Multiple sequence alignment - TraesCS3B01G359300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G359300 chr3B 100.000 3143 0 0 1 3143 571750111 571746969 0.000000e+00 5805.0
1 TraesCS3B01G359300 chr2B 96.244 1624 40 6 826 2446 76909798 76908193 0.000000e+00 2641.0
2 TraesCS3B01G359300 chr2B 91.839 1642 91 13 829 2459 83565217 83563608 0.000000e+00 2250.0
3 TraesCS3B01G359300 chr2B 83.745 1378 172 29 934 2282 678556939 678555585 0.000000e+00 1256.0
4 TraesCS3B01G359300 chr2B 82.167 1357 188 35 1122 2449 749290101 749288770 0.000000e+00 1116.0
5 TraesCS3B01G359300 chr2B 82.013 467 64 10 2000 2449 91778862 91779325 2.290000e-101 379.0
6 TraesCS3B01G359300 chr2A 93.108 1538 81 6 918 2446 52100015 52101536 0.000000e+00 2230.0
7 TraesCS3B01G359300 chr1A 83.544 1580 208 25 892 2445 497782097 497780544 0.000000e+00 1430.0
8 TraesCS3B01G359300 chr6A 83.396 1584 206 34 892 2446 169894846 169893291 0.000000e+00 1415.0
9 TraesCS3B01G359300 chr6A 77.944 535 89 17 27 546 536796220 536796740 1.090000e-79 307.0
10 TraesCS3B01G359300 chr6A 77.944 535 89 17 27 546 536799805 536800325 1.090000e-79 307.0
11 TraesCS3B01G359300 chr6B 82.910 1574 210 32 899 2443 192737037 192735494 0.000000e+00 1362.0
12 TraesCS3B01G359300 chr6B 77.666 497 96 9 27 511 584003829 584003336 3.970000e-74 289.0
13 TraesCS3B01G359300 chr6B 92.000 175 11 3 2273 2445 713259959 713260132 3.130000e-60 243.0
14 TraesCS3B01G359300 chr7B 82.210 1321 197 18 979 2279 517117871 517116569 0.000000e+00 1103.0
15 TraesCS3B01G359300 chr5B 88.367 894 83 9 1340 2231 638780041 638780915 0.000000e+00 1055.0
16 TraesCS3B01G359300 chr5B 78.723 423 77 9 147 560 599299004 599298586 1.440000e-68 270.0
17 TraesCS3B01G359300 chr5B 79.372 223 37 3 84 297 489819389 489819611 7.020000e-32 148.0
18 TraesCS3B01G359300 chr1B 91.093 494 15 12 1972 2456 67679649 67680122 2.640000e-180 641.0
19 TraesCS3B01G359300 chr1B 76.954 755 134 27 836 1578 653223099 653223825 8.170000e-106 394.0
20 TraesCS3B01G359300 chr3D 83.289 748 63 26 2446 3143 435644887 435644152 1.590000e-177 632.0
21 TraesCS3B01G359300 chr3D 85.778 225 10 12 615 835 435645082 435644876 5.280000e-53 219.0
22 TraesCS3B01G359300 chr6D 80.072 557 86 14 6 548 445913052 445913597 1.060000e-104 390.0
23 TraesCS3B01G359300 chr3A 80.880 523 74 16 1941 2445 648530909 648531423 3.800000e-104 388.0
24 TraesCS3B01G359300 chr3A 81.713 432 67 6 1 421 574450590 574450160 1.790000e-92 350.0
25 TraesCS3B01G359300 chr2D 81.076 502 76 13 73 560 356719912 356720408 1.770000e-102 383.0
26 TraesCS3B01G359300 chr2D 79.501 561 87 15 6 546 636433599 636433047 1.060000e-99 374.0
27 TraesCS3B01G359300 chr1D 79.255 188 35 2 11 194 3762092 3761905 9.150000e-26 128.0
28 TraesCS3B01G359300 chr5A 94.000 50 3 0 1379 1428 40472736 40472785 3.360000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G359300 chr3B 571746969 571750111 3142 True 5805.0 5805 100.0000 1 3143 1 chr3B.!!$R1 3142
1 TraesCS3B01G359300 chr2B 76908193 76909798 1605 True 2641.0 2641 96.2440 826 2446 1 chr2B.!!$R1 1620
2 TraesCS3B01G359300 chr2B 83563608 83565217 1609 True 2250.0 2250 91.8390 829 2459 1 chr2B.!!$R2 1630
3 TraesCS3B01G359300 chr2B 678555585 678556939 1354 True 1256.0 1256 83.7450 934 2282 1 chr2B.!!$R3 1348
4 TraesCS3B01G359300 chr2B 749288770 749290101 1331 True 1116.0 1116 82.1670 1122 2449 1 chr2B.!!$R4 1327
5 TraesCS3B01G359300 chr2A 52100015 52101536 1521 False 2230.0 2230 93.1080 918 2446 1 chr2A.!!$F1 1528
6 TraesCS3B01G359300 chr1A 497780544 497782097 1553 True 1430.0 1430 83.5440 892 2445 1 chr1A.!!$R1 1553
7 TraesCS3B01G359300 chr6A 169893291 169894846 1555 True 1415.0 1415 83.3960 892 2446 1 chr6A.!!$R1 1554
8 TraesCS3B01G359300 chr6A 536796220 536800325 4105 False 307.0 307 77.9440 27 546 2 chr6A.!!$F1 519
9 TraesCS3B01G359300 chr6B 192735494 192737037 1543 True 1362.0 1362 82.9100 899 2443 1 chr6B.!!$R1 1544
10 TraesCS3B01G359300 chr7B 517116569 517117871 1302 True 1103.0 1103 82.2100 979 2279 1 chr7B.!!$R1 1300
11 TraesCS3B01G359300 chr5B 638780041 638780915 874 False 1055.0 1055 88.3670 1340 2231 1 chr5B.!!$F2 891
12 TraesCS3B01G359300 chr1B 653223099 653223825 726 False 394.0 394 76.9540 836 1578 1 chr1B.!!$F2 742
13 TraesCS3B01G359300 chr3D 435644152 435645082 930 True 425.5 632 84.5335 615 3143 2 chr3D.!!$R1 2528
14 TraesCS3B01G359300 chr6D 445913052 445913597 545 False 390.0 390 80.0720 6 548 1 chr6D.!!$F1 542
15 TraesCS3B01G359300 chr3A 648530909 648531423 514 False 388.0 388 80.8800 1941 2445 1 chr3A.!!$F1 504
16 TraesCS3B01G359300 chr2D 636433047 636433599 552 True 374.0 374 79.5010 6 546 1 chr2D.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 615 0.032952 TCGTCGGGTTTGGACTTCAG 59.967 55.0 0.0 0.0 32.24 3.02 F
607 621 0.110486 GGTTTGGACTTCAGGGAGCA 59.890 55.0 0.0 0.0 0.00 4.26 F
1929 4811 0.314935 TTGTGGACGACGTAGGTTCC 59.685 55.0 0.0 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 4811 0.320421 AGTTGGTGACCGGAACATCG 60.320 55.000 9.46 0.00 0.0 3.84 R
2025 4915 2.032377 CGCCTCTAAACGTTTGAGCAAA 60.032 45.455 23.46 1.09 0.0 3.68 R
2963 5921 0.340208 GGGAGAGAAAGGGGAGAGGA 59.660 60.000 0.00 0.00 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.571119 CACCGGAGCAAGCTGAAG 58.429 61.111 9.46 0.00 0.00 3.02
18 19 2.037136 CACCGGAGCAAGCTGAAGG 61.037 63.158 9.46 2.43 0.00 3.46
19 20 3.130160 CCGGAGCAAGCTGAAGGC 61.130 66.667 0.00 0.00 42.19 4.35
20 21 2.359107 CGGAGCAAGCTGAAGGCA 60.359 61.111 0.00 0.00 44.79 4.75
21 22 2.684843 CGGAGCAAGCTGAAGGCAC 61.685 63.158 0.00 0.00 44.79 5.01
22 23 1.601759 GGAGCAAGCTGAAGGCACA 60.602 57.895 0.00 0.00 44.79 4.57
23 24 1.584380 GGAGCAAGCTGAAGGCACAG 61.584 60.000 0.00 7.23 44.79 3.66
35 36 1.746615 GGCACAGCACCATCATCGT 60.747 57.895 0.00 0.00 0.00 3.73
40 41 0.107508 CAGCACCATCATCGTCCCTT 60.108 55.000 0.00 0.00 0.00 3.95
46 47 2.707791 ACCATCATCGTCCCTTCATCAT 59.292 45.455 0.00 0.00 0.00 2.45
47 48 3.137176 ACCATCATCGTCCCTTCATCATT 59.863 43.478 0.00 0.00 0.00 2.57
48 49 4.347876 ACCATCATCGTCCCTTCATCATTA 59.652 41.667 0.00 0.00 0.00 1.90
51 52 5.459536 TCATCGTCCCTTCATCATTAGAG 57.540 43.478 0.00 0.00 0.00 2.43
53 54 2.365617 TCGTCCCTTCATCATTAGAGCC 59.634 50.000 0.00 0.00 0.00 4.70
56 57 3.389329 GTCCCTTCATCATTAGAGCCAGA 59.611 47.826 0.00 0.00 0.00 3.86
58 59 3.495806 CCCTTCATCATTAGAGCCAGACC 60.496 52.174 0.00 0.00 0.00 3.85
65 66 2.859165 TTAGAGCCAGACCAACCTTG 57.141 50.000 0.00 0.00 0.00 3.61
74 75 5.249852 AGCCAGACCAACCTTGTTATAGTAA 59.750 40.000 0.00 0.00 0.00 2.24
82 83 6.869913 CCAACCTTGTTATAGTAAACAGTCGA 59.130 38.462 0.00 0.00 40.29 4.20
83 84 7.385752 CCAACCTTGTTATAGTAAACAGTCGAA 59.614 37.037 0.00 0.00 40.29 3.71
88 90 7.786305 TGTTATAGTAAACAGTCGAAAGTCG 57.214 36.000 0.00 0.00 36.47 4.18
90 92 7.862372 TGTTATAGTAAACAGTCGAAAGTCGTT 59.138 33.333 0.00 0.00 36.50 3.85
99 101 2.793232 GTCGAAAGTCGTTGTGCTAAGT 59.207 45.455 0.00 0.00 41.35 2.24
100 102 3.047796 TCGAAAGTCGTTGTGCTAAGTC 58.952 45.455 0.00 0.00 41.35 3.01
101 103 3.050619 CGAAAGTCGTTGTGCTAAGTCT 58.949 45.455 0.00 0.00 34.72 3.24
103 105 2.333389 AGTCGTTGTGCTAAGTCTCG 57.667 50.000 0.00 0.00 0.00 4.04
105 107 2.095668 AGTCGTTGTGCTAAGTCTCGAG 60.096 50.000 5.93 5.93 0.00 4.04
112 114 1.004394 TGCTAAGTCTCGAGAGGACCA 59.996 52.381 17.22 6.98 33.54 4.02
116 118 3.134792 TCTCGAGAGGACCAGCGC 61.135 66.667 12.08 0.00 0.00 5.92
126 128 4.927782 ACCAGCGCGCCAGAACAA 62.928 61.111 30.33 0.00 0.00 2.83
133 138 4.389576 CGCCAGAACAACAGCCGC 62.390 66.667 0.00 0.00 0.00 6.53
179 184 6.045955 GGAAGGATCTAATCTGAAGACACAC 58.954 44.000 0.00 0.00 0.00 3.82
186 191 1.835121 TCTGAAGACACACGAACACG 58.165 50.000 0.00 0.00 0.00 4.49
231 241 1.359459 GATCCAGACAAACGCCGACC 61.359 60.000 0.00 0.00 0.00 4.79
237 247 1.286354 GACAAACGCCGACCGAATCA 61.286 55.000 0.00 0.00 41.02 2.57
238 248 0.672401 ACAAACGCCGACCGAATCAT 60.672 50.000 0.00 0.00 41.02 2.45
244 254 1.766143 GCCGACCGAATCATGTGAGC 61.766 60.000 0.00 0.00 0.00 4.26
255 265 3.758755 TCATGTGAGCTCTGTTGAAGT 57.241 42.857 16.19 0.00 0.00 3.01
268 278 4.816385 TCTGTTGAAGTCAAATCTCCACAC 59.184 41.667 0.00 0.00 37.63 3.82
278 288 0.689080 ATCTCCACACGCCCTCTGAT 60.689 55.000 0.00 0.00 0.00 2.90
286 296 1.123077 ACGCCCTCTGATGATGCTAA 58.877 50.000 0.00 0.00 0.00 3.09
302 312 0.511221 CTAAACGCACCACCAGAACG 59.489 55.000 0.00 0.00 0.00 3.95
303 313 0.881159 TAAACGCACCACCAGAACGG 60.881 55.000 0.00 0.00 42.50 4.44
307 317 3.953775 CACCACCAGAACGGGGCT 61.954 66.667 0.00 0.00 36.51 5.19
313 323 1.153628 CCAGAACGGGGCTTAGACG 60.154 63.158 0.00 0.00 0.00 4.18
315 325 1.304713 AGAACGGGGCTTAGACGGA 60.305 57.895 0.00 0.00 0.00 4.69
316 326 0.901580 AGAACGGGGCTTAGACGGAA 60.902 55.000 0.00 0.00 0.00 4.30
318 328 0.397564 AACGGGGCTTAGACGGAAAA 59.602 50.000 0.00 0.00 0.00 2.29
343 353 8.607441 AAACCTTATTTCAAATTCAAAGAGCC 57.393 30.769 0.00 0.00 0.00 4.70
344 354 7.301868 ACCTTATTTCAAATTCAAAGAGCCA 57.698 32.000 0.00 0.00 0.00 4.75
345 355 7.154656 ACCTTATTTCAAATTCAAAGAGCCAC 58.845 34.615 0.00 0.00 0.00 5.01
346 356 6.591448 CCTTATTTCAAATTCAAAGAGCCACC 59.409 38.462 0.00 0.00 0.00 4.61
347 357 4.335400 TTTCAAATTCAAAGAGCCACCC 57.665 40.909 0.00 0.00 0.00 4.61
348 358 2.247358 TCAAATTCAAAGAGCCACCCC 58.753 47.619 0.00 0.00 0.00 4.95
349 359 1.276138 CAAATTCAAAGAGCCACCCCC 59.724 52.381 0.00 0.00 0.00 5.40
350 360 0.611896 AATTCAAAGAGCCACCCCCG 60.612 55.000 0.00 0.00 0.00 5.73
351 361 3.860930 TTCAAAGAGCCACCCCCGC 62.861 63.158 0.00 0.00 0.00 6.13
352 362 4.659172 CAAAGAGCCACCCCCGCA 62.659 66.667 0.00 0.00 0.00 5.69
366 376 1.202651 CCCCGCATCGTCTTCCTAAAT 60.203 52.381 0.00 0.00 0.00 1.40
368 378 3.493699 CCCCGCATCGTCTTCCTAAATAA 60.494 47.826 0.00 0.00 0.00 1.40
369 379 4.124238 CCCGCATCGTCTTCCTAAATAAA 58.876 43.478 0.00 0.00 0.00 1.40
377 387 9.840427 CATCGTCTTCCTAAATAAAACACAAAT 57.160 29.630 0.00 0.00 0.00 2.32
426 437 0.603975 GATGTATGAGCCCTTCCGCC 60.604 60.000 0.00 0.00 0.00 6.13
446 458 1.817099 GCAAGGCCGAGATCCACTG 60.817 63.158 0.00 0.00 0.00 3.66
448 460 2.293318 AAGGCCGAGATCCACTGCA 61.293 57.895 0.00 0.00 0.00 4.41
450 462 2.581354 GCCGAGATCCACTGCACT 59.419 61.111 0.00 0.00 0.00 4.40
452 464 1.086634 GCCGAGATCCACTGCACTTC 61.087 60.000 0.00 0.00 0.00 3.01
453 465 0.534412 CCGAGATCCACTGCACTTCT 59.466 55.000 0.00 0.00 0.00 2.85
457 469 3.129871 GAGATCCACTGCACTTCTATGC 58.870 50.000 0.00 0.00 46.32 3.14
458 470 2.158842 AGATCCACTGCACTTCTATGCC 60.159 50.000 0.00 0.00 45.50 4.40
459 471 1.279496 TCCACTGCACTTCTATGCCT 58.721 50.000 0.00 0.00 45.50 4.75
460 472 2.466846 TCCACTGCACTTCTATGCCTA 58.533 47.619 0.00 0.00 45.50 3.93
462 474 2.939103 CCACTGCACTTCTATGCCTAAC 59.061 50.000 0.00 0.00 45.50 2.34
463 475 3.599343 CACTGCACTTCTATGCCTAACA 58.401 45.455 0.00 0.00 45.50 2.41
464 476 3.372206 CACTGCACTTCTATGCCTAACAC 59.628 47.826 0.00 0.00 45.50 3.32
466 478 2.304470 TGCACTTCTATGCCTAACACCA 59.696 45.455 0.00 0.00 45.50 4.17
467 479 2.678336 GCACTTCTATGCCTAACACCAC 59.322 50.000 0.00 0.00 39.86 4.16
468 480 2.930040 CACTTCTATGCCTAACACCACG 59.070 50.000 0.00 0.00 0.00 4.94
469 481 2.093658 ACTTCTATGCCTAACACCACGG 60.094 50.000 0.00 0.00 0.00 4.94
470 482 1.855295 TCTATGCCTAACACCACGGA 58.145 50.000 0.00 0.00 0.00 4.69
516 530 4.760047 CGGGAGGCGTGGTTCCTG 62.760 72.222 0.00 0.00 33.24 3.86
518 532 2.670148 GGGAGGCGTGGTTCCTGAT 61.670 63.158 0.00 0.00 33.24 2.90
520 534 1.519455 GAGGCGTGGTTCCTGATCG 60.519 63.158 0.00 0.00 33.24 3.69
527 541 2.586357 GTTCCTGATCGCCCTCGC 60.586 66.667 0.00 0.00 35.26 5.03
558 572 4.918201 GCGAAGGCCAGGGGATCG 62.918 72.222 5.01 6.12 36.64 3.69
560 574 2.506472 GAAGGCCAGGGGATCGTC 59.494 66.667 5.01 0.00 0.00 4.20
561 575 2.041265 AAGGCCAGGGGATCGTCT 59.959 61.111 5.01 0.00 0.00 4.18
564 578 2.801631 GGCCAGGGGATCGTCTCTG 61.802 68.421 0.00 0.00 0.00 3.35
566 580 0.755698 GCCAGGGGATCGTCTCTGTA 60.756 60.000 0.00 0.00 0.00 2.74
567 581 1.033574 CCAGGGGATCGTCTCTGTAC 58.966 60.000 0.00 0.00 0.00 2.90
568 582 1.410365 CCAGGGGATCGTCTCTGTACT 60.410 57.143 0.00 0.00 0.00 2.73
569 583 2.158652 CCAGGGGATCGTCTCTGTACTA 60.159 54.545 0.00 0.00 0.00 1.82
570 584 3.498841 CCAGGGGATCGTCTCTGTACTAT 60.499 52.174 0.00 0.00 0.00 2.12
571 585 3.504134 CAGGGGATCGTCTCTGTACTATG 59.496 52.174 0.00 0.00 0.00 2.23
572 586 3.394940 AGGGGATCGTCTCTGTACTATGA 59.605 47.826 0.00 0.00 0.00 2.15
573 587 3.502979 GGGGATCGTCTCTGTACTATGAC 59.497 52.174 0.00 0.00 0.00 3.06
576 590 5.409214 GGGATCGTCTCTGTACTATGACTAC 59.591 48.000 0.00 0.00 0.00 2.73
577 591 6.225318 GGATCGTCTCTGTACTATGACTACT 58.775 44.000 0.00 0.00 0.00 2.57
578 592 6.366877 GGATCGTCTCTGTACTATGACTACTC 59.633 46.154 0.00 0.00 0.00 2.59
579 593 6.468333 TCGTCTCTGTACTATGACTACTCT 57.532 41.667 0.00 0.00 0.00 3.24
580 594 6.876155 TCGTCTCTGTACTATGACTACTCTT 58.124 40.000 0.00 0.00 0.00 2.85
581 595 7.329499 TCGTCTCTGTACTATGACTACTCTTT 58.671 38.462 0.00 0.00 0.00 2.52
583 597 8.117988 CGTCTCTGTACTATGACTACTCTTTTC 58.882 40.741 0.00 0.00 0.00 2.29
584 598 8.117988 GTCTCTGTACTATGACTACTCTTTTCG 58.882 40.741 0.00 0.00 0.00 3.46
585 599 7.823310 TCTCTGTACTATGACTACTCTTTTCGT 59.177 37.037 0.00 0.00 0.00 3.85
586 600 7.972527 TCTGTACTATGACTACTCTTTTCGTC 58.027 38.462 0.00 0.00 0.00 4.20
588 602 5.232610 ACTATGACTACTCTTTTCGTCGG 57.767 43.478 0.00 0.00 0.00 4.79
589 603 3.505464 ATGACTACTCTTTTCGTCGGG 57.495 47.619 0.00 0.00 0.00 5.14
590 604 2.233271 TGACTACTCTTTTCGTCGGGT 58.767 47.619 0.00 0.00 0.00 5.28
591 605 2.624838 TGACTACTCTTTTCGTCGGGTT 59.375 45.455 0.00 0.00 0.00 4.11
592 606 3.068590 TGACTACTCTTTTCGTCGGGTTT 59.931 43.478 0.00 0.00 0.00 3.27
593 607 3.387397 ACTACTCTTTTCGTCGGGTTTG 58.613 45.455 0.00 0.00 0.00 2.93
598 612 1.944709 CTTTTCGTCGGGTTTGGACTT 59.055 47.619 0.00 0.00 32.24 3.01
599 613 1.585297 TTTCGTCGGGTTTGGACTTC 58.415 50.000 0.00 0.00 32.24 3.01
601 615 0.032952 TCGTCGGGTTTGGACTTCAG 59.967 55.000 0.00 0.00 32.24 3.02
604 618 0.765135 TCGGGTTTGGACTTCAGGGA 60.765 55.000 0.00 0.00 0.00 4.20
606 620 0.609406 GGGTTTGGACTTCAGGGAGC 60.609 60.000 0.00 0.00 0.00 4.70
607 621 0.110486 GGTTTGGACTTCAGGGAGCA 59.890 55.000 0.00 0.00 0.00 4.26
609 623 1.882623 GTTTGGACTTCAGGGAGCAAG 59.117 52.381 0.00 0.00 0.00 4.01
610 624 1.140312 TTGGACTTCAGGGAGCAAGT 58.860 50.000 0.00 0.00 35.48 3.16
612 626 2.334977 TGGACTTCAGGGAGCAAGTTA 58.665 47.619 0.00 0.00 32.83 2.24
613 627 2.708861 TGGACTTCAGGGAGCAAGTTAA 59.291 45.455 0.00 0.00 32.83 2.01
667 721 7.585579 TCTACTAGTCGATACAAGAGAGAGA 57.414 40.000 0.00 0.00 0.00 3.10
668 722 8.009622 TCTACTAGTCGATACAAGAGAGAGAA 57.990 38.462 0.00 0.00 0.00 2.87
669 723 8.476447 TCTACTAGTCGATACAAGAGAGAGAAA 58.524 37.037 0.00 0.00 0.00 2.52
670 724 7.925043 ACTAGTCGATACAAGAGAGAGAAAA 57.075 36.000 0.00 0.00 0.00 2.29
672 726 7.825270 ACTAGTCGATACAAGAGAGAGAAAAGA 59.175 37.037 0.00 0.00 0.00 2.52
673 727 7.455641 AGTCGATACAAGAGAGAGAAAAGAA 57.544 36.000 0.00 0.00 0.00 2.52
676 730 8.024285 GTCGATACAAGAGAGAGAAAAGAAAGA 58.976 37.037 0.00 0.00 0.00 2.52
678 732 9.197694 CGATACAAGAGAGAGAAAAGAAAGAAA 57.802 33.333 0.00 0.00 0.00 2.52
682 736 9.454859 ACAAGAGAGAGAAAAGAAAGAAAGAAA 57.545 29.630 0.00 0.00 0.00 2.52
683 737 9.934190 CAAGAGAGAGAAAAGAAAGAAAGAAAG 57.066 33.333 0.00 0.00 0.00 2.62
684 738 9.898152 AAGAGAGAGAAAAGAAAGAAAGAAAGA 57.102 29.630 0.00 0.00 0.00 2.52
695 749 9.561270 AAGAAAGAAAGAAAGAAAGAAAGAACG 57.439 29.630 0.00 0.00 0.00 3.95
696 750 8.947115 AGAAAGAAAGAAAGAAAGAAAGAACGA 58.053 29.630 0.00 0.00 0.00 3.85
697 751 9.216087 GAAAGAAAGAAAGAAAGAAAGAACGAG 57.784 33.333 0.00 0.00 0.00 4.18
698 752 8.494016 AAGAAAGAAAGAAAGAAAGAACGAGA 57.506 30.769 0.00 0.00 0.00 4.04
699 753 8.494016 AGAAAGAAAGAAAGAAAGAACGAGAA 57.506 30.769 0.00 0.00 0.00 2.87
700 754 8.947115 AGAAAGAAAGAAAGAAAGAACGAGAAA 58.053 29.630 0.00 0.00 0.00 2.52
701 755 9.556030 GAAAGAAAGAAAGAAAGAACGAGAAAA 57.444 29.630 0.00 0.00 0.00 2.29
702 756 9.908152 AAAGAAAGAAAGAAAGAACGAGAAAAA 57.092 25.926 0.00 0.00 0.00 1.94
730 784 2.022764 TGGCACATGTACATCGAAGG 57.977 50.000 5.07 0.00 0.00 3.46
731 785 1.277842 TGGCACATGTACATCGAAGGT 59.722 47.619 5.07 0.00 0.00 3.50
732 786 1.933853 GGCACATGTACATCGAAGGTC 59.066 52.381 5.07 0.00 0.00 3.85
733 787 2.616960 GCACATGTACATCGAAGGTCA 58.383 47.619 5.07 0.00 0.00 4.02
734 788 3.198068 GCACATGTACATCGAAGGTCAT 58.802 45.455 5.07 0.00 0.00 3.06
735 789 3.623060 GCACATGTACATCGAAGGTCATT 59.377 43.478 5.07 0.00 0.00 2.57
736 790 4.094887 GCACATGTACATCGAAGGTCATTT 59.905 41.667 5.07 0.00 0.00 2.32
737 791 5.391950 GCACATGTACATCGAAGGTCATTTT 60.392 40.000 5.07 0.00 0.00 1.82
738 792 6.250819 CACATGTACATCGAAGGTCATTTTC 58.749 40.000 5.07 0.00 0.00 2.29
739 793 5.937540 ACATGTACATCGAAGGTCATTTTCA 59.062 36.000 5.07 0.00 0.00 2.69
740 794 6.429692 ACATGTACATCGAAGGTCATTTTCAA 59.570 34.615 5.07 0.00 0.00 2.69
741 795 6.869315 TGTACATCGAAGGTCATTTTCAAA 57.131 33.333 0.00 0.00 0.00 2.69
742 796 6.664515 TGTACATCGAAGGTCATTTTCAAAC 58.335 36.000 0.00 0.00 0.00 2.93
743 797 6.485313 TGTACATCGAAGGTCATTTTCAAACT 59.515 34.615 0.00 0.00 0.00 2.66
744 798 6.391227 ACATCGAAGGTCATTTTCAAACTT 57.609 33.333 0.00 0.00 0.00 2.66
745 799 6.805713 ACATCGAAGGTCATTTTCAAACTTT 58.194 32.000 0.00 0.00 0.00 2.66
746 800 7.264947 ACATCGAAGGTCATTTTCAAACTTTT 58.735 30.769 0.00 0.00 0.00 2.27
747 801 7.763985 ACATCGAAGGTCATTTTCAAACTTTTT 59.236 29.630 0.00 0.00 0.00 1.94
748 802 7.749539 TCGAAGGTCATTTTCAAACTTTTTC 57.250 32.000 0.00 0.00 0.00 2.29
749 803 6.754675 TCGAAGGTCATTTTCAAACTTTTTCC 59.245 34.615 0.00 0.00 0.00 3.13
750 804 6.756542 CGAAGGTCATTTTCAAACTTTTTCCT 59.243 34.615 0.00 0.00 0.00 3.36
751 805 7.918562 CGAAGGTCATTTTCAAACTTTTTCCTA 59.081 33.333 0.00 0.00 0.00 2.94
752 806 9.249457 GAAGGTCATTTTCAAACTTTTTCCTAG 57.751 33.333 0.00 0.00 0.00 3.02
753 807 7.210174 AGGTCATTTTCAAACTTTTTCCTAGC 58.790 34.615 0.00 0.00 0.00 3.42
754 808 7.069950 AGGTCATTTTCAAACTTTTTCCTAGCT 59.930 33.333 0.00 0.00 0.00 3.32
755 809 7.710907 GGTCATTTTCAAACTTTTTCCTAGCTT 59.289 33.333 0.00 0.00 0.00 3.74
756 810 9.098355 GTCATTTTCAAACTTTTTCCTAGCTTT 57.902 29.630 0.00 0.00 0.00 3.51
757 811 9.665719 TCATTTTCAAACTTTTTCCTAGCTTTT 57.334 25.926 0.00 0.00 0.00 2.27
758 812 9.920826 CATTTTCAAACTTTTTCCTAGCTTTTC 57.079 29.630 0.00 0.00 0.00 2.29
759 813 8.487313 TTTTCAAACTTTTTCCTAGCTTTTCC 57.513 30.769 0.00 0.00 0.00 3.13
760 814 6.783708 TCAAACTTTTTCCTAGCTTTTCCA 57.216 33.333 0.00 0.00 0.00 3.53
761 815 7.360113 TCAAACTTTTTCCTAGCTTTTCCAT 57.640 32.000 0.00 0.00 0.00 3.41
762 816 7.791029 TCAAACTTTTTCCTAGCTTTTCCATT 58.209 30.769 0.00 0.00 0.00 3.16
763 817 8.264347 TCAAACTTTTTCCTAGCTTTTCCATTT 58.736 29.630 0.00 0.00 0.00 2.32
764 818 8.892723 CAAACTTTTTCCTAGCTTTTCCATTTT 58.107 29.630 0.00 0.00 0.00 1.82
765 819 9.461312 AAACTTTTTCCTAGCTTTTCCATTTTT 57.539 25.926 0.00 0.00 0.00 1.94
801 855 8.800332 TCTACATAGATAGGAATTTACGGTTCC 58.200 37.037 0.00 0.00 44.39 3.62
802 856 7.369551 ACATAGATAGGAATTTACGGTTCCA 57.630 36.000 7.56 0.00 46.05 3.53
803 857 7.215085 ACATAGATAGGAATTTACGGTTCCAC 58.785 38.462 7.56 0.00 46.05 4.02
804 858 5.687166 AGATAGGAATTTACGGTTCCACA 57.313 39.130 7.56 0.00 46.05 4.17
805 859 5.425630 AGATAGGAATTTACGGTTCCACAC 58.574 41.667 7.56 0.00 46.05 3.82
806 860 3.782656 AGGAATTTACGGTTCCACACT 57.217 42.857 7.56 0.00 46.05 3.55
807 861 4.094830 AGGAATTTACGGTTCCACACTT 57.905 40.909 7.56 0.00 46.05 3.16
808 862 4.466827 AGGAATTTACGGTTCCACACTTT 58.533 39.130 7.56 0.00 46.05 2.66
809 863 4.517832 AGGAATTTACGGTTCCACACTTTC 59.482 41.667 7.56 0.00 46.05 2.62
810 864 4.276431 GGAATTTACGGTTCCACACTTTCA 59.724 41.667 0.25 0.00 43.67 2.69
811 865 4.823790 ATTTACGGTTCCACACTTTCAC 57.176 40.909 0.00 0.00 0.00 3.18
812 866 2.983907 TACGGTTCCACACTTTCACA 57.016 45.000 0.00 0.00 0.00 3.58
813 867 2.341846 ACGGTTCCACACTTTCACAT 57.658 45.000 0.00 0.00 0.00 3.21
814 868 3.478857 ACGGTTCCACACTTTCACATA 57.521 42.857 0.00 0.00 0.00 2.29
815 869 4.015872 ACGGTTCCACACTTTCACATAT 57.984 40.909 0.00 0.00 0.00 1.78
816 870 5.155278 ACGGTTCCACACTTTCACATATA 57.845 39.130 0.00 0.00 0.00 0.86
827 881 7.911727 CACACTTTCACATATATGTCCAACATG 59.088 37.037 15.60 11.79 39.53 3.21
1182 1238 1.745115 GCTGTCATGCCTTGCCGTA 60.745 57.895 0.00 0.00 0.00 4.02
1192 1248 1.813786 GCCTTGCCGTACAACCAATTA 59.186 47.619 0.00 0.00 33.68 1.40
1210 1266 4.794278 ATTATGGGTATCGTGCATCGTA 57.206 40.909 8.22 0.00 40.80 3.43
1217 1273 2.863401 ATCGTGCATCGTAGTGCTAA 57.137 45.000 10.48 0.00 45.27 3.09
1435 4241 1.078823 TGGACAAGCTCTCCTTAGGGA 59.921 52.381 10.90 0.00 39.70 4.20
1922 4804 2.660552 CGCCTTTGTGGACGACGT 60.661 61.111 0.00 0.00 37.47 4.34
1923 4805 1.372004 CGCCTTTGTGGACGACGTA 60.372 57.895 0.00 0.00 37.47 3.57
1924 4806 1.342082 CGCCTTTGTGGACGACGTAG 61.342 60.000 0.00 0.00 37.47 3.51
1925 4807 1.012486 GCCTTTGTGGACGACGTAGG 61.012 60.000 0.00 3.95 38.35 3.18
1926 4808 0.316204 CCTTTGTGGACGACGTAGGT 59.684 55.000 0.00 0.00 38.35 3.08
1927 4809 1.269936 CCTTTGTGGACGACGTAGGTT 60.270 52.381 0.00 0.00 38.35 3.50
1928 4810 2.056577 CTTTGTGGACGACGTAGGTTC 58.943 52.381 0.00 0.00 0.00 3.62
1929 4811 0.314935 TTGTGGACGACGTAGGTTCC 59.685 55.000 0.00 0.00 0.00 3.62
2025 4915 5.941058 TCTCTTCGAGTTAGAGATTCACAGT 59.059 40.000 10.58 0.00 42.33 3.55
2325 5239 1.065126 GGGGTTGCTTGCTCTATGAGT 60.065 52.381 0.00 0.00 31.39 3.41
2335 5249 4.152284 TGCTCTATGAGTTAGTCCTCGA 57.848 45.455 0.00 0.00 34.04 4.04
2473 5387 8.668510 TGCACTAATTTCATCTTTCCTCTATC 57.331 34.615 0.00 0.00 0.00 2.08
2494 5409 3.007074 TCCTTTCACTTGTACGCATACCA 59.993 43.478 0.00 0.00 0.00 3.25
2555 5470 9.525007 CATTGAATACGTACACTAGAAACAAAC 57.475 33.333 0.00 0.00 0.00 2.93
2567 5482 8.472413 ACACTAGAAACAAACGCCTCTATAATA 58.528 33.333 0.00 0.00 0.00 0.98
2599 5514 6.861065 TTTCTTGTGTAGATGTGAAAGGAC 57.139 37.500 0.00 0.00 31.54 3.85
2677 5614 7.822161 TTTGCAAATGTATAGGAGCATATGT 57.178 32.000 8.05 0.00 0.00 2.29
2691 5628 8.218338 AGGAGCATATGTTGTAGAAGATTTTG 57.782 34.615 4.29 0.00 0.00 2.44
2716 5653 3.184986 GCCACAACAAAGTGATTTGCATC 59.815 43.478 0.79 0.00 42.05 3.91
2721 5658 0.171007 AAAGTGATTTGCATCGGCGG 59.829 50.000 7.21 0.00 45.35 6.13
2749 5686 2.289320 GGAGCATGATCGGCTTCTATGT 60.289 50.000 12.34 0.00 42.78 2.29
2756 5693 4.682787 TGATCGGCTTCTATGTGTTACTG 58.317 43.478 0.00 0.00 0.00 2.74
2776 5713 1.877443 GGTTTCGTGTTACTGGTGCAT 59.123 47.619 0.00 0.00 0.00 3.96
2779 5716 2.760634 TCGTGTTACTGGTGCATCAT 57.239 45.000 0.00 0.00 0.00 2.45
2815 5752 9.469807 GGTGATTTTAACACATCAAACACAATA 57.530 29.630 0.00 0.00 39.65 1.90
2817 5754 9.175060 TGATTTTAACACATCAAACACAATACG 57.825 29.630 0.00 0.00 0.00 3.06
2819 5756 8.775220 TTTTAACACATCAAACACAATACGAG 57.225 30.769 0.00 0.00 0.00 4.18
2827 5774 5.109210 TCAAACACAATACGAGCATAGAGG 58.891 41.667 0.00 0.00 0.00 3.69
2834 5781 2.578714 CGAGCATAGAGGAGGGGGC 61.579 68.421 0.00 0.00 0.00 5.80
2836 5783 2.122189 GCATAGAGGAGGGGGCCT 60.122 66.667 0.84 0.00 42.17 5.19
2843 5790 2.610859 GGAGGGGGCCTTCTCACA 60.611 66.667 22.13 0.00 31.76 3.58
2878 5835 2.942376 TGCAAAGCACCGATCGATTTAT 59.058 40.909 18.66 0.00 31.71 1.40
2888 5845 2.224079 CGATCGATTTATTGTGGCCAGG 59.776 50.000 10.26 0.00 0.00 4.45
2890 5847 2.917933 TCGATTTATTGTGGCCAGGAG 58.082 47.619 5.11 0.00 0.00 3.69
2898 5855 0.253160 TGTGGCCAGGAGATAAGGGT 60.253 55.000 5.11 0.00 0.00 4.34
2902 5859 1.285078 GGCCAGGAGATAAGGGTTTGT 59.715 52.381 0.00 0.00 0.00 2.83
2903 5860 2.644676 GCCAGGAGATAAGGGTTTGTC 58.355 52.381 0.00 0.00 0.00 3.18
2905 5862 2.846827 CCAGGAGATAAGGGTTTGTCCT 59.153 50.000 0.00 0.00 39.17 3.85
2931 5889 2.732619 CCTTCACTACCCCCGCCTC 61.733 68.421 0.00 0.00 0.00 4.70
2953 5911 0.912006 GCCCCACTCCTCTCTCCTTT 60.912 60.000 0.00 0.00 0.00 3.11
2954 5912 1.662686 CCCCACTCCTCTCTCCTTTT 58.337 55.000 0.00 0.00 0.00 2.27
2955 5913 1.988846 CCCCACTCCTCTCTCCTTTTT 59.011 52.381 0.00 0.00 0.00 1.94
3012 5972 0.833287 CCTCATTCCCACGATCTGGT 59.167 55.000 9.47 0.00 38.60 4.00
3013 5973 1.202580 CCTCATTCCCACGATCTGGTC 60.203 57.143 9.47 0.00 38.60 4.02
3016 5976 1.210478 CATTCCCACGATCTGGTCCTT 59.790 52.381 9.47 0.00 38.60 3.36
3046 6006 2.276740 CATTGGCAGGAGGGTCCC 59.723 66.667 0.00 0.00 37.19 4.46
3081 6044 2.602676 CCCCAAGCGGAGGAGGAAA 61.603 63.158 0.00 0.00 0.00 3.13
3083 6046 1.679898 CCAAGCGGAGGAGGAAAGT 59.320 57.895 0.00 0.00 0.00 2.66
3098 6061 1.265454 AAAGTGTCCTAGGAGGGGCG 61.265 60.000 13.15 0.00 35.59 6.13
3101 6064 2.838693 GTCCTAGGAGGGGCGTCC 60.839 72.222 13.15 0.00 35.59 4.79
3115 6078 3.138798 GTCCCACGGCTAGCTCGA 61.139 66.667 25.67 8.61 0.00 4.04
3119 6082 2.786495 CCACGGCTAGCTCGATGGT 61.786 63.158 25.67 8.80 0.00 3.55
3121 6084 1.753078 ACGGCTAGCTCGATGGTCA 60.753 57.895 25.67 0.00 0.00 4.02
3127 6090 1.410517 CTAGCTCGATGGTCATGGTGT 59.589 52.381 0.00 0.00 0.00 4.16
3128 6091 0.615331 AGCTCGATGGTCATGGTGTT 59.385 50.000 0.00 0.00 0.00 3.32
3132 6095 2.813754 CTCGATGGTCATGGTGTTGTTT 59.186 45.455 0.00 0.00 0.00 2.83
3138 6101 0.665835 TCATGGTGTTGTTTCGTGGC 59.334 50.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.037136 CCTTCAGCTTGCTCCGGTG 61.037 63.158 0.00 0.00 0.00 4.94
2 3 3.130160 GCCTTCAGCTTGCTCCGG 61.130 66.667 0.00 0.00 38.99 5.14
5 6 1.874562 CTGTGCCTTCAGCTTGCTC 59.125 57.895 0.00 0.00 44.23 4.26
6 7 4.076244 CTGTGCCTTCAGCTTGCT 57.924 55.556 0.00 0.00 44.23 3.91
12 13 0.607217 TGATGGTGCTGTGCCTTCAG 60.607 55.000 0.00 0.00 35.92 3.02
13 14 0.038599 ATGATGGTGCTGTGCCTTCA 59.961 50.000 9.34 9.34 42.03 3.02
14 15 0.737219 GATGATGGTGCTGTGCCTTC 59.263 55.000 0.00 0.00 0.00 3.46
15 16 1.028330 CGATGATGGTGCTGTGCCTT 61.028 55.000 0.00 0.00 0.00 4.35
16 17 1.450848 CGATGATGGTGCTGTGCCT 60.451 57.895 0.00 0.00 0.00 4.75
17 18 1.709147 GACGATGATGGTGCTGTGCC 61.709 60.000 0.00 0.00 0.00 5.01
18 19 1.709147 GGACGATGATGGTGCTGTGC 61.709 60.000 0.00 0.00 0.00 4.57
19 20 1.091771 GGGACGATGATGGTGCTGTG 61.092 60.000 0.00 0.00 0.00 3.66
20 21 1.221840 GGGACGATGATGGTGCTGT 59.778 57.895 0.00 0.00 0.00 4.40
21 22 0.107508 AAGGGACGATGATGGTGCTG 60.108 55.000 0.00 0.00 0.00 4.41
22 23 0.179000 GAAGGGACGATGATGGTGCT 59.821 55.000 0.00 0.00 0.00 4.40
23 24 0.107703 TGAAGGGACGATGATGGTGC 60.108 55.000 0.00 0.00 0.00 5.01
24 25 2.158914 TGATGAAGGGACGATGATGGTG 60.159 50.000 0.00 0.00 0.00 4.17
25 26 2.118679 TGATGAAGGGACGATGATGGT 58.881 47.619 0.00 0.00 0.00 3.55
28 29 5.568423 GCTCTAATGATGAAGGGACGATGAT 60.568 44.000 0.00 0.00 0.00 2.45
35 36 3.389329 GTCTGGCTCTAATGATGAAGGGA 59.611 47.826 0.00 0.00 0.00 4.20
40 41 3.118261 GGTTGGTCTGGCTCTAATGATGA 60.118 47.826 0.00 0.00 0.00 2.92
46 47 2.054799 ACAAGGTTGGTCTGGCTCTAA 58.945 47.619 0.00 0.00 0.00 2.10
47 48 1.729586 ACAAGGTTGGTCTGGCTCTA 58.270 50.000 0.00 0.00 0.00 2.43
48 49 0.846693 AACAAGGTTGGTCTGGCTCT 59.153 50.000 0.00 0.00 0.00 4.09
51 52 3.951663 ACTATAACAAGGTTGGTCTGGC 58.048 45.455 0.00 0.00 0.00 4.85
53 54 7.660208 ACTGTTTACTATAACAAGGTTGGTCTG 59.340 37.037 0.00 0.00 37.55 3.51
56 57 6.647895 CGACTGTTTACTATAACAAGGTTGGT 59.352 38.462 0.00 0.00 37.55 3.67
58 59 7.878477 TCGACTGTTTACTATAACAAGGTTG 57.122 36.000 0.00 0.00 37.55 3.77
65 66 7.787823 ACGACTTTCGACTGTTTACTATAAC 57.212 36.000 1.94 0.00 43.74 1.89
74 75 1.326548 GCACAACGACTTTCGACTGTT 59.673 47.619 1.94 0.00 43.74 3.16
82 83 3.050619 CGAGACTTAGCACAACGACTTT 58.949 45.455 0.00 0.00 0.00 2.66
83 84 2.292569 TCGAGACTTAGCACAACGACTT 59.707 45.455 0.00 0.00 0.00 3.01
88 90 2.488545 TCCTCTCGAGACTTAGCACAAC 59.511 50.000 12.08 0.00 0.00 3.32
90 92 2.085320 GTCCTCTCGAGACTTAGCACA 58.915 52.381 12.08 0.00 0.00 4.57
99 101 3.134792 GCGCTGGTCCTCTCGAGA 61.135 66.667 15.70 15.70 0.00 4.04
100 102 4.544689 CGCGCTGGTCCTCTCGAG 62.545 72.222 5.93 5.93 0.00 4.04
112 114 3.349006 CTGTTGTTCTGGCGCGCT 61.349 61.111 32.29 0.00 0.00 5.92
121 123 1.573829 TTCATCGGCGGCTGTTGTTC 61.574 55.000 17.01 0.00 0.00 3.18
126 128 1.888436 TTCTCTTCATCGGCGGCTGT 61.888 55.000 7.21 0.00 0.00 4.40
133 138 2.541999 GGTCTACGCTTCTCTTCATCGG 60.542 54.545 0.00 0.00 0.00 4.18
164 169 3.978855 CGTGTTCGTGTGTCTTCAGATTA 59.021 43.478 0.00 0.00 0.00 1.75
165 170 2.794910 CGTGTTCGTGTGTCTTCAGATT 59.205 45.455 0.00 0.00 0.00 2.40
167 172 1.835121 CGTGTTCGTGTGTCTTCAGA 58.165 50.000 0.00 0.00 0.00 3.27
186 191 5.345202 ACTTGAATGTGATCTTCGTTCGTAC 59.655 40.000 14.07 0.00 34.65 3.67
197 202 4.574013 GTCTGGATCCACTTGAATGTGATC 59.426 45.833 11.44 0.00 40.12 2.92
199 204 3.327464 TGTCTGGATCCACTTGAATGTGA 59.673 43.478 11.44 0.00 40.12 3.58
201 206 4.371624 TTGTCTGGATCCACTTGAATGT 57.628 40.909 11.44 0.00 0.00 2.71
202 207 4.378770 CGTTTGTCTGGATCCACTTGAATG 60.379 45.833 11.44 5.75 0.00 2.67
205 210 2.766313 CGTTTGTCTGGATCCACTTGA 58.234 47.619 11.44 3.91 0.00 3.02
231 241 3.256558 TCAACAGAGCTCACATGATTCG 58.743 45.455 17.77 0.00 0.00 3.34
237 247 3.758755 TGACTTCAACAGAGCTCACAT 57.241 42.857 17.77 0.00 0.00 3.21
238 248 3.541996 TTGACTTCAACAGAGCTCACA 57.458 42.857 17.77 0.00 0.00 3.58
244 254 5.049818 GTGTGGAGATTTGACTTCAACAGAG 60.050 44.000 0.00 0.00 35.28 3.35
255 265 0.036388 GAGGGCGTGTGGAGATTTGA 60.036 55.000 0.00 0.00 0.00 2.69
268 278 1.869767 GTTTAGCATCATCAGAGGGCG 59.130 52.381 0.00 0.00 34.33 6.13
286 296 2.590575 CCGTTCTGGTGGTGCGTT 60.591 61.111 0.00 0.00 0.00 4.84
296 306 1.153628 CCGTCTAAGCCCCGTTCTG 60.154 63.158 0.00 0.00 0.00 3.02
318 328 8.210265 TGGCTCTTTGAATTTGAAATAAGGTTT 58.790 29.630 0.00 0.00 0.00 3.27
328 338 2.247358 GGGGTGGCTCTTTGAATTTGA 58.753 47.619 0.00 0.00 0.00 2.69
332 342 1.000896 CGGGGGTGGCTCTTTGAAT 60.001 57.895 0.00 0.00 0.00 2.57
337 347 4.115199 GATGCGGGGGTGGCTCTT 62.115 66.667 0.00 0.00 0.00 2.85
342 352 4.096003 AAGACGATGCGGGGGTGG 62.096 66.667 0.00 0.00 0.00 4.61
343 353 2.511600 GAAGACGATGCGGGGGTG 60.512 66.667 0.00 0.00 0.00 4.61
344 354 2.866523 TAGGAAGACGATGCGGGGGT 62.867 60.000 0.00 0.00 0.00 4.95
345 355 1.682451 TTAGGAAGACGATGCGGGGG 61.682 60.000 0.00 0.00 0.00 5.40
346 356 0.177141 TTTAGGAAGACGATGCGGGG 59.823 55.000 0.00 0.00 0.00 5.73
347 357 2.240493 ATTTAGGAAGACGATGCGGG 57.760 50.000 0.00 0.00 0.00 6.13
348 358 5.064198 TGTTTTATTTAGGAAGACGATGCGG 59.936 40.000 0.00 0.00 0.00 5.69
349 359 5.957796 GTGTTTTATTTAGGAAGACGATGCG 59.042 40.000 0.00 0.00 0.00 4.73
350 360 6.837992 TGTGTTTTATTTAGGAAGACGATGC 58.162 36.000 0.00 0.00 0.00 3.91
351 361 9.840427 ATTTGTGTTTTATTTAGGAAGACGATG 57.160 29.630 0.00 0.00 0.00 3.84
368 378 9.482627 TTTTTGTGTTTGTCTAGATTTGTGTTT 57.517 25.926 0.00 0.00 0.00 2.83
396 407 9.507329 GAAGGGCTCATACATCATTTTTAGATA 57.493 33.333 0.00 0.00 0.00 1.98
398 409 6.772716 GGAAGGGCTCATACATCATTTTTAGA 59.227 38.462 0.00 0.00 0.00 2.10
406 417 0.106708 GCGGAAGGGCTCATACATCA 59.893 55.000 0.00 0.00 0.00 3.07
407 418 0.603975 GGCGGAAGGGCTCATACATC 60.604 60.000 0.00 0.00 38.40 3.06
409 420 2.908015 GGCGGAAGGGCTCATACA 59.092 61.111 0.00 0.00 38.40 2.29
446 458 2.678336 GTGGTGTTAGGCATAGAAGTGC 59.322 50.000 0.00 0.00 44.31 4.40
448 460 2.093658 CCGTGGTGTTAGGCATAGAAGT 60.094 50.000 0.00 0.00 0.00 3.01
450 462 2.181125 TCCGTGGTGTTAGGCATAGAA 58.819 47.619 0.00 0.00 0.00 2.10
452 464 2.167693 TCTTCCGTGGTGTTAGGCATAG 59.832 50.000 0.00 0.00 0.00 2.23
453 465 2.093869 GTCTTCCGTGGTGTTAGGCATA 60.094 50.000 0.00 0.00 0.00 3.14
457 469 0.599558 TCGTCTTCCGTGGTGTTAGG 59.400 55.000 0.00 0.00 37.94 2.69
458 470 2.325761 CTTCGTCTTCCGTGGTGTTAG 58.674 52.381 0.00 0.00 37.94 2.34
459 471 1.603678 GCTTCGTCTTCCGTGGTGTTA 60.604 52.381 0.00 0.00 37.94 2.41
460 472 0.878961 GCTTCGTCTTCCGTGGTGTT 60.879 55.000 0.00 0.00 37.94 3.32
462 474 2.027625 GGCTTCGTCTTCCGTGGTG 61.028 63.158 0.00 0.00 37.94 4.17
463 475 2.342648 GGCTTCGTCTTCCGTGGT 59.657 61.111 0.00 0.00 37.94 4.16
464 476 2.558554 ATCGGCTTCGTCTTCCGTGG 62.559 60.000 0.00 0.00 43.35 4.94
466 478 1.139095 GATCGGCTTCGTCTTCCGT 59.861 57.895 0.00 0.00 43.35 4.69
467 479 0.661552 TAGATCGGCTTCGTCTTCCG 59.338 55.000 0.00 0.00 44.16 4.30
468 480 1.597445 CGTAGATCGGCTTCGTCTTCC 60.597 57.143 0.00 0.00 33.37 3.46
469 481 1.744374 CGTAGATCGGCTTCGTCTTC 58.256 55.000 0.00 0.00 33.37 2.87
470 482 3.920144 CGTAGATCGGCTTCGTCTT 57.080 52.632 0.00 0.00 33.37 3.01
541 555 4.918201 CGATCCCCTGGCCTTCGC 62.918 72.222 3.32 0.00 0.00 4.70
546 560 2.444895 AGAGACGATCCCCTGGCC 60.445 66.667 0.00 0.00 0.00 5.36
548 562 1.033574 GTACAGAGACGATCCCCTGG 58.966 60.000 0.00 0.00 0.00 4.45
549 563 2.060050 AGTACAGAGACGATCCCCTG 57.940 55.000 0.00 0.00 0.00 4.45
551 565 3.502979 GTCATAGTACAGAGACGATCCCC 59.497 52.174 0.00 0.00 0.00 4.81
552 566 4.391155 AGTCATAGTACAGAGACGATCCC 58.609 47.826 0.00 0.00 36.18 3.85
553 567 6.225318 AGTAGTCATAGTACAGAGACGATCC 58.775 44.000 0.00 0.00 36.18 3.36
554 568 7.149973 AGAGTAGTCATAGTACAGAGACGATC 58.850 42.308 0.00 1.70 36.18 3.69
555 569 7.058023 AGAGTAGTCATAGTACAGAGACGAT 57.942 40.000 0.00 0.00 36.18 3.73
556 570 6.468333 AGAGTAGTCATAGTACAGAGACGA 57.532 41.667 0.00 0.00 36.18 4.20
557 571 7.542534 AAAGAGTAGTCATAGTACAGAGACG 57.457 40.000 0.00 0.00 36.18 4.18
558 572 8.117988 CGAAAAGAGTAGTCATAGTACAGAGAC 58.882 40.741 0.00 0.00 0.00 3.36
560 574 7.976826 ACGAAAAGAGTAGTCATAGTACAGAG 58.023 38.462 0.00 0.00 0.00 3.35
561 575 7.201504 CGACGAAAAGAGTAGTCATAGTACAGA 60.202 40.741 0.00 0.00 33.56 3.41
564 578 6.190962 CCGACGAAAAGAGTAGTCATAGTAC 58.809 44.000 0.00 0.00 33.56 2.73
566 580 4.096081 CCCGACGAAAAGAGTAGTCATAGT 59.904 45.833 0.00 0.00 33.56 2.12
567 581 4.096081 ACCCGACGAAAAGAGTAGTCATAG 59.904 45.833 0.00 0.00 33.56 2.23
568 582 4.012374 ACCCGACGAAAAGAGTAGTCATA 58.988 43.478 0.00 0.00 33.56 2.15
569 583 2.824341 ACCCGACGAAAAGAGTAGTCAT 59.176 45.455 0.00 0.00 33.56 3.06
570 584 2.233271 ACCCGACGAAAAGAGTAGTCA 58.767 47.619 0.00 0.00 33.56 3.41
571 585 3.294816 AACCCGACGAAAAGAGTAGTC 57.705 47.619 0.00 0.00 0.00 2.59
572 586 3.387397 CAAACCCGACGAAAAGAGTAGT 58.613 45.455 0.00 0.00 0.00 2.73
573 587 2.735134 CCAAACCCGACGAAAAGAGTAG 59.265 50.000 0.00 0.00 0.00 2.57
576 590 1.529865 GTCCAAACCCGACGAAAAGAG 59.470 52.381 0.00 0.00 0.00 2.85
577 591 1.139455 AGTCCAAACCCGACGAAAAGA 59.861 47.619 0.00 0.00 35.33 2.52
578 592 1.589803 AGTCCAAACCCGACGAAAAG 58.410 50.000 0.00 0.00 35.33 2.27
579 593 1.941975 GAAGTCCAAACCCGACGAAAA 59.058 47.619 0.00 0.00 35.33 2.29
580 594 1.134461 TGAAGTCCAAACCCGACGAAA 60.134 47.619 0.00 0.00 35.33 3.46
581 595 0.464870 TGAAGTCCAAACCCGACGAA 59.535 50.000 0.00 0.00 35.33 3.85
583 597 0.949105 CCTGAAGTCCAAACCCGACG 60.949 60.000 0.00 0.00 35.33 5.12
584 598 0.605589 CCCTGAAGTCCAAACCCGAC 60.606 60.000 0.00 0.00 0.00 4.79
585 599 0.765135 TCCCTGAAGTCCAAACCCGA 60.765 55.000 0.00 0.00 0.00 5.14
586 600 0.321653 CTCCCTGAAGTCCAAACCCG 60.322 60.000 0.00 0.00 0.00 5.28
588 602 0.110486 TGCTCCCTGAAGTCCAAACC 59.890 55.000 0.00 0.00 0.00 3.27
589 603 1.882623 CTTGCTCCCTGAAGTCCAAAC 59.117 52.381 0.00 0.00 0.00 2.93
590 604 1.494721 ACTTGCTCCCTGAAGTCCAAA 59.505 47.619 0.00 0.00 0.00 3.28
591 605 1.140312 ACTTGCTCCCTGAAGTCCAA 58.860 50.000 0.00 0.00 0.00 3.53
592 606 1.140312 AACTTGCTCCCTGAAGTCCA 58.860 50.000 0.00 0.00 31.02 4.02
593 607 3.418684 TTAACTTGCTCCCTGAAGTCC 57.581 47.619 0.00 0.00 31.02 3.85
598 612 2.354704 CCGTGATTAACTTGCTCCCTGA 60.355 50.000 0.00 0.00 0.00 3.86
599 613 2.009774 CCGTGATTAACTTGCTCCCTG 58.990 52.381 0.00 0.00 0.00 4.45
601 615 2.109425 ACCGTGATTAACTTGCTCCC 57.891 50.000 0.00 0.00 0.00 4.30
604 618 7.733402 TTAAGTTTACCGTGATTAACTTGCT 57.267 32.000 0.00 0.00 40.11 3.91
647 661 8.203937 TCTTTTCTCTCTCTTGTATCGACTAG 57.796 38.462 0.00 0.00 0.00 2.57
648 662 8.563123 TTCTTTTCTCTCTCTTGTATCGACTA 57.437 34.615 0.00 0.00 0.00 2.59
649 663 7.455641 TTCTTTTCTCTCTCTTGTATCGACT 57.544 36.000 0.00 0.00 0.00 4.18
669 723 9.561270 CGTTCTTTCTTTCTTTCTTTCTTTCTT 57.439 29.630 0.00 0.00 0.00 2.52
670 724 8.947115 TCGTTCTTTCTTTCTTTCTTTCTTTCT 58.053 29.630 0.00 0.00 0.00 2.52
672 726 8.947115 TCTCGTTCTTTCTTTCTTTCTTTCTTT 58.053 29.630 0.00 0.00 0.00 2.52
673 727 8.494016 TCTCGTTCTTTCTTTCTTTCTTTCTT 57.506 30.769 0.00 0.00 0.00 2.52
676 730 9.908152 TTTTTCTCGTTCTTTCTTTCTTTCTTT 57.092 25.926 0.00 0.00 0.00 2.52
707 761 3.810310 TCGATGTACATGTGCCATACA 57.190 42.857 14.43 4.57 44.87 2.29
708 762 3.494626 CCTTCGATGTACATGTGCCATAC 59.505 47.826 14.43 0.00 0.00 2.39
709 763 3.133901 ACCTTCGATGTACATGTGCCATA 59.866 43.478 14.43 0.00 0.00 2.74
710 764 2.092968 ACCTTCGATGTACATGTGCCAT 60.093 45.455 14.43 10.48 0.00 4.40
711 765 1.277842 ACCTTCGATGTACATGTGCCA 59.722 47.619 14.43 5.51 0.00 4.92
712 766 1.933853 GACCTTCGATGTACATGTGCC 59.066 52.381 14.43 0.00 0.00 5.01
713 767 2.616960 TGACCTTCGATGTACATGTGC 58.383 47.619 14.43 8.01 0.00 4.57
714 768 5.801350 AAATGACCTTCGATGTACATGTG 57.199 39.130 14.43 5.70 0.00 3.21
715 769 5.937540 TGAAAATGACCTTCGATGTACATGT 59.062 36.000 14.43 2.69 0.00 3.21
716 770 6.421377 TGAAAATGACCTTCGATGTACATG 57.579 37.500 14.43 6.04 0.00 3.21
717 771 7.174946 AGTTTGAAAATGACCTTCGATGTACAT 59.825 33.333 8.43 8.43 0.00 2.29
718 772 6.485313 AGTTTGAAAATGACCTTCGATGTACA 59.515 34.615 0.00 0.00 0.00 2.90
719 773 6.899114 AGTTTGAAAATGACCTTCGATGTAC 58.101 36.000 0.00 0.00 0.00 2.90
720 774 7.504924 AAGTTTGAAAATGACCTTCGATGTA 57.495 32.000 0.00 0.00 0.00 2.29
721 775 6.391227 AAGTTTGAAAATGACCTTCGATGT 57.609 33.333 0.00 0.00 0.00 3.06
722 776 7.698836 AAAAGTTTGAAAATGACCTTCGATG 57.301 32.000 0.00 0.00 0.00 3.84
723 777 7.438160 GGAAAAAGTTTGAAAATGACCTTCGAT 59.562 33.333 0.00 0.00 0.00 3.59
724 778 6.754675 GGAAAAAGTTTGAAAATGACCTTCGA 59.245 34.615 0.00 0.00 0.00 3.71
725 779 6.756542 AGGAAAAAGTTTGAAAATGACCTTCG 59.243 34.615 0.00 0.00 0.00 3.79
726 780 9.249457 CTAGGAAAAAGTTTGAAAATGACCTTC 57.751 33.333 0.00 0.00 0.00 3.46
727 781 7.710907 GCTAGGAAAAAGTTTGAAAATGACCTT 59.289 33.333 0.00 0.00 0.00 3.50
728 782 7.069950 AGCTAGGAAAAAGTTTGAAAATGACCT 59.930 33.333 0.00 0.00 0.00 3.85
729 783 7.210174 AGCTAGGAAAAAGTTTGAAAATGACC 58.790 34.615 0.00 0.00 0.00 4.02
730 784 8.648557 AAGCTAGGAAAAAGTTTGAAAATGAC 57.351 30.769 0.00 0.00 0.00 3.06
731 785 9.665719 AAAAGCTAGGAAAAAGTTTGAAAATGA 57.334 25.926 0.00 0.00 0.00 2.57
732 786 9.920826 GAAAAGCTAGGAAAAAGTTTGAAAATG 57.079 29.630 0.00 0.00 0.00 2.32
733 787 9.109393 GGAAAAGCTAGGAAAAAGTTTGAAAAT 57.891 29.630 0.00 0.00 0.00 1.82
734 788 8.097662 TGGAAAAGCTAGGAAAAAGTTTGAAAA 58.902 29.630 0.00 0.00 0.00 2.29
735 789 7.616313 TGGAAAAGCTAGGAAAAAGTTTGAAA 58.384 30.769 0.00 0.00 0.00 2.69
736 790 7.176589 TGGAAAAGCTAGGAAAAAGTTTGAA 57.823 32.000 0.00 0.00 0.00 2.69
737 791 6.783708 TGGAAAAGCTAGGAAAAAGTTTGA 57.216 33.333 0.00 0.00 0.00 2.69
738 792 8.437360 AAATGGAAAAGCTAGGAAAAAGTTTG 57.563 30.769 0.00 0.00 0.00 2.93
739 793 9.461312 AAAAATGGAAAAGCTAGGAAAAAGTTT 57.539 25.926 0.00 0.00 0.00 2.66
775 829 8.800332 GGAACCGTAAATTCCTATCTATGTAGA 58.200 37.037 0.00 0.00 42.15 2.59
776 830 8.582437 TGGAACCGTAAATTCCTATCTATGTAG 58.418 37.037 5.43 0.00 45.14 2.74
777 831 8.362639 GTGGAACCGTAAATTCCTATCTATGTA 58.637 37.037 5.43 0.00 45.14 2.29
778 832 7.147620 TGTGGAACCGTAAATTCCTATCTATGT 60.148 37.037 5.43 0.00 45.14 2.29
779 833 7.170998 GTGTGGAACCGTAAATTCCTATCTATG 59.829 40.741 5.43 0.00 45.14 2.23
780 834 7.070821 AGTGTGGAACCGTAAATTCCTATCTAT 59.929 37.037 5.43 0.00 45.14 1.98
781 835 6.381994 AGTGTGGAACCGTAAATTCCTATCTA 59.618 38.462 5.43 0.00 45.14 1.98
782 836 5.189145 AGTGTGGAACCGTAAATTCCTATCT 59.811 40.000 5.43 0.00 45.14 1.98
783 837 5.425630 AGTGTGGAACCGTAAATTCCTATC 58.574 41.667 5.43 0.00 45.14 2.08
784 838 5.431179 AGTGTGGAACCGTAAATTCCTAT 57.569 39.130 5.43 0.00 45.14 2.57
785 839 4.895668 AGTGTGGAACCGTAAATTCCTA 57.104 40.909 5.43 0.00 45.14 2.94
786 840 3.782656 AGTGTGGAACCGTAAATTCCT 57.217 42.857 5.43 0.00 45.14 3.36
787 841 4.276431 TGAAAGTGTGGAACCGTAAATTCC 59.724 41.667 0.00 0.00 45.13 3.01
788 842 5.209977 GTGAAAGTGTGGAACCGTAAATTC 58.790 41.667 0.00 0.00 34.36 2.17
789 843 4.641094 TGTGAAAGTGTGGAACCGTAAATT 59.359 37.500 0.00 0.00 34.36 1.82
790 844 4.200874 TGTGAAAGTGTGGAACCGTAAAT 58.799 39.130 0.00 0.00 34.36 1.40
791 845 3.607741 TGTGAAAGTGTGGAACCGTAAA 58.392 40.909 0.00 0.00 34.36 2.01
792 846 3.263489 TGTGAAAGTGTGGAACCGTAA 57.737 42.857 0.00 0.00 34.36 3.18
793 847 2.983907 TGTGAAAGTGTGGAACCGTA 57.016 45.000 0.00 0.00 34.36 4.02
794 848 2.341846 ATGTGAAAGTGTGGAACCGT 57.658 45.000 0.00 0.00 34.36 4.83
795 849 5.584649 ACATATATGTGAAAGTGTGGAACCG 59.415 40.000 17.60 0.00 40.03 4.44
796 850 6.038271 GGACATATATGTGAAAGTGTGGAACC 59.962 42.308 22.93 9.02 41.95 3.62
797 851 6.597672 TGGACATATATGTGAAAGTGTGGAAC 59.402 38.462 22.93 3.73 41.95 3.62
798 852 6.716284 TGGACATATATGTGAAAGTGTGGAA 58.284 36.000 22.93 0.00 41.95 3.53
799 853 6.306643 TGGACATATATGTGAAAGTGTGGA 57.693 37.500 22.93 0.00 41.95 4.02
800 854 6.374053 TGTTGGACATATATGTGAAAGTGTGG 59.626 38.462 22.93 0.00 41.95 4.17
801 855 7.376435 TGTTGGACATATATGTGAAAGTGTG 57.624 36.000 22.93 0.00 41.95 3.82
802 856 7.415541 GCATGTTGGACATATATGTGAAAGTGT 60.416 37.037 22.93 0.00 41.95 3.55
803 857 6.914215 GCATGTTGGACATATATGTGAAAGTG 59.086 38.462 22.93 16.18 41.95 3.16
804 858 6.602803 TGCATGTTGGACATATATGTGAAAGT 59.397 34.615 22.93 6.21 41.95 2.66
805 859 6.914215 GTGCATGTTGGACATATATGTGAAAG 59.086 38.462 22.93 9.55 41.95 2.62
806 860 6.602803 AGTGCATGTTGGACATATATGTGAAA 59.397 34.615 22.93 13.25 41.46 2.69
807 861 6.121590 AGTGCATGTTGGACATATATGTGAA 58.878 36.000 22.93 12.08 41.46 3.18
808 862 5.683681 AGTGCATGTTGGACATATATGTGA 58.316 37.500 22.93 6.58 41.46 3.58
809 863 7.495135 TTAGTGCATGTTGGACATATATGTG 57.505 36.000 22.93 7.85 41.46 3.21
810 864 7.938490 TCATTAGTGCATGTTGGACATATATGT 59.062 33.333 18.31 18.31 41.46 2.29
811 865 8.326680 TCATTAGTGCATGTTGGACATATATG 57.673 34.615 11.29 11.29 41.46 1.78
812 866 8.922931 TTCATTAGTGCATGTTGGACATATAT 57.077 30.769 0.00 0.00 41.46 0.86
813 867 8.210265 TCTTCATTAGTGCATGTTGGACATATA 58.790 33.333 0.00 0.00 41.46 0.86
814 868 7.056006 TCTTCATTAGTGCATGTTGGACATAT 58.944 34.615 0.00 0.00 41.46 1.78
815 869 6.413892 TCTTCATTAGTGCATGTTGGACATA 58.586 36.000 0.00 0.00 41.46 2.29
816 870 5.255687 TCTTCATTAGTGCATGTTGGACAT 58.744 37.500 0.00 0.00 41.46 3.06
827 881 2.680339 GCCAACTCCTCTTCATTAGTGC 59.320 50.000 0.00 0.00 0.00 4.40
1182 1238 3.630312 GCACGATACCCATAATTGGTTGT 59.370 43.478 0.00 0.00 41.91 3.32
1192 1248 1.961394 ACTACGATGCACGATACCCAT 59.039 47.619 14.18 0.00 45.77 4.00
1210 1266 4.252073 CTCTCACATGAAGCTTTAGCACT 58.748 43.478 0.00 0.00 45.16 4.40
1217 1273 5.311265 TCATTGAACTCTCACATGAAGCTT 58.689 37.500 0.00 0.00 31.71 3.74
1435 4241 1.071699 ACTGGTTGACAACATAGCCGT 59.928 47.619 19.58 2.62 0.00 5.68
1929 4811 0.320421 AGTTGGTGACCGGAACATCG 60.320 55.000 9.46 0.00 0.00 3.84
2025 4915 2.032377 CGCCTCTAAACGTTTGAGCAAA 60.032 45.455 23.46 1.09 0.00 3.68
2325 5239 3.446442 AACCTACCACTCGAGGACTAA 57.554 47.619 18.41 0.00 36.61 2.24
2335 5249 5.239963 CGAAAACCAATACAAACCTACCACT 59.760 40.000 0.00 0.00 0.00 4.00
2415 5329 3.383185 TGAAACGGAGGCAAAAGATTTGT 59.617 39.130 4.90 0.00 0.00 2.83
2466 5380 4.113354 GCGTACAAGTGAAAGGATAGAGG 58.887 47.826 0.00 0.00 0.00 3.69
2473 5387 3.331150 TGGTATGCGTACAAGTGAAAGG 58.669 45.455 17.62 0.00 32.25 3.11
2529 5444 9.525007 GTTTGTTTCTAGTGTACGTATTCAATG 57.475 33.333 0.00 0.00 0.00 2.82
2530 5445 8.430063 CGTTTGTTTCTAGTGTACGTATTCAAT 58.570 33.333 0.00 0.00 0.00 2.57
2533 5448 6.229236 GCGTTTGTTTCTAGTGTACGTATTC 58.771 40.000 0.00 0.00 0.00 1.75
2539 5454 4.304939 AGAGGCGTTTGTTTCTAGTGTAC 58.695 43.478 0.00 0.00 0.00 2.90
2555 5470 9.490379 AAGAAAATACAACCTATTATAGAGGCG 57.510 33.333 0.03 0.00 37.63 5.52
2567 5482 7.936847 TCACATCTACACAAGAAAATACAACCT 59.063 33.333 0.00 0.00 37.89 3.50
2655 5576 6.772233 ACAACATATGCTCCTATACATTTGCA 59.228 34.615 1.58 0.00 31.01 4.08
2656 5577 7.206981 ACAACATATGCTCCTATACATTTGC 57.793 36.000 1.58 0.00 31.01 3.68
2657 5578 9.710900 TCTACAACATATGCTCCTATACATTTG 57.289 33.333 1.58 0.00 33.22 2.32
2660 5581 9.314133 TCTTCTACAACATATGCTCCTATACAT 57.686 33.333 1.58 0.00 0.00 2.29
2661 5582 8.706322 TCTTCTACAACATATGCTCCTATACA 57.294 34.615 1.58 0.00 0.00 2.29
2671 5608 6.974622 GGCCACAAAATCTTCTACAACATATG 59.025 38.462 0.00 0.00 0.00 1.78
2672 5609 6.663093 TGGCCACAAAATCTTCTACAACATAT 59.337 34.615 0.00 0.00 0.00 1.78
2676 5613 4.037446 TGTGGCCACAAAATCTTCTACAAC 59.963 41.667 36.10 3.36 38.56 3.32
2677 5614 4.211125 TGTGGCCACAAAATCTTCTACAA 58.789 39.130 36.10 7.45 38.56 2.41
2691 5628 2.865551 CAAATCACTTTGTTGTGGCCAC 59.134 45.455 29.67 29.67 37.54 5.01
2703 5640 1.802636 CCGCCGATGCAAATCACTT 59.197 52.632 0.00 0.00 37.32 3.16
2721 5658 1.953138 CGATCATGCTCCACGAGGC 60.953 63.158 0.00 0.00 33.74 4.70
2734 5671 4.441495 CCAGTAACACATAGAAGCCGATCA 60.441 45.833 0.00 0.00 0.00 2.92
2749 5686 4.121317 CCAGTAACACGAAACCAGTAACA 58.879 43.478 0.00 0.00 0.00 2.41
2756 5693 1.301423 TGCACCAGTAACACGAAACC 58.699 50.000 0.00 0.00 0.00 3.27
2815 5752 1.152440 CCCCCTCCTCTATGCTCGT 60.152 63.158 0.00 0.00 0.00 4.18
2816 5753 2.578714 GCCCCCTCCTCTATGCTCG 61.579 68.421 0.00 0.00 0.00 5.03
2817 5754 2.220586 GGCCCCCTCCTCTATGCTC 61.221 68.421 0.00 0.00 0.00 4.26
2819 5756 1.772156 AAGGCCCCCTCCTCTATGC 60.772 63.158 0.00 0.00 34.82 3.14
2827 5774 0.394899 CATTGTGAGAAGGCCCCCTC 60.395 60.000 13.50 13.50 30.89 4.30
2834 5781 2.169832 ACGTGGACATTGTGAGAAGG 57.830 50.000 0.00 0.00 0.00 3.46
2836 5783 4.055360 CACTTACGTGGACATTGTGAGAA 58.945 43.478 0.00 0.00 37.50 2.87
2843 5790 2.031157 GCTTTGCACTTACGTGGACATT 60.031 45.455 0.00 0.00 41.42 2.71
2865 5822 2.218603 GGCCACAATAAATCGATCGGT 58.781 47.619 16.41 4.70 0.00 4.69
2866 5823 2.217750 TGGCCACAATAAATCGATCGG 58.782 47.619 16.41 0.00 0.00 4.18
2871 5828 2.917933 TCTCCTGGCCACAATAAATCG 58.082 47.619 0.00 0.00 0.00 3.34
2878 5835 0.918983 CCCTTATCTCCTGGCCACAA 59.081 55.000 0.00 0.00 0.00 3.33
2888 5845 5.875359 CAGTTACAGGACAAACCCTTATCTC 59.125 44.000 0.00 0.00 40.05 2.75
2890 5847 4.395231 GCAGTTACAGGACAAACCCTTATC 59.605 45.833 0.00 0.00 40.05 1.75
2898 5855 3.118038 AGTGAAGGCAGTTACAGGACAAA 60.118 43.478 0.00 0.00 0.00 2.83
2902 5859 2.565834 GGTAGTGAAGGCAGTTACAGGA 59.434 50.000 0.00 0.00 0.00 3.86
2903 5860 2.354805 GGGTAGTGAAGGCAGTTACAGG 60.355 54.545 0.00 0.00 0.00 4.00
2905 5862 1.626825 GGGGTAGTGAAGGCAGTTACA 59.373 52.381 0.00 0.00 0.00 2.41
2931 5889 2.043450 AGAGAGGAGTGGGGCTCG 60.043 66.667 0.00 0.00 45.03 5.03
2953 5911 2.439265 AGGGGAGAGGAAAGGGAAAAA 58.561 47.619 0.00 0.00 0.00 1.94
2954 5912 2.149521 AGGGGAGAGGAAAGGGAAAA 57.850 50.000 0.00 0.00 0.00 2.29
2955 5913 2.149521 AAGGGGAGAGGAAAGGGAAA 57.850 50.000 0.00 0.00 0.00 3.13
2956 5914 1.993301 GAAAGGGGAGAGGAAAGGGAA 59.007 52.381 0.00 0.00 0.00 3.97
2957 5915 1.154434 AGAAAGGGGAGAGGAAAGGGA 59.846 52.381 0.00 0.00 0.00 4.20
2958 5916 1.562008 GAGAAAGGGGAGAGGAAAGGG 59.438 57.143 0.00 0.00 0.00 3.95
2959 5917 2.503765 GAGAGAAAGGGGAGAGGAAAGG 59.496 54.545 0.00 0.00 0.00 3.11
2960 5918 2.503765 GGAGAGAAAGGGGAGAGGAAAG 59.496 54.545 0.00 0.00 0.00 2.62
2961 5919 2.552367 GGAGAGAAAGGGGAGAGGAAA 58.448 52.381 0.00 0.00 0.00 3.13
2962 5920 1.273896 GGGAGAGAAAGGGGAGAGGAA 60.274 57.143 0.00 0.00 0.00 3.36
2963 5921 0.340208 GGGAGAGAAAGGGGAGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
3012 5972 3.118408 CCAATGGTCGTGAATAGGAAGGA 60.118 47.826 0.00 0.00 0.00 3.36
3013 5973 3.206150 CCAATGGTCGTGAATAGGAAGG 58.794 50.000 0.00 0.00 0.00 3.46
3016 5976 1.557371 TGCCAATGGTCGTGAATAGGA 59.443 47.619 0.00 0.00 0.00 2.94
3081 6044 2.042843 CGCCCCTCCTAGGACACT 60.043 66.667 7.62 0.00 37.67 3.55
3083 6046 2.043248 GACGCCCCTCCTAGGACA 60.043 66.667 7.62 0.00 37.67 4.02
3098 6061 2.491022 ATCGAGCTAGCCGTGGGAC 61.491 63.158 20.20 1.98 0.00 4.46
3101 6064 2.028190 CCATCGAGCTAGCCGTGG 59.972 66.667 20.20 20.48 0.00 4.94
3115 6078 2.293122 CACGAAACAACACCATGACCAT 59.707 45.455 0.00 0.00 0.00 3.55
3119 6082 0.665835 GCCACGAAACAACACCATGA 59.334 50.000 0.00 0.00 0.00 3.07
3121 6084 0.667993 CAGCCACGAAACAACACCAT 59.332 50.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.