AutoCloner

Multiple sequence alignment - TraesCS3B01G357900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G357900	chr3B	100.000	6351	0	0	1	6351	569595735	569602085	0.000000e+00	11729.0
1	TraesCS3B01G357900	chr3B	90.545	1100	43	13	1980	3055	784575162	784574100	0.000000e+00	1399.0
2	TraesCS3B01G357900	chr3B	90.705	1022	59	8	3214	4205	784574104	784573089	0.000000e+00	1328.0
3	TraesCS3B01G357900	chr3B	90.288	659	50	10	1	647	546383159	546382503	0.000000e+00	850.0
4	TraesCS3B01G357900	chr3B	95.652	230	9	1	1266	1495	761169068	761169296	1.010000e-97	368.0
5	TraesCS3B01G357900	chr3B	95.531	179	4	3	4415	4591	703118528	703118704	3.750000e-72	283.0
6	TraesCS3B01G357900	chr3B	91.860	86	4	3	2149	2233	507274424	507274507	4.020000e-22	117.0
7	TraesCS3B01G357900	chr2D	91.563	3461	243	25	823	4241	229310596	229314049	0.000000e+00	4728.0
8	TraesCS3B01G357900	chr2D	89.466	1310	108	16	4590	5876	229314322	229315624	0.000000e+00	1628.0
9	TraesCS3B01G357900	chr2D	88.550	1345	90	16	4590	5902	588835798	588837110	0.000000e+00	1572.0
10	TraesCS3B01G357900	chr2D	89.146	691	67	6	3559	4241	65813215	65813905	0.000000e+00	854.0
11	TraesCS3B01G357900	chr2D	88.235	697	62	15	1	694	72813640	72814319	0.000000e+00	815.0
12	TraesCS3B01G357900	chr2D	88.742	453	47	4	5902	6351	316603933	316603482	9.310000e-153	551.0
13	TraesCS3B01G357900	chr2D	95.604	273	12	0	1266	1538	616177604	616177876	7.560000e-119	438.0
14	TraesCS3B01G357900	chr2D	94.086	186	9	1	644	827	20826749	20826564	1.350000e-71	281.0
15	TraesCS3B01G357900	chr2D	92.486	173	13	0	4242	4414	229314129	229314301	1.370000e-61	248.0
16	TraesCS3B01G357900	chr2D	86.154	195	21	3	4242	4430	65813986	65814180	8.350000e-49	206.0
17	TraesCS3B01G357900	chr2D	96.190	105	4	0	3875	3979	616177873	616177977	8.470000e-39	172.0
18	TraesCS3B01G357900	chr1B	96.368	2643	85	8	1	2634	632750546	632753186	0.000000e+00	4338.0
19	TraesCS3B01G357900	chr1B	96.363	1842	60	3	2595	4430	632753182	632755022	0.000000e+00	3024.0
20	TraesCS3B01G357900	chr1B	93.388	1346	52	10	4590	5903	632755021	632756361	0.000000e+00	1958.0
21	TraesCS3B01G357900	chr1B	85.602	382	43	10	1617	1987	41449554	41449174	2.150000e-104	390.0
22	TraesCS3B01G357900	chr1B	85.993	307	14	11	1672	1952	41640782	41640479	1.030000e-77	302.0
23	TraesCS3B01G357900	chr1B	97.661	171	2	2	4424	4592	46873040	46872870	6.230000e-75	292.0
24	TraesCS3B01G357900	chr1B	96.364	55	1	1	823	877	679045715	679045768	8.770000e-14	89.8
25	TraesCS3B01G357900	chr1B	93.103	58	3	1	820	877	674658123	674658179	4.080000e-12	84.2
26	TraesCS3B01G357900	chr3A	95.213	1713	76	5	1505	3215	295950724	295949016	0.000000e+00	2704.0
27	TraesCS3B01G357900	chr3A	90.579	1348	85	21	4590	5902	295947655	295946315	0.000000e+00	1748.0
28	TraesCS3B01G357900	chr3A	92.559	1223	61	7	3214	4413	295948892	295947677	0.000000e+00	1727.0
29	TraesCS3B01G357900	chr3A	89.547	794	56	10	1	789	499508174	499507403	0.000000e+00	981.0
30	TraesCS3B01G357900	chr3A	95.385	390	17	1	2248	2637	18663048	18662660	2.520000e-173	619.0
31	TraesCS3B01G357900	chr7A	95.032	1570	73	5	1505	3071	690659516	690661083	0.000000e+00	2462.0
32	TraesCS3B01G357900	chr7A	86.522	601	53	13	3205	3779	627553908	627553310	2.500000e-178	636.0
33	TraesCS3B01G357900	chr7A	95.897	390	15	1	2248	2637	107343365	107342977	1.160000e-176	630.0
34	TraesCS3B01G357900	chr7A	97.076	171	4	1	4425	4594	47626468	47626298	2.900000e-73	287.0
35	TraesCS3B01G357900	chr7A	96.532	173	4	2	4425	4595	97887583	97887411	1.040000e-72	285.0
36	TraesCS3B01G357900	chr7A	96.532	173	4	2	4424	4594	344866592	344866764	1.040000e-72	285.0
37	TraesCS3B01G357900	chr7A	96.023	176	4	3	4425	4597	226849931	226849756	3.750000e-72	283.0
38	TraesCS3B01G357900	chr4B	91.261	1316	80	9	2960	4244	342968532	342967221	0.000000e+00	1760.0
39	TraesCS3B01G357900	chr4B	94.595	629	27	2	3809	4430	186426830	186427458	0.000000e+00	966.0
40	TraesCS3B01G357900	chr4B	94.677	620	32	1	1369	1987	342969376	342968757	0.000000e+00	961.0
41	TraesCS3B01G357900	chr4B	95.652	230	10	0	1266	1495	221458773	221459002	2.800000e-98	370.0
42	TraesCS3B01G357900	chr4B	95.580	181	5	3	4416	4594	667574431	667574252	2.900000e-73	287.0
43	TraesCS3B01G357900	chr6B	90.502	1316	92	8	2960	4244	575574215	575572902	0.000000e+00	1707.0
44	TraesCS3B01G357900	chr6B	93.838	1071	43	5	2668	3715	713228549	713227479	0.000000e+00	1591.0
45	TraesCS3B01G357900	chr6B	94.595	629	27	2	3809	4430	302278968	302279596	0.000000e+00	966.0
46	TraesCS3B01G357900	chr6B	94.277	629	29	2	3809	4430	713227482	713226854	0.000000e+00	955.0
47	TraesCS3B01G357900	chr6B	93.255	341	18	2	4590	4930	713226855	713226520	1.230000e-136	497.0
48	TraesCS3B01G357900	chr6B	87.427	342	37	3	877	1214	713068026	713067687	7.720000e-104	388.0
49	TraesCS3B01G357900	chr6B	91.089	101	9	0	1881	1981	575574537	575574437	3.090000e-28	137.0
50	TraesCS3B01G357900	chr6B	96.364	55	1	1	823	877	715134856	715134909	8.770000e-14	89.8
51	TraesCS3B01G357900	chr6A	94.211	1071	39	8	2668	3715	463742414	463743484	0.000000e+00	1613.0
52	TraesCS3B01G357900	chr6A	90.501	1158	88	13	4590	5736	47591487	47590341	0.000000e+00	1509.0
53	TraesCS3B01G357900	chr6A	93.700	1000	58	2	4590	5588	463744110	463745105	0.000000e+00	1493.0
54	TraesCS3B01G357900	chr6A	87.862	1071	94	11	3205	4244	4927849	4926784	0.000000e+00	1225.0
55	TraesCS3B01G357900	chr6A	94.929	631	23	2	3809	4430	463743481	463744111	0.000000e+00	979.0
56	TraesCS3B01G357900	chr6A	94.595	629	27	2	3809	4430	47592114	47591486	0.000000e+00	966.0
57	TraesCS3B01G357900	chr6A	82.515	652	67	21	3588	4224	51951258	51951877	4.360000e-146	529.0
58	TraesCS3B01G357900	chr6A	78.439	538	66	17	920	1436	613926799	613927307	8.000000e-79	305.0
59	TraesCS3B01G357900	chr6A	96.000	175	5	2	4427	4599	581886789	581886963	3.750000e-72	283.0
60	TraesCS3B01G357900	chr6A	95.954	173	5	2	4421	4591	85270467	85270639	4.850000e-71	279.0
61	TraesCS3B01G357900	chr6A	96.471	170	4	2	4425	4593	333960331	333960163	4.850000e-71	279.0
62	TraesCS3B01G357900	chr6A	96.970	165	4	1	4429	4592	596588287	596588451	6.270000e-70	276.0
63	TraesCS3B01G357900	chr6A	93.122	189	8	5	4429	4614	528995248	528995062	8.110000e-69	272.0
64	TraesCS3B01G357900	chr6A	87.302	189	18	3	4248	4430	4926700	4926512	1.790000e-50	211.0
65	TraesCS3B01G357900	chr1A	94.211	1071	39	7	2668	3715	577674751	577673681	0.000000e+00	1613.0
66	TraesCS3B01G357900	chr1A	87.807	1345	101	21	4590	5902	232831153	232832466	0.000000e+00	1517.0
67	TraesCS3B01G357900	chr1A	93.200	1000	62	3	4590	5588	577672895	577671901	0.000000e+00	1465.0
68	TraesCS3B01G357900	chr1A	94.419	430	17	2	4008	4430	577673323	577672894	0.000000e+00	654.0
69	TraesCS3B01G357900	chr1A	94.872	390	19	1	2248	2637	585606368	585605980	5.440000e-170	608.0
70	TraesCS3B01G357900	chr1A	92.691	301	20	2	5603	5902	18770551	18770252	3.520000e-117	433.0
71	TraesCS3B01G357900	chr1A	92.691	301	21	1	5603	5902	18817371	18817071	3.520000e-117	433.0
72	TraesCS3B01G357900	chr1A	92.691	301	21	1	5603	5902	18899963	18899663	3.520000e-117	433.0
73	TraesCS3B01G357900	chr1A	96.020	201	8	0	3809	4009	577673684	577673484	1.710000e-85	327.0
74	TraesCS3B01G357900	chr1A	97.076	171	4	1	4426	4595	368368489	368368659	2.900000e-73	287.0
75	TraesCS3B01G357900	chr1A	97.590	166	3	1	4427	4591	322177193	322177358	3.750000e-72	283.0
76	TraesCS3B01G357900	chr1A	97.041	169	4	1	4424	4591	494815410	494815578	3.750000e-72	283.0
77	TraesCS3B01G357900	chr1A	97.576	165	3	1	4428	4591	219372627	219372791	1.350000e-71	281.0
78	TraesCS3B01G357900	chr1A	94.565	184	7	2	4429	4611	575456909	575456728	1.350000e-71	281.0
79	TraesCS3B01G357900	chr1A	97.006	167	4	1	4428	4593	33222026	33222192	4.850000e-71	279.0
80	TraesCS3B01G357900	chr1A	95.906	171	5	2	4424	4592	294339517	294339687	6.270000e-70	276.0
81	TraesCS3B01G357900	chr1A	92.727	55	3	1	823	877	581589660	581589713	1.900000e-10	78.7
82	TraesCS3B01G357900	chr2A	93.931	1071	42	5	2668	3715	94388626	94387556	0.000000e+00	1596.0
83	TraesCS3B01G357900	chr2A	93.400	1000	61	2	4590	5588	94386932	94385937	0.000000e+00	1476.0
84	TraesCS3B01G357900	chr2A	94.595	629	27	2	3809	4430	94387559	94386931	0.000000e+00	966.0
85	TraesCS3B01G357900	chr2A	96.532	173	4	2	4420	4591	478761350	478761521	1.040000e-72	285.0
86	TraesCS3B01G357900	chr2A	95.028	181	5	3	4416	4592	709834343	709834523	1.350000e-71	281.0
87	TraesCS3B01G357900	chr5D	88.739	1332	93	15	4590	5902	448352956	448354249	0.000000e+00	1576.0
88	TraesCS3B01G357900	chr5D	91.822	807	48	7	1	789	419927710	419926904	0.000000e+00	1109.0
89	TraesCS3B01G357900	chr5D	89.127	699	60	13	1	694	107314818	107314131	0.000000e+00	856.0
90	TraesCS3B01G357900	chr5D	91.032	591	30	4	3205	3772	524292261	524292851	0.000000e+00	776.0
91	TraesCS3B01G357900	chr5D	88.325	591	45	8	3205	3772	289583310	289582721	0.000000e+00	688.0
92	TraesCS3B01G357900	chr5D	88.742	453	47	4	5902	6351	462522851	462522400	9.310000e-153	551.0
93	TraesCS3B01G357900	chr5D	93.548	186	10	1	644	827	551207184	551207369	6.270000e-70	276.0
94	TraesCS3B01G357900	chr5D	96.407	167	5	1	4429	4594	438829652	438829818	2.260000e-69	274.0
95	TraesCS3B01G357900	chr5D	95.322	171	6	2	4426	4594	454729765	454729595	2.920000e-68	270.0
96	TraesCS3B01G357900	chr5D	88.079	151	14	3	2005	2152	563969914	563969765	6.540000e-40	176.0
97	TraesCS3B01G357900	chr5D	86.047	172	10	3	4242	4413	63781728	63781885	8.470000e-39	172.0
98	TraesCS3B01G357900	chr6D	88.235	1071	94	11	3205	4244	225662995	225661926	0.000000e+00	1251.0
99	TraesCS3B01G357900	chr6D	91.413	757	49	9	1	742	380600177	380599422	0.000000e+00	1024.0
100	TraesCS3B01G357900	chr6D	85.465	688	80	14	3552	4224	41523701	41524383	0.000000e+00	699.0
101	TraesCS3B01G357900	chr6D	84.502	613	71	16	877	1475	467815803	467815201	9.180000e-163	584.0
102	TraesCS3B01G357900	chr6D	88.914	451	47	3	5902	6351	368970055	368970503	2.590000e-153	553.0
103	TraesCS3B01G357900	chr6D	90.127	314	25	4	4590	4903	225661655	225661348	2.760000e-108	403.0
104	TraesCS3B01G357900	chr6D	96.364	165	5	1	4429	4592	8674490	8674654	2.920000e-68	270.0
105	TraesCS3B01G357900	chr6D	94.350	177	7	3	4416	4591	15354544	15354718	1.050000e-67	268.0
106	TraesCS3B01G357900	chr6D	87.029	239	15	8	3205	3427	420961403	420961165	8.170000e-64	255.0
107	TraesCS3B01G357900	chr6D	89.231	195	15	3	4242	4430	225661848	225661654	8.230000e-59	239.0
108	TraesCS3B01G357900	chr6D	91.964	112	8	1	3422	3532	41523525	41523636	8.530000e-34	156.0
109	TraesCS3B01G357900	chr4A	90.036	843	64	11	1	827	493271007	493270169	0.000000e+00	1074.0
110	TraesCS3B01G357900	chr4A	98.171	164	2	1	4429	4591	15911919	15912082	1.040000e-72	285.0
111	TraesCS3B01G357900	chr4A	96.000	175	5	2	4422	4594	93926815	93926641	3.750000e-72	283.0
112	TraesCS3B01G357900	chr4A	93.956	182	9	2	4412	4591	717299663	717299482	2.260000e-69	274.0
113	TraesCS3B01G357900	chr2B	90.545	825	55	19	1	804	43956500	43957322	0.000000e+00	1070.0
114	TraesCS3B01G357900	chr2B	98.077	52	0	1	826	877	737205721	737205671	8.770000e-14	89.8
115	TraesCS3B01G357900	chr5A	89.929	844	63	12	1	827	671853325	671854163	0.000000e+00	1068.0
116	TraesCS3B01G357900	chr5A	95.128	390	18	1	2248	2637	415814962	415814574	1.170000e-171	614.0
117	TraesCS3B01G357900	chr5A	92.953	298	20	1	5607	5903	446281654	446281357	3.520000e-117	433.0
118	TraesCS3B01G357900	chr5A	94.505	182	8	2	4413	4592	693314768	693314949	4.850000e-71	279.0
119	TraesCS3B01G357900	chr5A	92.683	82	6	0	2152	2233	427829161	427829080	1.120000e-22	119.0
120	TraesCS3B01G357900	chr7D	91.720	785	38	11	2960	3721	292420409	292421189	0.000000e+00	1064.0
121	TraesCS3B01G357900	chr7D	91.788	755	48	11	1	742	7981342	7980589	0.000000e+00	1038.0
122	TraesCS3B01G357900	chr7D	88.978	499	30	5	924	1422	292418768	292419241	1.520000e-165	593.0
123	TraesCS3B01G357900	chr7D	90.244	451	43	1	5902	6351	507339735	507340185	7.090000e-164	588.0
124	TraesCS3B01G357900	chr7D	88.938	452	47	3	5902	6351	494370898	494371348	7.190000e-154	555.0
125	TraesCS3B01G357900	chr7D	88.914	451	49	1	5902	6351	507404231	507404681	7.190000e-154	555.0
126	TraesCS3B01G357900	chr7D	88.470	451	51	1	5902	6351	537715931	537716381	1.560000e-150	544.0
127	TraesCS3B01G357900	chr7D	94.086	186	9	1	644	827	26670279	26670094	1.350000e-71	281.0
128	TraesCS3B01G357900	chr7D	94.086	186	9	1	644	827	613746700	613746885	1.350000e-71	281.0
129	TraesCS3B01G357900	chr7D	93.548	186	10	1	644	827	40630786	40630601	6.270000e-70	276.0
130	TraesCS3B01G357900	chr7D	89.773	88	9	0	2151	2238	404156004	404156091	5.200000e-21	113.0
131	TraesCS3B01G357900	chr7B	89.943	696	57	12	1	694	680511215	680511899	0.000000e+00	885.0
132	TraesCS3B01G357900	chr7B	96.087	230	8	1	1266	1495	644284500	644284728	2.160000e-99	374.0
133	TraesCS3B01G357900	chr7B	92.857	84	6	0	2150	2233	712722348	712722265	8.650000e-24	122.0
134	TraesCS3B01G357900	chr7B	96.154	52	1	1	826	877	123706668	123706718	4.080000e-12	84.2
135	TraesCS3B01G357900	chr7B	94.545	55	2	1	823	877	123706718	123706771	4.080000e-12	84.2
136	TraesCS3B01G357900	chr5B	88.126	699	66	16	1	694	385242271	385242957	0.000000e+00	815.0
137	TraesCS3B01G357900	chr3D	89.655	580	49	9	3205	3779	8354279	8353706	0.000000e+00	728.0
138	TraesCS3B01G357900	chr3D	88.721	594	41	5	3205	3772	34546194	34546787	0.000000e+00	702.0
139	TraesCS3B01G357900	chr3D	88.742	453	48	3	5902	6351	134293035	134292583	9.310000e-153	551.0
140	TraesCS3B01G357900	chr3D	88.692	451	50	1	5902	6351	504375922	504376372	3.350000e-152	549.0
141	TraesCS3B01G357900	chr3D	93.311	299	19	1	5605	5902	348487979	348488277	2.100000e-119	440.0
142	TraesCS3B01G357900	chr3D	95.882	170	6	1	4427	4595	5800081	5800250	2.260000e-69	274.0
143	TraesCS3B01G357900	chr3D	93.514	185	8	4	4413	4594	214436898	214436715	8.110000e-69	272.0
144	TraesCS3B01G357900	chr3D	93.855	179	9	2	4414	4591	23085022	23084845	1.050000e-67	268.0
145	TraesCS3B01G357900	chr3D	93.407	182	9	2	4429	4609	336588162	336587983	3.770000e-67	267.0
146	TraesCS3B01G357900	chr1D	91.667	372	25	3	1619	1987	25954045	25953677	1.580000e-140	510.0
147	TraesCS3B01G357900	chr1D	94.932	296	14	1	5607	5901	265139859	265139564	4.490000e-126	462.0
148	TraesCS3B01G357900	chr1D	93.688	301	18	1	5605	5904	407155308	407155608	3.490000e-122	449.0
149	TraesCS3B01G357900	chr1D	86.339	366	24	4	3380	3721	2853767	2854130	6.010000e-100	375.0
150	TraesCS3B01G357900	chr1D	95.376	173	6	2	4425	4595	310247097	310246925	2.260000e-69	274.0
151	TraesCS3B01G357900	chr1D	94.737	171	8	1	4427	4596	490423318	490423148	1.360000e-66	265.0
152	TraesCS3B01G357900	chrUn	96.337	273	10	0	1266	1538	21461973	21461701	3.490000e-122	449.0
153	TraesCS3B01G357900	chrUn	95.906	171	5	2	4423	4591	36763661	36763831	6.270000e-70	276.0
154	TraesCS3B01G357900	chrUn	95.906	171	5	2	4423	4591	36800860	36801030	6.270000e-70	276.0
155	TraesCS3B01G357900	chrUn	96.407	167	5	1	4427	4592	95258138	95257972	2.260000e-69	274.0
156	TraesCS3B01G357900	chrUn	96.341	164	5	1	4429	4591	34166996	34166833	1.050000e-67	268.0
157	TraesCS3B01G357900	chrUn	96.341	164	5	1	4429	4591	49324360	49324523	1.050000e-67	268.0
158	TraesCS3B01G357900	chrUn	96.341	164	5	1	4429	4591	83351072	83351235	1.050000e-67	268.0
159	TraesCS3B01G357900	chrUn	95.783	166	6	1	4427	4591	320685800	320685965	3.770000e-67	267.0
160	TraesCS3B01G357900	chrUn	95.758	165	6	1	4429	4592	18805348	18805184	1.360000e-66	265.0
161	TraesCS3B01G357900	chrUn	95.238	168	6	2	4429	4594	75274365	75274532	1.360000e-66	265.0
162	TraesCS3B01G357900	chrUn	96.970	99	3	0	3881	3979	21461698	21461600	3.940000e-37	167.0
163	TraesCS3B01G357900	chr4D	92.929	297	20	1	5607	5902	382844834	382844538	1.260000e-116	431.0
164	TraesCS3B01G357900	chr4D	94.286	175	8	2	4419	4591	420144052	420143878	3.770000e-67	267.0
165	TraesCS3B01G357900	chr4D	92.778	180	11	2	4416	4594	67327660	67327482	6.320000e-65	259.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G357900	chr3B	569595735	569602085	6350	False	11729.000000	11729	100.000000	1	6351	1	chr3B.!!$F2	6350
1	TraesCS3B01G357900	chr3B	784573089	784575162	2073	True	1363.500000	1399	90.625000	1980	4205	2	chr3B.!!$R2	2225
2	TraesCS3B01G357900	chr3B	546382503	546383159	656	True	850.000000	850	90.288000	1	647	1	chr3B.!!$R1	646
3	TraesCS3B01G357900	chr2D	229310596	229315624	5028	False	2201.333333	4728	91.171667	823	5876	3	chr2D.!!$F4	5053
4	TraesCS3B01G357900	chr2D	588835798	588837110	1312	False	1572.000000	1572	88.550000	4590	5902	1	chr2D.!!$F2	1312
5	TraesCS3B01G357900	chr2D	72813640	72814319	679	False	815.000000	815	88.235000	1	694	1	chr2D.!!$F1	693
6	TraesCS3B01G357900	chr2D	65813215	65814180	965	False	530.000000	854	87.650000	3559	4430	2	chr2D.!!$F3	871
7	TraesCS3B01G357900	chr1B	632750546	632756361	5815	False	3106.666667	4338	95.373000	1	5903	3	chr1B.!!$F3	5902
8	TraesCS3B01G357900	chr3A	295946315	295950724	4409	True	2059.666667	2704	92.783667	1505	5902	3	chr3A.!!$R3	4397
9	TraesCS3B01G357900	chr3A	499507403	499508174	771	True	981.000000	981	89.547000	1	789	1	chr3A.!!$R2	788
10	TraesCS3B01G357900	chr7A	690659516	690661083	1567	False	2462.000000	2462	95.032000	1505	3071	1	chr7A.!!$F2	1566
11	TraesCS3B01G357900	chr7A	627553310	627553908	598	True	636.000000	636	86.522000	3205	3779	1	chr7A.!!$R5	574
12	TraesCS3B01G357900	chr4B	342967221	342969376	2155	True	1360.500000	1760	92.969000	1369	4244	2	chr4B.!!$R2	2875
13	TraesCS3B01G357900	chr4B	186426830	186427458	628	False	966.000000	966	94.595000	3809	4430	1	chr4B.!!$F1	621
14	TraesCS3B01G357900	chr6B	713226520	713228549	2029	True	1014.333333	1591	93.790000	2668	4930	3	chr6B.!!$R3	2262
15	TraesCS3B01G357900	chr6B	302278968	302279596	628	False	966.000000	966	94.595000	3809	4430	1	chr6B.!!$F1	621
16	TraesCS3B01G357900	chr6B	575572902	575574537	1635	True	922.000000	1707	90.795500	1881	4244	2	chr6B.!!$R2	2363
17	TraesCS3B01G357900	chr6A	463742414	463745105	2691	False	1361.666667	1613	94.280000	2668	5588	3	chr6A.!!$F6	2920
18	TraesCS3B01G357900	chr6A	47590341	47592114	1773	True	1237.500000	1509	92.548000	3809	5736	2	chr6A.!!$R4	1927
19	TraesCS3B01G357900	chr6A	4926512	4927849	1337	True	718.000000	1225	87.582000	3205	4430	2	chr6A.!!$R3	1225
20	TraesCS3B01G357900	chr6A	51951258	51951877	619	False	529.000000	529	82.515000	3588	4224	1	chr6A.!!$F1	636
21	TraesCS3B01G357900	chr6A	613926799	613927307	508	False	305.000000	305	78.439000	920	1436	1	chr6A.!!$F5	516
22	TraesCS3B01G357900	chr1A	232831153	232832466	1313	False	1517.000000	1517	87.807000	4590	5902	1	chr1A.!!$F3	1312
23	TraesCS3B01G357900	chr1A	577671901	577674751	2850	True	1014.750000	1613	94.462500	2668	5588	4	chr1A.!!$R6	2920
24	TraesCS3B01G357900	chr2A	94385937	94388626	2689	True	1346.000000	1596	93.975333	2668	5588	3	chr2A.!!$R1	2920
25	TraesCS3B01G357900	chr5D	448352956	448354249	1293	False	1576.000000	1576	88.739000	4590	5902	1	chr5D.!!$F3	1312
26	TraesCS3B01G357900	chr5D	419926904	419927710	806	True	1109.000000	1109	91.822000	1	789	1	chr5D.!!$R3	788
27	TraesCS3B01G357900	chr5D	107314131	107314818	687	True	856.000000	856	89.127000	1	694	1	chr5D.!!$R1	693
28	TraesCS3B01G357900	chr5D	524292261	524292851	590	False	776.000000	776	91.032000	3205	3772	1	chr5D.!!$F4	567
29	TraesCS3B01G357900	chr5D	289582721	289583310	589	True	688.000000	688	88.325000	3205	3772	1	chr5D.!!$R2	567
30	TraesCS3B01G357900	chr6D	380599422	380600177	755	True	1024.000000	1024	91.413000	1	742	1	chr6D.!!$R1	741
31	TraesCS3B01G357900	chr6D	225661348	225662995	1647	True	631.000000	1251	89.197667	3205	4903	3	chr6D.!!$R4	1698
32	TraesCS3B01G357900	chr6D	467815201	467815803	602	True	584.000000	584	84.502000	877	1475	1	chr6D.!!$R3	598
33	TraesCS3B01G357900	chr6D	41523525	41524383	858	False	427.500000	699	88.714500	3422	4224	2	chr6D.!!$F4	802
34	TraesCS3B01G357900	chr4A	493270169	493271007	838	True	1074.000000	1074	90.036000	1	827	1	chr4A.!!$R2	826
35	TraesCS3B01G357900	chr2B	43956500	43957322	822	False	1070.000000	1070	90.545000	1	804	1	chr2B.!!$F1	803
36	TraesCS3B01G357900	chr5A	671853325	671854163	838	False	1068.000000	1068	89.929000	1	827	1	chr5A.!!$F1	826
37	TraesCS3B01G357900	chr7D	7980589	7981342	753	True	1038.000000	1038	91.788000	1	742	1	chr7D.!!$R1	741
38	TraesCS3B01G357900	chr7D	292418768	292421189	2421	False	828.500000	1064	90.349000	924	3721	2	chr7D.!!$F7	2797
39	TraesCS3B01G357900	chr7B	680511215	680511899	684	False	885.000000	885	89.943000	1	694	1	chr7B.!!$F2	693
40	TraesCS3B01G357900	chr5B	385242271	385242957	686	False	815.000000	815	88.126000	1	694	1	chr5B.!!$F1	693
41	TraesCS3B01G357900	chr3D	8353706	8354279	573	True	728.000000	728	89.655000	3205	3779	1	chr3D.!!$R1	574
42	TraesCS3B01G357900	chr3D	34546194	34546787	593	False	702.000000	702	88.721000	3205	3772	1	chr3D.!!$F2	567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
974	1024	0.108329	AATGGAGGCGGTAGACAACG	60.108	55.000	0.00	0.00	0.0	4.10	F
1730	2189	1.064166	CAAGGCATGGACCCAAGATCT	60.064	52.381	0.00	0.00	0.0	2.75	F
2233	2813	0.035458	CATTATGGGACGGAGGGAGC	59.965	60.000	0.00	0.00	0.0	4.70	F
2392	2973	1.841663	CTGTGTGTTGGCGCCAGTAC	61.842	60.000	30.75	29.23	0.0	2.73	F
4315	5394	3.064207	CGTAGGTAAAGCTTGCAAGTCA	58.936	45.455	26.55	7.70	0.0	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2106	2686	2.023673	CAACAGAGCAACAAGGACCAA	58.976	47.619	0.00	0.0	0.00	3.67	R
3475	4248	3.618351	TCGTGTTTACCTTGGGTCAAAA	58.382	40.909	0.00	0.0	37.09	2.44	R
4158	5157	0.179048	CCCTGCGCTTGGTGATGATA	60.179	55.000	9.73	0.0	0.00	2.15	R
4335	5414	1.081840	GTGTGCGCTTCTTTCCAGC	60.082	57.895	9.73	0.0	0.00	4.85	R
5959	7098	0.030235	TACGCATGCACCGTAGCTAG	59.970	55.000	19.57	0.0	39.88	3.42	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
224	230	4.431809	TCTTTGTCAATGTTGTTTGCCAG	58.568	39.130	0.00	0.00	0.00	4.85
233	239	5.886960	ATGTTGTTTGCCAGTCTAAGATC	57.113	39.130	0.00	0.00	0.00	2.75
418	427	1.067846	GTCCATAGGCATATCACGCGA	60.068	52.381	15.93	0.00	0.00	5.87
454	463	0.936764	CGTCGGATGCTTCTGGATCG	60.937	60.000	8.46	7.59	41.21	3.69
470	479	0.677288	ATCGAACGACAACCCTCACA	59.323	50.000	0.00	0.00	0.00	3.58
516	525	1.382695	TTCCCCGATCCACTCCTCC	60.383	63.158	0.00	0.00	0.00	4.30
629	670	2.606519	CGTCCTCTCCCCCAACCA	60.607	66.667	0.00	0.00	0.00	3.67
806	849	1.000486	CGTCTCTCCCTTCCCCTCA	60.000	63.158	0.00	0.00	0.00	3.86
872	915	2.441901	CTCCGCTCAGGCTCCTCT	60.442	66.667	0.00	0.00	40.77	3.69
974	1024	0.108329	AATGGAGGCGGTAGACAACG	60.108	55.000	0.00	0.00	0.00	4.10
983	1039	1.429463	GGTAGACAACGCCAGTTCTG	58.571	55.000	0.00	0.00	38.79	3.02
1357	1431	2.093869	GGTCGAGCACCACCATACTAAA	60.094	50.000	10.30	0.00	45.98	1.85
1519	1593	5.907945	GCGACTCTGTTTTTAAGTCCTTTTC	59.092	40.000	0.00	0.00	36.84	2.29
1539	1613	7.148069	CCTTTTCCACATTTATAAGACCCTGTC	60.148	40.741	0.00	0.00	0.00	3.51
1730	2189	1.064166	CAAGGCATGGACCCAAGATCT	60.064	52.381	0.00	0.00	0.00	2.75
2002	2582	3.446516	GTGGAACCCAGTATAGAGTTCGT	59.553	47.826	0.00	0.00	39.58	3.85
2233	2813	0.035458	CATTATGGGACGGAGGGAGC	59.965	60.000	0.00	0.00	0.00	4.70
2392	2973	1.841663	CTGTGTGTTGGCGCCAGTAC	61.842	60.000	30.75	29.23	0.00	2.73
2615	3227	3.871006	CGTATTACACACACATGCTCCAT	59.129	43.478	0.00	0.00	0.00	3.41
2817	3464	5.992829	TCCACAATATGTAAACGTGTCAACT	59.007	36.000	0.00	0.00	0.00	3.16
3163	3811	6.855836	TGATTATCTTGGTGAGCATTTGTTC	58.144	36.000	0.00	0.00	0.00	3.18
3188	3836	8.264347	TCAATAACTGGAATACATTGTCTGCTA	58.736	33.333	0.00	0.00	0.00	3.49
3235	4008	6.173339	ACTATTACAAATGTCTGTGAGGGTG	58.827	40.000	0.00	0.00	0.00	4.61
3475	4248	3.839490	CTCTGATTGAGCTCCCCATAGAT	59.161	47.826	12.15	0.00	35.84	1.98
3597	4419	4.397420	ACTGTTTGTGAATGCCTGTGATA	58.603	39.130	0.00	0.00	0.00	2.15
3659	4482	4.341806	TCATTGTCTGGTTGTTCTTGCAAT	59.658	37.500	0.00	0.00	0.00	3.56
4070	5068	6.406177	CCTTGCTATTTATGTTGGCTGACATT	60.406	38.462	11.28	0.00	40.54	2.71
4085	5084	4.083324	GCTGACATTACTTGCTTGTTGCTA	60.083	41.667	0.00	0.00	43.37	3.49
4158	5157	3.630013	TGCTTCTCCAGTGCCGCT	61.630	61.111	0.00	0.00	0.00	5.52
4257	5336	4.109050	CTGTATGCTCGGTTTCTTCTCTC	58.891	47.826	0.00	0.00	0.00	3.20
4315	5394	3.064207	CGTAGGTAAAGCTTGCAAGTCA	58.936	45.455	26.55	7.70	0.00	3.41
4335	5414	1.392589	ATGGCAGTTAGAATTGGCGG	58.607	50.000	6.80	0.00	42.82	6.13
4358	5437	1.337823	GGAAAGAAGCGCACACCTAGA	60.338	52.381	11.47	0.00	0.00	2.43
4408	5490	5.009610	GCATTTTTCTTCTAGTGTGGTCCAA	59.990	40.000	0.00	0.00	0.00	3.53
4428	5516	4.262292	CCAAGCCAGCATGCATACATTTAT	60.262	41.667	21.98	0.00	32.87	1.40
4429	5517	5.047872	CCAAGCCAGCATGCATACATTTATA	60.048	40.000	21.98	0.00	32.87	0.98
4430	5518	5.633830	AGCCAGCATGCATACATTTATAC	57.366	39.130	21.98	0.00	32.87	1.47
4431	5519	5.319453	AGCCAGCATGCATACATTTATACT	58.681	37.500	21.98	0.00	32.87	2.12
4432	5520	5.413833	AGCCAGCATGCATACATTTATACTC	59.586	40.000	21.98	0.00	32.87	2.59
4433	5521	5.392380	GCCAGCATGCATACATTTATACTCC	60.392	44.000	21.98	0.00	32.87	3.85
4434	5522	5.124457	CCAGCATGCATACATTTATACTCCC	59.876	44.000	21.98	0.00	32.87	4.30
4435	5523	5.942236	CAGCATGCATACATTTATACTCCCT	59.058	40.000	21.98	0.00	32.87	4.20
4436	5524	6.093219	CAGCATGCATACATTTATACTCCCTC	59.907	42.308	21.98	0.00	32.87	4.30
4437	5525	5.355350	GCATGCATACATTTATACTCCCTCC	59.645	44.000	14.21	0.00	32.87	4.30
4438	5526	5.147330	TGCATACATTTATACTCCCTCCG	57.853	43.478	0.00	0.00	0.00	4.63
4439	5527	4.591498	TGCATACATTTATACTCCCTCCGT	59.409	41.667	0.00	0.00	0.00	4.69
4440	5528	5.071250	TGCATACATTTATACTCCCTCCGTT	59.929	40.000	0.00	0.00	0.00	4.44
4441	5529	5.995897	GCATACATTTATACTCCCTCCGTTT	59.004	40.000	0.00	0.00	0.00	3.60
4442	5530	6.485648	GCATACATTTATACTCCCTCCGTTTT	59.514	38.462	0.00	0.00	0.00	2.43
4443	5531	7.658575	GCATACATTTATACTCCCTCCGTTTTA	59.341	37.037	0.00	0.00	0.00	1.52
4444	5532	9.550406	CATACATTTATACTCCCTCCGTTTTAA	57.450	33.333	0.00	0.00	0.00	1.52
4451	5539	9.603921	TTATACTCCCTCCGTTTTAAATACTTG	57.396	33.333	0.00	0.00	0.00	3.16
4452	5540	5.872963	ACTCCCTCCGTTTTAAATACTTGT	58.127	37.500	0.00	0.00	0.00	3.16
4453	5541	5.936372	ACTCCCTCCGTTTTAAATACTTGTC	59.064	40.000	0.00	0.00	0.00	3.18
4454	5542	6.117975	TCCCTCCGTTTTAAATACTTGTCT	57.882	37.500	0.00	0.00	0.00	3.41
4455	5543	6.536447	TCCCTCCGTTTTAAATACTTGTCTT	58.464	36.000	0.00	0.00	0.00	3.01
4456	5544	6.999871	TCCCTCCGTTTTAAATACTTGTCTTT	59.000	34.615	0.00	0.00	0.00	2.52
4457	5545	7.173735	TCCCTCCGTTTTAAATACTTGTCTTTC	59.826	37.037	0.00	0.00	0.00	2.62
4458	5546	7.174426	CCCTCCGTTTTAAATACTTGTCTTTCT	59.826	37.037	0.00	0.00	0.00	2.52
4459	5547	9.211485	CCTCCGTTTTAAATACTTGTCTTTCTA	57.789	33.333	0.00	0.00	0.00	2.10
4461	5549	9.211485	TCCGTTTTAAATACTTGTCTTTCTAGG	57.789	33.333	0.00	0.00	0.00	3.02
4462	5550	7.961283	CCGTTTTAAATACTTGTCTTTCTAGGC	59.039	37.037	0.00	0.00	0.00	3.93
4463	5551	8.500773	CGTTTTAAATACTTGTCTTTCTAGGCA	58.499	33.333	0.00	0.00	33.22	4.75
4468	5556	8.635765	AAATACTTGTCTTTCTAGGCATTTCA	57.364	30.769	0.00	0.00	35.56	2.69
4469	5557	8.635765	AATACTTGTCTTTCTAGGCATTTCAA	57.364	30.769	0.00	0.00	35.56	2.69
4470	5558	6.319141	ACTTGTCTTTCTAGGCATTTCAAC	57.681	37.500	0.00	0.00	35.56	3.18
4471	5559	5.827797	ACTTGTCTTTCTAGGCATTTCAACA	59.172	36.000	0.00	0.00	35.56	3.33
4472	5560	6.321181	ACTTGTCTTTCTAGGCATTTCAACAA	59.679	34.615	0.00	0.00	35.56	2.83
4473	5561	6.317789	TGTCTTTCTAGGCATTTCAACAAG	57.682	37.500	0.00	0.00	29.10	3.16
4474	5562	5.827797	TGTCTTTCTAGGCATTTCAACAAGT	59.172	36.000	0.00	0.00	29.10	3.16
4475	5563	6.145535	GTCTTTCTAGGCATTTCAACAAGTG	58.854	40.000	0.00	0.00	0.00	3.16
4476	5564	6.017109	GTCTTTCTAGGCATTTCAACAAGTGA	60.017	38.462	0.00	0.00	0.00	3.41
4477	5565	5.689383	TTCTAGGCATTTCAACAAGTGAC	57.311	39.130	0.00	0.00	35.39	3.67
4478	5566	4.973168	TCTAGGCATTTCAACAAGTGACT	58.027	39.130	0.00	0.00	40.60	3.41
4479	5567	6.109156	TCTAGGCATTTCAACAAGTGACTA	57.891	37.500	0.00	0.00	38.51	2.59
4480	5568	5.932303	TCTAGGCATTTCAACAAGTGACTAC	59.068	40.000	0.00	0.00	38.51	2.73
4481	5569	4.460263	AGGCATTTCAACAAGTGACTACA	58.540	39.130	0.00	0.00	35.84	2.74
4482	5570	5.072741	AGGCATTTCAACAAGTGACTACAT	58.927	37.500	0.00	0.00	35.84	2.29
4483	5571	6.237901	AGGCATTTCAACAAGTGACTACATA	58.762	36.000	0.00	0.00	35.84	2.29
4484	5572	6.149474	AGGCATTTCAACAAGTGACTACATAC	59.851	38.462	0.00	0.00	35.84	2.39
4485	5573	6.015504	GCATTTCAACAAGTGACTACATACG	58.984	40.000	0.00	0.00	35.39	3.06
4486	5574	6.534059	CATTTCAACAAGTGACTACATACGG	58.466	40.000	0.00	0.00	35.39	4.02
4487	5575	5.456548	TTCAACAAGTGACTACATACGGA	57.543	39.130	0.00	0.00	35.39	4.69
4488	5576	5.055642	TCAACAAGTGACTACATACGGAG	57.944	43.478	0.00	0.00	0.00	4.63
4489	5577	3.505464	ACAAGTGACTACATACGGAGC	57.495	47.619	0.00	0.00	0.00	4.70
4490	5578	2.823747	ACAAGTGACTACATACGGAGCA	59.176	45.455	0.00	0.00	0.00	4.26
4491	5579	3.257375	ACAAGTGACTACATACGGAGCAA	59.743	43.478	0.00	0.00	0.00	3.91
4492	5580	4.242475	CAAGTGACTACATACGGAGCAAA	58.758	43.478	0.00	0.00	0.00	3.68
4493	5581	4.530710	AGTGACTACATACGGAGCAAAA	57.469	40.909	0.00	0.00	0.00	2.44
4494	5582	5.086104	AGTGACTACATACGGAGCAAAAT	57.914	39.130	0.00	0.00	0.00	1.82
4495	5583	4.870426	AGTGACTACATACGGAGCAAAATG	59.130	41.667	0.00	0.00	0.00	2.32
4496	5584	4.868171	GTGACTACATACGGAGCAAAATGA	59.132	41.667	0.00	0.00	0.00	2.57
4497	5585	5.005779	GTGACTACATACGGAGCAAAATGAG	59.994	44.000	0.00	0.00	0.00	2.90
4498	5586	5.086104	ACTACATACGGAGCAAAATGAGT	57.914	39.130	0.00	0.00	0.00	3.41
4499	5587	4.870426	ACTACATACGGAGCAAAATGAGTG	59.130	41.667	0.00	0.00	0.00	3.51
4500	5588	3.937814	ACATACGGAGCAAAATGAGTGA	58.062	40.909	0.00	0.00	0.00	3.41
4501	5589	4.323417	ACATACGGAGCAAAATGAGTGAA	58.677	39.130	0.00	0.00	0.00	3.18
4502	5590	4.943705	ACATACGGAGCAAAATGAGTGAAT	59.056	37.500	0.00	0.00	0.00	2.57
4503	5591	5.065218	ACATACGGAGCAAAATGAGTGAATC	59.935	40.000	0.00	0.00	0.00	2.52
4504	5592	3.679389	ACGGAGCAAAATGAGTGAATCT	58.321	40.909	0.00	0.00	0.00	2.40
4505	5593	4.832248	ACGGAGCAAAATGAGTGAATCTA	58.168	39.130	0.00	0.00	0.00	1.98
4506	5594	4.631813	ACGGAGCAAAATGAGTGAATCTAC	59.368	41.667	0.00	0.00	0.00	2.59
4507	5595	4.631377	CGGAGCAAAATGAGTGAATCTACA	59.369	41.667	0.00	0.00	0.00	2.74
4508	5596	5.446473	CGGAGCAAAATGAGTGAATCTACAC	60.446	44.000	0.00	0.00	40.60	2.90
4551	5639	7.342769	ACATCCGTATGTAGTAGTCATTTGA	57.657	36.000	0.00	0.00	44.66	2.69
4552	5640	7.778083	ACATCCGTATGTAGTAGTCATTTGAA	58.222	34.615	0.00	0.00	44.66	2.69
4553	5641	8.255206	ACATCCGTATGTAGTAGTCATTTGAAA	58.745	33.333	0.00	0.00	44.66	2.69
4554	5642	9.261180	CATCCGTATGTAGTAGTCATTTGAAAT	57.739	33.333	0.00	0.00	0.00	2.17
4555	5643	8.642908	TCCGTATGTAGTAGTCATTTGAAATG	57.357	34.615	11.54	11.54	0.00	2.32
4556	5644	8.255206	TCCGTATGTAGTAGTCATTTGAAATGT	58.745	33.333	16.62	2.38	0.00	2.71
4557	5645	8.540492	CCGTATGTAGTAGTCATTTGAAATGTC	58.460	37.037	16.62	11.74	0.00	3.06
4558	5646	9.302345	CGTATGTAGTAGTCATTTGAAATGTCT	57.698	33.333	18.62	18.62	0.00	3.41
4582	5670	9.595823	TCTAGAAAGACAATTATTTAGGAACGG	57.404	33.333	0.00	0.00	0.00	4.44
4583	5671	7.625828	AGAAAGACAATTATTTAGGAACGGG	57.374	36.000	0.00	0.00	0.00	5.28
4584	5672	6.602009	AGAAAGACAATTATTTAGGAACGGGG	59.398	38.462	0.00	0.00	0.00	5.73
4585	5673	4.788679	AGACAATTATTTAGGAACGGGGG	58.211	43.478	0.00	0.00	0.00	5.40
4643	5731	4.265085	CACATGACAAACAAAAGTCGTTGG	59.735	41.667	0.00	0.00	37.58	3.77
4715	5805	0.729116	AATTGCTGATCAACTCGCCG	59.271	50.000	0.00	0.00	37.53	6.46
4998	6101	5.413969	AGTGACGGTTTTGCTAGTAAAAC	57.586	39.130	30.11	30.11	45.32	2.43
5025	6128	8.833231	ATACCAGCACTTACATTGTATACATC	57.167	34.615	6.36	0.00	0.00	3.06
5027	6130	5.983118	CCAGCACTTACATTGTATACATCGA	59.017	40.000	6.36	0.00	0.00	3.59
5126	6229	1.004440	GCAGGCGACAAGAAGAGGT	60.004	57.895	0.00	0.00	0.00	3.85
5137	6240	3.335484	ACAAGAAGAGGTAGAGGAGGTCT	59.665	47.826	0.00	0.00	39.59	3.85
5221	6324	2.236146	CTGTGCCACCCTTGTGTATCTA	59.764	50.000	0.00	0.00	41.09	1.98
5563	6668	3.850173	AGGCCCATGTAGGTAGAGAAAAA	59.150	43.478	0.00	0.00	34.66	1.94
5613	6737	5.196341	TGTATTAGAGCGTCGAATTGGAT	57.804	39.130	0.00	0.00	0.00	3.41
5681	6819	4.090588	TCGGATCCAACGTGGCCC	62.091	66.667	13.41	0.00	37.47	5.80
5785	6923	5.937540	TCGCAGAGAAGGTCATTAATTTCAA	59.062	36.000	1.54	0.00	0.00	2.69
5833	6972	6.090483	TCTGTTTTTGTCACAAAAAGGTCA	57.910	33.333	25.49	18.95	31.05	4.02
5903	7042	8.454106	GCAAGTTGACATATTTCTTGTAGTGAT	58.546	33.333	7.16	0.00	38.09	3.06
5904	7043	9.764870	CAAGTTGACATATTTCTTGTAGTGATG	57.235	33.333	0.00	0.00	33.27	3.07
5905	7044	7.978982	AGTTGACATATTTCTTGTAGTGATGC	58.021	34.615	0.00	0.00	0.00	3.91
5906	7045	6.588348	TGACATATTTCTTGTAGTGATGCG	57.412	37.500	0.00	0.00	0.00	4.73
5907	7046	6.106003	TGACATATTTCTTGTAGTGATGCGT	58.894	36.000	0.00	0.00	0.00	5.24
5908	7047	7.262048	TGACATATTTCTTGTAGTGATGCGTA	58.738	34.615	0.00	0.00	0.00	4.42
5909	7048	7.762159	TGACATATTTCTTGTAGTGATGCGTAA	59.238	33.333	0.00	0.00	0.00	3.18
5910	7049	8.662781	ACATATTTCTTGTAGTGATGCGTAAT	57.337	30.769	0.00	0.00	0.00	1.89
5911	7050	9.758651	ACATATTTCTTGTAGTGATGCGTAATA	57.241	29.630	0.00	0.00	0.00	0.98
5913	7052	6.897259	TTTCTTGTAGTGATGCGTAATACC	57.103	37.500	0.00	0.00	0.00	2.73
5914	7053	4.940463	TCTTGTAGTGATGCGTAATACCC	58.060	43.478	0.00	0.00	0.00	3.69
5915	7054	4.647853	TCTTGTAGTGATGCGTAATACCCT	59.352	41.667	0.00	0.00	0.00	4.34
5916	7055	5.829391	TCTTGTAGTGATGCGTAATACCCTA	59.171	40.000	0.00	0.00	0.00	3.53
5917	7056	5.700722	TGTAGTGATGCGTAATACCCTAG	57.299	43.478	0.00	0.00	0.00	3.02
5918	7057	5.135383	TGTAGTGATGCGTAATACCCTAGT	58.865	41.667	0.00	0.00	0.00	2.57
5919	7058	4.850347	AGTGATGCGTAATACCCTAGTC	57.150	45.455	0.00	0.00	0.00	2.59
5920	7059	3.573110	AGTGATGCGTAATACCCTAGTCC	59.427	47.826	0.00	0.00	0.00	3.85
5921	7060	3.573110	GTGATGCGTAATACCCTAGTCCT	59.427	47.826	0.00	0.00	0.00	3.85
5922	7061	3.572682	TGATGCGTAATACCCTAGTCCTG	59.427	47.826	0.00	0.00	0.00	3.86
5923	7062	1.684983	TGCGTAATACCCTAGTCCTGC	59.315	52.381	0.00	0.00	0.00	4.85
5924	7063	1.962100	GCGTAATACCCTAGTCCTGCT	59.038	52.381	0.00	0.00	0.00	4.24
5925	7064	2.364647	GCGTAATACCCTAGTCCTGCTT	59.635	50.000	0.00	0.00	0.00	3.91
5926	7065	3.181468	GCGTAATACCCTAGTCCTGCTTT	60.181	47.826	0.00	0.00	0.00	3.51
5927	7066	4.369182	CGTAATACCCTAGTCCTGCTTTG	58.631	47.826	0.00	0.00	0.00	2.77
5928	7067	3.283259	AATACCCTAGTCCTGCTTTGC	57.717	47.619	0.00	0.00	0.00	3.68
5929	7068	1.952621	TACCCTAGTCCTGCTTTGCT	58.047	50.000	0.00	0.00	0.00	3.91
5930	7069	1.952621	ACCCTAGTCCTGCTTTGCTA	58.047	50.000	0.00	0.00	0.00	3.49
5931	7070	2.482494	ACCCTAGTCCTGCTTTGCTAT	58.518	47.619	0.00	0.00	0.00	2.97
5932	7071	3.654273	ACCCTAGTCCTGCTTTGCTATA	58.346	45.455	0.00	0.00	0.00	1.31
5933	7072	4.235372	ACCCTAGTCCTGCTTTGCTATAT	58.765	43.478	0.00	0.00	0.00	0.86
5934	7073	5.403512	ACCCTAGTCCTGCTTTGCTATATA	58.596	41.667	0.00	0.00	0.00	0.86
5935	7074	6.026186	ACCCTAGTCCTGCTTTGCTATATAT	58.974	40.000	0.00	0.00	0.00	0.86
5936	7075	6.502158	ACCCTAGTCCTGCTTTGCTATATATT	59.498	38.462	0.00	0.00	0.00	1.28
5937	7076	7.017651	ACCCTAGTCCTGCTTTGCTATATATTT	59.982	37.037	0.00	0.00	0.00	1.40
5938	7077	7.335422	CCCTAGTCCTGCTTTGCTATATATTTG	59.665	40.741	0.00	0.00	0.00	2.32
5939	7078	8.097038	CCTAGTCCTGCTTTGCTATATATTTGA	58.903	37.037	0.00	0.00	0.00	2.69
5940	7079	7.976135	AGTCCTGCTTTGCTATATATTTGAG	57.024	36.000	0.00	0.00	0.00	3.02
5941	7080	7.512992	AGTCCTGCTTTGCTATATATTTGAGT	58.487	34.615	0.00	0.00	0.00	3.41
5942	7081	7.443575	AGTCCTGCTTTGCTATATATTTGAGTG	59.556	37.037	0.00	0.00	0.00	3.51
5943	7082	7.227512	GTCCTGCTTTGCTATATATTTGAGTGT	59.772	37.037	0.00	0.00	0.00	3.55
5944	7083	7.775093	TCCTGCTTTGCTATATATTTGAGTGTT	59.225	33.333	0.00	0.00	0.00	3.32
5945	7084	8.072567	CCTGCTTTGCTATATATTTGAGTGTTC	58.927	37.037	0.00	0.00	0.00	3.18
5946	7085	8.737168	TGCTTTGCTATATATTTGAGTGTTCT	57.263	30.769	0.00	0.00	0.00	3.01
5947	7086	9.177608	TGCTTTGCTATATATTTGAGTGTTCTT	57.822	29.630	0.00	0.00	0.00	2.52
5948	7087	9.443283	GCTTTGCTATATATTTGAGTGTTCTTG	57.557	33.333	0.00	0.00	0.00	3.02
5951	7090	9.890629	TTGCTATATATTTGAGTGTTCTTGAGT	57.109	29.630	0.00	0.00	0.00	3.41
5952	7091	9.890629	TGCTATATATTTGAGTGTTCTTGAGTT	57.109	29.630	0.00	0.00	0.00	3.01
5957	7096	8.908786	ATATTTGAGTGTTCTTGAGTTCTTGA	57.091	30.769	0.00	0.00	0.00	3.02
5958	7097	7.630242	ATTTGAGTGTTCTTGAGTTCTTGAA	57.370	32.000	0.00	0.00	0.00	2.69
5959	7098	6.422776	TTGAGTGTTCTTGAGTTCTTGAAC	57.577	37.500	5.44	5.44	39.18	3.18
5960	7099	5.734720	TGAGTGTTCTTGAGTTCTTGAACT	58.265	37.500	14.94	14.94	39.38	3.01
5961	7100	6.873997	TGAGTGTTCTTGAGTTCTTGAACTA	58.126	36.000	14.99	1.60	39.38	2.24
5962	7101	6.980978	TGAGTGTTCTTGAGTTCTTGAACTAG	59.019	38.462	14.99	10.50	39.38	2.57
5963	7102	5.755861	AGTGTTCTTGAGTTCTTGAACTAGC	59.244	40.000	14.99	5.79	39.38	3.42
5964	7103	5.755861	GTGTTCTTGAGTTCTTGAACTAGCT	59.244	40.000	14.99	0.00	39.38	3.32
5965	7104	6.924060	GTGTTCTTGAGTTCTTGAACTAGCTA	59.076	38.462	14.99	0.00	39.38	3.32
5966	7105	6.924060	TGTTCTTGAGTTCTTGAACTAGCTAC	59.076	38.462	14.99	11.33	39.38	3.58
5967	7106	5.700846	TCTTGAGTTCTTGAACTAGCTACG	58.299	41.667	14.99	3.27	32.22	3.51
5968	7107	4.436242	TGAGTTCTTGAACTAGCTACGG	57.564	45.455	14.99	0.00	32.22	4.02
5969	7108	3.825014	TGAGTTCTTGAACTAGCTACGGT	59.175	43.478	14.99	0.00	32.22	4.83
5970	7109	4.167268	GAGTTCTTGAACTAGCTACGGTG	58.833	47.826	14.99	0.00	32.22	4.94
5971	7110	2.649331	TCTTGAACTAGCTACGGTGC	57.351	50.000	0.00	0.00	0.00	5.01
5972	7111	1.890489	TCTTGAACTAGCTACGGTGCA	59.110	47.619	4.81	0.00	34.99	4.57
5973	7112	2.496070	TCTTGAACTAGCTACGGTGCAT	59.504	45.455	0.00	0.00	34.99	3.96
5974	7113	2.293677	TGAACTAGCTACGGTGCATG	57.706	50.000	0.00	0.00	34.99	4.06
5975	7114	0.931005	GAACTAGCTACGGTGCATGC	59.069	55.000	11.82	11.82	34.99	4.06
5976	7115	0.806102	AACTAGCTACGGTGCATGCG	60.806	55.000	14.09	0.76	34.99	4.73
5977	7116	1.226974	CTAGCTACGGTGCATGCGT	60.227	57.895	14.09	7.60	34.99	5.24
5978	7117	0.030235	CTAGCTACGGTGCATGCGTA	59.970	55.000	14.09	8.41	34.99	4.42
5979	7118	0.030235	TAGCTACGGTGCATGCGTAG	59.970	55.000	20.58	20.58	38.71	3.51
5980	7119	1.518572	GCTACGGTGCATGCGTAGT	60.519	57.895	23.57	19.41	38.18	2.73
5981	7120	1.480219	GCTACGGTGCATGCGTAGTC	61.480	60.000	23.57	15.88	38.18	2.59
5982	7121	0.870307	CTACGGTGCATGCGTAGTCC	60.870	60.000	14.09	9.10	33.20	3.85
5983	7122	1.596895	TACGGTGCATGCGTAGTCCA	61.597	55.000	14.09	0.00	0.00	4.02
5984	7123	1.739929	CGGTGCATGCGTAGTCCAA	60.740	57.895	14.09	0.00	0.00	3.53
5985	7124	1.295357	CGGTGCATGCGTAGTCCAAA	61.295	55.000	14.09	0.00	0.00	3.28
5986	7125	0.878416	GGTGCATGCGTAGTCCAAAA	59.122	50.000	14.09	0.00	0.00	2.44
5987	7126	1.135689	GGTGCATGCGTAGTCCAAAAG	60.136	52.381	14.09	0.00	0.00	2.27
5988	7127	1.804151	GTGCATGCGTAGTCCAAAAGA	59.196	47.619	14.09	0.00	0.00	2.52
5989	7128	2.420022	GTGCATGCGTAGTCCAAAAGAT	59.580	45.455	14.09	0.00	0.00	2.40
5990	7129	2.677836	TGCATGCGTAGTCCAAAAGATC	59.322	45.455	14.09	0.00	0.00	2.75
5991	7130	2.032178	GCATGCGTAGTCCAAAAGATCC	59.968	50.000	0.00	0.00	0.00	3.36
5992	7131	3.270027	CATGCGTAGTCCAAAAGATCCA	58.730	45.455	0.00	0.00	0.00	3.41
5993	7132	3.410631	TGCGTAGTCCAAAAGATCCAA	57.589	42.857	0.00	0.00	0.00	3.53
5994	7133	3.745799	TGCGTAGTCCAAAAGATCCAAA	58.254	40.909	0.00	0.00	0.00	3.28
5995	7134	4.331968	TGCGTAGTCCAAAAGATCCAAAT	58.668	39.130	0.00	0.00	0.00	2.32
5996	7135	4.394920	TGCGTAGTCCAAAAGATCCAAATC	59.605	41.667	0.00	0.00	0.00	2.17
5997	7136	4.201920	GCGTAGTCCAAAAGATCCAAATCC	60.202	45.833	0.00	0.00	31.78	3.01
5998	7137	5.186198	CGTAGTCCAAAAGATCCAAATCCT	58.814	41.667	0.00	0.00	31.78	3.24
5999	7138	5.648092	CGTAGTCCAAAAGATCCAAATCCTT	59.352	40.000	0.00	0.00	31.78	3.36
6000	7139	6.183360	CGTAGTCCAAAAGATCCAAATCCTTC	60.183	42.308	0.00	0.00	31.78	3.46
6001	7140	5.896963	AGTCCAAAAGATCCAAATCCTTCT	58.103	37.500	0.00	0.00	31.78	2.85
6002	7141	6.318112	AGTCCAAAAGATCCAAATCCTTCTT	58.682	36.000	0.00	0.00	31.78	2.52
6003	7142	6.435591	AGTCCAAAAGATCCAAATCCTTCTTC	59.564	38.462	0.00	0.00	31.78	2.87
6004	7143	6.435591	GTCCAAAAGATCCAAATCCTTCTTCT	59.564	38.462	0.00	0.00	31.78	2.85
6005	7144	6.435277	TCCAAAAGATCCAAATCCTTCTTCTG	59.565	38.462	0.00	0.00	31.78	3.02
6006	7145	6.210185	CCAAAAGATCCAAATCCTTCTTCTGT	59.790	38.462	0.00	0.00	31.78	3.41
6007	7146	7.394359	CCAAAAGATCCAAATCCTTCTTCTGTA	59.606	37.037	0.00	0.00	31.78	2.74
6008	7147	7.929941	AAAGATCCAAATCCTTCTTCTGTAC	57.070	36.000	0.00	0.00	31.78	2.90
6009	7148	5.665459	AGATCCAAATCCTTCTTCTGTACG	58.335	41.667	0.00	0.00	31.78	3.67
6010	7149	3.596214	TCCAAATCCTTCTTCTGTACGC	58.404	45.455	0.00	0.00	0.00	4.42
6011	7150	2.678336	CCAAATCCTTCTTCTGTACGCC	59.322	50.000	0.00	0.00	0.00	5.68
6012	7151	3.600388	CAAATCCTTCTTCTGTACGCCT	58.400	45.455	0.00	0.00	0.00	5.52
6013	7152	3.983044	AATCCTTCTTCTGTACGCCTT	57.017	42.857	0.00	0.00	0.00	4.35
6014	7153	2.743636	TCCTTCTTCTGTACGCCTTG	57.256	50.000	0.00	0.00	0.00	3.61
6015	7154	1.275291	TCCTTCTTCTGTACGCCTTGG	59.725	52.381	0.00	0.00	0.00	3.61
6016	7155	1.676014	CCTTCTTCTGTACGCCTTGGG	60.676	57.143	0.00	0.00	0.00	4.12
6017	7156	0.321298	TTCTTCTGTACGCCTTGGGC	60.321	55.000	0.00	0.00	46.75	5.36
6026	7165	3.741325	GCCTTGGGCCTCCTTCTA	58.259	61.111	4.53	0.00	44.06	2.10
6027	7166	2.235570	GCCTTGGGCCTCCTTCTAT	58.764	57.895	4.53	0.00	44.06	1.98
6028	7167	1.435256	GCCTTGGGCCTCCTTCTATA	58.565	55.000	4.53	0.00	44.06	1.31
6029	7168	1.349357	GCCTTGGGCCTCCTTCTATAG	59.651	57.143	4.53	0.00	44.06	1.31
6030	7169	1.981495	CCTTGGGCCTCCTTCTATAGG	59.019	57.143	4.53	0.00	46.27	2.57
6038	7177	4.092116	CCTCCTTCTATAGGCAAAAGGG	57.908	50.000	14.77	8.05	44.37	3.95
6039	7178	3.181439	CCTCCTTCTATAGGCAAAAGGGG	60.181	52.174	14.77	12.39	44.37	4.79
6040	7179	3.459969	CTCCTTCTATAGGCAAAAGGGGT	59.540	47.826	14.77	0.00	44.37	4.95
6041	7180	3.458487	TCCTTCTATAGGCAAAAGGGGTC	59.542	47.826	14.77	0.00	44.37	4.46
6042	7181	3.467803	CTTCTATAGGCAAAAGGGGTCG	58.532	50.000	0.00	0.00	0.00	4.79
6043	7182	1.140252	TCTATAGGCAAAAGGGGTCGC	59.860	52.381	0.00	0.00	0.00	5.19
6044	7183	0.181824	TATAGGCAAAAGGGGTCGCC	59.818	55.000	0.00	0.00	45.23	5.54
6046	7185	3.680786	GGCAAAAGGGGTCGCCAC	61.681	66.667	8.89	0.00	44.25	5.01
6047	7186	2.909965	GCAAAAGGGGTCGCCACA	60.910	61.111	8.89	0.00	0.00	4.17
6048	7187	2.919494	GCAAAAGGGGTCGCCACAG	61.919	63.158	8.89	0.00	0.00	3.66
6049	7188	1.528309	CAAAAGGGGTCGCCACAGT	60.528	57.895	8.89	0.00	0.00	3.55
6050	7189	1.528309	AAAAGGGGTCGCCACAGTG	60.528	57.895	8.89	0.00	0.00	3.66
6051	7190	1.990160	AAAAGGGGTCGCCACAGTGA	61.990	55.000	8.89	0.00	0.00	3.41
6052	7191	1.779061	AAAGGGGTCGCCACAGTGAT	61.779	55.000	8.89	0.00	34.38	3.06
6053	7192	0.907704	AAGGGGTCGCCACAGTGATA	60.908	55.000	8.89	0.00	34.38	2.15
6054	7193	1.153429	GGGGTCGCCACAGTGATAC	60.153	63.158	0.62	0.00	34.38	2.24
6055	7194	1.594833	GGGTCGCCACAGTGATACA	59.405	57.895	0.62	0.00	34.38	2.29
6056	7195	0.036765	GGGTCGCCACAGTGATACAA	60.037	55.000	0.62	0.00	34.38	2.41
6057	7196	1.609580	GGGTCGCCACAGTGATACAAA	60.610	52.381	0.62	0.00	34.38	2.83
6058	7197	1.732259	GGTCGCCACAGTGATACAAAG	59.268	52.381	0.62	0.00	34.38	2.77
6059	7198	1.732259	GTCGCCACAGTGATACAAAGG	59.268	52.381	0.62	0.00	34.38	3.11
6060	7199	1.621317	TCGCCACAGTGATACAAAGGA	59.379	47.619	0.62	0.00	0.00	3.36
6061	7200	2.002586	CGCCACAGTGATACAAAGGAG	58.997	52.381	0.62	0.00	0.00	3.69
6062	7201	2.359900	GCCACAGTGATACAAAGGAGG	58.640	52.381	0.62	0.00	0.00	4.30
6063	7202	2.290323	GCCACAGTGATACAAAGGAGGT	60.290	50.000	0.62	0.00	0.00	3.85
6064	7203	3.338249	CCACAGTGATACAAAGGAGGTG	58.662	50.000	0.62	0.00	0.00	4.00
6065	7204	3.338249	CACAGTGATACAAAGGAGGTGG	58.662	50.000	0.00	0.00	0.00	4.61
6066	7205	2.305927	ACAGTGATACAAAGGAGGTGGG	59.694	50.000	0.00	0.00	0.00	4.61
6067	7206	2.571653	CAGTGATACAAAGGAGGTGGGA	59.428	50.000	0.00	0.00	0.00	4.37
6068	7207	3.009033	CAGTGATACAAAGGAGGTGGGAA	59.991	47.826	0.00	0.00	0.00	3.97
6069	7208	3.264450	AGTGATACAAAGGAGGTGGGAAG	59.736	47.826	0.00	0.00	0.00	3.46
6070	7209	3.009143	GTGATACAAAGGAGGTGGGAAGT	59.991	47.826	0.00	0.00	0.00	3.01
6071	7210	3.655777	TGATACAAAGGAGGTGGGAAGTT	59.344	43.478	0.00	0.00	0.00	2.66
6072	7211	2.364972	ACAAAGGAGGTGGGAAGTTG	57.635	50.000	0.00	0.00	0.00	3.16
6073	7212	1.569072	ACAAAGGAGGTGGGAAGTTGT	59.431	47.619	0.00	0.00	0.00	3.32
6074	7213	2.781174	ACAAAGGAGGTGGGAAGTTGTA	59.219	45.455	0.00	0.00	0.00	2.41
6075	7214	3.146847	CAAAGGAGGTGGGAAGTTGTAC	58.853	50.000	0.00	0.00	0.00	2.90
6076	7215	2.112279	AGGAGGTGGGAAGTTGTACA	57.888	50.000	0.00	0.00	0.00	2.90
6077	7216	1.978580	AGGAGGTGGGAAGTTGTACAG	59.021	52.381	0.00	0.00	0.00	2.74
6078	7217	1.697982	GGAGGTGGGAAGTTGTACAGT	59.302	52.381	0.00	0.00	0.00	3.55
6079	7218	2.550208	GGAGGTGGGAAGTTGTACAGTG	60.550	54.545	0.00	0.00	0.00	3.66
6080	7219	2.104281	GAGGTGGGAAGTTGTACAGTGT	59.896	50.000	0.00	0.00	0.00	3.55
6081	7220	3.311091	AGGTGGGAAGTTGTACAGTGTA	58.689	45.455	0.00	0.00	0.00	2.90
6082	7221	3.070590	AGGTGGGAAGTTGTACAGTGTAC	59.929	47.826	23.85	23.85	0.00	2.90
6083	7222	3.181463	GGTGGGAAGTTGTACAGTGTACA	60.181	47.826	28.24	28.24	0.00	2.90
6084	7223	4.444536	GTGGGAAGTTGTACAGTGTACAA	58.555	43.478	34.48	34.48	35.33	2.41
6085	7224	4.510340	GTGGGAAGTTGTACAGTGTACAAG	59.490	45.833	37.25	0.00	38.01	3.16
6086	7225	3.497262	GGGAAGTTGTACAGTGTACAAGC	59.503	47.826	37.25	30.50	38.01	4.01
6087	7226	4.377897	GGAAGTTGTACAGTGTACAAGCT	58.622	43.478	37.25	31.68	38.01	3.74
6088	7227	4.814771	GGAAGTTGTACAGTGTACAAGCTT	59.185	41.667	37.25	35.47	38.01	3.74
6089	7228	5.987347	GGAAGTTGTACAGTGTACAAGCTTA	59.013	40.000	37.25	20.99	38.01	3.09
6090	7229	6.649557	GGAAGTTGTACAGTGTACAAGCTTAT	59.350	38.462	37.25	24.76	38.01	1.73
6091	7230	7.148623	GGAAGTTGTACAGTGTACAAGCTTATC	60.149	40.741	37.25	29.00	38.01	1.75
6092	7231	5.862323	AGTTGTACAGTGTACAAGCTTATCG	59.138	40.000	37.25	0.00	38.01	2.92
6093	7232	4.171005	TGTACAGTGTACAAGCTTATCGC	58.829	43.478	29.44	3.27	39.57	4.58
6094	7233	2.618053	ACAGTGTACAAGCTTATCGCC	58.382	47.619	0.00	0.00	40.39	5.54
6095	7234	2.233922	ACAGTGTACAAGCTTATCGCCT	59.766	45.455	0.00	0.00	40.39	5.52
6096	7235	2.604914	CAGTGTACAAGCTTATCGCCTG	59.395	50.000	0.00	0.00	40.39	4.85
6097	7236	2.233922	AGTGTACAAGCTTATCGCCTGT	59.766	45.455	0.00	0.00	45.01	4.00
6098	7237	2.603560	GTGTACAAGCTTATCGCCTGTC	59.396	50.000	0.00	0.00	42.16	3.51
6099	7238	2.232696	TGTACAAGCTTATCGCCTGTCA	59.767	45.455	0.00	0.00	42.16	3.58
6100	7239	2.698855	ACAAGCTTATCGCCTGTCAT	57.301	45.000	0.00	0.00	38.97	3.06
6101	7240	2.991250	ACAAGCTTATCGCCTGTCATT	58.009	42.857	0.00	0.00	38.97	2.57
6102	7241	4.137116	ACAAGCTTATCGCCTGTCATTA	57.863	40.909	0.00	0.00	38.97	1.90
6103	7242	3.871594	ACAAGCTTATCGCCTGTCATTAC	59.128	43.478	0.00	0.00	38.97	1.89
6104	7243	2.743938	AGCTTATCGCCTGTCATTACG	58.256	47.619	0.00	0.00	40.39	3.18
6105	7244	1.792949	GCTTATCGCCTGTCATTACGG	59.207	52.381	0.00	0.00	0.00	4.02
6114	7253	3.925688	CTGTCATTACGGGACAAATCG	57.074	47.619	0.00	0.00	44.04	3.34
6115	7254	2.004017	TGTCATTACGGGACAAATCGC	58.996	47.619	0.00	0.00	41.96	4.58
6116	7255	2.004017	GTCATTACGGGACAAATCGCA	58.996	47.619	0.00	0.00	37.65	5.10
6117	7256	2.612212	GTCATTACGGGACAAATCGCAT	59.388	45.455	0.00	0.00	37.65	4.73
6118	7257	3.064820	GTCATTACGGGACAAATCGCATT	59.935	43.478	0.00	0.00	37.65	3.56
6119	7258	4.271533	GTCATTACGGGACAAATCGCATTA	59.728	41.667	0.00	0.00	37.65	1.90
6120	7259	4.876679	TCATTACGGGACAAATCGCATTAA	59.123	37.500	0.00	0.00	37.65	1.40
6121	7260	5.354513	TCATTACGGGACAAATCGCATTAAA	59.645	36.000	0.00	0.00	37.65	1.52
6122	7261	5.821516	TTACGGGACAAATCGCATTAAAT	57.178	34.783	0.00	0.00	37.65	1.40
6123	7262	4.027572	ACGGGACAAATCGCATTAAATG	57.972	40.909	0.00	0.00	37.65	2.32
6139	7278	6.593978	CATTAAATGCGCTACTTAGATGTCC	58.406	40.000	9.73	0.00	0.00	4.02
6140	7279	4.408182	AAATGCGCTACTTAGATGTCCT	57.592	40.909	9.73	0.00	0.00	3.85
6141	7280	3.651803	ATGCGCTACTTAGATGTCCTC	57.348	47.619	9.73	0.00	0.00	3.71
6142	7281	2.656002	TGCGCTACTTAGATGTCCTCT	58.344	47.619	9.73	0.00	38.06	3.69
6143	7282	3.024547	TGCGCTACTTAGATGTCCTCTT	58.975	45.455	9.73	0.00	35.28	2.85
6144	7283	4.204799	TGCGCTACTTAGATGTCCTCTTA	58.795	43.478	9.73	0.00	35.28	2.10
6145	7284	4.036498	TGCGCTACTTAGATGTCCTCTTAC	59.964	45.833	9.73	0.00	35.28	2.34
6146	7285	4.276431	GCGCTACTTAGATGTCCTCTTACT	59.724	45.833	0.00	0.00	35.28	2.24
6147	7286	5.221087	GCGCTACTTAGATGTCCTCTTACTT	60.221	44.000	0.00	0.00	35.28	2.24
6148	7287	6.680872	GCGCTACTTAGATGTCCTCTTACTTT	60.681	42.308	0.00	0.00	35.28	2.66
6149	7288	7.468357	GCGCTACTTAGATGTCCTCTTACTTTA	60.468	40.741	0.00	0.00	35.28	1.85
6150	7289	8.569641	CGCTACTTAGATGTCCTCTTACTTTAT	58.430	37.037	0.00	0.00	35.28	1.40
6151	7290	9.902196	GCTACTTAGATGTCCTCTTACTTTATC	57.098	37.037	0.00	0.00	35.28	1.75
6153	7292	7.942990	ACTTAGATGTCCTCTTACTTTATCGG	58.057	38.462	0.00	0.00	35.28	4.18
6154	7293	5.793030	AGATGTCCTCTTACTTTATCGGG	57.207	43.478	0.00	0.00	0.00	5.14
6155	7294	5.455872	AGATGTCCTCTTACTTTATCGGGA	58.544	41.667	0.00	0.00	0.00	5.14
6156	7295	6.078664	AGATGTCCTCTTACTTTATCGGGAT	58.921	40.000	0.00	0.00	0.00	3.85
6157	7296	5.531122	TGTCCTCTTACTTTATCGGGATG	57.469	43.478	0.00	0.00	0.00	3.51
6158	7297	4.344102	TGTCCTCTTACTTTATCGGGATGG	59.656	45.833	0.00	0.00	0.00	3.51
6159	7298	4.344390	GTCCTCTTACTTTATCGGGATGGT	59.656	45.833	0.00	0.00	0.00	3.55
6160	7299	5.537674	GTCCTCTTACTTTATCGGGATGGTA	59.462	44.000	0.00	0.00	0.00	3.25
6161	7300	6.041296	GTCCTCTTACTTTATCGGGATGGTAA	59.959	42.308	0.00	0.00	0.00	2.85
6162	7301	6.041296	TCCTCTTACTTTATCGGGATGGTAAC	59.959	42.308	0.00	0.00	0.00	2.50
6163	7302	5.835257	TCTTACTTTATCGGGATGGTAACG	58.165	41.667	0.00	0.00	42.51	3.18
6164	7303	5.593909	TCTTACTTTATCGGGATGGTAACGA	59.406	40.000	0.00	0.00	41.20	3.85
6165	7304	4.317671	ACTTTATCGGGATGGTAACGAG	57.682	45.455	0.00	0.00	40.21	4.18
6166	7305	3.069158	ACTTTATCGGGATGGTAACGAGG	59.931	47.826	0.00	0.00	40.21	4.63
6167	7306	0.963962	TATCGGGATGGTAACGAGGC	59.036	55.000	0.00	0.00	40.21	4.70
6168	7307	1.755393	ATCGGGATGGTAACGAGGCC	61.755	60.000	0.00	0.00	40.21	5.19
6169	7308	2.509422	GGGATGGTAACGAGGCCC	59.491	66.667	0.00	0.00	42.51	5.80
6170	7309	2.108362	GGATGGTAACGAGGCCCG	59.892	66.667	11.48	11.48	45.44	6.13
6192	7331	3.255379	GTCCATCGCCGCTTCGTC	61.255	66.667	0.00	0.00	0.00	4.20
6193	7332	3.449227	TCCATCGCCGCTTCGTCT	61.449	61.111	0.00	0.00	0.00	4.18
6194	7333	2.956964	CCATCGCCGCTTCGTCTC	60.957	66.667	0.00	0.00	0.00	3.36
6195	7334	3.315521	CATCGCCGCTTCGTCTCG	61.316	66.667	0.00	0.00	0.00	4.04
6201	7340	4.161976	CGCTTCGTCTCGCTCCGA	62.162	66.667	0.00	0.00	0.00	4.55
6202	7341	2.577378	GCTTCGTCTCGCTCCGAC	60.577	66.667	0.00	0.00	31.95	4.79
6203	7342	2.868196	CTTCGTCTCGCTCCGACA	59.132	61.111	0.00	0.00	31.95	4.35
6204	7343	1.512310	CTTCGTCTCGCTCCGACAC	60.512	63.158	0.00	0.00	31.95	3.67
6205	7344	3.304764	TTCGTCTCGCTCCGACACG	62.305	63.158	8.70	8.70	46.14	4.49
6213	7352	4.778415	CTCCGACACGCGTCCAGG	62.778	72.222	9.86	13.19	39.11	4.45
6216	7355	4.337060	CGACACGCGTCCAGGTCA	62.337	66.667	22.30	0.00	39.11	4.02
6217	7356	2.028484	GACACGCGTCCAGGTCAA	59.972	61.111	19.09	0.00	36.02	3.18
6218	7357	1.374252	GACACGCGTCCAGGTCAAT	60.374	57.895	19.09	0.00	36.02	2.57
6219	7358	1.626654	GACACGCGTCCAGGTCAATG	61.627	60.000	19.09	3.81	36.02	2.82
6220	7359	1.374125	CACGCGTCCAGGTCAATGA	60.374	57.895	9.86	0.00	0.00	2.57
6221	7360	1.079819	ACGCGTCCAGGTCAATGAG	60.080	57.895	5.58	0.00	0.00	2.90
6222	7361	1.811266	CGCGTCCAGGTCAATGAGG	60.811	63.158	0.00	0.00	0.00	3.86
6223	7362	2.109126	GCGTCCAGGTCAATGAGGC	61.109	63.158	0.00	0.00	33.47	4.70
6224	7363	1.296392	CGTCCAGGTCAATGAGGCA	59.704	57.895	0.00	0.00	0.00	4.75
6225	7364	0.107508	CGTCCAGGTCAATGAGGCAT	60.108	55.000	0.00	0.00	0.00	4.40
6226	7365	1.386533	GTCCAGGTCAATGAGGCATG	58.613	55.000	0.00	0.00	32.41	4.06
6227	7366	0.394762	TCCAGGTCAATGAGGCATGC	60.395	55.000	9.90	9.90	30.95	4.06
6228	7367	0.681887	CCAGGTCAATGAGGCATGCA	60.682	55.000	21.36	0.00	30.95	3.96
6229	7368	0.738975	CAGGTCAATGAGGCATGCAG	59.261	55.000	21.36	1.65	0.00	4.41
6230	7369	0.330604	AGGTCAATGAGGCATGCAGT	59.669	50.000	21.36	5.64	0.00	4.40
6231	7370	0.454600	GGTCAATGAGGCATGCAGTG	59.545	55.000	21.36	8.87	33.05	3.66
6249	7388	3.518003	CCATGTAGGCTTGCTGGC	58.482	61.111	0.00	0.00	42.15	4.85
6256	7395	3.441290	GGCTTGCTGGCTGCTGAG	61.441	66.667	17.45	14.96	43.37	3.35
6257	7396	4.117661	GCTTGCTGGCTGCTGAGC	62.118	66.667	21.67	21.67	45.40	4.26
6258	7397	2.360100	CTTGCTGGCTGCTGAGCT	60.360	61.111	17.45	0.00	45.44	4.09
6259	7398	2.671963	TTGCTGGCTGCTGAGCTG	60.672	61.111	17.45	6.46	45.44	4.24
6260	7399	4.717313	TGCTGGCTGCTGAGCTGG	62.717	66.667	17.45	3.69	45.44	4.85
6279	7418	4.329545	GTGGCGGCAGGGTCTTCA	62.330	66.667	13.91	0.00	0.00	3.02
6280	7419	4.329545	TGGCGGCAGGGTCTTCAC	62.330	66.667	7.97	0.00	0.00	3.18
6281	7420	4.329545	GGCGGCAGGGTCTTCACA	62.330	66.667	3.07	0.00	0.00	3.58
6282	7421	2.281484	GCGGCAGGGTCTTCACAA	60.281	61.111	0.00	0.00	0.00	3.33
6283	7422	1.896660	GCGGCAGGGTCTTCACAAA	60.897	57.895	0.00	0.00	0.00	2.83
6284	7423	1.856265	GCGGCAGGGTCTTCACAAAG	61.856	60.000	0.00	0.00	0.00	2.77
6285	7424	0.250295	CGGCAGGGTCTTCACAAAGA	60.250	55.000	0.00	0.00	39.22	2.52
6286	7425	1.611673	CGGCAGGGTCTTCACAAAGAT	60.612	52.381	0.00	0.00	43.26	2.40
6287	7426	2.087646	GGCAGGGTCTTCACAAAGATC	58.912	52.381	0.00	0.00	43.26	2.75
6288	7427	2.290577	GGCAGGGTCTTCACAAAGATCT	60.291	50.000	0.00	0.00	43.26	2.75
6289	7428	2.746362	GCAGGGTCTTCACAAAGATCTG	59.254	50.000	0.00	12.82	43.26	2.90
6290	7429	2.746362	CAGGGTCTTCACAAAGATCTGC	59.254	50.000	0.00	0.00	43.26	4.26
6291	7430	2.373169	AGGGTCTTCACAAAGATCTGCA	59.627	45.455	0.00	0.00	43.26	4.41
6292	7431	3.009916	AGGGTCTTCACAAAGATCTGCAT	59.990	43.478	0.00	0.00	43.26	3.96
6293	7432	3.128242	GGGTCTTCACAAAGATCTGCATG	59.872	47.826	0.00	0.00	43.26	4.06
6294	7433	3.427233	GGTCTTCACAAAGATCTGCATGC	60.427	47.826	11.82	11.82	43.26	4.06
6295	7434	2.751259	TCTTCACAAAGATCTGCATGCC	59.249	45.455	16.68	0.00	36.59	4.40
6296	7435	2.203470	TCACAAAGATCTGCATGCCA	57.797	45.000	16.68	1.32	0.00	4.92
6297	7436	1.814394	TCACAAAGATCTGCATGCCAC	59.186	47.619	16.68	3.85	0.00	5.01
6298	7437	1.135199	CACAAAGATCTGCATGCCACC	60.135	52.381	16.68	1.66	0.00	4.61
6299	7438	1.179152	CAAAGATCTGCATGCCACCA	58.821	50.000	16.68	0.00	0.00	4.17
6300	7439	1.135199	CAAAGATCTGCATGCCACCAC	60.135	52.381	16.68	3.10	0.00	4.16
6301	7440	0.038599	AAGATCTGCATGCCACCACA	59.961	50.000	16.68	0.00	0.00	4.17
6302	7441	0.679002	AGATCTGCATGCCACCACAC	60.679	55.000	16.68	0.35	0.00	3.82
6303	7442	0.961857	GATCTGCATGCCACCACACA	60.962	55.000	16.68	0.00	0.00	3.72
6304	7443	0.963856	ATCTGCATGCCACCACACAG	60.964	55.000	16.68	2.89	0.00	3.66
6305	7444	2.598099	TGCATGCCACCACACAGG	60.598	61.111	16.68	0.00	45.67	4.00
6314	7453	4.885426	CCACACAGGTGCTTGACT	57.115	55.556	0.00	0.00	43.88	3.41
6316	7455	1.800805	CCACACAGGTGCTTGACTAG	58.199	55.000	0.00	0.00	43.88	2.57
6317	7456	1.070758	CCACACAGGTGCTTGACTAGT	59.929	52.381	0.00	0.00	43.88	2.57
6318	7457	2.485479	CCACACAGGTGCTTGACTAGTT	60.485	50.000	0.00	0.00	43.88	2.24
6319	7458	2.802816	CACACAGGTGCTTGACTAGTTC	59.197	50.000	0.00	0.00	38.37	3.01
6320	7459	2.061773	CACAGGTGCTTGACTAGTTCG	58.938	52.381	0.00	0.00	0.00	3.95
6321	7460	1.687123	ACAGGTGCTTGACTAGTTCGT	59.313	47.619	0.00	0.00	0.00	3.85
6322	7461	2.102588	ACAGGTGCTTGACTAGTTCGTT	59.897	45.455	0.00	0.00	0.00	3.85
6323	7462	3.131396	CAGGTGCTTGACTAGTTCGTTT	58.869	45.455	0.00	0.00	0.00	3.60
6324	7463	4.202182	ACAGGTGCTTGACTAGTTCGTTTA	60.202	41.667	0.00	0.00	0.00	2.01
6325	7464	4.386049	CAGGTGCTTGACTAGTTCGTTTAG	59.614	45.833	0.00	0.00	0.00	1.85
6326	7465	4.038883	AGGTGCTTGACTAGTTCGTTTAGT	59.961	41.667	0.00	0.00	34.19	2.24
6327	7466	5.242393	AGGTGCTTGACTAGTTCGTTTAGTA	59.758	40.000	0.00	0.00	31.74	1.82
6328	7467	5.344396	GGTGCTTGACTAGTTCGTTTAGTAC	59.656	44.000	0.00	0.00	31.74	2.73
6329	7468	5.344396	GTGCTTGACTAGTTCGTTTAGTACC	59.656	44.000	0.00	0.00	31.74	3.34
6330	7469	4.861462	GCTTGACTAGTTCGTTTAGTACCC	59.139	45.833	0.00	0.00	31.74	3.69
6331	7470	5.565439	GCTTGACTAGTTCGTTTAGTACCCA	60.565	44.000	0.00	0.00	31.74	4.51
6332	7471	5.376854	TGACTAGTTCGTTTAGTACCCAC	57.623	43.478	0.00	0.00	31.74	4.61
6333	7472	4.083324	TGACTAGTTCGTTTAGTACCCACG	60.083	45.833	0.00	3.32	31.74	4.94
6334	7473	3.821033	ACTAGTTCGTTTAGTACCCACGT	59.179	43.478	8.45	0.00	35.40	4.49
6335	7474	5.001232	ACTAGTTCGTTTAGTACCCACGTA	58.999	41.667	8.45	0.00	35.40	3.57
6336	7475	4.160736	AGTTCGTTTAGTACCCACGTAC	57.839	45.455	9.45	9.45	44.51	3.67
6343	7482	3.059603	GTACCCACGTACTGCCATG	57.940	57.895	0.00	0.00	41.50	3.66
6344	7483	0.248289	GTACCCACGTACTGCCATGT	59.752	55.000	0.00	0.00	41.50	3.21
6345	7484	0.248012	TACCCACGTACTGCCATGTG	59.752	55.000	0.00	0.00	35.58	3.21
6346	7485	3.889227	CCACGTACTGCCATGTGG	58.111	61.111	6.96	6.96	46.36	4.17
6347	7486	3.889227	CACGTACTGCCATGTGGG	58.111	61.111	0.54	0.00	40.85	4.61
6348	7487	1.003839	CACGTACTGCCATGTGGGT	60.004	57.895	0.54	0.00	39.65	4.51
6349	7488	0.248012	CACGTACTGCCATGTGGGTA	59.752	55.000	0.54	0.00	39.65	3.69
6350	7489	0.248289	ACGTACTGCCATGTGGGTAC	59.752	55.000	0.54	5.11	39.65	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
202	208	4.462508	TGGCAAACAACATTGACAAAGA	57.537	36.364	0.00	0.00	45.10	2.52
418	427	1.745087	GACGGTGGTTGATGCATGATT	59.255	47.619	2.46	0.00	0.00	2.57
454	463	0.883370	GGGTGTGAGGGTTGTCGTTC	60.883	60.000	0.00	0.00	0.00	3.95
470	479	2.122954	GGGTGAGAGGGTGAGGGT	59.877	66.667	0.00	0.00	0.00	4.34
789	832	0.041982	AGTGAGGGGAAGGGAGAGAC	59.958	60.000	0.00	0.00	0.00	3.36
872	915	2.299013	CACTAGCCCGCTTATATGGTCA	59.701	50.000	0.00	0.00	0.00	4.02
974	1024	3.730761	CGCCTGCACAGAACTGGC	61.731	66.667	6.76	0.91	45.69	4.85
994	1050	2.012673	GTCTGAAGCAGCCATCGAATT	58.987	47.619	0.00	0.00	0.00	2.17
1155	1223	3.866582	CGAGGGATCTGGCCACCC	61.867	72.222	20.16	20.16	43.55	4.61
1228	1296	1.443802	GCTCCTGCTGAAACCTGTAC	58.556	55.000	0.00	0.00	36.03	2.90
1254	1322	0.251916	CAGGCATTTACCTCCGTGGA	59.748	55.000	0.00	0.00	38.26	4.02
1357	1431	7.565680	AGGAAATCATGGATACGAAGTTAGTT	58.434	34.615	0.00	0.00	37.78	2.24
1721	2180	7.052873	AGAGAATTGTGATGTTAGATCTTGGG	58.947	38.462	0.00	0.00	0.00	4.12
2002	2582	7.117236	CAGGTTTCAACTAGTTAAATCAGCGTA	59.883	37.037	8.04	0.00	0.00	4.42
2106	2686	2.023673	CAACAGAGCAACAAGGACCAA	58.976	47.619	0.00	0.00	0.00	3.67
2335	2916	3.244582	TGGTAGCTAGAAACTGACCCAA	58.755	45.455	0.00	0.00	0.00	4.12
2615	3227	4.592942	AGAGAATGCAGTTGGATTTGCTA	58.407	39.130	0.36	0.00	40.87	3.49
2817	3464	9.461312	AACAGTAAGGATCAGTGCAATATTAAA	57.539	29.630	0.00	0.00	0.00	1.52
3064	3712	3.750922	GCAGGAACCTCCCTACTTTTGTT	60.751	47.826	0.00	0.00	37.19	2.83
3163	3811	7.325660	AGCAGACAATGTATTCCAGTTATTG	57.674	36.000	0.00	0.00	35.47	1.90
3188	3836	5.161943	ACGCAAAGGTAAATAGAGTTCCT	57.838	39.130	0.00	0.00	0.00	3.36
3475	4248	3.618351	TCGTGTTTACCTTGGGTCAAAA	58.382	40.909	0.00	0.00	37.09	2.44
3659	4482	7.578189	GCACCTACACAACCTAACTAATAGTGA	60.578	40.741	0.00	0.00	0.00	3.41
3841	4665	5.414454	TCAATAACAATAACCCAGACACAGC	59.586	40.000	0.00	0.00	0.00	4.40
3969	4796	8.190784	ACATAAATAGCAAGTTATTGTCCAAGC	58.809	33.333	0.00	0.00	38.76	4.01
4001	4837	4.199310	TGAGCAGCAACAAACTAGAACTT	58.801	39.130	0.00	0.00	0.00	2.66
4158	5157	0.179048	CCCTGCGCTTGGTGATGATA	60.179	55.000	9.73	0.00	0.00	2.15
4257	5336	2.432972	GCATGCGCACCAAAAGGG	60.433	61.111	14.90	0.00	44.81	3.95
4315	5394	1.750778	CCGCCAATTCTAACTGCCATT	59.249	47.619	0.00	0.00	0.00	3.16
4335	5414	1.081840	GTGTGCGCTTCTTTCCAGC	60.082	57.895	9.73	0.00	0.00	4.85
4358	5437	4.262549	GCAGAGACCAGCAGATAGATCAAT	60.263	45.833	0.00	0.00	0.00	2.57
4408	5490	5.319453	AGTATAAATGTATGCATGCTGGCT	58.681	37.500	20.33	3.63	35.15	4.75
4428	5516	7.008021	ACAAGTATTTAAAACGGAGGGAGTA	57.992	36.000	0.00	0.00	0.00	2.59
4429	5517	5.872963	ACAAGTATTTAAAACGGAGGGAGT	58.127	37.500	0.00	0.00	0.00	3.85
4430	5518	6.171213	AGACAAGTATTTAAAACGGAGGGAG	58.829	40.000	0.00	0.00	0.00	4.30
4431	5519	6.117975	AGACAAGTATTTAAAACGGAGGGA	57.882	37.500	0.00	0.00	0.00	4.20
4432	5520	6.812879	AAGACAAGTATTTAAAACGGAGGG	57.187	37.500	0.00	0.00	0.00	4.30
4433	5521	8.095937	AGAAAGACAAGTATTTAAAACGGAGG	57.904	34.615	0.00	0.00	0.00	4.30
4435	5523	9.211485	CCTAGAAAGACAAGTATTTAAAACGGA	57.789	33.333	0.00	0.00	0.00	4.69
4436	5524	7.961283	GCCTAGAAAGACAAGTATTTAAAACGG	59.039	37.037	0.00	0.00	0.00	4.44
4437	5525	8.500773	TGCCTAGAAAGACAAGTATTTAAAACG	58.499	33.333	0.00	0.00	0.00	3.60
4442	5530	9.733556	TGAAATGCCTAGAAAGACAAGTATTTA	57.266	29.630	0.00	0.00	0.00	1.40
4443	5531	8.635765	TGAAATGCCTAGAAAGACAAGTATTT	57.364	30.769	0.00	0.00	0.00	1.40
4444	5532	8.515414	GTTGAAATGCCTAGAAAGACAAGTATT	58.485	33.333	0.00	0.00	0.00	1.89
4445	5533	7.665559	TGTTGAAATGCCTAGAAAGACAAGTAT	59.334	33.333	0.00	0.00	0.00	2.12
4446	5534	6.995686	TGTTGAAATGCCTAGAAAGACAAGTA	59.004	34.615	0.00	0.00	0.00	2.24
4447	5535	5.827797	TGTTGAAATGCCTAGAAAGACAAGT	59.172	36.000	0.00	0.00	0.00	3.16
4448	5536	6.317789	TGTTGAAATGCCTAGAAAGACAAG	57.682	37.500	0.00	0.00	0.00	3.16
4449	5537	6.321181	ACTTGTTGAAATGCCTAGAAAGACAA	59.679	34.615	0.00	0.00	0.00	3.18
4450	5538	5.827797	ACTTGTTGAAATGCCTAGAAAGACA	59.172	36.000	0.00	0.00	0.00	3.41
4451	5539	6.017109	TCACTTGTTGAAATGCCTAGAAAGAC	60.017	38.462	0.00	0.00	0.00	3.01
4452	5540	6.017109	GTCACTTGTTGAAATGCCTAGAAAGA	60.017	38.462	0.00	0.00	35.39	2.52
4453	5541	6.016777	AGTCACTTGTTGAAATGCCTAGAAAG	60.017	38.462	0.00	0.00	35.39	2.62
4454	5542	5.827797	AGTCACTTGTTGAAATGCCTAGAAA	59.172	36.000	0.00	0.00	35.39	2.52
4455	5543	5.376625	AGTCACTTGTTGAAATGCCTAGAA	58.623	37.500	0.00	0.00	35.39	2.10
4456	5544	4.973168	AGTCACTTGTTGAAATGCCTAGA	58.027	39.130	0.00	0.00	35.39	2.43
4457	5545	5.700832	TGTAGTCACTTGTTGAAATGCCTAG	59.299	40.000	0.00	0.00	35.39	3.02
4458	5546	5.616270	TGTAGTCACTTGTTGAAATGCCTA	58.384	37.500	0.00	0.00	35.39	3.93
4459	5547	4.460263	TGTAGTCACTTGTTGAAATGCCT	58.540	39.130	0.00	0.00	35.39	4.75
4460	5548	4.829064	TGTAGTCACTTGTTGAAATGCC	57.171	40.909	0.00	0.00	35.39	4.40
4461	5549	6.015504	CGTATGTAGTCACTTGTTGAAATGC	58.984	40.000	0.00	0.00	35.39	3.56
4462	5550	6.367695	TCCGTATGTAGTCACTTGTTGAAATG	59.632	38.462	0.00	0.00	35.39	2.32
4463	5551	6.460781	TCCGTATGTAGTCACTTGTTGAAAT	58.539	36.000	0.00	0.00	35.39	2.17
4464	5552	5.845103	TCCGTATGTAGTCACTTGTTGAAA	58.155	37.500	0.00	0.00	35.39	2.69
4465	5553	5.456548	TCCGTATGTAGTCACTTGTTGAA	57.543	39.130	0.00	0.00	35.39	2.69
4466	5554	4.617530	GCTCCGTATGTAGTCACTTGTTGA	60.618	45.833	0.00	0.00	0.00	3.18
4467	5555	3.612860	GCTCCGTATGTAGTCACTTGTTG	59.387	47.826	0.00	0.00	0.00	3.33
4468	5556	3.257375	TGCTCCGTATGTAGTCACTTGTT	59.743	43.478	0.00	0.00	0.00	2.83
4469	5557	2.823747	TGCTCCGTATGTAGTCACTTGT	59.176	45.455	0.00	0.00	0.00	3.16
4470	5558	3.503827	TGCTCCGTATGTAGTCACTTG	57.496	47.619	0.00	0.00	0.00	3.16
4471	5559	4.530710	TTTGCTCCGTATGTAGTCACTT	57.469	40.909	0.00	0.00	0.00	3.16
4472	5560	4.530710	TTTTGCTCCGTATGTAGTCACT	57.469	40.909	0.00	0.00	0.00	3.41
4473	5561	4.868171	TCATTTTGCTCCGTATGTAGTCAC	59.132	41.667	0.00	0.00	0.00	3.67
4474	5562	5.079689	TCATTTTGCTCCGTATGTAGTCA	57.920	39.130	0.00	0.00	0.00	3.41
4475	5563	5.005779	CACTCATTTTGCTCCGTATGTAGTC	59.994	44.000	0.00	0.00	0.00	2.59
4476	5564	4.870426	CACTCATTTTGCTCCGTATGTAGT	59.130	41.667	0.00	0.00	0.00	2.73
4477	5565	5.109210	TCACTCATTTTGCTCCGTATGTAG	58.891	41.667	0.00	0.00	0.00	2.74
4478	5566	5.079689	TCACTCATTTTGCTCCGTATGTA	57.920	39.130	0.00	0.00	0.00	2.29
4479	5567	3.937814	TCACTCATTTTGCTCCGTATGT	58.062	40.909	0.00	0.00	0.00	2.29
4480	5568	4.944962	TTCACTCATTTTGCTCCGTATG	57.055	40.909	0.00	0.00	0.00	2.39
4481	5569	5.431765	AGATTCACTCATTTTGCTCCGTAT	58.568	37.500	0.00	0.00	0.00	3.06
4482	5570	4.832248	AGATTCACTCATTTTGCTCCGTA	58.168	39.130	0.00	0.00	0.00	4.02
4483	5571	3.679389	AGATTCACTCATTTTGCTCCGT	58.321	40.909	0.00	0.00	0.00	4.69
4484	5572	4.631377	TGTAGATTCACTCATTTTGCTCCG	59.369	41.667	0.00	0.00	0.00	4.63
4485	5573	5.645497	AGTGTAGATTCACTCATTTTGCTCC	59.355	40.000	0.00	0.00	44.07	4.70
4486	5574	6.734104	AGTGTAGATTCACTCATTTTGCTC	57.266	37.500	0.00	0.00	44.07	4.26
4525	5613	9.074576	TCAAATGACTACTACATACGGATGTAT	57.925	33.333	20.64	13.02	45.42	2.29
4526	5614	8.454570	TCAAATGACTACTACATACGGATGTA	57.545	34.615	19.32	19.32	44.77	2.29
4528	5616	8.642908	TTTCAAATGACTACTACATACGGATG	57.357	34.615	5.94	5.94	39.16	3.51
4529	5617	9.261180	CATTTCAAATGACTACTACATACGGAT	57.739	33.333	3.82	0.00	0.00	4.18
4530	5618	8.255206	ACATTTCAAATGACTACTACATACGGA	58.745	33.333	17.30	0.00	0.00	4.69
4531	5619	8.420374	ACATTTCAAATGACTACTACATACGG	57.580	34.615	17.30	0.00	0.00	4.02
4532	5620	9.302345	AGACATTTCAAATGACTACTACATACG	57.698	33.333	17.30	0.00	0.00	3.06
4556	5644	9.595823	CCGTTCCTAAATAATTGTCTTTCTAGA	57.404	33.333	0.00	0.00	0.00	2.43
4557	5645	8.827677	CCCGTTCCTAAATAATTGTCTTTCTAG	58.172	37.037	0.00	0.00	0.00	2.43
4558	5646	7.771826	CCCCGTTCCTAAATAATTGTCTTTCTA	59.228	37.037	0.00	0.00	0.00	2.10
4559	5647	6.602009	CCCCGTTCCTAAATAATTGTCTTTCT	59.398	38.462	0.00	0.00	0.00	2.52
4560	5648	6.183360	CCCCCGTTCCTAAATAATTGTCTTTC	60.183	42.308	0.00	0.00	0.00	2.62
4561	5649	5.655090	CCCCCGTTCCTAAATAATTGTCTTT	59.345	40.000	0.00	0.00	0.00	2.52
4562	5650	5.198207	CCCCCGTTCCTAAATAATTGTCTT	58.802	41.667	0.00	0.00	0.00	3.01
4563	5651	4.788679	CCCCCGTTCCTAAATAATTGTCT	58.211	43.478	0.00	0.00	0.00	3.41
4582	5670	3.889538	GCATTTCCAGTAAATACTCCCCC	59.110	47.826	0.00	0.00	35.54	5.40
4583	5671	4.532834	TGCATTTCCAGTAAATACTCCCC	58.467	43.478	0.00	0.00	35.54	4.81
4584	5672	5.507985	GCATGCATTTCCAGTAAATACTCCC	60.508	44.000	14.21	0.00	35.54	4.30
4585	5673	5.067674	TGCATGCATTTCCAGTAAATACTCC	59.932	40.000	18.46	0.00	35.54	3.85
4586	5674	6.135290	TGCATGCATTTCCAGTAAATACTC	57.865	37.500	18.46	0.00	35.54	2.59
4587	5675	6.720112	ATGCATGCATTTCCAGTAAATACT	57.280	33.333	27.46	0.00	35.54	2.12
4643	5731	3.367910	GCTATGTCCTATCCTAGCAGCAC	60.368	52.174	0.00	0.00	37.21	4.40
4725	5815	6.821031	AGCTATACATAGGTGTACTAGCAC	57.179	41.667	19.71	0.00	43.21	4.40
4744	5834	4.501433	ACTCCTACCTAGGTAGCTAGCTA	58.499	47.826	34.91	26.60	44.80	3.32
4745	5835	3.329277	ACTCCTACCTAGGTAGCTAGCT	58.671	50.000	34.91	27.23	44.80	3.32
4746	5836	3.793819	ACTCCTACCTAGGTAGCTAGC	57.206	52.381	34.91	15.19	44.80	3.42
4747	5837	4.835678	GCTACTCCTACCTAGGTAGCTAG	58.164	52.174	34.91	32.10	44.80	3.42
4981	6084	7.599630	TGGTATAGTTTTACTAGCAAAACCG	57.400	36.000	22.25	0.00	45.43	4.44
4998	6101	9.929180	ATGTATACAATGTAAGTGCTGGTATAG	57.071	33.333	10.14	0.00	33.50	1.31
5025	6128	2.995466	ATCACAAATGTTGGCACTCG	57.005	45.000	0.00	0.00	34.12	4.18
5027	6130	2.622942	ACGAATCACAAATGTTGGCACT	59.377	40.909	0.00	0.00	34.12	4.40
5126	6229	4.150359	AGAAACGTTCAAGACCTCCTCTA	58.850	43.478	0.00	0.00	0.00	2.43
5137	6240	2.404923	TGTGTGGGAGAAACGTTCAA	57.595	45.000	0.00	0.00	0.00	2.69
5221	6324	7.872483	GTCCAACTTCCACATACAATCAAAAAT	59.128	33.333	0.00	0.00	0.00	1.82
5412	6517	0.034756	AATTTGGGCCGCAACCTTTC	59.965	50.000	6.19	0.00	0.00	2.62
5588	6694	4.317139	CCAATTCGACGCTCTAATACAACG	60.317	45.833	0.00	0.00	0.00	4.10
5590	6696	5.001237	TCCAATTCGACGCTCTAATACAA	57.999	39.130	0.00	0.00	0.00	2.41
5613	6737	5.128827	AGGTCGTTAATAAGATTCAGCCTGA	59.871	40.000	0.00	0.00	0.00	3.86
5681	6819	3.212682	TCGCTAGCTCTCTGCCCG	61.213	66.667	13.93	0.00	44.23	6.13
5785	6923	1.818674	CAAAAGCTGGCGGTCCTAAAT	59.181	47.619	0.00	0.00	0.00	1.40
5790	6928	2.626780	GGTCAAAAGCTGGCGGTCC	61.627	63.158	0.00	0.00	0.00	4.46
5833	6972	7.823799	ACTGAAAGGTCATTGTTTTTCATTTGT	59.176	29.630	10.82	6.04	38.45	2.83
5876	7015	7.443879	TCACTACAAGAAATATGTCAACTTGCA	59.556	33.333	0.00	0.00	40.72	4.08
5903	7042	1.684983	GCAGGACTAGGGTATTACGCA	59.315	52.381	12.75	0.00	32.95	5.24
5904	7043	1.962100	AGCAGGACTAGGGTATTACGC	59.038	52.381	2.80	2.80	0.00	4.42
5905	7044	4.369182	CAAAGCAGGACTAGGGTATTACG	58.631	47.826	0.00	0.00	0.00	3.18
5906	7045	4.127907	GCAAAGCAGGACTAGGGTATTAC	58.872	47.826	0.00	0.00	0.00	1.89
5907	7046	4.037927	AGCAAAGCAGGACTAGGGTATTA	58.962	43.478	0.00	0.00	0.00	0.98
5908	7047	2.846827	AGCAAAGCAGGACTAGGGTATT	59.153	45.455	0.00	0.00	0.00	1.89
5909	7048	2.482494	AGCAAAGCAGGACTAGGGTAT	58.518	47.619	0.00	0.00	0.00	2.73
5910	7049	1.952621	AGCAAAGCAGGACTAGGGTA	58.047	50.000	0.00	0.00	0.00	3.69
5911	7050	1.952621	TAGCAAAGCAGGACTAGGGT	58.047	50.000	0.00	0.00	0.00	4.34
5912	7051	4.899352	ATATAGCAAAGCAGGACTAGGG	57.101	45.455	0.00	0.00	0.00	3.53
5913	7052	8.097038	TCAAATATATAGCAAAGCAGGACTAGG	58.903	37.037	0.00	0.00	0.00	3.02
5914	7053	9.149225	CTCAAATATATAGCAAAGCAGGACTAG	57.851	37.037	0.00	0.00	0.00	2.57
5915	7054	8.651389	ACTCAAATATATAGCAAAGCAGGACTA	58.349	33.333	0.00	0.00	0.00	2.59
5916	7055	7.443575	CACTCAAATATATAGCAAAGCAGGACT	59.556	37.037	0.00	0.00	0.00	3.85
5917	7056	7.227512	ACACTCAAATATATAGCAAAGCAGGAC	59.772	37.037	0.00	0.00	0.00	3.85
5918	7057	7.282585	ACACTCAAATATATAGCAAAGCAGGA	58.717	34.615	0.00	0.00	0.00	3.86
5919	7058	7.502120	ACACTCAAATATATAGCAAAGCAGG	57.498	36.000	0.00	0.00	0.00	4.85
5920	7059	8.834465	AGAACACTCAAATATATAGCAAAGCAG	58.166	33.333	0.00	0.00	0.00	4.24
5921	7060	8.737168	AGAACACTCAAATATATAGCAAAGCA	57.263	30.769	0.00	0.00	0.00	3.91
5922	7061	9.443283	CAAGAACACTCAAATATATAGCAAAGC	57.557	33.333	0.00	0.00	0.00	3.51
5925	7064	9.890629	ACTCAAGAACACTCAAATATATAGCAA	57.109	29.630	0.00	0.00	0.00	3.91
5926	7065	9.890629	AACTCAAGAACACTCAAATATATAGCA	57.109	29.630	0.00	0.00	0.00	3.49
5931	7070	9.996554	TCAAGAACTCAAGAACACTCAAATATA	57.003	29.630	0.00	0.00	0.00	0.86
5932	7071	8.908786	TCAAGAACTCAAGAACACTCAAATAT	57.091	30.769	0.00	0.00	0.00	1.28
5933	7072	8.612619	GTTCAAGAACTCAAGAACACTCAAATA	58.387	33.333	5.72	0.00	39.95	1.40
5934	7073	7.475840	GTTCAAGAACTCAAGAACACTCAAAT	58.524	34.615	5.72	0.00	39.95	2.32
5935	7074	6.842163	GTTCAAGAACTCAAGAACACTCAAA	58.158	36.000	5.72	0.00	39.95	2.69
5936	7075	6.422776	GTTCAAGAACTCAAGAACACTCAA	57.577	37.500	5.72	0.00	39.95	3.02
5950	7089	2.666994	GCACCGTAGCTAGTTCAAGAAC	59.333	50.000	4.82	4.82	41.45	3.01
5951	7090	2.297880	TGCACCGTAGCTAGTTCAAGAA	59.702	45.455	0.00	0.00	34.99	2.52
5952	7091	1.890489	TGCACCGTAGCTAGTTCAAGA	59.110	47.619	0.00	0.00	34.99	3.02
5953	7092	2.363788	TGCACCGTAGCTAGTTCAAG	57.636	50.000	0.00	0.00	34.99	3.02
5954	7093	2.616960	CATGCACCGTAGCTAGTTCAA	58.383	47.619	0.00	0.00	34.99	2.69
5955	7094	1.739035	GCATGCACCGTAGCTAGTTCA	60.739	52.381	14.21	0.00	34.99	3.18
5956	7095	0.931005	GCATGCACCGTAGCTAGTTC	59.069	55.000	14.21	0.00	34.99	3.01
5957	7096	0.806102	CGCATGCACCGTAGCTAGTT	60.806	55.000	19.57	0.00	34.99	2.24
5958	7097	1.226974	CGCATGCACCGTAGCTAGT	60.227	57.895	19.57	0.00	34.99	2.57
5959	7098	0.030235	TACGCATGCACCGTAGCTAG	59.970	55.000	19.57	0.00	39.88	3.42
5960	7099	2.108568	TACGCATGCACCGTAGCTA	58.891	52.632	19.57	0.00	39.88	3.32
5961	7100	2.889617	TACGCATGCACCGTAGCT	59.110	55.556	19.57	0.00	39.88	3.32
5964	7103	1.140161	GGACTACGCATGCACCGTA	59.860	57.895	19.57	17.29	39.88	4.02
5965	7104	2.125673	GGACTACGCATGCACCGT	60.126	61.111	19.57	16.92	42.26	4.83
5966	7105	1.295357	TTTGGACTACGCATGCACCG	61.295	55.000	19.57	7.03	0.00	4.94
5967	7106	0.878416	TTTTGGACTACGCATGCACC	59.122	50.000	19.57	12.38	0.00	5.01
5968	7107	1.804151	TCTTTTGGACTACGCATGCAC	59.196	47.619	19.57	3.04	0.00	4.57
5969	7108	2.177394	TCTTTTGGACTACGCATGCA	57.823	45.000	19.57	0.00	0.00	3.96
5970	7109	2.032178	GGATCTTTTGGACTACGCATGC	59.968	50.000	7.91	7.91	0.00	4.06
5971	7110	3.270027	TGGATCTTTTGGACTACGCATG	58.730	45.455	0.00	0.00	0.00	4.06
5972	7111	3.627395	TGGATCTTTTGGACTACGCAT	57.373	42.857	0.00	0.00	0.00	4.73
5973	7112	3.410631	TTGGATCTTTTGGACTACGCA	57.589	42.857	0.00	0.00	0.00	5.24
5974	7113	4.201920	GGATTTGGATCTTTTGGACTACGC	60.202	45.833	0.00	0.00	32.66	4.42
5975	7114	5.186198	AGGATTTGGATCTTTTGGACTACG	58.814	41.667	0.00	0.00	32.66	3.51
5976	7115	6.887002	AGAAGGATTTGGATCTTTTGGACTAC	59.113	38.462	0.00	0.00	32.35	2.73
5977	7116	7.032598	AGAAGGATTTGGATCTTTTGGACTA	57.967	36.000	0.00	0.00	32.35	2.59
5978	7117	5.896963	AGAAGGATTTGGATCTTTTGGACT	58.103	37.500	0.00	0.00	32.35	3.85
5979	7118	6.435591	AGAAGAAGGATTTGGATCTTTTGGAC	59.564	38.462	0.00	0.00	32.35	4.02
5980	7119	6.435277	CAGAAGAAGGATTTGGATCTTTTGGA	59.565	38.462	0.00	0.00	32.35	3.53
5981	7120	6.210185	ACAGAAGAAGGATTTGGATCTTTTGG	59.790	38.462	8.96	0.00	37.96	3.28
5982	7121	7.224522	ACAGAAGAAGGATTTGGATCTTTTG	57.775	36.000	0.00	0.00	38.95	2.44
5983	7122	7.119846	CGTACAGAAGAAGGATTTGGATCTTTT	59.880	37.037	0.00	0.00	32.35	2.27
5984	7123	6.595716	CGTACAGAAGAAGGATTTGGATCTTT	59.404	38.462	0.00	0.00	34.62	2.52
5985	7124	6.109359	CGTACAGAAGAAGGATTTGGATCTT	58.891	40.000	0.00	0.00	34.96	2.40
5986	7125	5.665459	CGTACAGAAGAAGGATTTGGATCT	58.335	41.667	0.00	0.00	32.66	2.75
5987	7126	4.271291	GCGTACAGAAGAAGGATTTGGATC	59.729	45.833	0.00	0.00	0.00	3.36
5988	7127	4.192317	GCGTACAGAAGAAGGATTTGGAT	58.808	43.478	0.00	0.00	0.00	3.41
5989	7128	3.596214	GCGTACAGAAGAAGGATTTGGA	58.404	45.455	0.00	0.00	0.00	3.53
5990	7129	2.678336	GGCGTACAGAAGAAGGATTTGG	59.322	50.000	0.00	0.00	0.00	3.28
5991	7130	3.600388	AGGCGTACAGAAGAAGGATTTG	58.400	45.455	0.00	0.00	0.00	2.32
5992	7131	3.983044	AGGCGTACAGAAGAAGGATTT	57.017	42.857	0.00	0.00	0.00	2.17
5993	7132	3.600388	CAAGGCGTACAGAAGAAGGATT	58.400	45.455	0.00	0.00	0.00	3.01
5994	7133	2.093447	CCAAGGCGTACAGAAGAAGGAT	60.093	50.000	0.00	0.00	0.00	3.24
5995	7134	1.275291	CCAAGGCGTACAGAAGAAGGA	59.725	52.381	0.00	0.00	0.00	3.36
5996	7135	1.676014	CCCAAGGCGTACAGAAGAAGG	60.676	57.143	0.00	0.00	0.00	3.46
5997	7136	1.726853	CCCAAGGCGTACAGAAGAAG	58.273	55.000	0.00	0.00	0.00	2.85
5998	7137	0.321298	GCCCAAGGCGTACAGAAGAA	60.321	55.000	0.00	0.00	39.62	2.52
5999	7138	1.295423	GCCCAAGGCGTACAGAAGA	59.705	57.895	0.00	0.00	39.62	2.87
6000	7139	3.890674	GCCCAAGGCGTACAGAAG	58.109	61.111	0.00	0.00	39.62	2.85
6021	7160	3.467803	CGACCCCTTTTGCCTATAGAAG	58.532	50.000	0.00	0.00	0.00	2.85
6022	7161	2.420967	GCGACCCCTTTTGCCTATAGAA	60.421	50.000	0.00	0.00	0.00	2.10
6023	7162	1.140252	GCGACCCCTTTTGCCTATAGA	59.860	52.381	0.00	0.00	0.00	1.98
6024	7163	1.594331	GCGACCCCTTTTGCCTATAG	58.406	55.000	0.00	0.00	0.00	1.31
6025	7164	0.181824	GGCGACCCCTTTTGCCTATA	59.818	55.000	0.00	0.00	42.29	1.31
6026	7165	1.076995	GGCGACCCCTTTTGCCTAT	60.077	57.895	0.00	0.00	42.29	2.57
6027	7166	2.353573	GGCGACCCCTTTTGCCTA	59.646	61.111	0.00	0.00	42.29	3.93
6028	7167	3.897122	TGGCGACCCCTTTTGCCT	61.897	61.111	3.54	0.00	45.46	4.75
6029	7168	3.680786	GTGGCGACCCCTTTTGCC	61.681	66.667	0.00	0.00	45.46	4.52
6030	7169	2.909965	TGTGGCGACCCCTTTTGC	60.910	61.111	0.00	0.00	0.00	3.68
6031	7170	1.528309	ACTGTGGCGACCCCTTTTG	60.528	57.895	0.00	0.00	0.00	2.44
6032	7171	1.528309	CACTGTGGCGACCCCTTTT	60.528	57.895	0.00	0.00	0.00	2.27
6033	7172	1.779061	ATCACTGTGGCGACCCCTTT	61.779	55.000	8.11	0.00	0.00	3.11
6034	7173	0.907704	TATCACTGTGGCGACCCCTT	60.908	55.000	8.11	0.00	0.00	3.95
6035	7174	1.305802	TATCACTGTGGCGACCCCT	60.306	57.895	8.11	0.00	0.00	4.79
6036	7175	1.153429	GTATCACTGTGGCGACCCC	60.153	63.158	8.11	0.00	0.00	4.95
6037	7176	0.036765	TTGTATCACTGTGGCGACCC	60.037	55.000	8.11	0.00	0.00	4.46
6038	7177	1.732259	CTTTGTATCACTGTGGCGACC	59.268	52.381	8.11	0.00	0.00	4.79
6039	7178	1.732259	CCTTTGTATCACTGTGGCGAC	59.268	52.381	8.11	4.54	0.00	5.19
6040	7179	1.621317	TCCTTTGTATCACTGTGGCGA	59.379	47.619	8.11	0.00	0.00	5.54
6041	7180	2.002586	CTCCTTTGTATCACTGTGGCG	58.997	52.381	8.11	0.00	0.00	5.69
6042	7181	2.290323	ACCTCCTTTGTATCACTGTGGC	60.290	50.000	8.11	0.00	0.00	5.01
6043	7182	3.338249	CACCTCCTTTGTATCACTGTGG	58.662	50.000	8.11	0.00	0.00	4.17
6044	7183	3.338249	CCACCTCCTTTGTATCACTGTG	58.662	50.000	0.17	0.17	0.00	3.66
6045	7184	2.305927	CCCACCTCCTTTGTATCACTGT	59.694	50.000	0.00	0.00	0.00	3.55
6046	7185	2.571653	TCCCACCTCCTTTGTATCACTG	59.428	50.000	0.00	0.00	0.00	3.66
6047	7186	2.915869	TCCCACCTCCTTTGTATCACT	58.084	47.619	0.00	0.00	0.00	3.41
6048	7187	3.009143	ACTTCCCACCTCCTTTGTATCAC	59.991	47.826	0.00	0.00	0.00	3.06
6049	7188	3.256704	ACTTCCCACCTCCTTTGTATCA	58.743	45.455	0.00	0.00	0.00	2.15
6050	7189	4.010349	CAACTTCCCACCTCCTTTGTATC	58.990	47.826	0.00	0.00	0.00	2.24
6051	7190	3.397955	ACAACTTCCCACCTCCTTTGTAT	59.602	43.478	0.00	0.00	0.00	2.29
6052	7191	2.781174	ACAACTTCCCACCTCCTTTGTA	59.219	45.455	0.00	0.00	0.00	2.41
6053	7192	1.569072	ACAACTTCCCACCTCCTTTGT	59.431	47.619	0.00	0.00	0.00	2.83
6054	7193	2.364972	ACAACTTCCCACCTCCTTTG	57.635	50.000	0.00	0.00	0.00	2.77
6055	7194	2.781174	TGTACAACTTCCCACCTCCTTT	59.219	45.455	0.00	0.00	0.00	3.11
6056	7195	2.372172	CTGTACAACTTCCCACCTCCTT	59.628	50.000	0.00	0.00	0.00	3.36
6057	7196	1.978580	CTGTACAACTTCCCACCTCCT	59.021	52.381	0.00	0.00	0.00	3.69
6058	7197	1.697982	ACTGTACAACTTCCCACCTCC	59.302	52.381	0.00	0.00	0.00	4.30
6059	7198	2.104281	ACACTGTACAACTTCCCACCTC	59.896	50.000	0.00	0.00	0.00	3.85
6060	7199	2.124411	ACACTGTACAACTTCCCACCT	58.876	47.619	0.00	0.00	0.00	4.00
6061	7200	2.632987	ACACTGTACAACTTCCCACC	57.367	50.000	0.00	0.00	0.00	4.61
6062	7201	4.062677	TGTACACTGTACAACTTCCCAC	57.937	45.455	17.96	0.00	0.00	4.61
6063	7202	4.699637	CTTGTACACTGTACAACTTCCCA	58.300	43.478	24.76	8.53	34.21	4.37
6064	7203	3.497262	GCTTGTACACTGTACAACTTCCC	59.503	47.826	24.76	11.21	34.21	3.97
6065	7204	4.377897	AGCTTGTACACTGTACAACTTCC	58.622	43.478	24.76	15.40	34.21	3.46
6066	7205	5.986004	AAGCTTGTACACTGTACAACTTC	57.014	39.130	24.76	17.68	34.21	3.01
6067	7206	6.365247	CGATAAGCTTGTACACTGTACAACTT	59.635	38.462	28.90	28.90	35.34	2.66
6068	7207	5.862323	CGATAAGCTTGTACACTGTACAACT	59.138	40.000	24.76	22.15	34.21	3.16
6069	7208	5.444218	GCGATAAGCTTGTACACTGTACAAC	60.444	44.000	24.76	20.80	44.04	3.32
6070	7209	4.624024	GCGATAAGCTTGTACACTGTACAA	59.376	41.667	26.10	26.10	44.04	2.41
6071	7210	4.171005	GCGATAAGCTTGTACACTGTACA	58.829	43.478	16.61	16.61	44.04	2.90
6072	7211	4.756868	GCGATAAGCTTGTACACTGTAC	57.243	45.455	9.86	11.82	44.04	2.90
6073	7212	4.676986	CAGGCGATAAGCTTGTACACTGTA	60.677	45.833	9.86	0.00	46.43	2.74
6074	7213	3.923053	CAGGCGATAAGCTTGTACACTGT	60.923	47.826	9.86	0.00	46.43	3.55
6075	7214	2.604914	CAGGCGATAAGCTTGTACACTG	59.395	50.000	9.86	8.41	46.43	3.66
6076	7215	2.893637	CAGGCGATAAGCTTGTACACT	58.106	47.619	9.86	0.00	46.43	3.55
6086	7225	2.035449	TCCCGTAATGACAGGCGATAAG	59.965	50.000	0.00	0.00	0.00	1.73
6087	7226	2.033372	TCCCGTAATGACAGGCGATAA	58.967	47.619	0.00	0.00	0.00	1.75
6088	7227	1.338973	GTCCCGTAATGACAGGCGATA	59.661	52.381	0.00	0.00	32.91	2.92
6089	7228	0.104304	GTCCCGTAATGACAGGCGAT	59.896	55.000	0.00	0.00	32.91	4.58
6090	7229	1.252215	TGTCCCGTAATGACAGGCGA	61.252	55.000	0.00	0.00	37.80	5.54
6091	7230	0.390603	TTGTCCCGTAATGACAGGCG	60.391	55.000	0.00	0.00	43.14	5.52
6092	7231	1.816074	TTTGTCCCGTAATGACAGGC	58.184	50.000	0.00	0.00	43.14	4.85
6093	7232	2.607635	CGATTTGTCCCGTAATGACAGG	59.392	50.000	0.00	0.00	43.14	4.00
6094	7233	2.030457	GCGATTTGTCCCGTAATGACAG	59.970	50.000	0.00	0.00	43.14	3.51
6095	7234	2.004017	GCGATTTGTCCCGTAATGACA	58.996	47.619	0.00	0.00	40.80	3.58
6096	7235	2.004017	TGCGATTTGTCCCGTAATGAC	58.996	47.619	0.00	0.00	0.00	3.06
6097	7236	2.388310	TGCGATTTGTCCCGTAATGA	57.612	45.000	0.00	0.00	0.00	2.57
6098	7237	3.691049	AATGCGATTTGTCCCGTAATG	57.309	42.857	0.00	0.00	0.00	1.90
6099	7238	5.821516	TTTAATGCGATTTGTCCCGTAAT	57.178	34.783	0.00	0.00	0.00	1.89
6100	7239	5.574082	CATTTAATGCGATTTGTCCCGTAA	58.426	37.500	0.00	0.00	0.00	3.18
6101	7240	5.163302	CATTTAATGCGATTTGTCCCGTA	57.837	39.130	0.00	0.00	0.00	4.02
6102	7241	4.027572	CATTTAATGCGATTTGTCCCGT	57.972	40.909	0.00	0.00	0.00	5.28
6115	7254	6.425114	AGGACATCTAAGTAGCGCATTTAATG	59.575	38.462	11.47	10.57	0.00	1.90
6116	7255	6.525629	AGGACATCTAAGTAGCGCATTTAAT	58.474	36.000	11.47	0.00	0.00	1.40
6117	7256	5.914033	AGGACATCTAAGTAGCGCATTTAA	58.086	37.500	11.47	0.00	0.00	1.52
6118	7257	5.302059	AGAGGACATCTAAGTAGCGCATTTA	59.698	40.000	11.47	4.08	36.10	1.40
6119	7258	4.100189	AGAGGACATCTAAGTAGCGCATTT	59.900	41.667	11.47	2.92	36.10	2.32
6120	7259	3.639094	AGAGGACATCTAAGTAGCGCATT	59.361	43.478	11.47	3.68	36.10	3.56
6121	7260	3.226777	AGAGGACATCTAAGTAGCGCAT	58.773	45.455	11.47	0.00	36.10	4.73
6122	7261	2.656002	AGAGGACATCTAAGTAGCGCA	58.344	47.619	11.47	0.00	36.10	6.09
6123	7262	3.719173	AAGAGGACATCTAAGTAGCGC	57.281	47.619	0.00	0.00	37.23	5.92
6124	7263	6.380095	AAGTAAGAGGACATCTAAGTAGCG	57.620	41.667	0.00	0.00	37.23	4.26
6125	7264	9.902196	GATAAAGTAAGAGGACATCTAAGTAGC	57.098	37.037	0.00	0.00	37.23	3.58
6127	7266	9.064706	CCGATAAAGTAAGAGGACATCTAAGTA	57.935	37.037	0.00	0.00	37.23	2.24
6128	7267	7.014422	CCCGATAAAGTAAGAGGACATCTAAGT	59.986	40.741	0.00	0.00	37.23	2.24
6129	7268	7.230913	TCCCGATAAAGTAAGAGGACATCTAAG	59.769	40.741	0.00	0.00	37.23	2.18
6130	7269	7.064866	TCCCGATAAAGTAAGAGGACATCTAA	58.935	38.462	0.00	0.00	37.23	2.10
6131	7270	6.607970	TCCCGATAAAGTAAGAGGACATCTA	58.392	40.000	0.00	0.00	37.23	1.98
6132	7271	5.455872	TCCCGATAAAGTAAGAGGACATCT	58.544	41.667	0.00	0.00	41.27	2.90
6133	7272	5.786264	TCCCGATAAAGTAAGAGGACATC	57.214	43.478	0.00	0.00	0.00	3.06
6134	7273	5.012148	CCATCCCGATAAAGTAAGAGGACAT	59.988	44.000	0.00	0.00	0.00	3.06
6135	7274	4.344102	CCATCCCGATAAAGTAAGAGGACA	59.656	45.833	0.00	0.00	0.00	4.02
6136	7275	4.344390	ACCATCCCGATAAAGTAAGAGGAC	59.656	45.833	0.00	0.00	0.00	3.85
6137	7276	4.553678	ACCATCCCGATAAAGTAAGAGGA	58.446	43.478	0.00	0.00	0.00	3.71
6138	7277	4.957684	ACCATCCCGATAAAGTAAGAGG	57.042	45.455	0.00	0.00	0.00	3.69
6139	7278	5.919141	CGTTACCATCCCGATAAAGTAAGAG	59.081	44.000	0.00	0.00	0.00	2.85
6140	7279	5.593909	TCGTTACCATCCCGATAAAGTAAGA	59.406	40.000	0.00	0.00	0.00	2.10
6141	7280	5.835257	TCGTTACCATCCCGATAAAGTAAG	58.165	41.667	0.00	0.00	0.00	2.34
6142	7281	5.221303	CCTCGTTACCATCCCGATAAAGTAA	60.221	44.000	0.00	0.00	0.00	2.24
6143	7282	4.279169	CCTCGTTACCATCCCGATAAAGTA	59.721	45.833	0.00	0.00	0.00	2.24
6144	7283	3.069158	CCTCGTTACCATCCCGATAAAGT	59.931	47.826	0.00	0.00	0.00	2.66
6145	7284	3.650139	CCTCGTTACCATCCCGATAAAG	58.350	50.000	0.00	0.00	0.00	1.85
6146	7285	2.224113	GCCTCGTTACCATCCCGATAAA	60.224	50.000	0.00	0.00	0.00	1.40
6147	7286	1.342174	GCCTCGTTACCATCCCGATAA	59.658	52.381	0.00	0.00	0.00	1.75
6148	7287	0.963962	GCCTCGTTACCATCCCGATA	59.036	55.000	0.00	0.00	0.00	2.92
6149	7288	1.746517	GCCTCGTTACCATCCCGAT	59.253	57.895	0.00	0.00	0.00	4.18
6150	7289	2.428925	GGCCTCGTTACCATCCCGA	61.429	63.158	0.00	0.00	0.00	5.14
6151	7290	2.108362	GGCCTCGTTACCATCCCG	59.892	66.667	0.00	0.00	0.00	5.14
6152	7291	2.509422	GGGCCTCGTTACCATCCC	59.491	66.667	0.84	0.00	0.00	3.85
6153	7292	2.108362	CGGGCCTCGTTACCATCC	59.892	66.667	0.84	0.00	0.00	3.51
6175	7314	3.255379	GACGAAGCGGCGATGGAC	61.255	66.667	12.98	0.00	34.83	4.02
6176	7315	3.411418	GAGACGAAGCGGCGATGGA	62.411	63.158	12.98	0.00	41.28	3.41
6177	7316	2.956964	GAGACGAAGCGGCGATGG	60.957	66.667	12.98	2.27	41.28	3.51
6178	7317	3.315521	CGAGACGAAGCGGCGATG	61.316	66.667	12.98	0.00	41.28	3.84
6184	7323	4.161976	TCGGAGCGAGACGAAGCG	62.162	66.667	0.00	0.00	36.01	4.68
6185	7324	2.577378	GTCGGAGCGAGACGAAGC	60.577	66.667	0.00	0.00	41.17	3.86
6186	7325	1.512310	GTGTCGGAGCGAGACGAAG	60.512	63.158	0.00	0.00	40.02	3.79
6187	7326	2.559840	GTGTCGGAGCGAGACGAA	59.440	61.111	0.00	0.00	40.02	3.85
6196	7335	4.778415	CCTGGACGCGTGTCGGAG	62.778	72.222	20.70	18.63	46.49	4.63
6199	7338	3.834447	TTGACCTGGACGCGTGTCG	62.834	63.158	20.70	11.49	46.49	4.35
6200	7339	1.374252	ATTGACCTGGACGCGTGTC	60.374	57.895	20.70	20.76	44.72	3.67
6201	7340	1.667830	CATTGACCTGGACGCGTGT	60.668	57.895	20.70	8.43	0.00	4.49
6202	7341	1.354337	CTCATTGACCTGGACGCGTG	61.354	60.000	20.70	4.12	0.00	5.34
6203	7342	1.079819	CTCATTGACCTGGACGCGT	60.080	57.895	13.85	13.85	0.00	6.01
6204	7343	1.811266	CCTCATTGACCTGGACGCG	60.811	63.158	3.53	3.53	0.00	6.01
6205	7344	2.109126	GCCTCATTGACCTGGACGC	61.109	63.158	0.00	0.00	0.00	5.19
6206	7345	0.107508	ATGCCTCATTGACCTGGACG	60.108	55.000	0.00	0.00	0.00	4.79
6207	7346	1.386533	CATGCCTCATTGACCTGGAC	58.613	55.000	0.00	0.00	0.00	4.02
6208	7347	0.394762	GCATGCCTCATTGACCTGGA	60.395	55.000	6.36	0.00	0.00	3.86
6209	7348	0.681887	TGCATGCCTCATTGACCTGG	60.682	55.000	16.68	0.00	0.00	4.45
6210	7349	0.738975	CTGCATGCCTCATTGACCTG	59.261	55.000	16.68	0.00	0.00	4.00
6211	7350	0.330604	ACTGCATGCCTCATTGACCT	59.669	50.000	16.68	0.00	0.00	3.85
6212	7351	0.454600	CACTGCATGCCTCATTGACC	59.545	55.000	16.68	0.00	0.00	4.02
6232	7371	1.077212	AGCCAGCAAGCCTACATGG	60.077	57.895	0.00	0.00	39.35	3.66
6233	7372	2.001361	GCAGCCAGCAAGCCTACATG	62.001	60.000	0.00	0.00	44.79	3.21
6234	7373	1.751927	GCAGCCAGCAAGCCTACAT	60.752	57.895	0.00	0.00	44.79	2.29
6235	7374	2.360350	GCAGCCAGCAAGCCTACA	60.360	61.111	0.00	0.00	44.79	2.74
6262	7401	4.329545	TGAAGACCCTGCCGCCAC	62.330	66.667	0.00	0.00	0.00	5.01
6263	7402	4.329545	GTGAAGACCCTGCCGCCA	62.330	66.667	0.00	0.00	0.00	5.69
6264	7403	3.842925	TTGTGAAGACCCTGCCGCC	62.843	63.158	0.00	0.00	0.00	6.13
6265	7404	1.856265	CTTTGTGAAGACCCTGCCGC	61.856	60.000	0.00	0.00	34.71	6.53
6266	7405	0.250295	TCTTTGTGAAGACCCTGCCG	60.250	55.000	0.00	0.00	36.99	5.69
6267	7406	2.087646	GATCTTTGTGAAGACCCTGCC	58.912	52.381	0.00	0.00	44.27	4.85
6268	7407	2.746362	CAGATCTTTGTGAAGACCCTGC	59.254	50.000	0.00	0.00	44.27	4.85
6269	7408	2.746362	GCAGATCTTTGTGAAGACCCTG	59.254	50.000	0.00	12.31	44.27	4.45
6270	7409	2.373169	TGCAGATCTTTGTGAAGACCCT	59.627	45.455	0.00	0.00	44.27	4.34
6271	7410	2.783135	TGCAGATCTTTGTGAAGACCC	58.217	47.619	0.00	0.00	44.27	4.46
6272	7411	3.427233	GCATGCAGATCTTTGTGAAGACC	60.427	47.826	14.21	0.00	44.27	3.85
6273	7412	3.427233	GGCATGCAGATCTTTGTGAAGAC	60.427	47.826	21.36	0.00	44.27	3.01
6274	7413	2.751259	GGCATGCAGATCTTTGTGAAGA	59.249	45.455	21.36	0.00	45.45	2.87
6275	7414	2.490509	TGGCATGCAGATCTTTGTGAAG	59.509	45.455	21.36	0.00	0.00	3.02
6276	7415	2.229543	GTGGCATGCAGATCTTTGTGAA	59.770	45.455	21.36	0.00	0.00	3.18
6277	7416	1.814394	GTGGCATGCAGATCTTTGTGA	59.186	47.619	21.36	0.00	0.00	3.58
6278	7417	1.135199	GGTGGCATGCAGATCTTTGTG	60.135	52.381	21.36	0.00	0.00	3.33
6279	7418	1.180029	GGTGGCATGCAGATCTTTGT	58.820	50.000	21.36	0.00	0.00	2.83
6280	7419	1.135199	GTGGTGGCATGCAGATCTTTG	60.135	52.381	21.36	0.00	0.00	2.77
6281	7420	1.180029	GTGGTGGCATGCAGATCTTT	58.820	50.000	21.36	0.00	0.00	2.52
6282	7421	0.038599	TGTGGTGGCATGCAGATCTT	59.961	50.000	21.36	0.00	0.00	2.40
6283	7422	0.679002	GTGTGGTGGCATGCAGATCT	60.679	55.000	21.36	0.00	0.00	2.75
6284	7423	0.961857	TGTGTGGTGGCATGCAGATC	60.962	55.000	21.36	6.12	0.00	2.75
6285	7424	0.963856	CTGTGTGGTGGCATGCAGAT	60.964	55.000	21.36	0.00	0.00	2.90
6286	7425	1.601477	CTGTGTGGTGGCATGCAGA	60.601	57.895	21.36	1.62	0.00	4.26
6287	7426	2.632544	CCTGTGTGGTGGCATGCAG	61.633	63.158	21.36	5.17	0.00	4.41
6288	7427	2.598099	CCTGTGTGGTGGCATGCA	60.598	61.111	21.36	2.54	0.00	3.96
6297	7436	1.070758	ACTAGTCAAGCACCTGTGTGG	59.929	52.381	0.00	0.00	42.99	4.17
6298	7437	2.533266	ACTAGTCAAGCACCTGTGTG	57.467	50.000	0.00	0.00	45.65	3.82
6299	7438	2.545952	CGAACTAGTCAAGCACCTGTGT	60.546	50.000	0.00	0.00	0.00	3.72
6300	7439	2.061773	CGAACTAGTCAAGCACCTGTG	58.938	52.381	0.00	0.00	0.00	3.66
6301	7440	1.687123	ACGAACTAGTCAAGCACCTGT	59.313	47.619	0.00	0.00	0.00	4.00
6302	7441	2.440539	ACGAACTAGTCAAGCACCTG	57.559	50.000	0.00	0.00	0.00	4.00
6303	7442	3.470645	AAACGAACTAGTCAAGCACCT	57.529	42.857	0.00	0.00	0.00	4.00
6304	7443	4.304939	ACTAAACGAACTAGTCAAGCACC	58.695	43.478	0.00	0.00	0.00	5.01
6305	7444	5.344396	GGTACTAAACGAACTAGTCAAGCAC	59.656	44.000	0.00	0.00	31.98	4.40
6306	7445	5.464168	GGTACTAAACGAACTAGTCAAGCA	58.536	41.667	0.00	0.00	31.98	3.91
6307	7446	4.861462	GGGTACTAAACGAACTAGTCAAGC	59.139	45.833	0.00	0.00	31.98	4.01
6308	7447	5.860716	GTGGGTACTAAACGAACTAGTCAAG	59.139	44.000	0.00	0.00	31.98	3.02
6309	7448	5.562696	CGTGGGTACTAAACGAACTAGTCAA	60.563	44.000	0.00	0.00	39.64	3.18
6310	7449	4.083324	CGTGGGTACTAAACGAACTAGTCA	60.083	45.833	0.00	0.00	39.64	3.41
6311	7450	4.083271	ACGTGGGTACTAAACGAACTAGTC	60.083	45.833	17.93	0.00	39.64	2.59
6312	7451	3.821033	ACGTGGGTACTAAACGAACTAGT	59.179	43.478	17.93	0.00	39.64	2.57
6313	7452	4.425577	ACGTGGGTACTAAACGAACTAG	57.574	45.455	17.93	0.00	39.64	2.57
6314	7453	5.291293	GTACGTGGGTACTAAACGAACTA	57.709	43.478	17.93	2.87	44.53	2.24
6315	7454	4.160736	GTACGTGGGTACTAAACGAACT	57.839	45.455	17.93	3.61	44.53	3.01
6326	7465	0.248012	CACATGGCAGTACGTGGGTA	59.752	55.000	0.00	0.00	0.00	3.69
6327	7466	1.003839	CACATGGCAGTACGTGGGT	60.004	57.895	0.00	0.00	0.00	4.51
6328	7467	1.745115	CCACATGGCAGTACGTGGG	60.745	63.158	16.27	0.89	44.26	4.61
6329	7468	1.745115	CCCACATGGCAGTACGTGG	60.745	63.158	16.84	16.84	46.93	4.94
6330	7469	0.248012	TACCCACATGGCAGTACGTG	59.752	55.000	0.00	0.00	37.83	4.49
6331	7470	0.248289	GTACCCACATGGCAGTACGT	59.752	55.000	0.00	0.00	37.83	3.57
6332	7471	3.059603	GTACCCACATGGCAGTACG	57.940	57.895	0.00	0.00	37.83	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.