 38.462 0.00 0.00 0.00 5.01
244 254 4.495844 GGTTCTGCCACTACGCAAAATATC 60.496 45.833 0.00 0.00 38.56 1.63
251 261 4.307432 CACTACGCAAAATATCCCGATCT 58.693 43.478 0.00 0.00 0.00 2.75
252 262 5.466819 CACTACGCAAAATATCCCGATCTA 58.533 41.667 0.00 0.00 0.00 1.98
253 263 5.924254 CACTACGCAAAATATCCCGATCTAA 59.076 40.000 0.00 0.00 0.00 2.10
254 264 5.924825 ACTACGCAAAATATCCCGATCTAAC 59.075 40.000 0.00 0.00 0.00 2.34
270 289 6.205784 CGATCTAACTGAGAATCTCCTGTTC 58.794 44.000 17.44 7.17 37.85 3.18
279 298 4.464008 AGAATCTCCTGTTCTTGCACAAA 58.536 39.130 0.00 0.00 32.17 2.83
310 329 6.697455 TGCTACGAAGTCTGACATATCAAATC 59.303 38.462 10.88 0.00 43.93 2.17
347 366 1.255882 AGGATTTGCGCCACATCAAA 58.744 45.000 4.18 0.00 36.72 2.69
348 367 1.067635 AGGATTTGCGCCACATCAAAC 60.068 47.619 4.18 0.00 35.34 2.93
456 476 2.043625 ACGAGCCGTGACCACTTTA 58.956 52.632 0.00 0.00 39.18 1.85
467 487 2.635915 TGACCACTTTACTGGTAGGTGG 59.364 50.000 21.39 21.39 45.15 4.61
474 494 3.850917 TTACTGGTAGGTGGGTTAGGA 57.149 47.619 0.00 0.00 0.00 2.94
494 514 5.723355 AGGAATCCATTCATCATCCCAAAT 58.277 37.500 0.61 0.00 38.53 2.32
520 540 0.034767 TCGACTACCATCACCGACCT 60.035 55.000 0.00 0.00 0.00 3.85
537 557 4.158764 CCGACCTTCCATATATGACCTCTC 59.841 50.000 14.54 2.64 0.00 3.20
541 562 7.472100 CGACCTTCCATATATGACCTCTCTTTT 60.472 40.741 14.54 0.00 0.00 2.27
542 563 8.107196 ACCTTCCATATATGACCTCTCTTTTT 57.893 34.615 14.54 0.00 0.00 1.94
543 564 9.225682 ACCTTCCATATATGACCTCTCTTTTTA 57.774 33.333 14.54 0.00 0.00 1.52
548 569 9.482627 CCATATATGACCTCTCTTTTTAGTGTC 57.517 37.037 14.54 0.00 0.00 3.67
551 572 2.994578 GACCTCTCTTTTTAGTGTCGGC 59.005 50.000 0.00 0.00 0.00 5.54
552 573 2.367567 ACCTCTCTTTTTAGTGTCGGCA 59.632 45.455 0.00 0.00 0.00 5.69
624 645 8.525316 AGTTGCATTCAAAATATCACAATCTGA 58.475 29.630 0.00 0.00 33.37 3.27
657 679 3.730662 GCTTTGAGAACACGAGCACAAAA 60.731 43.478 0.00 0.00 36.26 2.44
746 772 2.042433 TCCCGAAATCCATTCCACCTTT 59.958 45.455 0.00 0.00 34.34 3.11
792 818 2.101249 CCACACAAACCAGTGCATTCTT 59.899 45.455 0.00 0.00 43.23 2.52
816 842 0.035439 GATTGTCACCGTCACCCCAT 60.035 55.000 0.00 0.00 0.00 4.00
823 849 2.014128 CACCGTCACCCCATCAATAAC 58.986 52.381 0.00 0.00 0.00 1.89
825 851 1.295792 CGTCACCCCATCAATAACGG 58.704 55.000 0.00 0.00 0.00 4.44
875 910 9.465985 TTTTAGAATTTTGAAAACCGACATACC 57.534 29.630 0.00 0.00 0.00 2.73
876 911 6.894339 AGAATTTTGAAAACCGACATACCT 57.106 33.333 0.00 0.00 0.00 3.08
877 912 6.909909 AGAATTTTGAAAACCGACATACCTC 58.090 36.000 0.00 0.00 0.00 3.85
878 913 6.488683 AGAATTTTGAAAACCGACATACCTCA 59.511 34.615 0.00 0.00 0.00 3.86
879 914 6.642707 ATTTTGAAAACCGACATACCTCAA 57.357 33.333 0.00 0.00 0.00 3.02
880 915 6.642707 TTTTGAAAACCGACATACCTCAAT 57.357 33.333 0.00 0.00 0.00 2.57
881 916 6.642707 TTTGAAAACCGACATACCTCAATT 57.357 33.333 0.00 0.00 0.00 2.32
882 917 7.747155 TTTGAAAACCGACATACCTCAATTA 57.253 32.000 0.00 0.00 0.00 1.40
890 925 6.183360 ACCGACATACCTCAATTAAGTAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
892 927 7.148641 CGACATACCTCAATTAAGTAGCATCT 58.851 38.462 0.00 0.00 0.00 2.90
896 931 9.499479 CATACCTCAATTAAGTAGCATCTCATT 57.501 33.333 0.00 0.00 0.00 2.57
979 1014 2.165641 TGCTTCACTACGTGATCCGATT 59.834 45.455 0.00 0.00 42.40 3.34
993 1028 1.508088 CGATTCAGCCCAACTTGCC 59.492 57.895 0.00 0.00 0.00 4.52
995 1030 1.607801 GATTCAGCCCAACTTGCCCC 61.608 60.000 0.00 0.00 0.00 5.80
996 1031 4.659172 TCAGCCCAACTTGCCCCG 62.659 66.667 0.00 0.00 0.00 5.73
1003 1046 2.203294 AACTTGCCCCGACGCTTT 60.203 55.556 0.00 0.00 0.00 3.51
1128 1171 0.327191 TACTCCCCATGTCCCTTCCC 60.327 60.000 0.00 0.00 0.00 3.97
1134 1177 1.773635 CATGTCCCTTCCCCACCAA 59.226 57.895 0.00 0.00 0.00 3.67
1241 1284 2.041405 CCCTCCCTCAGACCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
1288 1331 2.041928 CCCTCAAGCCCCTCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
1395 1438 2.093447 CCTCCTGCGTTCCTATTCACTT 60.093 50.000 0.00 0.00 0.00 3.16
1525 1568 1.202486 CCTCCGCACGCCTATTCTTTA 60.202 52.381 0.00 0.00 0.00 1.85
1832 1875 2.851263 TATGCTTCCCGTGTCTTTGT 57.149 45.000 0.00 0.00 0.00 2.83
1845 1888 3.850098 CTTTGTGCGGGTGCCCTCT 62.850 63.158 5.64 0.00 41.78 3.69
1851 1894 2.444256 GCGGGTGCCCTCTAGGAAT 61.444 63.158 5.64 0.00 38.24 3.01
1974 2017 4.398358 CCAAATGAGATGACATTCACTGCT 59.602 41.667 0.00 0.00 39.19 4.24
2228 2271 4.895668 ATTTTGACATTGCAATGGAGGT 57.104 36.364 35.85 19.95 40.70 3.85
2235 2278 5.130975 TGACATTGCAATGGAGGTACTAGAT 59.869 40.000 35.85 15.75 40.70 1.98
2236 2279 5.371526 ACATTGCAATGGAGGTACTAGATG 58.628 41.667 35.85 13.72 40.70 2.90
2309 2352 2.988010 TCTGACCTGTATGTCATGGC 57.012 50.000 0.00 0.00 43.86 4.40
2370 2413 2.614057 GGAGGAACATAATGTGCGGAAG 59.386 50.000 0.00 0.00 0.00 3.46
2385 2428 1.472878 CGGAAGAACAGATGGTCGAGA 59.527 52.381 0.00 0.00 36.72 4.04
2389 2432 1.678627 AGAACAGATGGTCGAGATCCG 59.321 52.381 0.00 0.00 36.72 4.18
2393 2436 2.619177 ACAGATGGTCGAGATCCGTTAG 59.381 50.000 0.00 0.00 39.75 2.34
2394 2437 2.879026 CAGATGGTCGAGATCCGTTAGA 59.121 50.000 0.00 0.00 39.75 2.10
2420 2463 1.962807 CAAACCACCTGGCTTGATTGA 59.037 47.619 1.76 0.00 42.34 2.57
2442 2485 3.668447 TCCTGCAGTCAGTTGATCTTTC 58.332 45.455 13.81 0.00 38.66 2.62
2443 2486 3.071457 TCCTGCAGTCAGTTGATCTTTCA 59.929 43.478 13.81 0.00 38.66 2.69
2446 2489 4.392047 TGCAGTCAGTTGATCTTTCACAT 58.608 39.130 0.00 0.00 0.00 3.21
2447 2490 4.823442 TGCAGTCAGTTGATCTTTCACATT 59.177 37.500 0.00 0.00 0.00 2.71
2456 2499 6.974622 AGTTGATCTTTCACATTGTTCAACAC 59.025 34.615 22.29 6.60 42.27 3.32
2466 2509 3.502191 TTGTTCAACACCTGCAAAGTC 57.498 42.857 0.00 0.00 0.00 3.01
2480 2524 5.221224 CCTGCAAAGTCTTGGTTGAATTGTA 60.221 40.000 0.00 0.00 32.76 2.41
2484 2528 6.438763 CAAAGTCTTGGTTGAATTGTAGGAC 58.561 40.000 0.00 0.00 0.00 3.85
2491 2535 6.045072 TGGTTGAATTGTAGGACGATACTT 57.955 37.500 0.00 0.00 0.00 2.24
2596 2640 6.638468 GGAATCAGCGGAATGAATACAAATTC 59.362 38.462 0.00 0.00 41.69 2.17
2598 2642 5.192927 TCAGCGGAATGAATACAAATTCCT 58.807 37.500 11.52 0.00 46.52 3.36
2638 2682 8.570096 CAATATTGCATTGAGGTAAATCAGTG 57.430 34.615 1.74 0.00 39.27 3.66
2645 2689 6.623486 CATTGAGGTAAATCAGTGCAAATCA 58.377 36.000 0.00 0.00 31.35 2.57
2646 2690 6.839124 TTGAGGTAAATCAGTGCAAATCAT 57.161 33.333 0.00 0.00 0.00 2.45
2647 2691 6.441093 TGAGGTAAATCAGTGCAAATCATC 57.559 37.500 0.00 0.00 0.00 2.92
2648 2692 5.065090 TGAGGTAAATCAGTGCAAATCATCG 59.935 40.000 0.00 0.00 0.00 3.84
2649 2693 4.037690 GGTAAATCAGTGCAAATCATCGC 58.962 43.478 0.00 0.00 0.00 4.58
2650 2694 4.201950 GGTAAATCAGTGCAAATCATCGCT 60.202 41.667 0.00 0.00 0.00 4.93
2651 2695 5.007626 GGTAAATCAGTGCAAATCATCGCTA 59.992 40.000 0.00 0.00 0.00 4.26
2652 2696 5.762825 AAATCAGTGCAAATCATCGCTAT 57.237 34.783 0.00 0.00 0.00 2.97
2653 2697 5.762825 AATCAGTGCAAATCATCGCTATT 57.237 34.783 0.00 0.00 0.00 1.73
2654 2698 5.762825 ATCAGTGCAAATCATCGCTATTT 57.237 34.783 0.00 0.00 0.00 1.40
2655 2699 4.912214 TCAGTGCAAATCATCGCTATTTG 58.088 39.130 10.67 10.67 43.87 2.32
2656 2700 4.039703 CAGTGCAAATCATCGCTATTTGG 58.960 43.478 14.58 0.75 42.17 3.28
2657 2701 3.947196 AGTGCAAATCATCGCTATTTGGA 59.053 39.130 14.58 10.96 42.17 3.53
2658 2702 4.581824 AGTGCAAATCATCGCTATTTGGAT 59.418 37.500 14.58 0.00 43.52 3.41
2659 2703 5.068198 AGTGCAAATCATCGCTATTTGGATT 59.932 36.000 14.58 8.75 43.52 3.01
2660 2704 5.750067 GTGCAAATCATCGCTATTTGGATTT 59.250 36.000 14.58 0.00 43.52 2.17
2661 2705 6.917477 GTGCAAATCATCGCTATTTGGATTTA 59.083 34.615 14.58 0.00 43.52 1.40
2662 2706 7.113965 GTGCAAATCATCGCTATTTGGATTTAG 59.886 37.037 14.58 0.00 43.52 1.85
2663 2707 7.141363 GCAAATCATCGCTATTTGGATTTAGT 58.859 34.615 14.58 0.00 42.17 2.24
2664 2708 7.324616 GCAAATCATCGCTATTTGGATTTAGTC 59.675 37.037 14.58 0.00 42.17 2.59
2665 2709 8.562892 CAAATCATCGCTATTTGGATTTAGTCT 58.437 33.333 0.00 0.00 39.55 3.24
2666 2710 7.897575 ATCATCGCTATTTGGATTTAGTCTC 57.102 36.000 0.00 0.00 0.00 3.36
2701 2745 9.967346 TTATGAGTTGAGATATTAGAAGAACCG 57.033 33.333 0.00 0.00 0.00 4.44
2702 2746 7.640597 TGAGTTGAGATATTAGAAGAACCGA 57.359 36.000 0.00 0.00 0.00 4.69
2703 2747 8.063200 TGAGTTGAGATATTAGAAGAACCGAA 57.937 34.615 0.00 0.00 0.00 4.30
2704 2748 7.974501 TGAGTTGAGATATTAGAAGAACCGAAC 59.025 37.037 0.00 0.00 0.00 3.95
2705 2749 8.068892 AGTTGAGATATTAGAAGAACCGAACT 57.931 34.615 0.00 0.00 0.00 3.01
2706 2750 8.192110 AGTTGAGATATTAGAAGAACCGAACTC 58.808 37.037 0.00 0.00 0.00 3.01
2707 2751 7.640597 TGAGATATTAGAAGAACCGAACTCA 57.359 36.000 0.00 0.00 0.00 3.41
2748 2811 5.741425 CATATGTGTTATGAGCAAACCGAG 58.259 41.667 0.00 0.00 40.22 4.63
2788 2851 2.603110 CGTGGTCATGTACTGATTTCCG 59.397 50.000 0.00 0.00 35.97 4.30
2789 2852 2.351726 GTGGTCATGTACTGATTTCCGC 59.648 50.000 0.00 0.00 35.97 5.54
2790 2853 2.236146 TGGTCATGTACTGATTTCCGCT 59.764 45.455 0.00 0.00 35.97 5.52
2867 2933 2.355108 CCATTTCGGCCTTTCAGAGAGA 60.355 50.000 0.00 0.00 0.00 3.10
2970 3036 1.955778 TGTTGCTAACAATGTGCAGCT 59.044 42.857 17.46 0.00 38.72 4.24
2982 3048 2.135139 TGTGCAGCTCTAAGTGTTTCG 58.865 47.619 0.00 0.00 0.00 3.46
3019 3088 1.202604 TCGGGTCCTGTCAACTTTGTC 60.203 52.381 0.00 0.00 0.00 3.18
3105 3176 1.948104 CTGGTTCGTCCTGTCACAAA 58.052 50.000 1.80 0.00 37.07 2.83
3117 3188 6.036735 CGTCCTGTCACAAACTCTTTTAAAGA 59.963 38.462 7.22 7.22 35.87 2.52
3159 3230 7.425606 AGAAACTGTGCTGTAATGTAAAAAGG 58.574 34.615 0.00 0.00 0.00 3.11
3177 3248 9.358872 GTAAAAAGGCCTTCTATTCAAAAGATG 57.641 33.333 20.79 0.00 0.00 2.90
3180 3251 9.479549 AAAAGGCCTTCTATTCAAAAGATGATA 57.520 29.630 20.79 0.00 38.03 2.15
3185 3256 7.811713 GCCTTCTATTCAAAAGATGATATTGCC 59.188 37.037 0.00 0.00 38.03 4.52
3220 3296 8.355913 GGAACTGATTTCTGTGAAAAAGAAGAT 58.644 33.333 10.82 0.00 42.14 2.40
3234 3310 9.558396 TGAAAAAGAAGATAATGTTTTGCCATT 57.442 25.926 0.00 0.00 38.54 3.16
3265 3348 0.248012 TGATTGCCATTGCCTTGCTG 59.752 50.000 0.00 0.00 36.33 4.41
3279 3365 6.358118 TGCCTTGCTGTAGTATTTAATTCG 57.642 37.500 0.00 0.00 0.00 3.34
3286 3372 5.728351 TGTAGTATTTAATTCGCCTGCAC 57.272 39.130 0.00 0.00 0.00 4.57
3347 3433 7.451255 TCTGAACCATTTGAATGTTTACCTCAT 59.549 33.333 3.30 0.00 34.60 2.90
3348 3434 8.642935 TGAACCATTTGAATGTTTACCTCATA 57.357 30.769 3.30 0.00 34.60 2.15
3349 3435 8.519526 TGAACCATTTGAATGTTTACCTCATAC 58.480 33.333 3.30 0.00 34.60 2.39
3441 3528 0.034059 AGCGGGACAGTTGACAAGAG 59.966 55.000 0.00 0.00 0.00 2.85
3457 3544 0.244178 AGAGCCGACGGAAGACTTTC 59.756 55.000 20.50 0.00 0.00 2.62
3493 3580 8.110860 ACACTTTTAATCTTGATGTTACCAGG 57.889 34.615 0.00 0.00 0.00 4.45
3494 3581 7.724061 ACACTTTTAATCTTGATGTTACCAGGT 59.276 33.333 0.00 0.00 0.00 4.00
3533 3623 7.202001 CCAACATCACCAGAAGGATATACTGTA 60.202 40.741 0.00 0.00 38.69 2.74
3535 3625 6.267928 ACATCACCAGAAGGATATACTGTACC 59.732 42.308 0.00 0.00 38.69 3.34
3579 3672 1.102978 ATCAGGGCAATTTGTACCGC 58.897 50.000 0.00 0.00 0.00 5.68
3693 3786 2.021722 CCATAACGGTGGCCATTCG 58.978 57.895 23.84 23.84 31.43 3.34
3865 3970 1.824045 GCTATAGCTTCCTCCTCCCGT 60.824 57.143 17.75 0.00 38.21 5.28
3941 4049 0.613260 TTCATTCTCGTCCCCACAGG 59.387 55.000 0.00 0.00 0.00 4.00
3942 4050 1.450312 CATTCTCGTCCCCACAGGC 60.450 63.158 0.00 0.00 34.51 4.85
3944 4052 4.631740 TCTCGTCCCCACAGGCCA 62.632 66.667 5.01 0.00 34.51 5.36
3947 4055 4.704833 CGTCCCCACAGGCCACAG 62.705 72.222 5.01 0.00 34.51 3.66
3948 4056 3.570212 GTCCCCACAGGCCACAGT 61.570 66.667 5.01 0.00 34.51 3.55
4020 4129 1.942712 CGCCATAGTACGTCGCCAC 60.943 63.158 0.00 0.00 0.00 5.01
4034 4143 1.502163 CGCCACTATAAGCTGCAGGC 61.502 60.000 17.12 6.81 42.19 4.85
4050 4159 2.383527 GGCTTCTTCGTCCGTGCAG 61.384 63.158 0.00 0.00 0.00 4.41
4114 4234 4.055227 GGGGGCGGTTCCATTCCA 62.055 66.667 0.00 0.00 36.21 3.53
4118 4238 2.361104 GCGGTTCCATTCCAGGCA 60.361 61.111 0.00 0.00 0.00 4.75
4149 4269 3.353836 CTTCCCGGCGTGTTGGTG 61.354 66.667 6.01 0.00 0.00 4.17
4154 4274 2.590575 CGGCGTGTTGGTGTCCTT 60.591 61.111 0.00 0.00 0.00 3.36
4157 4277 0.034337 GGCGTGTTGGTGTCCTTCTA 59.966 55.000 0.00 0.00 0.00 2.10
4166 4286 2.972713 TGGTGTCCTTCTAGTGCTTCTT 59.027 45.455 0.00 0.00 0.00 2.52
4169 4289 2.972713 TGTCCTTCTAGTGCTTCTTGGT 59.027 45.455 0.00 0.00 0.00 3.67
4178 4298 2.394563 GCTTCTTGGTCTCTGCGCC 61.395 63.158 4.18 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.109393 GGCTAACAGACATATAAAAGTCAATGA 57.891 33.333 0.00 0.00 37.23 2.57
46 47 8.856153 TTGGCTAACAGACATATAAAAGTCAA 57.144 30.769 0.00 0.00 30.15 3.18
104 113 7.118245 CCAAGATTAAATTTTTCCTCTGGCAAC 59.882 37.037 0.00 0.00 0.00 4.17
125 135 1.871039 GCTTAAGTTGTCGTGCCAAGA 59.129 47.619 4.02 0.00 0.00 3.02
133 143 2.854777 CGATCTGGAGCTTAAGTTGTCG 59.145 50.000 4.02 2.03 0.00 4.35
182 192 4.993705 TCAGGAGAAAATACAGTTGGGT 57.006 40.909 0.00 0.00 0.00 4.51
225 235 2.290641 GGGATATTTTGCGTAGTGGCAG 59.709 50.000 0.00 0.00 44.94 4.85
233 243 4.750098 CAGTTAGATCGGGATATTTTGCGT 59.250 41.667 0.00 0.00 0.00 5.24
244 254 4.022416 CAGGAGATTCTCAGTTAGATCGGG 60.022 50.000 15.36 0.00 33.05 5.14
251 261 5.012046 TGCAAGAACAGGAGATTCTCAGTTA 59.988 40.000 18.13 5.60 35.31 2.24
252 262 4.202398 TGCAAGAACAGGAGATTCTCAGTT 60.202 41.667 18.14 18.14 35.31 3.16
253 263 3.326006 TGCAAGAACAGGAGATTCTCAGT 59.674 43.478 15.36 10.04 35.31 3.41
254 264 3.683822 GTGCAAGAACAGGAGATTCTCAG 59.316 47.826 15.36 9.44 35.31 3.35
270 289 3.119884 TCGTAGCATGGAATTTGTGCAAG 60.120 43.478 11.54 4.56 41.19 4.01
279 298 3.195610 TGTCAGACTTCGTAGCATGGAAT 59.804 43.478 1.31 0.00 0.00 3.01
310 329 2.257286 CTTGCGATTCCGTTGCCTGG 62.257 60.000 0.00 0.00 36.30 4.45
333 352 1.007502 GCAGTTTGATGTGGCGCAA 60.008 52.632 10.83 0.00 0.00 4.85
347 366 3.319122 GGTTTCTCAAACATTCTGGCAGT 59.681 43.478 15.27 0.00 43.15 4.40
348 367 3.318839 TGGTTTCTCAAACATTCTGGCAG 59.681 43.478 8.58 8.58 43.15 4.85
420 440 3.426615 TCGTGGAGGCAATTTACCATTT 58.573 40.909 0.00 0.00 34.87 2.32
421 441 3.016736 CTCGTGGAGGCAATTTACCATT 58.983 45.455 0.00 0.00 34.87 3.16
424 444 0.733150 GCTCGTGGAGGCAATTTACC 59.267 55.000 0.00 0.00 0.00 2.85
449 469 1.982958 ACCCACCTACCAGTAAAGTGG 59.017 52.381 15.21 15.21 46.14 4.00
456 476 2.727429 TTCCTAACCCACCTACCAGT 57.273 50.000 0.00 0.00 0.00 4.00
467 487 5.012893 GGGATGATGAATGGATTCCTAACC 58.987 45.833 3.95 0.00 35.97 2.85
474 494 8.730093 TCAATATTTGGGATGATGAATGGATT 57.270 30.769 0.00 0.00 0.00 3.01
494 514 4.581409 TCGGTGATGGTAGTCGAATCAATA 59.419 41.667 0.00 0.00 32.38 1.90
537 557 0.879090 GGGGTGCCGACACTAAAAAG 59.121 55.000 0.81 0.00 46.57 2.27
541 562 2.601067 TCGGGGTGCCGACACTAA 60.601 61.111 0.81 0.00 46.57 2.24
548 569 2.178912 ATTATTATGTCGGGGTGCCG 57.821 50.000 0.00 0.00 0.00 5.69
551 572 3.634448 TGGCAAATTATTATGTCGGGGTG 59.366 43.478 0.00 0.00 0.00 4.61
552 573 3.904717 TGGCAAATTATTATGTCGGGGT 58.095 40.909 0.00 0.00 0.00 4.95
566 587 2.973694 GCCTCATTCACATGGCAAAT 57.026 45.000 0.00 0.00 44.34 2.32
624 645 8.050778 TCGTGTTCTCAAAGCCAAATATTATT 57.949 30.769 0.00 0.00 0.00 1.40
687 710 2.364972 AGCCCTACTTGCAAAACAGT 57.635 45.000 0.00 0.00 0.00 3.55
746 772 5.702670 TGAAAATTGTGTGTGCCAAAGAAAA 59.297 32.000 0.00 0.00 0.00 2.29
792 818 1.272490 GGTGACGGTGACAATCAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
816 842 2.883574 GACACGATGTCCCGTTATTGA 58.116 47.619 6.82 0.00 41.37 2.57
825 851 5.408604 ACAGATTTGTAAAGACACGATGTCC 59.591 40.000 12.53 1.66 41.10 4.02
873 908 7.568349 TCAATGAGATGCTACTTAATTGAGGT 58.432 34.615 1.95 0.00 33.06 3.85
874 909 8.504815 CATCAATGAGATGCTACTTAATTGAGG 58.495 37.037 17.66 15.70 46.90 3.86
896 931 9.449719 GGGTTCTTTTACTAAGAAGAATCATCA 57.550 33.333 10.25 0.00 42.20 3.07
903 938 9.284968 CTTTCATGGGTTCTTTTACTAAGAAGA 57.715 33.333 0.49 0.00 36.99 2.87
904 939 9.284968 TCTTTCATGGGTTCTTTTACTAAGAAG 57.715 33.333 0.49 0.00 36.99 2.85
906 941 9.807921 ATTCTTTCATGGGTTCTTTTACTAAGA 57.192 29.630 0.00 0.00 0.00 2.10
908 943 8.726988 CGATTCTTTCATGGGTTCTTTTACTAA 58.273 33.333 0.00 0.00 0.00 2.24
909 944 8.098286 TCGATTCTTTCATGGGTTCTTTTACTA 58.902 33.333 0.00 0.00 0.00 1.82
910 945 6.940298 TCGATTCTTTCATGGGTTCTTTTACT 59.060 34.615 0.00 0.00 0.00 2.24
911 946 7.141100 TCGATTCTTTCATGGGTTCTTTTAC 57.859 36.000 0.00 0.00 0.00 2.01
919 954 2.636830 CTGCTCGATTCTTTCATGGGT 58.363 47.619 0.00 0.00 0.00 4.51
979 1014 4.659172 CGGGGCAAGTTGGGCTGA 62.659 66.667 4.75 0.00 0.00 4.26
993 1028 3.788766 CTTCGGCAAAGCGTCGGG 61.789 66.667 0.00 0.00 0.00 5.14
1103 1146 1.345715 GGACATGGGGAGTAGGGGTG 61.346 65.000 0.00 0.00 0.00 4.61
1227 1270 2.637640 GGAGGAGGGGTCTGAGGGA 61.638 68.421 0.00 0.00 0.00 4.20
1265 1308 4.803908 GGGGCTTGAGGGCGAAGG 62.804 72.222 0.00 0.00 41.87 3.46
1525 1568 1.189524 TCCTTGTCGGGGATGTCGTT 61.190 55.000 0.00 0.00 0.00 3.85
1845 1888 2.840038 AGTCCAGTGCATCACATTCCTA 59.160 45.455 0.00 0.00 36.74 2.94
1851 1894 4.384599 GCAGTCCAGTGCATCACA 57.615 55.556 1.28 0.00 43.41 3.58
1974 2017 1.079197 CCCGCATACACTGAGCACA 60.079 57.895 0.00 0.00 0.00 4.57
2228 2271 7.290014 TCTCCATTGCCAATACTTCATCTAGTA 59.710 37.037 0.00 0.00 35.25 1.82
2235 2278 6.938596 CAGATATCTCCATTGCCAATACTTCA 59.061 38.462 1.03 0.00 0.00 3.02
2236 2279 7.164122 TCAGATATCTCCATTGCCAATACTTC 58.836 38.462 1.03 0.00 0.00 3.01
2309 2352 2.203252 CATCATCCCACCGCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
2370 2413 1.405821 ACGGATCTCGACCATCTGTTC 59.594 52.381 10.05 0.00 36.62 3.18
2377 2420 1.022735 GCTCTAACGGATCTCGACCA 58.977 55.000 10.05 0.00 42.43 4.02
2389 2432 1.583495 GGTGGTTTGCCCGCTCTAAC 61.583 60.000 0.00 0.00 43.71 2.34
2393 2436 3.365265 CAGGTGGTTTGCCCGCTC 61.365 66.667 0.00 0.00 43.71 5.03
2394 2437 4.974721 CCAGGTGGTTTGCCCGCT 62.975 66.667 0.00 0.00 43.71 5.52
2420 2463 3.996921 AAGATCAACTGACTGCAGGAT 57.003 42.857 19.93 9.64 46.60 3.24
2442 2485 2.867287 TGCAGGTGTTGAACAATGTG 57.133 45.000 0.00 0.00 0.00 3.21
2443 2486 3.195396 ACTTTGCAGGTGTTGAACAATGT 59.805 39.130 0.00 0.00 0.00 2.71
2446 2489 3.088532 AGACTTTGCAGGTGTTGAACAA 58.911 40.909 0.00 0.00 0.00 2.83
2447 2490 2.722094 AGACTTTGCAGGTGTTGAACA 58.278 42.857 0.00 0.00 0.00 3.18
2456 2499 4.053295 CAATTCAACCAAGACTTTGCAGG 58.947 43.478 0.00 0.00 32.79 4.85
2466 2509 6.106673 AGTATCGTCCTACAATTCAACCAAG 58.893 40.000 0.00 0.00 0.00 3.61
2497 2541 6.210584 TGAATACATCTGTGGTGAGTCTAACA 59.789 38.462 0.00 0.00 0.00 2.41
2506 2550 1.935873 CCGCTGAATACATCTGTGGTG 59.064 52.381 6.73 0.00 46.78 4.17
2507 2551 2.315925 CCGCTGAATACATCTGTGGT 57.684 50.000 6.73 0.00 46.78 4.16
2534 2578 6.198650 CTGGATTTCATCAAGCAACATGTA 57.801 37.500 0.00 0.00 0.00 2.29
2596 2640 3.853355 ATTGCAGGAGAATAGACCAGG 57.147 47.619 0.00 0.00 0.00 4.45
2621 2665 6.623486 TGATTTGCACTGATTTACCTCAATG 58.377 36.000 0.00 0.00 0.00 2.82
2622 2666 6.839124 TGATTTGCACTGATTTACCTCAAT 57.161 33.333 0.00 0.00 0.00 2.57
2632 2676 5.506815 CCAAATAGCGATGATTTGCACTGAT 60.507 40.000 10.10 0.00 41.13 2.90
2635 2679 3.947196 TCCAAATAGCGATGATTTGCACT 59.053 39.130 10.10 0.00 41.13 4.40
2636 2680 4.291540 TCCAAATAGCGATGATTTGCAC 57.708 40.909 10.10 0.00 41.13 4.57
2638 2682 7.141363 ACTAAATCCAAATAGCGATGATTTGC 58.859 34.615 11.42 0.00 41.13 3.68
2639 2683 8.562892 AGACTAAATCCAAATAGCGATGATTTG 58.437 33.333 11.42 10.00 41.80 2.32
2640 2684 8.682936 AGACTAAATCCAAATAGCGATGATTT 57.317 30.769 8.11 8.11 38.68 2.17
2641 2685 7.933577 TGAGACTAAATCCAAATAGCGATGATT 59.066 33.333 0.00 0.00 0.00 2.57
2642 2686 7.445121 TGAGACTAAATCCAAATAGCGATGAT 58.555 34.615 0.00 0.00 0.00 2.45
2643 2687 6.816136 TGAGACTAAATCCAAATAGCGATGA 58.184 36.000 0.00 0.00 0.00 2.92
2644 2688 7.664082 ATGAGACTAAATCCAAATAGCGATG 57.336 36.000 0.00 0.00 0.00 3.84
2645 2689 7.173907 CCAATGAGACTAAATCCAAATAGCGAT 59.826 37.037 0.00 0.00 0.00 4.58
2646 2690 6.483307 CCAATGAGACTAAATCCAAATAGCGA 59.517 38.462 0.00 0.00 0.00 4.93
2647 2691 6.293626 CCCAATGAGACTAAATCCAAATAGCG 60.294 42.308 0.00 0.00 0.00 4.26
2648 2692 6.015940 CCCCAATGAGACTAAATCCAAATAGC 60.016 42.308 0.00 0.00 0.00 2.97
2649 2693 7.290061 TCCCCAATGAGACTAAATCCAAATAG 58.710 38.462 0.00 0.00 0.00 1.73
2650 2694 7.219601 TCCCCAATGAGACTAAATCCAAATA 57.780 36.000 0.00 0.00 0.00 1.40
2651 2695 6.091076 TCCCCAATGAGACTAAATCCAAAT 57.909 37.500 0.00 0.00 0.00 2.32
2652 2696 5.528600 TCCCCAATGAGACTAAATCCAAA 57.471 39.130 0.00 0.00 0.00 3.28
2653 2697 5.732331 ATCCCCAATGAGACTAAATCCAA 57.268 39.130 0.00 0.00 0.00 3.53
2654 2698 5.732331 AATCCCCAATGAGACTAAATCCA 57.268 39.130 0.00 0.00 0.00 3.41
2655 2699 7.461749 TCATAATCCCCAATGAGACTAAATCC 58.538 38.462 0.00 0.00 0.00 3.01
2665 2709 5.974156 TCTCAACTCATAATCCCCAATGA 57.026 39.130 0.00 0.00 0.00 2.57
2666 2710 8.874744 AATATCTCAACTCATAATCCCCAATG 57.125 34.615 0.00 0.00 0.00 2.82
2699 2743 2.128035 GAATCGCCTGTATGAGTTCGG 58.872 52.381 0.00 0.00 0.00 4.30
2700 2744 2.535984 GTGAATCGCCTGTATGAGTTCG 59.464 50.000 0.00 0.00 0.00 3.95
2701 2745 3.307242 GTGTGAATCGCCTGTATGAGTTC 59.693 47.826 0.00 0.00 0.00 3.01
2702 2746 3.262420 GTGTGAATCGCCTGTATGAGTT 58.738 45.455 0.00 0.00 0.00 3.01
2703 2747 2.735444 CGTGTGAATCGCCTGTATGAGT 60.735 50.000 0.00 0.00 0.00 3.41
2704 2748 1.854743 CGTGTGAATCGCCTGTATGAG 59.145 52.381 0.00 0.00 0.00 2.90
2705 2749 1.921243 CGTGTGAATCGCCTGTATGA 58.079 50.000 0.00 0.00 0.00 2.15
2706 2750 0.301687 GCGTGTGAATCGCCTGTATG 59.698 55.000 0.00 0.00 46.61 2.39
2707 2751 2.677971 GCGTGTGAATCGCCTGTAT 58.322 52.632 0.00 0.00 46.61 2.29
2755 2818 1.040646 TGACCACGAGGATATCCAGC 58.959 55.000 23.81 13.68 38.89 4.85
2788 2851 2.099756 GTCCTATGGGCACAATGAAAGC 59.900 50.000 0.00 0.00 0.00 3.51
2789 2852 3.379372 CAGTCCTATGGGCACAATGAAAG 59.621 47.826 0.00 0.00 0.00 2.62
2790 2853 3.355378 CAGTCCTATGGGCACAATGAAA 58.645 45.455 0.00 0.00 0.00 2.69
2867 2933 3.440173 CCATTGTTAGTCTGCATTCGGTT 59.560 43.478 0.00 0.00 0.00 4.44
2907 2973 9.869844 CTAGTATAGAATCAAATGGCTTTTTCG 57.130 33.333 0.00 0.00 42.77 3.46
2982 3048 6.766467 AGGACCCGATGTTGTAGAATTTATTC 59.234 38.462 0.00 0.00 37.06 1.75
3019 3088 2.749076 TGGGCAAAAGAACAGATGATCG 59.251 45.455 0.00 0.00 0.00 3.69
3105 3176 8.974060 TGGAATACAACAGTCTTTAAAAGAGT 57.026 30.769 0.00 0.00 41.81 3.24
3148 3219 9.710900 CTTTTGAATAGAAGGCCTTTTTACATT 57.289 29.630 21.54 10.75 0.00 2.71
3159 3230 7.811713 GGCAATATCATCTTTTGAATAGAAGGC 59.188 37.037 0.00 0.00 38.03 4.35
3177 3248 2.749621 GTTCCATGATCCCGGCAATATC 59.250 50.000 0.00 0.00 0.00 1.63
3180 3251 0.552848 AGTTCCATGATCCCGGCAAT 59.447 50.000 0.00 0.00 0.00 3.56
3185 3256 3.562973 CAGAAATCAGTTCCATGATCCCG 59.437 47.826 0.00 0.00 39.00 5.14
3220 3296 5.254901 AGTACGGGTAATGGCAAAACATTA 58.745 37.500 0.00 0.00 41.12 1.90
3234 3310 2.181125 TGGCAATCAGAAGTACGGGTA 58.819 47.619 0.00 0.00 0.00 3.69
3235 3311 0.981183 TGGCAATCAGAAGTACGGGT 59.019 50.000 0.00 0.00 0.00 5.28
3265 3348 5.728351 TGTGCAGGCGAATTAAATACTAC 57.272 39.130 0.00 0.00 0.00 2.73
3279 3365 1.378531 TTAATCACCGATGTGCAGGC 58.621 50.000 0.00 0.00 42.46 4.85
3286 3372 6.347402 CCCGTAAAGCTAATTAATCACCGATG 60.347 42.308 0.00 0.00 0.00 3.84
3347 3433 8.793592 CAAGCCATATCTATGTGTGTACTAGTA 58.206 37.037 0.00 0.00 31.82 1.82
3348 3434 7.661968 CAAGCCATATCTATGTGTGTACTAGT 58.338 38.462 0.00 0.00 31.82 2.57
3349 3435 6.587990 GCAAGCCATATCTATGTGTGTACTAG 59.412 42.308 0.00 0.00 31.82 2.57
3441 3528 1.615107 CGTGAAAGTCTTCCGTCGGC 61.615 60.000 6.34 0.00 0.00 5.54
3457 3544 3.684103 TTAAAAGTGTCACTTGGCGTG 57.316 42.857 18.84 0.00 45.18 5.34
3493 3580 1.398692 TGTTGGGAACTTTCAGGCAC 58.601 50.000 0.00 0.00 0.00 5.01
3494 3581 2.238521 GATGTTGGGAACTTTCAGGCA 58.761 47.619 0.00 0.00 0.00 4.75
3533 3623 1.066143 CAAGATACTTCGGCCAGTGGT 60.066 52.381 11.74 0.00 0.00 4.16
3535 3625 1.207089 TCCAAGATACTTCGGCCAGTG 59.793 52.381 2.24 0.00 0.00 3.66
3676 3769 2.021722 CCGAATGGCCACCGTTATG 58.978 57.895 22.79 8.29 32.23 1.90
3689 3782 2.436646 CTGTCGCTTGGGCCGAAT 60.437 61.111 0.00 0.00 34.44 3.34
3865 3970 3.755628 CCCCGAAAGCGACCGAGA 61.756 66.667 0.00 0.00 40.82 4.04
3925 4033 2.670148 GGCCTGTGGGGACGAGAAT 61.670 63.158 0.00 0.00 37.23 2.40
3941 4049 1.413767 CGATACACGAGCACTGTGGC 61.414 60.000 10.21 2.10 45.77 5.01
3942 4050 0.109272 ACGATACACGAGCACTGTGG 60.109 55.000 10.21 0.00 45.77 4.17
3944 4052 1.668919 CCAACGATACACGAGCACTGT 60.669 52.381 0.00 0.00 45.77 3.55
3946 4054 0.601558 ACCAACGATACACGAGCACT 59.398 50.000 0.00 0.00 45.77 4.40
3947 4055 0.713883 CACCAACGATACACGAGCAC 59.286 55.000 0.00 0.00 45.77 4.40
3948 4056 0.315886 ACACCAACGATACACGAGCA 59.684 50.000 0.00 0.00 45.77 4.26
3993 4102 2.504274 TACTATGGCGGCGGGGAAG 61.504 63.158 9.78 0.00 0.00 3.46
4000 4109 3.028590 GCGACGTACTATGGCGGC 61.029 66.667 0.00 0.00 0.00 6.53
4034 4143 1.070577 CAAACTGCACGGACGAAGAAG 60.071 52.381 0.00 0.00 0.00 2.85
4035 4144 0.934496 CAAACTGCACGGACGAAGAA 59.066 50.000 0.00 0.00 0.00 2.52
4036 4145 1.495584 GCAAACTGCACGGACGAAGA 61.496 55.000 0.00 0.00 44.26 2.87
4114 4234 1.678970 GGAGCGAAACCCATTGCCT 60.679 57.895 0.00 0.00 0.00 4.75
4118 4238 0.323451 GGGAAGGAGCGAAACCCATT 60.323 55.000 0.00 0.00 40.20 3.16
4144 4264 2.972713 AGAAGCACTAGAAGGACACCAA 59.027 45.455 0.00 0.00 0.00 3.67
4149 4269 3.259625 AGACCAAGAAGCACTAGAAGGAC 59.740 47.826 0.00 0.00 0.00 3.85
4154 4274 2.232452 GCAGAGACCAAGAAGCACTAGA 59.768 50.000 0.00 0.00 0.00 2.43
4157 4277 0.320247 CGCAGAGACCAAGAAGCACT 60.320 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.