Multiple sequence alignment - TraesCS3B01G357900

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G357900 chr3B 100.000 6351 0 0 1 6351 569595735 569602085 0.000000e+00 11729.0
1 TraesCS3B01G357900 chr3B 90.545 1100 43 13 1980 3055 784575162 784574100 0.000000e+00 1399.0
2 TraesCS3B01G357900 chr3B 90.705 1022 59 8 3214 4205 784574104 784573089 0.000000e+00 1328.0
3 TraesCS3B01G357900 chr3B 90.288 659 50 10 1 647 546383159 546382503 0.000000e+00 850.0
4 TraesCS3B01G357900 chr3B 95.652 230 9 1 1266 1495 761169068 761169296 1.010000e-97 368.0
5 TraesCS3B01G357900 chr3B 95.531 179 4 3 4415 4591 703118528 703118704 3.750000e-72 283.0
6 TraesCS3B01G357900 chr3B 91.860 86 4 3 2149 2233 507274424 507274507 4.020000e-22 117.0
7 TraesCS3B01G357900 chr2D 91.563 3461 243 25 823 4241 229310596 229314049 0.000000e+00 4728.0
8 TraesCS3B01G357900 chr2D 89.466 1310 108 16 4590 5876 229314322 229315624 0.000000e+00 1628.0
9 TraesCS3B01G357900 chr2D 88.550 1345 90 16 4590 5902 588835798 588837110 0.000000e+00 1572.0
10 TraesCS3B01G357900 chr2D 89.146 691 67 6 3559 4241 65813215 65813905 0.000000e+00 854.0
11 TraesCS3B01G357900 chr2D 88.235 697 62 15 1 694 72813640 72814319 0.000000e+00 815.0
12 TraesCS3B01G357900 chr2D 88.742 453 47 4 5902 6351 316603933 316603482 9.310000e-153 551.0
13 TraesCS3B01G357900 chr2D 95.604 273 12 0 1266 1538 616177604 616177876 7.560000e-119 438.0
14 TraesCS3B01G357900 chr2D 94.086 186 9 1 644 827 20826749 20826564 1.350000e-71 281.0
15 TraesCS3B01G357900 chr2D 92.486 173 13 0 4242 4414 229314129 229314301 1.370000e-61 248.0
16 TraesCS3B01G357900 chr2D 86.154 195 21 3 4242 4430 65813986 65814180 8.350000e-49 206.0
17 TraesCS3B01G357900 chr2D 96.190 105 4 0 3875 3979 616177873 616177977 8.470000e-39 172.0
18 TraesCS3B01G357900 chr1B 96.368 2643 85 8 1 2634 632750546 632753186 0.000000e+00 4338.0
19 TraesCS3B01G357900 chr1B 96.363 1842 60 3 2595 4430 632753182 632755022 0.000000e+00 3024.0
20 TraesCS3B01G357900 chr1B 93.388 1346 52 10 4590 5903 632755021 632756361 0.000000e+00 1958.0
21 TraesCS3B01G357900 chr1B 85.602 382 43 10 1617 1987 41449554 41449174 2.150000e-104 390.0
22 TraesCS3B01G357900 chr1B 85.993 307 14 11 1672 1952 41640782 41640479 1.030000e-77 302.0
23 TraesCS3B01G357900 chr1B 97.661 171 2 2 4424 4592 46873040 46872870 6.230000e-75 292.0
24 TraesCS3B01G357900 chr1B 96.364 55 1 1 823 877 679045715 679045768 8.770000e-14 89.8
25 TraesCS3B01G357900 chr1B 93.103 58 3 1 820 877 674658123 674658179 4.080000e-12 84.2
26 TraesCS3B01G357900 chr3A 95.213 1713 76 5 1505 3215 295950724 295949016 0.000000e+00 2704.0
27 TraesCS3B01G357900 chr3A 90.579 1348 85 21 4590 5902 295947655 295946315 0.000000e+00 1748.0
28 TraesCS3B01G357900 chr3A 92.559 1223 61 7 3214 4413 295948892 295947677 0.000000e+00 1727.0
29 TraesCS3B01G357900 chr3A 89.547 794 56 10 1 789 499508174 499507403 0.000000e+00 981.0
30 TraesCS3B01G357900 chr3A 95.385 390 17 1 2248 2637 18663048 18662660 2.520000e-173 619.0
31 TraesCS3B01G357900 chr7A 95.032 1570 73 5 1505 3071 690659516 690661083 0.000000e+00 2462.0
32 TraesCS3B01G357900 chr7A 86.522 601 53 13 3205 3779 627553908 627553310 2.500000e-178 636.0
33 TraesCS3B01G357900 chr7A 95.897 390 15 1 2248 2637 107343365 107342977 1.160000e-176 630.0
34 TraesCS3B01G357900 chr7A 97.076 171 4 1 4425 4594 47626468 47626298 2.900000e-73 287.0
35 TraesCS3B01G357900 chr7A 96.532 173 4 2 4425 4595 97887583 97887411 1.040000e-72 285.0
36 TraesCS3B01G357900 chr7A 96.532 173 4 2 4424 4594 344866592 344866764 1.040000e-72 285.0
37 TraesCS3B01G357900 chr7A 96.023 176 4 3 4425 4597 226849931 226849756 3.750000e-72 283.0
38 TraesCS3B01G357900 chr4B 91.261 1316 80 9 2960 4244 342968532 342967221 0.000000e+00 1760.0
39 TraesCS3B01G357900 chr4B 94.595 629 27 2 3809 4430 186426830 186427458 0.000000e+00 966.0
40 TraesCS3B01G357900 chr4B 94.677 620 32 1 1369 1987 342969376 342968757 0.000000e+00 961.0
41 TraesCS3B01G357900 chr4B 95.652 230 10 0 1266 1495 221458773 221459002 2.800000e-98 370.0
42 TraesCS3B01G357900 chr4B 95.580 181 5 3 4416 4594 667574431 667574252 2.900000e-73 287.0
43 TraesCS3B01G357900 chr6B 90.502 1316 92 8 2960 4244 575574215 575572902 0.000000e+00 1707.0
44 TraesCS3B01G357900 chr6B 93.838 1071 43 5 2668 3715 713228549 713227479 0.000000e+00 1591.0
45 TraesCS3B01G357900 chr6B 94.595 629 27 2 3809 4430 302278968 302279596 0.000000e+00 966.0
46 TraesCS3B01G357900 chr6B 94.277 629 29 2 3809 4430 713227482 713226854 0.000000e+00 955.0
47 TraesCS3B01G357900 chr6B 93.255 341 18 2 4590 4930 713226855 713226520 1.230000e-136 497.0
48 TraesCS3B01G357900 chr6B 87.427 342 37 3 877 1214 713068026 713067687 7.720000e-104 388.0
49 TraesCS3B01G357900 chr6B 91.089 101 9 0 1881 1981 575574537 575574437 3.090000e-28 137.0
50 TraesCS3B01G357900 chr6B 96.364 55 1 1 823 877 715134856 715134909 8.770000e-14 89.8
51 TraesCS3B01G357900 chr6A 94.211 1071 39 8 2668 3715 463742414 463743484 0.000000e+00 1613.0
52 TraesCS3B01G357900 chr6A 90.501 1158 88 13 4590 5736 47591487 47590341 0.000000e+00 1509.0
53 TraesCS3B01G357900 chr6A 93.700 1000 58 2 4590 5588 463744110 463745105 0.000000e+00 1493.0
54 TraesCS3B01G357900 chr6A 87.862 1071 94 11 3205 4244 4927849 4926784 0.000000e+00 1225.0
55 TraesCS3B01G357900 chr6A 94.929 631 23 2 3809 4430 463743481 463744111 0.000000e+00 979.0
56 TraesCS3B01G357900 chr6A 94.595 629 27 2 3809 4430 47592114 47591486 0.000000e+00 966.0
57 TraesCS3B01G357900 chr6A 82.515 652 67 21 3588 4224 51951258 51951877 4.360000e-146 529.0
58 TraesCS3B01G357900 chr6A 78.439 538 66 17 920 1436 613926799 613927307 8.000000e-79 305.0
59 TraesCS3B01G357900 chr6A 96.000 175 5 2 4427 4599 581886789 581886963 3.750000e-72 283.0
60 TraesCS3B01G357900 chr6A 95.954 173 5 2 4421 4591 85270467 85270639 4.850000e-71 279.0
61 TraesCS3B01G357900 chr6A 96.471 170 4 2 4425 4593 333960331 333960163 4.850000e-71 279.0
62 TraesCS3B01G357900 chr6A 96.970 165 4 1 4429 4592 596588287 596588451 6.270000e-70 276.0
63 TraesCS3B01G357900 chr6A 93.122 189 8 5 4429 4614 528995248 528995062 8.110000e-69 272.0
64 TraesCS3B01G357900 chr6A 87.302 189 18 3 4248 4430 4926700 4926512 1.790000e-50 211.0
65 TraesCS3B01G357900 chr1A 94.211 1071 39 7 2668 3715 577674751 577673681 0.000000e+00 1613.0
66 TraesCS3B01G357900 chr1A 87.807 1345 101 21 4590 5902 232831153 232832466 0.000000e+00 1517.0
67 TraesCS3B01G357900 chr1A 93.200 1000 62 3 4590 5588 577672895 577671901 0.000000e+00 1465.0
68 TraesCS3B01G357900 chr1A 94.419 430 17 2 4008 4430 577673323 577672894 0.000000e+00 654.0
69 TraesCS3B01G357900 chr1A 94.872 390 19 1 2248 2637 585606368 585605980 5.440000e-170 608.0
70 TraesCS3B01G357900 chr1A 92.691 301 20 2 5603 5902 18770551 18770252 3.520000e-117 433.0
71 TraesCS3B01G357900 chr1A 92.691 301 21 1 5603 5902 18817371 18817071 3.520000e-117 433.0
72 TraesCS3B01G357900 chr1A 92.691 301 21 1 5603 5902 18899963 18899663 3.520000e-117 433.0
73 TraesCS3B01G357900 chr1A 96.020 201 8 0 3809 4009 577673684 577673484 1.710000e-85 327.0
74 TraesCS3B01G357900 chr1A 97.076 171 4 1 4426 4595 368368489 368368659 2.900000e-73 287.0
75 TraesCS3B01G357900 chr1A 97.590 166 3 1 4427 4591 322177193 322177358 3.750000e-72 283.0
76 TraesCS3B01G357900 chr1A 97.041 169 4 1 4424 4591 494815410 494815578 3.750000e-72 283.0
77 TraesCS3B01G357900 chr1A 97.576 165 3 1 4428 4591 219372627 219372791 1.350000e-71 281.0
78 TraesCS3B01G357900 chr1A 94.565 184 7 2 4429 4611 575456909 575456728 1.350000e-71 281.0
79 TraesCS3B01G357900 chr1A 97.006 167 4 1 4428 4593 33222026 33222192 4.850000e-71 279.0
80 TraesCS3B01G357900 chr1A 95.906 171 5 2 4424 4592 294339517 294339687 6.270000e-70 276.0
81 TraesCS3B01G357900 chr1A 92.727 55 3 1 823 877 581589660 581589713 1.900000e-10 78.7
82 TraesCS3B01G357900 chr2A 93.931 1071 42 5 2668 3715 94388626 94387556 0.000000e+00 1596.0
83 TraesCS3B01G357900 chr2A 93.400 1000 61 2 4590 5588 94386932 94385937 0.000000e+00 1476.0
84 TraesCS3B01G357900 chr2A 94.595 629 27 2 3809 4430 94387559 94386931 0.000000e+00 966.0
85 TraesCS3B01G357900 chr2A 96.532 173 4 2 4420 4591 478761350 478761521 1.040000e-72 285.0
86 TraesCS3B01G357900 chr2A 95.028 181 5 3 4416 4592 709834343 709834523 1.350000e-71 281.0
87 TraesCS3B01G357900 chr5D 88.739 1332 93 15 4590 5902 448352956 448354249 0.000000e+00 1576.0
88 TraesCS3B01G357900 chr5D 91.822 807 48 7 1 789 419927710 419926904 0.000000e+00 1109.0
89 TraesCS3B01G357900 chr5D 89.127 699 60 13 1 694 107314818 107314131 0.000000e+00 856.0
90 TraesCS3B01G357900 chr5D 91.032 591 30 4 3205 3772 524292261 524292851 0.000000e+00 776.0
91 TraesCS3B01G357900 chr5D 88.325 591 45 8 3205 3772 289583310 289582721 0.000000e+00 688.0
92 TraesCS3B01G357900 chr5D 88.742 453 47 4 5902 6351 462522851 462522400 9.310000e-153 551.0
93 TraesCS3B01G357900 chr5D 93.548 186 10 1 644 827 551207184 551207369 6.270000e-70 276.0
94 TraesCS3B01G357900 chr5D 96.407 167 5 1 4429 4594 438829652 438829818 2.260000e-69 274.0
95 TraesCS3B01G357900 chr5D 95.322 171 6 2 4426 4594 454729765 454729595 2.920000e-68 270.0
96 TraesCS3B01G357900 chr5D 88.079 151 14 3 2005 2152 563969914 563969765 6.540000e-40 176.0
97 TraesCS3B01G357900 chr5D 86.047 172 10 3 4242 4413 63781728 63781885 8.470000e-39 172.0
98 TraesCS3B01G357900 chr6D 88.235 1071 94 11 3205 4244 225662995 225661926 0.000000e+00 1251.0
99 TraesCS3B01G357900 chr6D 91.413 757 49 9 1 742 380600177 380599422 0.000000e+00 1024.0
100 TraesCS3B01G357900 chr6D 85.465 688 80 14 3552 4224 41523701 41524383 0.000000e+00 699.0
101 TraesCS3B01G357900 chr6D 84.502 613 71 16 877 1475 467815803 467815201 9.180000e-163 584.0
102 TraesCS3B01G357900 chr6D 88.914 451 47 3 5902 6351 368970055 368970503 2.590000e-153 553.0
103 TraesCS3B01G357900 chr6D 90.127 314 25 4 4590 4903 225661655 225661348 2.760000e-108 403.0
104 TraesCS3B01G357900 chr6D 96.364 165 5 1 4429 4592 8674490 8674654 2.920000e-68 270.0
105 TraesCS3B01G357900 chr6D 94.350 177 7 3 4416 4591 15354544 15354718 1.050000e-67 268.0
106 TraesCS3B01G357900 chr6D 87.029 239 15 8 3205 3427 420961403 420961165 8.170000e-64 255.0
107 TraesCS3B01G357900 chr6D 89.231 195 15 3 4242 4430 225661848 225661654 8.230000e-59 239.0
108 TraesCS3B01G357900 chr6D 91.964 112 8 1 3422 3532 41523525 41523636 8.530000e-34 156.0
109 TraesCS3B01G357900 chr4A 90.036 843 64 11 1 827 493271007 493270169 0.000000e+00 1074.0
110 TraesCS3B01G357900 chr4A 98.171 164 2 1 4429 4591 15911919 15912082 1.040000e-72 285.0
111 TraesCS3B01G357900 chr4A 96.000 175 5 2 4422 4594 93926815 93926641 3.750000e-72 283.0
112 TraesCS3B01G357900 chr4A 93.956 182 9 2 4412 4591 717299663 717299482 2.260000e-69 274.0
113 TraesCS3B01G357900 chr2B 90.545 825 55 19 1 804 43956500 43957322 0.000000e+00 1070.0
114 TraesCS3B01G357900 chr2B 98.077 52 0 1 826 877 737205721 737205671 8.770000e-14 89.8
115 TraesCS3B01G357900 chr5A 89.929 844 63 12 1 827 671853325 671854163 0.000000e+00 1068.0
116 TraesCS3B01G357900 chr5A 95.128 390 18 1 2248 2637 415814962 415814574 1.170000e-171 614.0
117 TraesCS3B01G357900 chr5A 92.953 298 20 1 5607 5903 446281654 446281357 3.520000e-117 433.0
118 TraesCS3B01G357900 chr5A 94.505 182 8 2 4413 4592 693314768 693314949 4.850000e-71 279.0
119 TraesCS3B01G357900 chr5A 92.683 82 6 0 2152 2233 427829161 427829080 1.120000e-22 119.0
120 TraesCS3B01G357900 chr7D 91.720 785 38 11 2960 3721 292420409 292421189 0.000000e+00 1064.0
121 TraesCS3B01G357900 chr7D 91.788 755 48 11 1 742 7981342 7980589 0.000000e+00 1038.0
122 TraesCS3B01G357900 chr7D 88.978 499 30 5 924 1422 292418768 292419241 1.520000e-165 593.0
123 TraesCS3B01G357900 chr7D 90.244 451 43 1 5902 6351 507339735 507340185 7.090000e-164 588.0
124 TraesCS3B01G357900 chr7D 88.938 452 47 3 5902 6351 494370898 494371348 7.190000e-154 555.0
125 TraesCS3B01G357900 chr7D 88.914 451 49 1 5902 6351 507404231 507404681 7.190000e-154 555.0
126 TraesCS3B01G357900 chr7D 88.470 451 51 1 5902 6351 537715931 537716381 1.560000e-150 544.0
127 TraesCS3B01G357900 chr7D 94.086 186 9 1 644 827 26670279 26670094 1.350000e-71 281.0
128 TraesCS3B01G357900 chr7D 94.086 186 9 1 644 827 613746700 613746885 1.350000e-71 281.0
129 TraesCS3B01G357900 chr7D 93.548 186 10 1 644 827 40630786 40630601 6.270000e-70 276.0
130 TraesCS3B01G357900 chr7D 89.773 88 9 0 2151 2238 404156004 404156091 5.200000e-21 113.0
131 TraesCS3B01G357900 chr7B 89.943 696 57 12 1 694 680511215 680511899 0.000000e+00 885.0
132 TraesCS3B01G357900 chr7B 96.087 230 8 1 1266 1495 644284500 644284728 2.160000e-99 374.0
133 TraesCS3B01G357900 chr7B 92.857 84 6 0 2150 2233 712722348 712722265 8.650000e-24 122.0
134 TraesCS3B01G357900 chr7B 96.154 52 1 1 826 877 123706668 123706718 4.080000e-12 84.2
135 TraesCS3B01G357900 chr7B 94.545 55 2 1 823 877 123706718 123706771 4.080000e-12 84.2
136 TraesCS3B01G357900 chr5B 88.126 699 66 16 1 694 385242271 385242957 0.000000e+00 815.0
137 TraesCS3B01G357900 chr3D 89.655 580 49 9 3205 3779 8354279 8353706 0.000000e+00 728.0
138 TraesCS3B01G357900 chr3D 88.721 594 41 5 3205 3772 34546194 34546787 0.000000e+00 702.0
139 TraesCS3B01G357900 chr3D 88.742 453 48 3 5902 6351 134293035 134292583 9.310000e-153 551.0
140 TraesCS3B01G357900 chr3D 88.692 451 50 1 5902 6351 504375922 504376372 3.350000e-152 549.0
141 TraesCS3B01G357900 chr3D 93.311 299 19 1 5605 5902 348487979 348488277 2.100000e-119 440.0
142 TraesCS3B01G357900 chr3D 95.882 170 6 1 4427 4595 5800081 5800250 2.260000e-69 274.0
143 TraesCS3B01G357900 chr3D 93.514 185 8 4 4413 4594 214436898 214436715 8.110000e-69 272.0
144 TraesCS3B01G357900 chr3D 93.855 179 9 2 4414 4591 23085022 23084845 1.050000e-67 268.0
145 TraesCS3B01G357900 chr3D 93.407 182 9 2 4429 4609 336588162 336587983 3.770000e-67 267.0
146 TraesCS3B01G357900 chr1D 91.667 372 25 3 1619 1987 25954045 25953677 1.580000e-140 510.0
147 TraesCS3B01G357900 chr1D 94.932 296 14 1 5607 5901 265139859 265139564 4.490000e-126 462.0
148 TraesCS3B01G357900 chr1D 93.688 301 18 1 5605 5904 407155308 407155608 3.490000e-122 449.0
149 TraesCS3B01G357900 chr1D 86.339 366 24 4 3380 3721 2853767 2854130 6.010000e-100 375.0
150 TraesCS3B01G357900 chr1D 95.376 173 6 2 4425 4595 310247097 310246925 2.260000e-69 274.0
151 TraesCS3B01G357900 chr1D 94.737 171 8 1 4427 4596 490423318 490423148 1.360000e-66 265.0
152 TraesCS3B01G357900 chrUn 96.337 273 10 0 1266 1538 21461973 21461701 3.490000e-122 449.0
153 TraesCS3B01G357900 chrUn 95.906 171 5 2 4423 4591 36763661 36763831 6.270000e-70 276.0
154 TraesCS3B01G357900 chrUn 95.906 171 5 2 4423 4591 36800860 36801030 6.270000e-70 276.0
155 TraesCS3B01G357900 chrUn 96.407 167 5 1 4427 4592 95258138 95257972 2.260000e-69 274.0
156 TraesCS3B01G357900 chrUn 96.341 164 5 1 4429 4591 34166996 34166833 1.050000e-67 268.0
157 TraesCS3B01G357900 chrUn 96.341 164 5 1 4429 4591 49324360 49324523 1.050000e-67 268.0
158 TraesCS3B01G357900 chrUn 96.341 164 5 1 4429 4591 83351072 83351235 1.050000e-67 268.0
159 TraesCS3B01G357900 chrUn 95.783 166 6 1 4427 4591 320685800 320685965 3.770000e-67 267.0
160 TraesCS3B01G357900 chrUn 95.758 165 6 1 4429 4592 18805348 18805184 1.360000e-66 265.0
161 TraesCS3B01G357900 chrUn 95.238 168 6 2 4429 4594 75274365 75274532 1.360000e-66 265.0
162 TraesCS3B01G357900 chrUn 96.970 99 3 0 3881 3979 21461698 21461600 3.940000e-37 167.0
163 TraesCS3B01G357900 chr4D 92.929 297 20 1 5607 5902 382844834 382844538 1.260000e-116 431.0
164 TraesCS3B01G357900 chr4D 94.286 175 8 2 4419 4591 420144052 420143878 3.770000e-67 267.0
165 TraesCS3B01G357900 chr4D 92.778 180 11 2 4416 4594 67327660 67327482 6.320000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G357900 chr3B 569595735 569602085 6350 False 11729.000000 11729 100.000000 1 6351 1 chr3B.!!$F2 6350
1 TraesCS3B01G357900 chr3B 784573089 784575162 2073 True 1363.500000 1399 90.625000 1980 4205 2 chr3B.!!$R2 2225
2 TraesCS3B01G357900 chr3B 546382503 546383159 656 True 850.000000 850 90.288000 1 647 1 chr3B.!!$R1 646
3 TraesCS3B01G357900 chr2D 229310596 229315624 5028 False 2201.333333 4728 91.171667 823 5876 3 chr2D.!!$F4 5053
4 TraesCS3B01G357900 chr2D 588835798 588837110 1312 False 1572.000000 1572 88.550000 4590 5902 1 chr2D.!!$F2 1312
5 TraesCS3B01G357900 chr2D 72813640 72814319 679 False 815.000000 815 88.235000 1 694 1 chr2D.!!$F1 693
6 TraesCS3B01G357900 chr2D 65813215 65814180 965 False 530.000000 854 87.650000 3559 4430 2 chr2D.!!$F3 871
7 TraesCS3B01G357900 chr1B 632750546 632756361 5815 False 3106.666667 4338 95.373000 1 5903 3 chr1B.!!$F3 5902
8 TraesCS3B01G357900 chr3A 295946315 295950724 4409 True 2059.666667 2704 92.783667 1505 5902 3 chr3A.!!$R3 4397
9 TraesCS3B01G357900 chr3A 499507403 499508174 771 True 981.000000 981 89.547000 1 789 1 chr3A.!!$R2 788
10 TraesCS3B01G357900 chr7A 690659516 690661083 1567 False 2462.000000 2462 95.032000 1505 3071 1 chr7A.!!$F2 1566
11 TraesCS3B01G357900 chr7A 627553310 627553908 598 True 636.000000 636 86.522000 3205 3779 1 chr7A.!!$R5 574
12 TraesCS3B01G357900 chr4B 342967221 342969376 2155 True 1360.500000 1760 92.969000 1369 4244 2 chr4B.!!$R2 2875
13 TraesCS3B01G357900 chr4B 186426830 186427458 628 False 966.000000 966 94.595000 3809 4430 1 chr4B.!!$F1 621
14 TraesCS3B01G357900 chr6B 713226520 713228549 2029 True 1014.333333 1591 93.790000 2668 4930 3 chr6B.!!$R3 2262
15 TraesCS3B01G357900 chr6B 302278968 302279596 628 False 966.000000 966 94.595000 3809 4430 1 chr6B.!!$F1 621
16 TraesCS3B01G357900 chr6B 575572902 575574537 1635 True 922.000000 1707 90.795500 1881 4244 2 chr6B.!!$R2 2363
17 TraesCS3B01G357900 chr6A 463742414 463745105 2691 False 1361.666667 1613 94.280000 2668 5588 3 chr6A.!!$F6 2920
18 TraesCS3B01G357900 chr6A 47590341 47592114 1773 True 1237.500000 1509 92.548000 3809 5736 2 chr6A.!!$R4 1927
19 TraesCS3B01G357900 chr6A 4926512 4927849 1337 True 718.000000 1225 87.582000 3205 4430 2 chr6A.!!$R3 1225
20 TraesCS3B01G357900 chr6A 51951258 51951877 619 False 529.000000 529 82.515000 3588 4224 1 chr6A.!!$F1 636
21 TraesCS3B01G357900 chr6A 613926799 613927307 508 False 305.000000 305 78.439000 920 1436 1 chr6A.!!$F5 516
22 TraesCS3B01G357900 chr1A 232831153 232832466 1313 False 1517.000000 1517 87.807000 4590 5902 1 chr1A.!!$F3 1312
23 TraesCS3B01G357900 chr1A 577671901 577674751 2850 True 1014.750000 1613 94.462500 2668 5588 4 chr1A.!!$R6 2920
24 TraesCS3B01G357900 chr2A 94385937 94388626 2689 True 1346.000000 1596 93.975333 2668 5588 3 chr2A.!!$R1 2920
25 TraesCS3B01G357900 chr5D 448352956 448354249 1293 False 1576.000000 1576 88.739000 4590 5902 1 chr5D.!!$F3 1312
26 TraesCS3B01G357900 chr5D 419926904 419927710 806 True 1109.000000 1109 91.822000 1 789 1 chr5D.!!$R3 788
27 TraesCS3B01G357900 chr5D 107314131 107314818 687 True 856.000000 856 89.127000 1 694 1 chr5D.!!$R1 693
28 TraesCS3B01G357900 chr5D 524292261 524292851 590 False 776.000000 776 91.032000 3205 3772 1 chr5D.!!$F4 567
29 TraesCS3B01G357900 chr5D 289582721 289583310 589 True 688.000000 688 88.325000 3205 3772 1 chr5D.!!$R2 567
30 TraesCS3B01G357900 chr6D 380599422 380600177 755 True 1024.000000 1024 91.413000 1 742 1 chr6D.!!$R1 741
31 TraesCS3B01G357900 chr6D 225661348 225662995 1647 True 631.000000 1251 89.197667 3205 4903 3 chr6D.!!$R4 1698
32 TraesCS3B01G357900 chr6D 467815201 467815803 602 True 584.000000 584 84.502000 877 1475 1 chr6D.!!$R3 598
33 TraesCS3B01G357900 chr6D 41523525 41524383 858 False 427.500000 699 88.714500 3422 4224 2 chr6D.!!$F4 802
34 TraesCS3B01G357900 chr4A 493270169 493271007 838 True 1074.000000 1074 90.036000 1 827 1 chr4A.!!$R2 826
35 TraesCS3B01G357900 chr2B 43956500 43957322 822 False 1070.000000 1070 90.545000 1 804 1 chr2B.!!$F1 803
36 TraesCS3B01G357900 chr5A 671853325 671854163 838 False 1068.000000 1068 89.929000 1 827 1 chr5A.!!$F1 826
37 TraesCS3B01G357900 chr7D 7980589 7981342 753 True 1038.000000 1038 91.788000 1 742 1 chr7D.!!$R1 741
38 TraesCS3B01G357900 chr7D 292418768 292421189 2421 False 828.500000 1064 90.349000 924 3721 2 chr7D.!!$F7 2797
39 TraesCS3B01G357900 chr7B 680511215 680511899 684 False 885.000000 885 89.943000 1 694 1 chr7B.!!$F2 693
40 TraesCS3B01G357900 chr5B 385242271 385242957 686 False 815.000000 815 88.126000 1 694 1 chr5B.!!$F1 693
41 TraesCS3B01G357900 chr3D 8353706 8354279 573 True 728.000000 728 89.655000 3205 3779 1 chr3D.!!$R1 574
42 TraesCS3B01G357900 chr3D 34546194 34546787 593 False 702.000000 702 88.721000 3205 3772 1 chr3D.!!$F2 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1024 0.108329 AATGGAGGCGGTAGACAACG 60.108 55.000 0.00 0.00 0.0 4.10 F
1730 2189 1.064166 CAAGGCATGGACCCAAGATCT 60.064 52.381 0.00 0.00 0.0 2.75 F
2233 2813 0.035458 CATTATGGGACGGAGGGAGC 59.965 60.000 0.00 0.00 0.0 4.70 F
2392 2973 1.841663 CTGTGTGTTGGCGCCAGTAC 61.842 60.000 30.75 29.23 0.0 2.73 F
4315 5394 3.064207 CGTAGGTAAAGCTTGCAAGTCA 58.936 45.455 26.55 7.70 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2686 2.023673 CAACAGAGCAACAAGGACCAA 58.976 47.619 0.00 0.0 0.00 3.67 R
3475 4248 3.618351 TCGTGTTTACCTTGGGTCAAAA 58.382 40.909 0.00 0.0 37.09 2.44 R
4158 5157 0.179048 CCCTGCGCTTGGTGATGATA 60.179 55.000 9.73 0.0 0.00 2.15 R
4335 5414 1.081840 GTGTGCGCTTCTTTCCAGC 60.082 57.895 9.73 0.0 0.00 4.85 R
5959 7098 0.030235 TACGCATGCACCGTAGCTAG 59.970 55.000 19.57 0.0 39.88 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 230 4.431809 TCTTTGTCAATGTTGTTTGCCAG 58.568 39.130 0.00 0.00 0.00 4.85
233 239 5.886960 ATGTTGTTTGCCAGTCTAAGATC 57.113 39.130 0.00 0.00 0.00 2.75
418 427 1.067846 GTCCATAGGCATATCACGCGA 60.068 52.381 15.93 0.00 0.00 5.87
454 463 0.936764 CGTCGGATGCTTCTGGATCG 60.937 60.000 8.46 7.59 41.21 3.69
470 479 0.677288 ATCGAACGACAACCCTCACA 59.323 50.000 0.00 0.00 0.00 3.58
516 525 1.382695 TTCCCCGATCCACTCCTCC 60.383 63.158 0.00 0.00 0.00 4.30
629 670 2.606519 CGTCCTCTCCCCCAACCA 60.607 66.667 0.00 0.00 0.00 3.67
806 849 1.000486 CGTCTCTCCCTTCCCCTCA 60.000 63.158 0.00 0.00 0.00 3.86
872 915 2.441901 CTCCGCTCAGGCTCCTCT 60.442 66.667 0.00 0.00 40.77 3.69
974 1024 0.108329 AATGGAGGCGGTAGACAACG 60.108 55.000 0.00 0.00 0.00 4.10
983 1039 1.429463 GGTAGACAACGCCAGTTCTG 58.571 55.000 0.00 0.00 38.79 3.02
1357 1431 2.093869 GGTCGAGCACCACCATACTAAA 60.094 50.000 10.30 0.00 45.98 1.85
1519 1593 5.907945 GCGACTCTGTTTTTAAGTCCTTTTC 59.092 40.000 0.00 0.00 36.84 2.29
1539 1613 7.148069 CCTTTTCCACATTTATAAGACCCTGTC 60.148 40.741 0.00 0.00 0.00 3.51
1730 2189 1.064166 CAAGGCATGGACCCAAGATCT 60.064 52.381 0.00 0.00 0.00 2.75
2002 2582 3.446516 GTGGAACCCAGTATAGAGTTCGT 59.553 47.826 0.00 0.00 39.58 3.85
2233 2813 0.035458 CATTATGGGACGGAGGGAGC 59.965 60.000 0.00 0.00 0.00 4.70
2392 2973 1.841663 CTGTGTGTTGGCGCCAGTAC 61.842 60.000 30.75 29.23 0.00 2.73
2615 3227 3.871006 CGTATTACACACACATGCTCCAT 59.129 43.478 0.00 0.00 0.00 3.41
2817 3464 5.992829 TCCACAATATGTAAACGTGTCAACT 59.007 36.000 0.00 0.00 0.00 3.16
3163 3811 6.855836 TGATTATCTTGGTGAGCATTTGTTC 58.144 36.000 0.00 0.00 0.00 3.18
3188 3836 8.264347 TCAATAACTGGAATACATTGTCTGCTA 58.736 33.333 0.00 0.00 0.00 3.49
3235 4008 6.173339 ACTATTACAAATGTCTGTGAGGGTG 58.827 40.000 0.00 0.00 0.00 4.61
3475 4248 3.839490 CTCTGATTGAGCTCCCCATAGAT 59.161 47.826 12.15 0.00 35.84 1.98
3597 4419 4.397420 ACTGTTTGTGAATGCCTGTGATA 58.603 39.130 0.00 0.00 0.00 2.15
3659 4482 4.341806 TCATTGTCTGGTTGTTCTTGCAAT 59.658 37.500 0.00 0.00 0.00 3.56
4070 5068 6.406177 CCTTGCTATTTATGTTGGCTGACATT 60.406 38.462 11.28 0.00 40.54 2.71
4085 5084 4.083324 GCTGACATTACTTGCTTGTTGCTA 60.083 41.667 0.00 0.00 43.37 3.49
4158 5157 3.630013 TGCTTCTCCAGTGCCGCT 61.630 61.111 0.00 0.00 0.00 5.52
4257 5336 4.109050 CTGTATGCTCGGTTTCTTCTCTC 58.891 47.826 0.00 0.00 0.00 3.20
4315 5394 3.064207 CGTAGGTAAAGCTTGCAAGTCA 58.936 45.455 26.55 7.70 0.00 3.41
4335 5414 1.392589 ATGGCAGTTAGAATTGGCGG 58.607 50.000 6.80 0.00 42.82 6.13
4358 5437 1.337823 GGAAAGAAGCGCACACCTAGA 60.338 52.381 11.47 0.00 0.00 2.43
4408 5490 5.009610 GCATTTTTCTTCTAGTGTGGTCCAA 59.990 40.000 0.00 0.00 0.00 3.53
4428 5516 4.262292 CCAAGCCAGCATGCATACATTTAT 60.262 41.667 21.98 0.00 32.87 1.40
4429 5517 5.047872 CCAAGCCAGCATGCATACATTTATA 60.048 40.000 21.98 0.00 32.87 0.98
4430 5518 5.633830 AGCCAGCATGCATACATTTATAC 57.366 39.130 21.98 0.00 32.87 1.47
4431 5519 5.319453 AGCCAGCATGCATACATTTATACT 58.681 37.500 21.98 0.00 32.87 2.12
4432 5520 5.413833 AGCCAGCATGCATACATTTATACTC 59.586 40.000 21.98 0.00 32.87 2.59
4433 5521 5.392380 GCCAGCATGCATACATTTATACTCC 60.392 44.000 21.98 0.00 32.87 3.85
4434 5522 5.124457 CCAGCATGCATACATTTATACTCCC 59.876 44.000 21.98 0.00 32.87 4.30
4435 5523 5.942236 CAGCATGCATACATTTATACTCCCT 59.058 40.000 21.98 0.00 32.87 4.20
4436 5524 6.093219 CAGCATGCATACATTTATACTCCCTC 59.907 42.308 21.98 0.00 32.87 4.30
4437 5525 5.355350 GCATGCATACATTTATACTCCCTCC 59.645 44.000 14.21 0.00 32.87 4.30
4438 5526 5.147330 TGCATACATTTATACTCCCTCCG 57.853 43.478 0.00 0.00 0.00 4.63
4439 5527 4.591498 TGCATACATTTATACTCCCTCCGT 59.409 41.667 0.00 0.00 0.00 4.69
4440 5528 5.071250 TGCATACATTTATACTCCCTCCGTT 59.929 40.000 0.00 0.00 0.00 4.44
4441 5529 5.995897 GCATACATTTATACTCCCTCCGTTT 59.004 40.000 0.00 0.00 0.00 3.60
4442 5530 6.485648 GCATACATTTATACTCCCTCCGTTTT 59.514 38.462 0.00 0.00 0.00 2.43
4443 5531 7.658575 GCATACATTTATACTCCCTCCGTTTTA 59.341 37.037 0.00 0.00 0.00 1.52
4444 5532 9.550406 CATACATTTATACTCCCTCCGTTTTAA 57.450 33.333 0.00 0.00 0.00 1.52
4451 5539 9.603921 TTATACTCCCTCCGTTTTAAATACTTG 57.396 33.333 0.00 0.00 0.00 3.16
4452 5540 5.872963 ACTCCCTCCGTTTTAAATACTTGT 58.127 37.500 0.00 0.00 0.00 3.16
4453 5541 5.936372 ACTCCCTCCGTTTTAAATACTTGTC 59.064 40.000 0.00 0.00 0.00 3.18
4454 5542 6.117975 TCCCTCCGTTTTAAATACTTGTCT 57.882 37.500 0.00 0.00 0.00 3.41
4455 5543 6.536447 TCCCTCCGTTTTAAATACTTGTCTT 58.464 36.000 0.00 0.00 0.00 3.01
4456 5544 6.999871 TCCCTCCGTTTTAAATACTTGTCTTT 59.000 34.615 0.00 0.00 0.00 2.52
4457 5545 7.173735 TCCCTCCGTTTTAAATACTTGTCTTTC 59.826 37.037 0.00 0.00 0.00 2.62
4458 5546 7.174426 CCCTCCGTTTTAAATACTTGTCTTTCT 59.826 37.037 0.00 0.00 0.00 2.52
4459 5547 9.211485 CCTCCGTTTTAAATACTTGTCTTTCTA 57.789 33.333 0.00 0.00 0.00 2.10
4461 5549 9.211485 TCCGTTTTAAATACTTGTCTTTCTAGG 57.789 33.333 0.00 0.00 0.00 3.02
4462 5550 7.961283 CCGTTTTAAATACTTGTCTTTCTAGGC 59.039 37.037 0.00 0.00 0.00 3.93
4463 5551 8.500773 CGTTTTAAATACTTGTCTTTCTAGGCA 58.499 33.333 0.00 0.00 33.22 4.75
4468 5556 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
4469 5557 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
4470 5558 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
4471 5559 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
4472 5560 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
4473 5561 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
4474 5562 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
4475 5563 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
4476 5564 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
4477 5565 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
4478 5566 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
4479 5567 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
4480 5568 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
4481 5569 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
4482 5570 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
4483 5571 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
4484 5572 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
4485 5573 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
4486 5574 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
4487 5575 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4488 5576 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4489 5577 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4490 5578 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4491 5579 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4492 5580 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4493 5581 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4494 5582 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4495 5583 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4496 5584 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4497 5585 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4498 5586 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4499 5587 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4500 5588 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4501 5589 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4502 5590 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4503 5591 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4504 5592 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4505 5593 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4506 5594 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4507 5595 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4508 5596 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4551 5639 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
4552 5640 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
4553 5641 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
4554 5642 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
4555 5643 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
4556 5644 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
4557 5645 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
4558 5646 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
4582 5670 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4583 5671 7.625828 AGAAAGACAATTATTTAGGAACGGG 57.374 36.000 0.00 0.00 0.00 5.28
4584 5672 6.602009 AGAAAGACAATTATTTAGGAACGGGG 59.398 38.462 0.00 0.00 0.00 5.73
4585 5673 4.788679 AGACAATTATTTAGGAACGGGGG 58.211 43.478 0.00 0.00 0.00 5.40
4643 5731 4.265085 CACATGACAAACAAAAGTCGTTGG 59.735 41.667 0.00 0.00 37.58 3.77
4715 5805 0.729116 AATTGCTGATCAACTCGCCG 59.271 50.000 0.00 0.00 37.53 6.46
4998 6101 5.413969 AGTGACGGTTTTGCTAGTAAAAC 57.586 39.130 30.11 30.11 45.32 2.43
5025 6128 8.833231 ATACCAGCACTTACATTGTATACATC 57.167 34.615 6.36 0.00 0.00 3.06
5027 6130 5.983118 CCAGCACTTACATTGTATACATCGA 59.017 40.000 6.36 0.00 0.00 3.59
5126 6229 1.004440 GCAGGCGACAAGAAGAGGT 60.004 57.895 0.00 0.00 0.00 3.85
5137 6240 3.335484 ACAAGAAGAGGTAGAGGAGGTCT 59.665 47.826 0.00 0.00 39.59 3.85
5221 6324 2.236146 CTGTGCCACCCTTGTGTATCTA 59.764 50.000 0.00 0.00 41.09 1.98
5563 6668 3.850173 AGGCCCATGTAGGTAGAGAAAAA 59.150 43.478 0.00 0.00 34.66 1.94
5613 6737 5.196341 TGTATTAGAGCGTCGAATTGGAT 57.804 39.130 0.00 0.00 0.00 3.41
5681 6819 4.090588 TCGGATCCAACGTGGCCC 62.091 66.667 13.41 0.00 37.47 5.80
5785 6923 5.937540 TCGCAGAGAAGGTCATTAATTTCAA 59.062 36.000 1.54 0.00 0.00 2.69
5833 6972 6.090483 TCTGTTTTTGTCACAAAAAGGTCA 57.910 33.333 25.49 18.95 31.05 4.02
5903 7042 8.454106 GCAAGTTGACATATTTCTTGTAGTGAT 58.546 33.333 7.16 0.00 38.09 3.06
5904 7043 9.764870 CAAGTTGACATATTTCTTGTAGTGATG 57.235 33.333 0.00 0.00 33.27 3.07
5905 7044 7.978982 AGTTGACATATTTCTTGTAGTGATGC 58.021 34.615 0.00 0.00 0.00 3.91
5906 7045 6.588348 TGACATATTTCTTGTAGTGATGCG 57.412 37.500 0.00 0.00 0.00 4.73
5907 7046 6.106003 TGACATATTTCTTGTAGTGATGCGT 58.894 36.000 0.00 0.00 0.00 5.24
5908 7047 7.262048 TGACATATTTCTTGTAGTGATGCGTA 58.738 34.615 0.00 0.00 0.00 4.42
5909 7048 7.762159 TGACATATTTCTTGTAGTGATGCGTAA 59.238 33.333 0.00 0.00 0.00 3.18
5910 7049 8.662781 ACATATTTCTTGTAGTGATGCGTAAT 57.337 30.769 0.00 0.00 0.00 1.89
5911 7050 9.758651 ACATATTTCTTGTAGTGATGCGTAATA 57.241 29.630 0.00 0.00 0.00 0.98
5913 7052 6.897259 TTTCTTGTAGTGATGCGTAATACC 57.103 37.500 0.00 0.00 0.00 2.73
5914 7053 4.940463 TCTTGTAGTGATGCGTAATACCC 58.060 43.478 0.00 0.00 0.00 3.69
5915 7054 4.647853 TCTTGTAGTGATGCGTAATACCCT 59.352 41.667 0.00 0.00 0.00 4.34
5916 7055 5.829391 TCTTGTAGTGATGCGTAATACCCTA 59.171 40.000 0.00 0.00 0.00 3.53
5917 7056 5.700722 TGTAGTGATGCGTAATACCCTAG 57.299 43.478 0.00 0.00 0.00 3.02
5918 7057 5.135383 TGTAGTGATGCGTAATACCCTAGT 58.865 41.667 0.00 0.00 0.00 2.57
5919 7058 4.850347 AGTGATGCGTAATACCCTAGTC 57.150 45.455 0.00 0.00 0.00 2.59
5920 7059 3.573110 AGTGATGCGTAATACCCTAGTCC 59.427 47.826 0.00 0.00 0.00 3.85
5921 7060 3.573110 GTGATGCGTAATACCCTAGTCCT 59.427 47.826 0.00 0.00 0.00 3.85
5922 7061 3.572682 TGATGCGTAATACCCTAGTCCTG 59.427 47.826 0.00 0.00 0.00 3.86
5923 7062 1.684983 TGCGTAATACCCTAGTCCTGC 59.315 52.381 0.00 0.00 0.00 4.85
5924 7063 1.962100 GCGTAATACCCTAGTCCTGCT 59.038 52.381 0.00 0.00 0.00 4.24
5925 7064 2.364647 GCGTAATACCCTAGTCCTGCTT 59.635 50.000 0.00 0.00 0.00 3.91
5926 7065 3.181468 GCGTAATACCCTAGTCCTGCTTT 60.181 47.826 0.00 0.00 0.00 3.51
5927 7066 4.369182 CGTAATACCCTAGTCCTGCTTTG 58.631 47.826 0.00 0.00 0.00 2.77
5928 7067 3.283259 AATACCCTAGTCCTGCTTTGC 57.717 47.619 0.00 0.00 0.00 3.68
5929 7068 1.952621 TACCCTAGTCCTGCTTTGCT 58.047 50.000 0.00 0.00 0.00 3.91
5930 7069 1.952621 ACCCTAGTCCTGCTTTGCTA 58.047 50.000 0.00 0.00 0.00 3.49
5931 7070 2.482494 ACCCTAGTCCTGCTTTGCTAT 58.518 47.619 0.00 0.00 0.00 2.97
5932 7071 3.654273 ACCCTAGTCCTGCTTTGCTATA 58.346 45.455 0.00 0.00 0.00 1.31
5933 7072 4.235372 ACCCTAGTCCTGCTTTGCTATAT 58.765 43.478 0.00 0.00 0.00 0.86
5934 7073 5.403512 ACCCTAGTCCTGCTTTGCTATATA 58.596 41.667 0.00 0.00 0.00 0.86
5935 7074 6.026186 ACCCTAGTCCTGCTTTGCTATATAT 58.974 40.000 0.00 0.00 0.00 0.86
5936 7075 6.502158 ACCCTAGTCCTGCTTTGCTATATATT 59.498 38.462 0.00 0.00 0.00 1.28
5937 7076 7.017651 ACCCTAGTCCTGCTTTGCTATATATTT 59.982 37.037 0.00 0.00 0.00 1.40
5938 7077 7.335422 CCCTAGTCCTGCTTTGCTATATATTTG 59.665 40.741 0.00 0.00 0.00 2.32
5939 7078 8.097038 CCTAGTCCTGCTTTGCTATATATTTGA 58.903 37.037 0.00 0.00 0.00 2.69
5940 7079 7.976135 AGTCCTGCTTTGCTATATATTTGAG 57.024 36.000 0.00 0.00 0.00 3.02
5941 7080 7.512992 AGTCCTGCTTTGCTATATATTTGAGT 58.487 34.615 0.00 0.00 0.00 3.41
5942 7081 7.443575 AGTCCTGCTTTGCTATATATTTGAGTG 59.556 37.037 0.00 0.00 0.00 3.51
5943 7082 7.227512 GTCCTGCTTTGCTATATATTTGAGTGT 59.772 37.037 0.00 0.00 0.00 3.55
5944 7083 7.775093 TCCTGCTTTGCTATATATTTGAGTGTT 59.225 33.333 0.00 0.00 0.00 3.32
5945 7084 8.072567 CCTGCTTTGCTATATATTTGAGTGTTC 58.927 37.037 0.00 0.00 0.00 3.18
5946 7085 8.737168 TGCTTTGCTATATATTTGAGTGTTCT 57.263 30.769 0.00 0.00 0.00 3.01
5947 7086 9.177608 TGCTTTGCTATATATTTGAGTGTTCTT 57.822 29.630 0.00 0.00 0.00 2.52
5948 7087 9.443283 GCTTTGCTATATATTTGAGTGTTCTTG 57.557 33.333 0.00 0.00 0.00 3.02
5951 7090 9.890629 TTGCTATATATTTGAGTGTTCTTGAGT 57.109 29.630 0.00 0.00 0.00 3.41
5952 7091 9.890629 TGCTATATATTTGAGTGTTCTTGAGTT 57.109 29.630 0.00 0.00 0.00 3.01
5957 7096 8.908786 ATATTTGAGTGTTCTTGAGTTCTTGA 57.091 30.769 0.00 0.00 0.00 3.02
5958 7097 7.630242 ATTTGAGTGTTCTTGAGTTCTTGAA 57.370 32.000 0.00 0.00 0.00 2.69
5959 7098 6.422776 TTGAGTGTTCTTGAGTTCTTGAAC 57.577 37.500 5.44 5.44 39.18 3.18
5960 7099 5.734720 TGAGTGTTCTTGAGTTCTTGAACT 58.265 37.500 14.94 14.94 39.38 3.01
5961 7100 6.873997 TGAGTGTTCTTGAGTTCTTGAACTA 58.126 36.000 14.99 1.60 39.38 2.24
5962 7101 6.980978 TGAGTGTTCTTGAGTTCTTGAACTAG 59.019 38.462 14.99 10.50 39.38 2.57
5963 7102 5.755861 AGTGTTCTTGAGTTCTTGAACTAGC 59.244 40.000 14.99 5.79 39.38 3.42
5964 7103 5.755861 GTGTTCTTGAGTTCTTGAACTAGCT 59.244 40.000 14.99 0.00 39.38 3.32
5965 7104 6.924060 GTGTTCTTGAGTTCTTGAACTAGCTA 59.076 38.462 14.99 0.00 39.38 3.32
5966 7105 6.924060 TGTTCTTGAGTTCTTGAACTAGCTAC 59.076 38.462 14.99 11.33 39.38 3.58
5967 7106 5.700846 TCTTGAGTTCTTGAACTAGCTACG 58.299 41.667 14.99 3.27 32.22 3.51
5968 7107 4.436242 TGAGTTCTTGAACTAGCTACGG 57.564 45.455 14.99 0.00 32.22 4.02
5969 7108 3.825014 TGAGTTCTTGAACTAGCTACGGT 59.175 43.478 14.99 0.00 32.22 4.83
5970 7109 4.167268 GAGTTCTTGAACTAGCTACGGTG 58.833 47.826 14.99 0.00 32.22 4.94
5971 7110 2.649331 TCTTGAACTAGCTACGGTGC 57.351 50.000 0.00 0.00 0.00 5.01
5972 7111 1.890489 TCTTGAACTAGCTACGGTGCA 59.110 47.619 4.81 0.00 34.99 4.57
5973 7112 2.496070 TCTTGAACTAGCTACGGTGCAT 59.504 45.455 0.00 0.00 34.99 3.96
5974 7113 2.293677 TGAACTAGCTACGGTGCATG 57.706 50.000 0.00 0.00 34.99 4.06
5975 7114 0.931005 GAACTAGCTACGGTGCATGC 59.069 55.000 11.82 11.82 34.99 4.06
5976 7115 0.806102 AACTAGCTACGGTGCATGCG 60.806 55.000 14.09 0.76 34.99 4.73
5977 7116 1.226974 CTAGCTACGGTGCATGCGT 60.227 57.895 14.09 7.60 34.99 5.24
5978 7117 0.030235 CTAGCTACGGTGCATGCGTA 59.970 55.000 14.09 8.41 34.99 4.42
5979 7118 0.030235 TAGCTACGGTGCATGCGTAG 59.970 55.000 20.58 20.58 38.71 3.51
5980 7119 1.518572 GCTACGGTGCATGCGTAGT 60.519 57.895 23.57 19.41 38.18 2.73
5981 7120 1.480219 GCTACGGTGCATGCGTAGTC 61.480 60.000 23.57 15.88 38.18 2.59
5982 7121 0.870307 CTACGGTGCATGCGTAGTCC 60.870 60.000 14.09 9.10 33.20 3.85
5983 7122 1.596895 TACGGTGCATGCGTAGTCCA 61.597 55.000 14.09 0.00 0.00 4.02
5984 7123 1.739929 CGGTGCATGCGTAGTCCAA 60.740 57.895 14.09 0.00 0.00 3.53
5985 7124 1.295357 CGGTGCATGCGTAGTCCAAA 61.295 55.000 14.09 0.00 0.00 3.28
5986 7125 0.878416 GGTGCATGCGTAGTCCAAAA 59.122 50.000 14.09 0.00 0.00 2.44
5987 7126 1.135689 GGTGCATGCGTAGTCCAAAAG 60.136 52.381 14.09 0.00 0.00 2.27
5988 7127 1.804151 GTGCATGCGTAGTCCAAAAGA 59.196 47.619 14.09 0.00 0.00 2.52
5989 7128 2.420022 GTGCATGCGTAGTCCAAAAGAT 59.580 45.455 14.09 0.00 0.00 2.40
5990 7129 2.677836 TGCATGCGTAGTCCAAAAGATC 59.322 45.455 14.09 0.00 0.00 2.75
5991 7130 2.032178 GCATGCGTAGTCCAAAAGATCC 59.968 50.000 0.00 0.00 0.00 3.36
5992 7131 3.270027 CATGCGTAGTCCAAAAGATCCA 58.730 45.455 0.00 0.00 0.00 3.41
5993 7132 3.410631 TGCGTAGTCCAAAAGATCCAA 57.589 42.857 0.00 0.00 0.00 3.53
5994 7133 3.745799 TGCGTAGTCCAAAAGATCCAAA 58.254 40.909 0.00 0.00 0.00 3.28
5995 7134 4.331968 TGCGTAGTCCAAAAGATCCAAAT 58.668 39.130 0.00 0.00 0.00 2.32
5996 7135 4.394920 TGCGTAGTCCAAAAGATCCAAATC 59.605 41.667 0.00 0.00 0.00 2.17
5997 7136 4.201920 GCGTAGTCCAAAAGATCCAAATCC 60.202 45.833 0.00 0.00 31.78 3.01
5998 7137 5.186198 CGTAGTCCAAAAGATCCAAATCCT 58.814 41.667 0.00 0.00 31.78 3.24
5999 7138 5.648092 CGTAGTCCAAAAGATCCAAATCCTT 59.352 40.000 0.00 0.00 31.78 3.36
6000 7139 6.183360 CGTAGTCCAAAAGATCCAAATCCTTC 60.183 42.308 0.00 0.00 31.78 3.46
6001 7140 5.896963 AGTCCAAAAGATCCAAATCCTTCT 58.103 37.500 0.00 0.00 31.78 2.85
6002 7141 6.318112 AGTCCAAAAGATCCAAATCCTTCTT 58.682 36.000 0.00 0.00 31.78 2.52
6003 7142 6.435591 AGTCCAAAAGATCCAAATCCTTCTTC 59.564 38.462 0.00 0.00 31.78 2.87
6004 7143 6.435591 GTCCAAAAGATCCAAATCCTTCTTCT 59.564 38.462 0.00 0.00 31.78 2.85
6005 7144 6.435277 TCCAAAAGATCCAAATCCTTCTTCTG 59.565 38.462 0.00 0.00 31.78 3.02
6006 7145 6.210185 CCAAAAGATCCAAATCCTTCTTCTGT 59.790 38.462 0.00 0.00 31.78 3.41
6007 7146 7.394359 CCAAAAGATCCAAATCCTTCTTCTGTA 59.606 37.037 0.00 0.00 31.78 2.74
6008 7147 7.929941 AAAGATCCAAATCCTTCTTCTGTAC 57.070 36.000 0.00 0.00 31.78 2.90
6009 7148 5.665459 AGATCCAAATCCTTCTTCTGTACG 58.335 41.667 0.00 0.00 31.78 3.67
6010 7149 3.596214 TCCAAATCCTTCTTCTGTACGC 58.404 45.455 0.00 0.00 0.00 4.42
6011 7150 2.678336 CCAAATCCTTCTTCTGTACGCC 59.322 50.000 0.00 0.00 0.00 5.68
6012 7151 3.600388 CAAATCCTTCTTCTGTACGCCT 58.400 45.455 0.00 0.00 0.00 5.52
6013 7152 3.983044 AATCCTTCTTCTGTACGCCTT 57.017 42.857 0.00 0.00 0.00 4.35
6014 7153 2.743636 TCCTTCTTCTGTACGCCTTG 57.256 50.000 0.00 0.00 0.00 3.61
6015 7154 1.275291 TCCTTCTTCTGTACGCCTTGG 59.725 52.381 0.00 0.00 0.00 3.61
6016 7155 1.676014 CCTTCTTCTGTACGCCTTGGG 60.676 57.143 0.00 0.00 0.00 4.12
6017 7156 0.321298 TTCTTCTGTACGCCTTGGGC 60.321 55.000 0.00 0.00 46.75 5.36
6026 7165 3.741325 GCCTTGGGCCTCCTTCTA 58.259 61.111 4.53 0.00 44.06 2.10
6027 7166 2.235570 GCCTTGGGCCTCCTTCTAT 58.764 57.895 4.53 0.00 44.06 1.98
6028 7167 1.435256 GCCTTGGGCCTCCTTCTATA 58.565 55.000 4.53 0.00 44.06 1.31
6029 7168 1.349357 GCCTTGGGCCTCCTTCTATAG 59.651 57.143 4.53 0.00 44.06 1.31
6030 7169 1.981495 CCTTGGGCCTCCTTCTATAGG 59.019 57.143 4.53 0.00 46.27 2.57
6038 7177 4.092116 CCTCCTTCTATAGGCAAAAGGG 57.908 50.000 14.77 8.05 44.37 3.95
6039 7178 3.181439 CCTCCTTCTATAGGCAAAAGGGG 60.181 52.174 14.77 12.39 44.37 4.79
6040 7179 3.459969 CTCCTTCTATAGGCAAAAGGGGT 59.540 47.826 14.77 0.00 44.37 4.95
6041 7180 3.458487 TCCTTCTATAGGCAAAAGGGGTC 59.542 47.826 14.77 0.00 44.37 4.46
6042 7181 3.467803 CTTCTATAGGCAAAAGGGGTCG 58.532 50.000 0.00 0.00 0.00 4.79
6043 7182 1.140252 TCTATAGGCAAAAGGGGTCGC 59.860 52.381 0.00 0.00 0.00 5.19
6044 7183 0.181824 TATAGGCAAAAGGGGTCGCC 59.818 55.000 0.00 0.00 45.23 5.54
6046 7185 3.680786 GGCAAAAGGGGTCGCCAC 61.681 66.667 8.89 0.00 44.25 5.01
6047 7186 2.909965 GCAAAAGGGGTCGCCACA 60.910 61.111 8.89 0.00 0.00 4.17
6048 7187 2.919494 GCAAAAGGGGTCGCCACAG 61.919 63.158 8.89 0.00 0.00 3.66
6049 7188 1.528309 CAAAAGGGGTCGCCACAGT 60.528 57.895 8.89 0.00 0.00 3.55
6050 7189 1.528309 AAAAGGGGTCGCCACAGTG 60.528 57.895 8.89 0.00 0.00 3.66
6051 7190 1.990160 AAAAGGGGTCGCCACAGTGA 61.990 55.000 8.89 0.00 0.00 3.41
6052 7191 1.779061 AAAGGGGTCGCCACAGTGAT 61.779 55.000 8.89 0.00 34.38 3.06
6053 7192 0.907704 AAGGGGTCGCCACAGTGATA 60.908 55.000 8.89 0.00 34.38 2.15
6054 7193 1.153429 GGGGTCGCCACAGTGATAC 60.153 63.158 0.62 0.00 34.38 2.24
6055 7194 1.594833 GGGTCGCCACAGTGATACA 59.405 57.895 0.62 0.00 34.38 2.29
6056 7195 0.036765 GGGTCGCCACAGTGATACAA 60.037 55.000 0.62 0.00 34.38 2.41
6057 7196 1.609580 GGGTCGCCACAGTGATACAAA 60.610 52.381 0.62 0.00 34.38 2.83
6058 7197 1.732259 GGTCGCCACAGTGATACAAAG 59.268 52.381 0.62 0.00 34.38 2.77
6059 7198 1.732259 GTCGCCACAGTGATACAAAGG 59.268 52.381 0.62 0.00 34.38 3.11
6060 7199 1.621317 TCGCCACAGTGATACAAAGGA 59.379 47.619 0.62 0.00 0.00 3.36
6061 7200 2.002586 CGCCACAGTGATACAAAGGAG 58.997 52.381 0.62 0.00 0.00 3.69
6062 7201 2.359900 GCCACAGTGATACAAAGGAGG 58.640 52.381 0.62 0.00 0.00 4.30
6063 7202 2.290323 GCCACAGTGATACAAAGGAGGT 60.290 50.000 0.62 0.00 0.00 3.85
6064 7203 3.338249 CCACAGTGATACAAAGGAGGTG 58.662 50.000 0.62 0.00 0.00 4.00
6065 7204 3.338249 CACAGTGATACAAAGGAGGTGG 58.662 50.000 0.00 0.00 0.00 4.61
6066 7205 2.305927 ACAGTGATACAAAGGAGGTGGG 59.694 50.000 0.00 0.00 0.00 4.61
6067 7206 2.571653 CAGTGATACAAAGGAGGTGGGA 59.428 50.000 0.00 0.00 0.00 4.37
6068 7207 3.009033 CAGTGATACAAAGGAGGTGGGAA 59.991 47.826 0.00 0.00 0.00 3.97
6069 7208 3.264450 AGTGATACAAAGGAGGTGGGAAG 59.736 47.826 0.00 0.00 0.00 3.46
6070 7209 3.009143 GTGATACAAAGGAGGTGGGAAGT 59.991 47.826 0.00 0.00 0.00 3.01
6071 7210 3.655777 TGATACAAAGGAGGTGGGAAGTT 59.344 43.478 0.00 0.00 0.00 2.66
6072 7211 2.364972 ACAAAGGAGGTGGGAAGTTG 57.635 50.000 0.00 0.00 0.00 3.16
6073 7212 1.569072 ACAAAGGAGGTGGGAAGTTGT 59.431 47.619 0.00 0.00 0.00 3.32
6074 7213 2.781174 ACAAAGGAGGTGGGAAGTTGTA 59.219 45.455 0.00 0.00 0.00 2.41
6075 7214 3.146847 CAAAGGAGGTGGGAAGTTGTAC 58.853 50.000 0.00 0.00 0.00 2.90
6076 7215 2.112279 AGGAGGTGGGAAGTTGTACA 57.888 50.000 0.00 0.00 0.00 2.90
6077 7216 1.978580 AGGAGGTGGGAAGTTGTACAG 59.021 52.381 0.00 0.00 0.00 2.74
6078 7217 1.697982 GGAGGTGGGAAGTTGTACAGT 59.302 52.381 0.00 0.00 0.00 3.55
6079 7218 2.550208 GGAGGTGGGAAGTTGTACAGTG 60.550 54.545 0.00 0.00 0.00 3.66
6080 7219 2.104281 GAGGTGGGAAGTTGTACAGTGT 59.896 50.000 0.00 0.00 0.00 3.55
6081 7220 3.311091 AGGTGGGAAGTTGTACAGTGTA 58.689 45.455 0.00 0.00 0.00 2.90
6082 7221 3.070590 AGGTGGGAAGTTGTACAGTGTAC 59.929 47.826 23.85 23.85 0.00 2.90
6083 7222 3.181463 GGTGGGAAGTTGTACAGTGTACA 60.181 47.826 28.24 28.24 0.00 2.90
6084 7223 4.444536 GTGGGAAGTTGTACAGTGTACAA 58.555 43.478 34.48 34.48 35.33 2.41
6085 7224 4.510340 GTGGGAAGTTGTACAGTGTACAAG 59.490 45.833 37.25 0.00 38.01 3.16
6086 7225 3.497262 GGGAAGTTGTACAGTGTACAAGC 59.503 47.826 37.25 30.50 38.01 4.01
6087 7226 4.377897 GGAAGTTGTACAGTGTACAAGCT 58.622 43.478 37.25 31.68 38.01 3.74
6088 7227 4.814771 GGAAGTTGTACAGTGTACAAGCTT 59.185 41.667 37.25 35.47 38.01 3.74
6089 7228 5.987347 GGAAGTTGTACAGTGTACAAGCTTA 59.013 40.000 37.25 20.99 38.01 3.09
6090 7229 6.649557 GGAAGTTGTACAGTGTACAAGCTTAT 59.350 38.462 37.25 24.76 38.01 1.73
6091 7230 7.148623 GGAAGTTGTACAGTGTACAAGCTTATC 60.149 40.741 37.25 29.00 38.01 1.75
6092 7231 5.862323 AGTTGTACAGTGTACAAGCTTATCG 59.138 40.000 37.25 0.00 38.01 2.92
6093 7232 4.171005 TGTACAGTGTACAAGCTTATCGC 58.829 43.478 29.44 3.27 39.57 4.58
6094 7233 2.618053 ACAGTGTACAAGCTTATCGCC 58.382 47.619 0.00 0.00 40.39 5.54
6095 7234 2.233922 ACAGTGTACAAGCTTATCGCCT 59.766 45.455 0.00 0.00 40.39 5.52
6096 7235 2.604914 CAGTGTACAAGCTTATCGCCTG 59.395 50.000 0.00 0.00 40.39 4.85
6097 7236 2.233922 AGTGTACAAGCTTATCGCCTGT 59.766 45.455 0.00 0.00 45.01 4.00
6098 7237 2.603560 GTGTACAAGCTTATCGCCTGTC 59.396 50.000 0.00 0.00 42.16 3.51
6099 7238 2.232696 TGTACAAGCTTATCGCCTGTCA 59.767 45.455 0.00 0.00 42.16 3.58
6100 7239 2.698855 ACAAGCTTATCGCCTGTCAT 57.301 45.000 0.00 0.00 38.97 3.06
6101 7240 2.991250 ACAAGCTTATCGCCTGTCATT 58.009 42.857 0.00 0.00 38.97 2.57
6102 7241 4.137116 ACAAGCTTATCGCCTGTCATTA 57.863 40.909 0.00 0.00 38.97 1.90
6103 7242 3.871594 ACAAGCTTATCGCCTGTCATTAC 59.128 43.478 0.00 0.00 38.97 1.89
6104 7243 2.743938 AGCTTATCGCCTGTCATTACG 58.256 47.619 0.00 0.00 40.39 3.18
6105 7244 1.792949 GCTTATCGCCTGTCATTACGG 59.207 52.381 0.00 0.00 0.00 4.02
6114 7253 3.925688 CTGTCATTACGGGACAAATCG 57.074 47.619 0.00 0.00 44.04 3.34
6115 7254 2.004017 TGTCATTACGGGACAAATCGC 58.996 47.619 0.00 0.00 41.96 4.58
6116 7255 2.004017 GTCATTACGGGACAAATCGCA 58.996 47.619 0.00 0.00 37.65 5.10
6117 7256 2.612212 GTCATTACGGGACAAATCGCAT 59.388 45.455 0.00 0.00 37.65 4.73
6118 7257 3.064820 GTCATTACGGGACAAATCGCATT 59.935 43.478 0.00 0.00 37.65 3.56
6119 7258 4.271533 GTCATTACGGGACAAATCGCATTA 59.728 41.667 0.00 0.00 37.65 1.90
6120 7259 4.876679 TCATTACGGGACAAATCGCATTAA 59.123 37.500 0.00 0.00 37.65 1.40
6121 7260 5.354513 TCATTACGGGACAAATCGCATTAAA 59.645 36.000 0.00 0.00 37.65 1.52
6122 7261 5.821516 TTACGGGACAAATCGCATTAAAT 57.178 34.783 0.00 0.00 37.65 1.40
6123 7262 4.027572 ACGGGACAAATCGCATTAAATG 57.972 40.909 0.00 0.00 37.65 2.32
6139 7278 6.593978 CATTAAATGCGCTACTTAGATGTCC 58.406 40.000 9.73 0.00 0.00 4.02
6140 7279 4.408182 AAATGCGCTACTTAGATGTCCT 57.592 40.909 9.73 0.00 0.00 3.85
6141 7280 3.651803 ATGCGCTACTTAGATGTCCTC 57.348 47.619 9.73 0.00 0.00 3.71
6142 7281 2.656002 TGCGCTACTTAGATGTCCTCT 58.344 47.619 9.73 0.00 38.06 3.69
6143 7282 3.024547 TGCGCTACTTAGATGTCCTCTT 58.975 45.455 9.73 0.00 35.28 2.85
6144 7283 4.204799 TGCGCTACTTAGATGTCCTCTTA 58.795 43.478 9.73 0.00 35.28 2.10
6145 7284 4.036498 TGCGCTACTTAGATGTCCTCTTAC 59.964 45.833 9.73 0.00 35.28 2.34
6146 7285 4.276431 GCGCTACTTAGATGTCCTCTTACT 59.724 45.833 0.00 0.00 35.28 2.24
6147 7286 5.221087 GCGCTACTTAGATGTCCTCTTACTT 60.221 44.000 0.00 0.00 35.28 2.24
6148 7287 6.680872 GCGCTACTTAGATGTCCTCTTACTTT 60.681 42.308 0.00 0.00 35.28 2.66
6149 7288 7.468357 GCGCTACTTAGATGTCCTCTTACTTTA 60.468 40.741 0.00 0.00 35.28 1.85
6150 7289 8.569641 CGCTACTTAGATGTCCTCTTACTTTAT 58.430 37.037 0.00 0.00 35.28 1.40
6151 7290 9.902196 GCTACTTAGATGTCCTCTTACTTTATC 57.098 37.037 0.00 0.00 35.28 1.75
6153 7292 7.942990 ACTTAGATGTCCTCTTACTTTATCGG 58.057 38.462 0.00 0.00 35.28 4.18
6154 7293 5.793030 AGATGTCCTCTTACTTTATCGGG 57.207 43.478 0.00 0.00 0.00 5.14
6155 7294 5.455872 AGATGTCCTCTTACTTTATCGGGA 58.544 41.667 0.00 0.00 0.00 5.14
6156 7295 6.078664 AGATGTCCTCTTACTTTATCGGGAT 58.921 40.000 0.00 0.00 0.00 3.85
6157 7296 5.531122 TGTCCTCTTACTTTATCGGGATG 57.469 43.478 0.00 0.00 0.00 3.51
6158 7297 4.344102 TGTCCTCTTACTTTATCGGGATGG 59.656 45.833 0.00 0.00 0.00 3.51
6159 7298 4.344390 GTCCTCTTACTTTATCGGGATGGT 59.656 45.833 0.00 0.00 0.00 3.55
6160 7299 5.537674 GTCCTCTTACTTTATCGGGATGGTA 59.462 44.000 0.00 0.00 0.00 3.25
6161 7300 6.041296 GTCCTCTTACTTTATCGGGATGGTAA 59.959 42.308 0.00 0.00 0.00 2.85
6162 7301 6.041296 TCCTCTTACTTTATCGGGATGGTAAC 59.959 42.308 0.00 0.00 0.00 2.50
6163 7302 5.835257 TCTTACTTTATCGGGATGGTAACG 58.165 41.667 0.00 0.00 42.51 3.18
6164 7303 5.593909 TCTTACTTTATCGGGATGGTAACGA 59.406 40.000 0.00 0.00 41.20 3.85
6165 7304 4.317671 ACTTTATCGGGATGGTAACGAG 57.682 45.455 0.00 0.00 40.21 4.18
6166 7305 3.069158 ACTTTATCGGGATGGTAACGAGG 59.931 47.826 0.00 0.00 40.21 4.63
6167 7306 0.963962 TATCGGGATGGTAACGAGGC 59.036 55.000 0.00 0.00 40.21 4.70
6168 7307 1.755393 ATCGGGATGGTAACGAGGCC 61.755 60.000 0.00 0.00 40.21 5.19
6169 7308 2.509422 GGGATGGTAACGAGGCCC 59.491 66.667 0.00 0.00 42.51 5.80
6170 7309 2.108362 GGATGGTAACGAGGCCCG 59.892 66.667 11.48 11.48 45.44 6.13
6192 7331 3.255379 GTCCATCGCCGCTTCGTC 61.255 66.667 0.00 0.00 0.00 4.20
6193 7332 3.449227 TCCATCGCCGCTTCGTCT 61.449 61.111 0.00 0.00 0.00 4.18
6194 7333 2.956964 CCATCGCCGCTTCGTCTC 60.957 66.667 0.00 0.00 0.00 3.36
6195 7334 3.315521 CATCGCCGCTTCGTCTCG 61.316 66.667 0.00 0.00 0.00 4.04
6201 7340 4.161976 CGCTTCGTCTCGCTCCGA 62.162 66.667 0.00 0.00 0.00 4.55
6202 7341 2.577378 GCTTCGTCTCGCTCCGAC 60.577 66.667 0.00 0.00 31.95 4.79
6203 7342 2.868196 CTTCGTCTCGCTCCGACA 59.132 61.111 0.00 0.00 31.95 4.35
6204 7343 1.512310 CTTCGTCTCGCTCCGACAC 60.512 63.158 0.00 0.00 31.95 3.67
6205 7344 3.304764 TTCGTCTCGCTCCGACACG 62.305 63.158 8.70 8.70 46.14 4.49
6213 7352 4.778415 CTCCGACACGCGTCCAGG 62.778 72.222 9.86 13.19 39.11 4.45
6216 7355 4.337060 CGACACGCGTCCAGGTCA 62.337 66.667 22.30 0.00 39.11 4.02
6217 7356 2.028484 GACACGCGTCCAGGTCAA 59.972 61.111 19.09 0.00 36.02 3.18
6218 7357 1.374252 GACACGCGTCCAGGTCAAT 60.374 57.895 19.09 0.00 36.02 2.57
6219 7358 1.626654 GACACGCGTCCAGGTCAATG 61.627 60.000 19.09 3.81 36.02 2.82
6220 7359 1.374125 CACGCGTCCAGGTCAATGA 60.374 57.895 9.86 0.00 0.00 2.57
6221 7360 1.079819 ACGCGTCCAGGTCAATGAG 60.080 57.895 5.58 0.00 0.00 2.90
6222 7361 1.811266 CGCGTCCAGGTCAATGAGG 60.811 63.158 0.00 0.00 0.00 3.86
6223 7362 2.109126 GCGTCCAGGTCAATGAGGC 61.109 63.158 0.00 0.00 33.47 4.70
6224 7363 1.296392 CGTCCAGGTCAATGAGGCA 59.704 57.895 0.00 0.00 0.00 4.75
6225 7364 0.107508 CGTCCAGGTCAATGAGGCAT 60.108 55.000 0.00 0.00 0.00 4.40
6226 7365 1.386533 GTCCAGGTCAATGAGGCATG 58.613 55.000 0.00 0.00 32.41 4.06
6227 7366 0.394762 TCCAGGTCAATGAGGCATGC 60.395 55.000 9.90 9.90 30.95 4.06
6228 7367 0.681887 CCAGGTCAATGAGGCATGCA 60.682 55.000 21.36 0.00 30.95 3.96
6229 7368 0.738975 CAGGTCAATGAGGCATGCAG 59.261 55.000 21.36 1.65 0.00 4.41
6230 7369 0.330604 AGGTCAATGAGGCATGCAGT 59.669 50.000 21.36 5.64 0.00 4.40
6231 7370 0.454600 GGTCAATGAGGCATGCAGTG 59.545 55.000 21.36 8.87 33.05 3.66
6249 7388 3.518003 CCATGTAGGCTTGCTGGC 58.482 61.111 0.00 0.00 42.15 4.85
6256 7395 3.441290 GGCTTGCTGGCTGCTGAG 61.441 66.667 17.45 14.96 43.37 3.35
6257 7396 4.117661 GCTTGCTGGCTGCTGAGC 62.118 66.667 21.67 21.67 45.40 4.26
6258 7397 2.360100 CTTGCTGGCTGCTGAGCT 60.360 61.111 17.45 0.00 45.44 4.09
6259 7398 2.671963 TTGCTGGCTGCTGAGCTG 60.672 61.111 17.45 6.46 45.44 4.24
6260 7399 4.717313 TGCTGGCTGCTGAGCTGG 62.717 66.667 17.45 3.69 45.44 4.85
6279 7418 4.329545 GTGGCGGCAGGGTCTTCA 62.330 66.667 13.91 0.00 0.00 3.02
6280 7419 4.329545 TGGCGGCAGGGTCTTCAC 62.330 66.667 7.97 0.00 0.00 3.18
6281 7420 4.329545 GGCGGCAGGGTCTTCACA 62.330 66.667 3.07 0.00 0.00 3.58
6282 7421 2.281484 GCGGCAGGGTCTTCACAA 60.281 61.111 0.00 0.00 0.00 3.33
6283 7422 1.896660 GCGGCAGGGTCTTCACAAA 60.897 57.895 0.00 0.00 0.00 2.83
6284 7423 1.856265 GCGGCAGGGTCTTCACAAAG 61.856 60.000 0.00 0.00 0.00 2.77
6285 7424 0.250295 CGGCAGGGTCTTCACAAAGA 60.250 55.000 0.00 0.00 39.22 2.52
6286 7425 1.611673 CGGCAGGGTCTTCACAAAGAT 60.612 52.381 0.00 0.00 43.26 2.40
6287 7426 2.087646 GGCAGGGTCTTCACAAAGATC 58.912 52.381 0.00 0.00 43.26 2.75
6288 7427 2.290577 GGCAGGGTCTTCACAAAGATCT 60.291 50.000 0.00 0.00 43.26 2.75
6289 7428 2.746362 GCAGGGTCTTCACAAAGATCTG 59.254 50.000 0.00 12.82 43.26 2.90
6290 7429 2.746362 CAGGGTCTTCACAAAGATCTGC 59.254 50.000 0.00 0.00 43.26 4.26
6291 7430 2.373169 AGGGTCTTCACAAAGATCTGCA 59.627 45.455 0.00 0.00 43.26 4.41
6292 7431 3.009916 AGGGTCTTCACAAAGATCTGCAT 59.990 43.478 0.00 0.00 43.26 3.96
6293 7432 3.128242 GGGTCTTCACAAAGATCTGCATG 59.872 47.826 0.00 0.00 43.26 4.06
6294 7433 3.427233 GGTCTTCACAAAGATCTGCATGC 60.427 47.826 11.82 11.82 43.26 4.06
6295 7434 2.751259 TCTTCACAAAGATCTGCATGCC 59.249 45.455 16.68 0.00 36.59 4.40
6296 7435 2.203470 TCACAAAGATCTGCATGCCA 57.797 45.000 16.68 1.32 0.00 4.92
6297 7436 1.814394 TCACAAAGATCTGCATGCCAC 59.186 47.619 16.68 3.85 0.00 5.01
6298 7437 1.135199 CACAAAGATCTGCATGCCACC 60.135 52.381 16.68 1.66 0.00 4.61
6299 7438 1.179152 CAAAGATCTGCATGCCACCA 58.821 50.000 16.68 0.00 0.00 4.17
6300 7439 1.135199 CAAAGATCTGCATGCCACCAC 60.135 52.381 16.68 3.10 0.00 4.16
6301 7440 0.038599 AAGATCTGCATGCCACCACA 59.961 50.000 16.68 0.00 0.00 4.17
6302 7441 0.679002 AGATCTGCATGCCACCACAC 60.679 55.000 16.68 0.35 0.00 3.82
6303 7442 0.961857 GATCTGCATGCCACCACACA 60.962 55.000 16.68 0.00 0.00 3.72
6304 7443 0.963856 ATCTGCATGCCACCACACAG 60.964 55.000 16.68 2.89 0.00 3.66
6305 7444 2.598099 TGCATGCCACCACACAGG 60.598 61.111 16.68 0.00 45.67 4.00
6314 7453 4.885426 CCACACAGGTGCTTGACT 57.115 55.556 0.00 0.00 43.88 3.41
6316 7455 1.800805 CCACACAGGTGCTTGACTAG 58.199 55.000 0.00 0.00 43.88 2.57
6317 7456 1.070758 CCACACAGGTGCTTGACTAGT 59.929 52.381 0.00 0.00 43.88 2.57
6318 7457 2.485479 CCACACAGGTGCTTGACTAGTT 60.485 50.000 0.00 0.00 43.88 2.24
6319 7458 2.802816 CACACAGGTGCTTGACTAGTTC 59.197 50.000 0.00 0.00 38.37 3.01
6320 7459 2.061773 CACAGGTGCTTGACTAGTTCG 58.938 52.381 0.00 0.00 0.00 3.95
6321 7460 1.687123 ACAGGTGCTTGACTAGTTCGT 59.313 47.619 0.00 0.00 0.00 3.85
6322 7461 2.102588 ACAGGTGCTTGACTAGTTCGTT 59.897 45.455 0.00 0.00 0.00 3.85
6323 7462 3.131396 CAGGTGCTTGACTAGTTCGTTT 58.869 45.455 0.00 0.00 0.00 3.60
6324 7463 4.202182 ACAGGTGCTTGACTAGTTCGTTTA 60.202 41.667 0.00 0.00 0.00 2.01
6325 7464 4.386049 CAGGTGCTTGACTAGTTCGTTTAG 59.614 45.833 0.00 0.00 0.00 1.85
6326 7465 4.038883 AGGTGCTTGACTAGTTCGTTTAGT 59.961 41.667 0.00 0.00 34.19 2.24
6327 7466 5.242393 AGGTGCTTGACTAGTTCGTTTAGTA 59.758 40.000 0.00 0.00 31.74 1.82
6328 7467 5.344396 GGTGCTTGACTAGTTCGTTTAGTAC 59.656 44.000 0.00 0.00 31.74 2.73
6329 7468 5.344396 GTGCTTGACTAGTTCGTTTAGTACC 59.656 44.000 0.00 0.00 31.74 3.34
6330 7469 4.861462 GCTTGACTAGTTCGTTTAGTACCC 59.139 45.833 0.00 0.00 31.74 3.69
6331 7470 5.565439 GCTTGACTAGTTCGTTTAGTACCCA 60.565 44.000 0.00 0.00 31.74 4.51
6332 7471 5.376854 TGACTAGTTCGTTTAGTACCCAC 57.623 43.478 0.00 0.00 31.74 4.61
6333 7472 4.083324 TGACTAGTTCGTTTAGTACCCACG 60.083 45.833 0.00 3.32 31.74 4.94
6334 7473 3.821033 ACTAGTTCGTTTAGTACCCACGT 59.179 43.478 8.45 0.00 35.40 4.49
6335 7474 5.001232 ACTAGTTCGTTTAGTACCCACGTA 58.999 41.667 8.45 0.00 35.40 3.57
6336 7475 4.160736 AGTTCGTTTAGTACCCACGTAC 57.839 45.455 9.45 9.45 44.51 3.67
6343 7482 3.059603 GTACCCACGTACTGCCATG 57.940 57.895 0.00 0.00 41.50 3.66
6344 7483 0.248289 GTACCCACGTACTGCCATGT 59.752 55.000 0.00 0.00 41.50 3.21
6345 7484 0.248012 TACCCACGTACTGCCATGTG 59.752 55.000 0.00 0.00 35.58 3.21
6346 7485 3.889227 CCACGTACTGCCATGTGG 58.111 61.111 6.96 6.96 46.36 4.17
6347 7486 3.889227 CACGTACTGCCATGTGGG 58.111 61.111 0.54 0.00 40.85 4.61
6348 7487 1.003839 CACGTACTGCCATGTGGGT 60.004 57.895 0.54 0.00 39.65 4.51
6349 7488 0.248012 CACGTACTGCCATGTGGGTA 59.752 55.000 0.54 0.00 39.65 3.69
6350 7489 0.248289 ACGTACTGCCATGTGGGTAC 59.752 55.000 0.54 5.11 39.65 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 208 4.462508 TGGCAAACAACATTGACAAAGA 57.537 36.364 0.00 0.00 45.10 2.52
418 427 1.745087 GACGGTGGTTGATGCATGATT 59.255 47.619 2.46 0.00 0.00 2.57
454 463 0.883370 GGGTGTGAGGGTTGTCGTTC 60.883 60.000 0.00 0.00 0.00 3.95
470 479 2.122954 GGGTGAGAGGGTGAGGGT 59.877 66.667 0.00 0.00 0.00 4.34
789 832 0.041982 AGTGAGGGGAAGGGAGAGAC 59.958 60.000 0.00 0.00 0.00 3.36
872 915 2.299013 CACTAGCCCGCTTATATGGTCA 59.701 50.000 0.00 0.00 0.00 4.02
974 1024 3.730761 CGCCTGCACAGAACTGGC 61.731 66.667 6.76 0.91 45.69 4.85
994 1050 2.012673 GTCTGAAGCAGCCATCGAATT 58.987 47.619 0.00 0.00 0.00 2.17
1155 1223 3.866582 CGAGGGATCTGGCCACCC 61.867 72.222 20.16 20.16 43.55 4.61
1228 1296 1.443802 GCTCCTGCTGAAACCTGTAC 58.556 55.000 0.00 0.00 36.03 2.90
1254 1322 0.251916 CAGGCATTTACCTCCGTGGA 59.748 55.000 0.00 0.00 38.26 4.02
1357 1431 7.565680 AGGAAATCATGGATACGAAGTTAGTT 58.434 34.615 0.00 0.00 37.78 2.24
1721 2180 7.052873 AGAGAATTGTGATGTTAGATCTTGGG 58.947 38.462 0.00 0.00 0.00 4.12
2002 2582 7.117236 CAGGTTTCAACTAGTTAAATCAGCGTA 59.883 37.037 8.04 0.00 0.00 4.42
2106 2686 2.023673 CAACAGAGCAACAAGGACCAA 58.976 47.619 0.00 0.00 0.00 3.67
2335 2916 3.244582 TGGTAGCTAGAAACTGACCCAA 58.755 45.455 0.00 0.00 0.00 4.12
2615 3227 4.592942 AGAGAATGCAGTTGGATTTGCTA 58.407 39.130 0.36 0.00 40.87 3.49
2817 3464 9.461312 AACAGTAAGGATCAGTGCAATATTAAA 57.539 29.630 0.00 0.00 0.00 1.52
3064 3712 3.750922 GCAGGAACCTCCCTACTTTTGTT 60.751 47.826 0.00 0.00 37.19 2.83
3163 3811 7.325660 AGCAGACAATGTATTCCAGTTATTG 57.674 36.000 0.00 0.00 35.47 1.90
3188 3836 5.161943 ACGCAAAGGTAAATAGAGTTCCT 57.838 39.130 0.00 0.00 0.00 3.36
3475 4248 3.618351 TCGTGTTTACCTTGGGTCAAAA 58.382 40.909 0.00 0.00 37.09 2.44
3659 4482 7.578189 GCACCTACACAACCTAACTAATAGTGA 60.578 40.741 0.00 0.00 0.00 3.41
3841 4665 5.414454 TCAATAACAATAACCCAGACACAGC 59.586 40.000 0.00 0.00 0.00 4.40
3969 4796 8.190784 ACATAAATAGCAAGTTATTGTCCAAGC 58.809 33.333 0.00 0.00 38.76 4.01
4001 4837 4.199310 TGAGCAGCAACAAACTAGAACTT 58.801 39.130 0.00 0.00 0.00 2.66
4158 5157 0.179048 CCCTGCGCTTGGTGATGATA 60.179 55.000 9.73 0.00 0.00 2.15
4257 5336 2.432972 GCATGCGCACCAAAAGGG 60.433 61.111 14.90 0.00 44.81 3.95
4315 5394 1.750778 CCGCCAATTCTAACTGCCATT 59.249 47.619 0.00 0.00 0.00 3.16
4335 5414 1.081840 GTGTGCGCTTCTTTCCAGC 60.082 57.895 9.73 0.00 0.00 4.85
4358 5437 4.262549 GCAGAGACCAGCAGATAGATCAAT 60.263 45.833 0.00 0.00 0.00 2.57
4408 5490 5.319453 AGTATAAATGTATGCATGCTGGCT 58.681 37.500 20.33 3.63 35.15 4.75
4428 5516 7.008021 ACAAGTATTTAAAACGGAGGGAGTA 57.992 36.000 0.00 0.00 0.00 2.59
4429 5517 5.872963 ACAAGTATTTAAAACGGAGGGAGT 58.127 37.500 0.00 0.00 0.00 3.85
4430 5518 6.171213 AGACAAGTATTTAAAACGGAGGGAG 58.829 40.000 0.00 0.00 0.00 4.30
4431 5519 6.117975 AGACAAGTATTTAAAACGGAGGGA 57.882 37.500 0.00 0.00 0.00 4.20
4432 5520 6.812879 AAGACAAGTATTTAAAACGGAGGG 57.187 37.500 0.00 0.00 0.00 4.30
4433 5521 8.095937 AGAAAGACAAGTATTTAAAACGGAGG 57.904 34.615 0.00 0.00 0.00 4.30
4435 5523 9.211485 CCTAGAAAGACAAGTATTTAAAACGGA 57.789 33.333 0.00 0.00 0.00 4.69
4436 5524 7.961283 GCCTAGAAAGACAAGTATTTAAAACGG 59.039 37.037 0.00 0.00 0.00 4.44
4437 5525 8.500773 TGCCTAGAAAGACAAGTATTTAAAACG 58.499 33.333 0.00 0.00 0.00 3.60
4442 5530 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
4443 5531 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
4444 5532 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
4445 5533 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
4446 5534 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
4447 5535 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
4448 5536 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
4449 5537 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
4450 5538 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
4451 5539 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
4452 5540 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
4453 5541 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
4454 5542 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
4455 5543 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
4456 5544 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
4457 5545 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
4458 5546 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
4459 5547 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
4460 5548 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
4461 5549 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
4462 5550 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
4463 5551 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4464 5552 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4465 5553 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4466 5554 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4467 5555 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4468 5556 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4469 5557 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4470 5558 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4471 5559 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4472 5560 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4473 5561 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4474 5562 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4475 5563 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4476 5564 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4477 5565 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4478 5566 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4479 5567 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4480 5568 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4481 5569 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4482 5570 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4483 5571 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4484 5572 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4485 5573 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4486 5574 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4525 5613 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
4526 5614 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
4528 5616 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
4529 5617 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
4530 5618 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
4531 5619 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
4532 5620 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
4556 5644 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
4557 5645 8.827677 CCCGTTCCTAAATAATTGTCTTTCTAG 58.172 37.037 0.00 0.00 0.00 2.43
4558 5646 7.771826 CCCCGTTCCTAAATAATTGTCTTTCTA 59.228 37.037 0.00 0.00 0.00 2.10
4559 5647 6.602009 CCCCGTTCCTAAATAATTGTCTTTCT 59.398 38.462 0.00 0.00 0.00 2.52
4560 5648 6.183360 CCCCCGTTCCTAAATAATTGTCTTTC 60.183 42.308 0.00 0.00 0.00 2.62
4561 5649 5.655090 CCCCCGTTCCTAAATAATTGTCTTT 59.345 40.000 0.00 0.00 0.00 2.52
4562 5650 5.198207 CCCCCGTTCCTAAATAATTGTCTT 58.802 41.667 0.00 0.00 0.00 3.01
4563 5651 4.788679 CCCCCGTTCCTAAATAATTGTCT 58.211 43.478 0.00 0.00 0.00 3.41
4582 5670 3.889538 GCATTTCCAGTAAATACTCCCCC 59.110 47.826 0.00 0.00 35.54 5.40
4583 5671 4.532834 TGCATTTCCAGTAAATACTCCCC 58.467 43.478 0.00 0.00 35.54 4.81
4584 5672 5.507985 GCATGCATTTCCAGTAAATACTCCC 60.508 44.000 14.21 0.00 35.54 4.30
4585 5673 5.067674 TGCATGCATTTCCAGTAAATACTCC 59.932 40.000 18.46 0.00 35.54 3.85
4586 5674 6.135290 TGCATGCATTTCCAGTAAATACTC 57.865 37.500 18.46 0.00 35.54 2.59
4587 5675 6.720112 ATGCATGCATTTCCAGTAAATACT 57.280 33.333 27.46 0.00 35.54 2.12
4643 5731 3.367910 GCTATGTCCTATCCTAGCAGCAC 60.368 52.174 0.00 0.00 37.21 4.40
4725 5815 6.821031 AGCTATACATAGGTGTACTAGCAC 57.179 41.667 19.71 0.00 43.21 4.40
4744 5834 4.501433 ACTCCTACCTAGGTAGCTAGCTA 58.499 47.826 34.91 26.60 44.80 3.32
4745 5835 3.329277 ACTCCTACCTAGGTAGCTAGCT 58.671 50.000 34.91 27.23 44.80 3.32
4746 5836 3.793819 ACTCCTACCTAGGTAGCTAGC 57.206 52.381 34.91 15.19 44.80 3.42
4747 5837 4.835678 GCTACTCCTACCTAGGTAGCTAG 58.164 52.174 34.91 32.10 44.80 3.42
4981 6084 7.599630 TGGTATAGTTTTACTAGCAAAACCG 57.400 36.000 22.25 0.00 45.43 4.44
4998 6101 9.929180 ATGTATACAATGTAAGTGCTGGTATAG 57.071 33.333 10.14 0.00 33.50 1.31
5025 6128 2.995466 ATCACAAATGTTGGCACTCG 57.005 45.000 0.00 0.00 34.12 4.18
5027 6130 2.622942 ACGAATCACAAATGTTGGCACT 59.377 40.909 0.00 0.00 34.12 4.40
5126 6229 4.150359 AGAAACGTTCAAGACCTCCTCTA 58.850 43.478 0.00 0.00 0.00 2.43
5137 6240 2.404923 TGTGTGGGAGAAACGTTCAA 57.595 45.000 0.00 0.00 0.00 2.69
5221 6324 7.872483 GTCCAACTTCCACATACAATCAAAAAT 59.128 33.333 0.00 0.00 0.00 1.82
5412 6517 0.034756 AATTTGGGCCGCAACCTTTC 59.965 50.000 6.19 0.00 0.00 2.62
5588 6694 4.317139 CCAATTCGACGCTCTAATACAACG 60.317 45.833 0.00 0.00 0.00 4.10
5590 6696 5.001237 TCCAATTCGACGCTCTAATACAA 57.999 39.130 0.00 0.00 0.00 2.41
5613 6737 5.128827 AGGTCGTTAATAAGATTCAGCCTGA 59.871 40.000 0.00 0.00 0.00 3.86
5681 6819 3.212682 TCGCTAGCTCTCTGCCCG 61.213 66.667 13.93 0.00 44.23 6.13
5785 6923 1.818674 CAAAAGCTGGCGGTCCTAAAT 59.181 47.619 0.00 0.00 0.00 1.40
5790 6928 2.626780 GGTCAAAAGCTGGCGGTCC 61.627 63.158 0.00 0.00 0.00 4.46
5833 6972 7.823799 ACTGAAAGGTCATTGTTTTTCATTTGT 59.176 29.630 10.82 6.04 38.45 2.83
5876 7015 7.443879 TCACTACAAGAAATATGTCAACTTGCA 59.556 33.333 0.00 0.00 40.72 4.08
5903 7042 1.684983 GCAGGACTAGGGTATTACGCA 59.315 52.381 12.75 0.00 32.95 5.24
5904 7043 1.962100 AGCAGGACTAGGGTATTACGC 59.038 52.381 2.80 2.80 0.00 4.42
5905 7044 4.369182 CAAAGCAGGACTAGGGTATTACG 58.631 47.826 0.00 0.00 0.00 3.18
5906 7045 4.127907 GCAAAGCAGGACTAGGGTATTAC 58.872 47.826 0.00 0.00 0.00 1.89
5907 7046 4.037927 AGCAAAGCAGGACTAGGGTATTA 58.962 43.478 0.00 0.00 0.00 0.98
5908 7047 2.846827 AGCAAAGCAGGACTAGGGTATT 59.153 45.455 0.00 0.00 0.00 1.89
5909 7048 2.482494 AGCAAAGCAGGACTAGGGTAT 58.518 47.619 0.00 0.00 0.00 2.73
5910 7049 1.952621 AGCAAAGCAGGACTAGGGTA 58.047 50.000 0.00 0.00 0.00 3.69
5911 7050 1.952621 TAGCAAAGCAGGACTAGGGT 58.047 50.000 0.00 0.00 0.00 4.34
5912 7051 4.899352 ATATAGCAAAGCAGGACTAGGG 57.101 45.455 0.00 0.00 0.00 3.53
5913 7052 8.097038 TCAAATATATAGCAAAGCAGGACTAGG 58.903 37.037 0.00 0.00 0.00 3.02
5914 7053 9.149225 CTCAAATATATAGCAAAGCAGGACTAG 57.851 37.037 0.00 0.00 0.00 2.57
5915 7054 8.651389 ACTCAAATATATAGCAAAGCAGGACTA 58.349 33.333 0.00 0.00 0.00 2.59
5916 7055 7.443575 CACTCAAATATATAGCAAAGCAGGACT 59.556 37.037 0.00 0.00 0.00 3.85
5917 7056 7.227512 ACACTCAAATATATAGCAAAGCAGGAC 59.772 37.037 0.00 0.00 0.00 3.85
5918 7057 7.282585 ACACTCAAATATATAGCAAAGCAGGA 58.717 34.615 0.00 0.00 0.00 3.86
5919 7058 7.502120 ACACTCAAATATATAGCAAAGCAGG 57.498 36.000 0.00 0.00 0.00 4.85
5920 7059 8.834465 AGAACACTCAAATATATAGCAAAGCAG 58.166 33.333 0.00 0.00 0.00 4.24
5921 7060 8.737168 AGAACACTCAAATATATAGCAAAGCA 57.263 30.769 0.00 0.00 0.00 3.91
5922 7061 9.443283 CAAGAACACTCAAATATATAGCAAAGC 57.557 33.333 0.00 0.00 0.00 3.51
5925 7064 9.890629 ACTCAAGAACACTCAAATATATAGCAA 57.109 29.630 0.00 0.00 0.00 3.91
5926 7065 9.890629 AACTCAAGAACACTCAAATATATAGCA 57.109 29.630 0.00 0.00 0.00 3.49
5931 7070 9.996554 TCAAGAACTCAAGAACACTCAAATATA 57.003 29.630 0.00 0.00 0.00 0.86
5932 7071 8.908786 TCAAGAACTCAAGAACACTCAAATAT 57.091 30.769 0.00 0.00 0.00 1.28
5933 7072 8.612619 GTTCAAGAACTCAAGAACACTCAAATA 58.387 33.333 5.72 0.00 39.95 1.40
5934 7073 7.475840 GTTCAAGAACTCAAGAACACTCAAAT 58.524 34.615 5.72 0.00 39.95 2.32
5935 7074 6.842163 GTTCAAGAACTCAAGAACACTCAAA 58.158 36.000 5.72 0.00 39.95 2.69
5936 7075 6.422776 GTTCAAGAACTCAAGAACACTCAA 57.577 37.500 5.72 0.00 39.95 3.02
5950 7089 2.666994 GCACCGTAGCTAGTTCAAGAAC 59.333 50.000 4.82 4.82 41.45 3.01
5951 7090 2.297880 TGCACCGTAGCTAGTTCAAGAA 59.702 45.455 0.00 0.00 34.99 2.52
5952 7091 1.890489 TGCACCGTAGCTAGTTCAAGA 59.110 47.619 0.00 0.00 34.99 3.02
5953 7092 2.363788 TGCACCGTAGCTAGTTCAAG 57.636 50.000 0.00 0.00 34.99 3.02
5954 7093 2.616960 CATGCACCGTAGCTAGTTCAA 58.383 47.619 0.00 0.00 34.99 2.69
5955 7094 1.739035 GCATGCACCGTAGCTAGTTCA 60.739 52.381 14.21 0.00 34.99 3.18
5956 7095 0.931005 GCATGCACCGTAGCTAGTTC 59.069 55.000 14.21 0.00 34.99 3.01
5957 7096 0.806102 CGCATGCACCGTAGCTAGTT 60.806 55.000 19.57 0.00 34.99 2.24
5958 7097 1.226974 CGCATGCACCGTAGCTAGT 60.227 57.895 19.57 0.00 34.99 2.57
5959 7098 0.030235 TACGCATGCACCGTAGCTAG 59.970 55.000 19.57 0.00 39.88 3.42
5960 7099 2.108568 TACGCATGCACCGTAGCTA 58.891 52.632 19.57 0.00 39.88 3.32
5961 7100 2.889617 TACGCATGCACCGTAGCT 59.110 55.556 19.57 0.00 39.88 3.32
5964 7103 1.140161 GGACTACGCATGCACCGTA 59.860 57.895 19.57 17.29 39.88 4.02
5965 7104 2.125673 GGACTACGCATGCACCGT 60.126 61.111 19.57 16.92 42.26 4.83
5966 7105 1.295357 TTTGGACTACGCATGCACCG 61.295 55.000 19.57 7.03 0.00 4.94
5967 7106 0.878416 TTTTGGACTACGCATGCACC 59.122 50.000 19.57 12.38 0.00 5.01
5968 7107 1.804151 TCTTTTGGACTACGCATGCAC 59.196 47.619 19.57 3.04 0.00 4.57
5969 7108 2.177394 TCTTTTGGACTACGCATGCA 57.823 45.000 19.57 0.00 0.00 3.96
5970 7109 2.032178 GGATCTTTTGGACTACGCATGC 59.968 50.000 7.91 7.91 0.00 4.06
5971 7110 3.270027 TGGATCTTTTGGACTACGCATG 58.730 45.455 0.00 0.00 0.00 4.06
5972 7111 3.627395 TGGATCTTTTGGACTACGCAT 57.373 42.857 0.00 0.00 0.00 4.73
5973 7112 3.410631 TTGGATCTTTTGGACTACGCA 57.589 42.857 0.00 0.00 0.00 5.24
5974 7113 4.201920 GGATTTGGATCTTTTGGACTACGC 60.202 45.833 0.00 0.00 32.66 4.42
5975 7114 5.186198 AGGATTTGGATCTTTTGGACTACG 58.814 41.667 0.00 0.00 32.66 3.51
5976 7115 6.887002 AGAAGGATTTGGATCTTTTGGACTAC 59.113 38.462 0.00 0.00 32.35 2.73
5977 7116 7.032598 AGAAGGATTTGGATCTTTTGGACTA 57.967 36.000 0.00 0.00 32.35 2.59
5978 7117 5.896963 AGAAGGATTTGGATCTTTTGGACT 58.103 37.500 0.00 0.00 32.35 3.85
5979 7118 6.435591 AGAAGAAGGATTTGGATCTTTTGGAC 59.564 38.462 0.00 0.00 32.35 4.02
5980 7119 6.435277 CAGAAGAAGGATTTGGATCTTTTGGA 59.565 38.462 0.00 0.00 32.35 3.53
5981 7120 6.210185 ACAGAAGAAGGATTTGGATCTTTTGG 59.790 38.462 8.96 0.00 37.96 3.28
5982 7121 7.224522 ACAGAAGAAGGATTTGGATCTTTTG 57.775 36.000 0.00 0.00 38.95 2.44
5983 7122 7.119846 CGTACAGAAGAAGGATTTGGATCTTTT 59.880 37.037 0.00 0.00 32.35 2.27
5984 7123 6.595716 CGTACAGAAGAAGGATTTGGATCTTT 59.404 38.462 0.00 0.00 34.62 2.52
5985 7124 6.109359 CGTACAGAAGAAGGATTTGGATCTT 58.891 40.000 0.00 0.00 34.96 2.40
5986 7125 5.665459 CGTACAGAAGAAGGATTTGGATCT 58.335 41.667 0.00 0.00 32.66 2.75
5987 7126 4.271291 GCGTACAGAAGAAGGATTTGGATC 59.729 45.833 0.00 0.00 0.00 3.36
5988 7127 4.192317 GCGTACAGAAGAAGGATTTGGAT 58.808 43.478 0.00 0.00 0.00 3.41
5989 7128 3.596214 GCGTACAGAAGAAGGATTTGGA 58.404 45.455 0.00 0.00 0.00 3.53
5990 7129 2.678336 GGCGTACAGAAGAAGGATTTGG 59.322 50.000 0.00 0.00 0.00 3.28
5991 7130 3.600388 AGGCGTACAGAAGAAGGATTTG 58.400 45.455 0.00 0.00 0.00 2.32
5992 7131 3.983044 AGGCGTACAGAAGAAGGATTT 57.017 42.857 0.00 0.00 0.00 2.17
5993 7132 3.600388 CAAGGCGTACAGAAGAAGGATT 58.400 45.455 0.00 0.00 0.00 3.01
5994 7133 2.093447 CCAAGGCGTACAGAAGAAGGAT 60.093 50.000 0.00 0.00 0.00 3.24
5995 7134 1.275291 CCAAGGCGTACAGAAGAAGGA 59.725 52.381 0.00 0.00 0.00 3.36
5996 7135 1.676014 CCCAAGGCGTACAGAAGAAGG 60.676 57.143 0.00 0.00 0.00 3.46
5997 7136 1.726853 CCCAAGGCGTACAGAAGAAG 58.273 55.000 0.00 0.00 0.00 2.85
5998 7137 0.321298 GCCCAAGGCGTACAGAAGAA 60.321 55.000 0.00 0.00 39.62 2.52
5999 7138 1.295423 GCCCAAGGCGTACAGAAGA 59.705 57.895 0.00 0.00 39.62 2.87
6000 7139 3.890674 GCCCAAGGCGTACAGAAG 58.109 61.111 0.00 0.00 39.62 2.85
6021 7160 3.467803 CGACCCCTTTTGCCTATAGAAG 58.532 50.000 0.00 0.00 0.00 2.85
6022 7161 2.420967 GCGACCCCTTTTGCCTATAGAA 60.421 50.000 0.00 0.00 0.00 2.10
6023 7162 1.140252 GCGACCCCTTTTGCCTATAGA 59.860 52.381 0.00 0.00 0.00 1.98
6024 7163 1.594331 GCGACCCCTTTTGCCTATAG 58.406 55.000 0.00 0.00 0.00 1.31
6025 7164 0.181824 GGCGACCCCTTTTGCCTATA 59.818 55.000 0.00 0.00 42.29 1.31
6026 7165 1.076995 GGCGACCCCTTTTGCCTAT 60.077 57.895 0.00 0.00 42.29 2.57
6027 7166 2.353573 GGCGACCCCTTTTGCCTA 59.646 61.111 0.00 0.00 42.29 3.93
6028 7167 3.897122 TGGCGACCCCTTTTGCCT 61.897 61.111 3.54 0.00 45.46 4.75
6029 7168 3.680786 GTGGCGACCCCTTTTGCC 61.681 66.667 0.00 0.00 45.46 4.52
6030 7169 2.909965 TGTGGCGACCCCTTTTGC 60.910 61.111 0.00 0.00 0.00 3.68
6031 7170 1.528309 ACTGTGGCGACCCCTTTTG 60.528 57.895 0.00 0.00 0.00 2.44
6032 7171 1.528309 CACTGTGGCGACCCCTTTT 60.528 57.895 0.00 0.00 0.00 2.27
6033 7172 1.779061 ATCACTGTGGCGACCCCTTT 61.779 55.000 8.11 0.00 0.00 3.11
6034 7173 0.907704 TATCACTGTGGCGACCCCTT 60.908 55.000 8.11 0.00 0.00 3.95
6035 7174 1.305802 TATCACTGTGGCGACCCCT 60.306 57.895 8.11 0.00 0.00 4.79
6036 7175 1.153429 GTATCACTGTGGCGACCCC 60.153 63.158 8.11 0.00 0.00 4.95
6037 7176 0.036765 TTGTATCACTGTGGCGACCC 60.037 55.000 8.11 0.00 0.00 4.46
6038 7177 1.732259 CTTTGTATCACTGTGGCGACC 59.268 52.381 8.11 0.00 0.00 4.79
6039 7178 1.732259 CCTTTGTATCACTGTGGCGAC 59.268 52.381 8.11 4.54 0.00 5.19
6040 7179 1.621317 TCCTTTGTATCACTGTGGCGA 59.379 47.619 8.11 0.00 0.00 5.54
6041 7180 2.002586 CTCCTTTGTATCACTGTGGCG 58.997 52.381 8.11 0.00 0.00 5.69
6042 7181 2.290323 ACCTCCTTTGTATCACTGTGGC 60.290 50.000 8.11 0.00 0.00 5.01
6043 7182 3.338249 CACCTCCTTTGTATCACTGTGG 58.662 50.000 8.11 0.00 0.00 4.17
6044 7183 3.338249 CCACCTCCTTTGTATCACTGTG 58.662 50.000 0.17 0.17 0.00 3.66
6045 7184 2.305927 CCCACCTCCTTTGTATCACTGT 59.694 50.000 0.00 0.00 0.00 3.55
6046 7185 2.571653 TCCCACCTCCTTTGTATCACTG 59.428 50.000 0.00 0.00 0.00 3.66
6047 7186 2.915869 TCCCACCTCCTTTGTATCACT 58.084 47.619 0.00 0.00 0.00 3.41
6048 7187 3.009143 ACTTCCCACCTCCTTTGTATCAC 59.991 47.826 0.00 0.00 0.00 3.06
6049 7188 3.256704 ACTTCCCACCTCCTTTGTATCA 58.743 45.455 0.00 0.00 0.00 2.15
6050 7189 4.010349 CAACTTCCCACCTCCTTTGTATC 58.990 47.826 0.00 0.00 0.00 2.24
6051 7190 3.397955 ACAACTTCCCACCTCCTTTGTAT 59.602 43.478 0.00 0.00 0.00 2.29
6052 7191 2.781174 ACAACTTCCCACCTCCTTTGTA 59.219 45.455 0.00 0.00 0.00 2.41
6053 7192 1.569072 ACAACTTCCCACCTCCTTTGT 59.431 47.619 0.00 0.00 0.00 2.83
6054 7193 2.364972 ACAACTTCCCACCTCCTTTG 57.635 50.000 0.00 0.00 0.00 2.77
6055 7194 2.781174 TGTACAACTTCCCACCTCCTTT 59.219 45.455 0.00 0.00 0.00 3.11
6056 7195 2.372172 CTGTACAACTTCCCACCTCCTT 59.628 50.000 0.00 0.00 0.00 3.36
6057 7196 1.978580 CTGTACAACTTCCCACCTCCT 59.021 52.381 0.00 0.00 0.00 3.69
6058 7197 1.697982 ACTGTACAACTTCCCACCTCC 59.302 52.381 0.00 0.00 0.00 4.30
6059 7198 2.104281 ACACTGTACAACTTCCCACCTC 59.896 50.000 0.00 0.00 0.00 3.85
6060 7199 2.124411 ACACTGTACAACTTCCCACCT 58.876 47.619 0.00 0.00 0.00 4.00
6061 7200 2.632987 ACACTGTACAACTTCCCACC 57.367 50.000 0.00 0.00 0.00 4.61
6062 7201 4.062677 TGTACACTGTACAACTTCCCAC 57.937 45.455 17.96 0.00 0.00 4.61
6063 7202 4.699637 CTTGTACACTGTACAACTTCCCA 58.300 43.478 24.76 8.53 34.21 4.37
6064 7203 3.497262 GCTTGTACACTGTACAACTTCCC 59.503 47.826 24.76 11.21 34.21 3.97
6065 7204 4.377897 AGCTTGTACACTGTACAACTTCC 58.622 43.478 24.76 15.40 34.21 3.46
6066 7205 5.986004 AAGCTTGTACACTGTACAACTTC 57.014 39.130 24.76 17.68 34.21 3.01
6067 7206 6.365247 CGATAAGCTTGTACACTGTACAACTT 59.635 38.462 28.90 28.90 35.34 2.66
6068 7207 5.862323 CGATAAGCTTGTACACTGTACAACT 59.138 40.000 24.76 22.15 34.21 3.16
6069 7208 5.444218 GCGATAAGCTTGTACACTGTACAAC 60.444 44.000 24.76 20.80 44.04 3.32
6070 7209 4.624024 GCGATAAGCTTGTACACTGTACAA 59.376 41.667 26.10 26.10 44.04 2.41
6071 7210 4.171005 GCGATAAGCTTGTACACTGTACA 58.829 43.478 16.61 16.61 44.04 2.90
6072 7211 4.756868 GCGATAAGCTTGTACACTGTAC 57.243 45.455 9.86 11.82 44.04 2.90
6073 7212 4.676986 CAGGCGATAAGCTTGTACACTGTA 60.677 45.833 9.86 0.00 46.43 2.74
6074 7213 3.923053 CAGGCGATAAGCTTGTACACTGT 60.923 47.826 9.86 0.00 46.43 3.55
6075 7214 2.604914 CAGGCGATAAGCTTGTACACTG 59.395 50.000 9.86 8.41 46.43 3.66
6076 7215 2.893637 CAGGCGATAAGCTTGTACACT 58.106 47.619 9.86 0.00 46.43 3.55
6086 7225 2.035449 TCCCGTAATGACAGGCGATAAG 59.965 50.000 0.00 0.00 0.00 1.73
6087 7226 2.033372 TCCCGTAATGACAGGCGATAA 58.967 47.619 0.00 0.00 0.00 1.75
6088 7227 1.338973 GTCCCGTAATGACAGGCGATA 59.661 52.381 0.00 0.00 32.91 2.92
6089 7228 0.104304 GTCCCGTAATGACAGGCGAT 59.896 55.000 0.00 0.00 32.91 4.58
6090 7229 1.252215 TGTCCCGTAATGACAGGCGA 61.252 55.000 0.00 0.00 37.80 5.54
6091 7230 0.390603 TTGTCCCGTAATGACAGGCG 60.391 55.000 0.00 0.00 43.14 5.52
6092 7231 1.816074 TTTGTCCCGTAATGACAGGC 58.184 50.000 0.00 0.00 43.14 4.85
6093 7232 2.607635 CGATTTGTCCCGTAATGACAGG 59.392 50.000 0.00 0.00 43.14 4.00
6094 7233 2.030457 GCGATTTGTCCCGTAATGACAG 59.970 50.000 0.00 0.00 43.14 3.51
6095 7234 2.004017 GCGATTTGTCCCGTAATGACA 58.996 47.619 0.00 0.00 40.80 3.58
6096 7235 2.004017 TGCGATTTGTCCCGTAATGAC 58.996 47.619 0.00 0.00 0.00 3.06
6097 7236 2.388310 TGCGATTTGTCCCGTAATGA 57.612 45.000 0.00 0.00 0.00 2.57
6098 7237 3.691049 AATGCGATTTGTCCCGTAATG 57.309 42.857 0.00 0.00 0.00 1.90
6099 7238 5.821516 TTTAATGCGATTTGTCCCGTAAT 57.178 34.783 0.00 0.00 0.00 1.89
6100 7239 5.574082 CATTTAATGCGATTTGTCCCGTAA 58.426 37.500 0.00 0.00 0.00 3.18
6101 7240 5.163302 CATTTAATGCGATTTGTCCCGTA 57.837 39.130 0.00 0.00 0.00 4.02
6102 7241 4.027572 CATTTAATGCGATTTGTCCCGT 57.972 40.909 0.00 0.00 0.00 5.28
6115 7254 6.425114 AGGACATCTAAGTAGCGCATTTAATG 59.575 38.462 11.47 10.57 0.00 1.90
6116 7255 6.525629 AGGACATCTAAGTAGCGCATTTAAT 58.474 36.000 11.47 0.00 0.00 1.40
6117 7256 5.914033 AGGACATCTAAGTAGCGCATTTAA 58.086 37.500 11.47 0.00 0.00 1.52
6118 7257 5.302059 AGAGGACATCTAAGTAGCGCATTTA 59.698 40.000 11.47 4.08 36.10 1.40
6119 7258 4.100189 AGAGGACATCTAAGTAGCGCATTT 59.900 41.667 11.47 2.92 36.10 2.32
6120 7259 3.639094 AGAGGACATCTAAGTAGCGCATT 59.361 43.478 11.47 3.68 36.10 3.56
6121 7260 3.226777 AGAGGACATCTAAGTAGCGCAT 58.773 45.455 11.47 0.00 36.10 4.73
6122 7261 2.656002 AGAGGACATCTAAGTAGCGCA 58.344 47.619 11.47 0.00 36.10 6.09
6123 7262 3.719173 AAGAGGACATCTAAGTAGCGC 57.281 47.619 0.00 0.00 37.23 5.92
6124 7263 6.380095 AAGTAAGAGGACATCTAAGTAGCG 57.620 41.667 0.00 0.00 37.23 4.26
6125 7264 9.902196 GATAAAGTAAGAGGACATCTAAGTAGC 57.098 37.037 0.00 0.00 37.23 3.58
6127 7266 9.064706 CCGATAAAGTAAGAGGACATCTAAGTA 57.935 37.037 0.00 0.00 37.23 2.24
6128 7267 7.014422 CCCGATAAAGTAAGAGGACATCTAAGT 59.986 40.741 0.00 0.00 37.23 2.24
6129 7268 7.230913 TCCCGATAAAGTAAGAGGACATCTAAG 59.769 40.741 0.00 0.00 37.23 2.18
6130 7269 7.064866 TCCCGATAAAGTAAGAGGACATCTAA 58.935 38.462 0.00 0.00 37.23 2.10
6131 7270 6.607970 TCCCGATAAAGTAAGAGGACATCTA 58.392 40.000 0.00 0.00 37.23 1.98
6132 7271 5.455872 TCCCGATAAAGTAAGAGGACATCT 58.544 41.667 0.00 0.00 41.27 2.90
6133 7272 5.786264 TCCCGATAAAGTAAGAGGACATC 57.214 43.478 0.00 0.00 0.00 3.06
6134 7273 5.012148 CCATCCCGATAAAGTAAGAGGACAT 59.988 44.000 0.00 0.00 0.00 3.06
6135 7274 4.344102 CCATCCCGATAAAGTAAGAGGACA 59.656 45.833 0.00 0.00 0.00 4.02
6136 7275 4.344390 ACCATCCCGATAAAGTAAGAGGAC 59.656 45.833 0.00 0.00 0.00 3.85
6137 7276 4.553678 ACCATCCCGATAAAGTAAGAGGA 58.446 43.478 0.00 0.00 0.00 3.71
6138 7277 4.957684 ACCATCCCGATAAAGTAAGAGG 57.042 45.455 0.00 0.00 0.00 3.69
6139 7278 5.919141 CGTTACCATCCCGATAAAGTAAGAG 59.081 44.000 0.00 0.00 0.00 2.85
6140 7279 5.593909 TCGTTACCATCCCGATAAAGTAAGA 59.406 40.000 0.00 0.00 0.00 2.10
6141 7280 5.835257 TCGTTACCATCCCGATAAAGTAAG 58.165 41.667 0.00 0.00 0.00 2.34
6142 7281 5.221303 CCTCGTTACCATCCCGATAAAGTAA 60.221 44.000 0.00 0.00 0.00 2.24
6143 7282 4.279169 CCTCGTTACCATCCCGATAAAGTA 59.721 45.833 0.00 0.00 0.00 2.24
6144 7283 3.069158 CCTCGTTACCATCCCGATAAAGT 59.931 47.826 0.00 0.00 0.00 2.66
6145 7284 3.650139 CCTCGTTACCATCCCGATAAAG 58.350 50.000 0.00 0.00 0.00 1.85
6146 7285 2.224113 GCCTCGTTACCATCCCGATAAA 60.224 50.000 0.00 0.00 0.00 1.40
6147 7286 1.342174 GCCTCGTTACCATCCCGATAA 59.658 52.381 0.00 0.00 0.00 1.75
6148 7287 0.963962 GCCTCGTTACCATCCCGATA 59.036 55.000 0.00 0.00 0.00 2.92
6149 7288 1.746517 GCCTCGTTACCATCCCGAT 59.253 57.895 0.00 0.00 0.00 4.18
6150 7289 2.428925 GGCCTCGTTACCATCCCGA 61.429 63.158 0.00 0.00 0.00 5.14
6151 7290 2.108362 GGCCTCGTTACCATCCCG 59.892 66.667 0.00 0.00 0.00 5.14
6152 7291 2.509422 GGGCCTCGTTACCATCCC 59.491 66.667 0.84 0.00 0.00 3.85
6153 7292 2.108362 CGGGCCTCGTTACCATCC 59.892 66.667 0.84 0.00 0.00 3.51
6175 7314 3.255379 GACGAAGCGGCGATGGAC 61.255 66.667 12.98 0.00 34.83 4.02
6176 7315 3.411418 GAGACGAAGCGGCGATGGA 62.411 63.158 12.98 0.00 41.28 3.41
6177 7316 2.956964 GAGACGAAGCGGCGATGG 60.957 66.667 12.98 2.27 41.28 3.51
6178 7317 3.315521 CGAGACGAAGCGGCGATG 61.316 66.667 12.98 0.00 41.28 3.84
6184 7323 4.161976 TCGGAGCGAGACGAAGCG 62.162 66.667 0.00 0.00 36.01 4.68
6185 7324 2.577378 GTCGGAGCGAGACGAAGC 60.577 66.667 0.00 0.00 41.17 3.86
6186 7325 1.512310 GTGTCGGAGCGAGACGAAG 60.512 63.158 0.00 0.00 40.02 3.79
6187 7326 2.559840 GTGTCGGAGCGAGACGAA 59.440 61.111 0.00 0.00 40.02 3.85
6196 7335 4.778415 CCTGGACGCGTGTCGGAG 62.778 72.222 20.70 18.63 46.49 4.63
6199 7338 3.834447 TTGACCTGGACGCGTGTCG 62.834 63.158 20.70 11.49 46.49 4.35
6200 7339 1.374252 ATTGACCTGGACGCGTGTC 60.374 57.895 20.70 20.76 44.72 3.67
6201 7340 1.667830 CATTGACCTGGACGCGTGT 60.668 57.895 20.70 8.43 0.00 4.49
6202 7341 1.354337 CTCATTGACCTGGACGCGTG 61.354 60.000 20.70 4.12 0.00 5.34
6203 7342 1.079819 CTCATTGACCTGGACGCGT 60.080 57.895 13.85 13.85 0.00 6.01
6204 7343 1.811266 CCTCATTGACCTGGACGCG 60.811 63.158 3.53 3.53 0.00 6.01
6205 7344 2.109126 GCCTCATTGACCTGGACGC 61.109 63.158 0.00 0.00 0.00 5.19
6206 7345 0.107508 ATGCCTCATTGACCTGGACG 60.108 55.000 0.00 0.00 0.00 4.79
6207 7346 1.386533 CATGCCTCATTGACCTGGAC 58.613 55.000 0.00 0.00 0.00 4.02
6208 7347 0.394762 GCATGCCTCATTGACCTGGA 60.395 55.000 6.36 0.00 0.00 3.86
6209 7348 0.681887 TGCATGCCTCATTGACCTGG 60.682 55.000 16.68 0.00 0.00 4.45
6210 7349 0.738975 CTGCATGCCTCATTGACCTG 59.261 55.000 16.68 0.00 0.00 4.00
6211 7350 0.330604 ACTGCATGCCTCATTGACCT 59.669 50.000 16.68 0.00 0.00 3.85
6212 7351 0.454600 CACTGCATGCCTCATTGACC 59.545 55.000 16.68 0.00 0.00 4.02
6232 7371 1.077212 AGCCAGCAAGCCTACATGG 60.077 57.895 0.00 0.00 39.35 3.66
6233 7372 2.001361 GCAGCCAGCAAGCCTACATG 62.001 60.000 0.00 0.00 44.79 3.21
6234 7373 1.751927 GCAGCCAGCAAGCCTACAT 60.752 57.895 0.00 0.00 44.79 2.29
6235 7374 2.360350 GCAGCCAGCAAGCCTACA 60.360 61.111 0.00 0.00 44.79 2.74
6262 7401 4.329545 TGAAGACCCTGCCGCCAC 62.330 66.667 0.00 0.00 0.00 5.01
6263 7402 4.329545 GTGAAGACCCTGCCGCCA 62.330 66.667 0.00 0.00 0.00 5.69
6264 7403 3.842925 TTGTGAAGACCCTGCCGCC 62.843 63.158 0.00 0.00 0.00 6.13
6265 7404 1.856265 CTTTGTGAAGACCCTGCCGC 61.856 60.000 0.00 0.00 34.71 6.53
6266 7405 0.250295 TCTTTGTGAAGACCCTGCCG 60.250 55.000 0.00 0.00 36.99 5.69
6267 7406 2.087646 GATCTTTGTGAAGACCCTGCC 58.912 52.381 0.00 0.00 44.27 4.85
6268 7407 2.746362 CAGATCTTTGTGAAGACCCTGC 59.254 50.000 0.00 0.00 44.27 4.85
6269 7408 2.746362 GCAGATCTTTGTGAAGACCCTG 59.254 50.000 0.00 12.31 44.27 4.45
6270 7409 2.373169 TGCAGATCTTTGTGAAGACCCT 59.627 45.455 0.00 0.00 44.27 4.34
6271 7410 2.783135 TGCAGATCTTTGTGAAGACCC 58.217 47.619 0.00 0.00 44.27 4.46
6272 7411 3.427233 GCATGCAGATCTTTGTGAAGACC 60.427 47.826 14.21 0.00 44.27 3.85
6273 7412 3.427233 GGCATGCAGATCTTTGTGAAGAC 60.427 47.826 21.36 0.00 44.27 3.01
6274 7413 2.751259 GGCATGCAGATCTTTGTGAAGA 59.249 45.455 21.36 0.00 45.45 2.87
6275 7414 2.490509 TGGCATGCAGATCTTTGTGAAG 59.509 45.455 21.36 0.00 0.00 3.02
6276 7415 2.229543 GTGGCATGCAGATCTTTGTGAA 59.770 45.455 21.36 0.00 0.00 3.18
6277 7416 1.814394 GTGGCATGCAGATCTTTGTGA 59.186 47.619 21.36 0.00 0.00 3.58
6278 7417 1.135199 GGTGGCATGCAGATCTTTGTG 60.135 52.381 21.36 0.00 0.00 3.33
6279 7418 1.180029 GGTGGCATGCAGATCTTTGT 58.820 50.000 21.36 0.00 0.00 2.83
6280 7419 1.135199 GTGGTGGCATGCAGATCTTTG 60.135 52.381 21.36 0.00 0.00 2.77
6281 7420 1.180029 GTGGTGGCATGCAGATCTTT 58.820 50.000 21.36 0.00 0.00 2.52
6282 7421 0.038599 TGTGGTGGCATGCAGATCTT 59.961 50.000 21.36 0.00 0.00 2.40
6283 7422 0.679002 GTGTGGTGGCATGCAGATCT 60.679 55.000 21.36 0.00 0.00 2.75
6284 7423 0.961857 TGTGTGGTGGCATGCAGATC 60.962 55.000 21.36 6.12 0.00 2.75
6285 7424 0.963856 CTGTGTGGTGGCATGCAGAT 60.964 55.000 21.36 0.00 0.00 2.90
6286 7425 1.601477 CTGTGTGGTGGCATGCAGA 60.601 57.895 21.36 1.62 0.00 4.26
6287 7426 2.632544 CCTGTGTGGTGGCATGCAG 61.633 63.158 21.36 5.17 0.00 4.41
6288 7427 2.598099 CCTGTGTGGTGGCATGCA 60.598 61.111 21.36 2.54 0.00 3.96
6297 7436 1.070758 ACTAGTCAAGCACCTGTGTGG 59.929 52.381 0.00 0.00 42.99 4.17
6298 7437 2.533266 ACTAGTCAAGCACCTGTGTG 57.467 50.000 0.00 0.00 45.65 3.82
6299 7438 2.545952 CGAACTAGTCAAGCACCTGTGT 60.546 50.000 0.00 0.00 0.00 3.72
6300 7439 2.061773 CGAACTAGTCAAGCACCTGTG 58.938 52.381 0.00 0.00 0.00 3.66
6301 7440 1.687123 ACGAACTAGTCAAGCACCTGT 59.313 47.619 0.00 0.00 0.00 4.00
6302 7441 2.440539 ACGAACTAGTCAAGCACCTG 57.559 50.000 0.00 0.00 0.00 4.00
6303 7442 3.470645 AAACGAACTAGTCAAGCACCT 57.529 42.857 0.00 0.00 0.00 4.00
6304 7443 4.304939 ACTAAACGAACTAGTCAAGCACC 58.695 43.478 0.00 0.00 0.00 5.01
6305 7444 5.344396 GGTACTAAACGAACTAGTCAAGCAC 59.656 44.000 0.00 0.00 31.98 4.40
6306 7445 5.464168 GGTACTAAACGAACTAGTCAAGCA 58.536 41.667 0.00 0.00 31.98 3.91
6307 7446 4.861462 GGGTACTAAACGAACTAGTCAAGC 59.139 45.833 0.00 0.00 31.98 4.01
6308 7447 5.860716 GTGGGTACTAAACGAACTAGTCAAG 59.139 44.000 0.00 0.00 31.98 3.02
6309 7448 5.562696 CGTGGGTACTAAACGAACTAGTCAA 60.563 44.000 0.00 0.00 39.64 3.18
6310 7449 4.083324 CGTGGGTACTAAACGAACTAGTCA 60.083 45.833 0.00 0.00 39.64 3.41
6311 7450 4.083271 ACGTGGGTACTAAACGAACTAGTC 60.083 45.833 17.93 0.00 39.64 2.59
6312 7451 3.821033 ACGTGGGTACTAAACGAACTAGT 59.179 43.478 17.93 0.00 39.64 2.57
6313 7452 4.425577 ACGTGGGTACTAAACGAACTAG 57.574 45.455 17.93 0.00 39.64 2.57
6314 7453 5.291293 GTACGTGGGTACTAAACGAACTA 57.709 43.478 17.93 2.87 44.53 2.24
6315 7454 4.160736 GTACGTGGGTACTAAACGAACT 57.839 45.455 17.93 3.61 44.53 3.01
6326 7465 0.248012 CACATGGCAGTACGTGGGTA 59.752 55.000 0.00 0.00 0.00 3.69
6327 7466 1.003839 CACATGGCAGTACGTGGGT 60.004 57.895 0.00 0.00 0.00 4.51
6328 7467 1.745115 CCACATGGCAGTACGTGGG 60.745 63.158 16.27 0.89 44.26 4.61
6329 7468 1.745115 CCCACATGGCAGTACGTGG 60.745 63.158 16.84 16.84 46.93 4.94
6330 7469 0.248012 TACCCACATGGCAGTACGTG 59.752 55.000 0.00 0.00 37.83 4.49
6331 7470 0.248289 GTACCCACATGGCAGTACGT 59.752 55.000 0.00 0.00 37.83 3.57
6332 7471 3.059603 GTACCCACATGGCAGTACG 57.940 57.895 0.00 0.00 37.83 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.