Multiple sequence alignment - TraesCS3B01G357400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G357400 chr3B 100.000 8312 0 0 1 8312 567266472 567258161 0.000000e+00 15350.0
1 TraesCS3B01G357400 chr3B 79.645 845 80 42 916 1729 567281119 567280336 2.660000e-144 523.0
2 TraesCS3B01G357400 chr3B 92.000 125 10 0 357 481 55738050 55738174 8.570000e-40 176.0
3 TraesCS3B01G357400 chr3B 87.129 101 12 1 638 738 567281326 567281227 6.820000e-21 113.0
4 TraesCS3B01G357400 chr3B 96.552 58 2 0 7838 7895 187150435 187150492 6.870000e-16 97.1
5 TraesCS3B01G357400 chr3B 95.082 61 2 1 7838 7898 187150456 187150397 2.470000e-15 95.3
6 TraesCS3B01G357400 chr3B 89.706 68 7 0 8002 8069 794919641 794919708 4.130000e-13 87.9
7 TraesCS3B01G357400 chr3A 96.905 2940 78 9 4908 7840 572732964 572730031 0.000000e+00 4913.0
8 TraesCS3B01G357400 chr3A 92.312 2003 93 25 472 2425 572737279 572735289 0.000000e+00 2789.0
9 TraesCS3B01G357400 chr3A 88.284 2296 103 72 2558 4764 572735236 572733018 0.000000e+00 2597.0
10 TraesCS3B01G357400 chr3A 82.897 573 43 27 916 1477 572746266 572745738 1.630000e-126 464.0
11 TraesCS3B01G357400 chr3A 95.473 243 11 0 8070 8312 572729214 572728972 1.010000e-103 388.0
12 TraesCS3B01G357400 chr3A 85.388 219 20 4 76 290 572737509 572737299 5.050000e-52 217.0
13 TraesCS3B01G357400 chr3A 95.536 112 5 0 7891 8002 572730034 572729923 6.630000e-41 180.0
14 TraesCS3B01G357400 chr3A 92.647 68 5 0 8002 8069 647448433 647448500 1.910000e-16 99.0
15 TraesCS3B01G357400 chr3D 96.768 2939 72 16 4908 7840 434049198 434046277 0.000000e+00 4879.0
16 TraesCS3B01G357400 chr3D 90.573 2111 96 38 2790 4860 434051247 434049200 0.000000e+00 2700.0
17 TraesCS3B01G357400 chr3D 89.679 2151 96 44 469 2558 434053541 434051456 0.000000e+00 2627.0
18 TraesCS3B01G357400 chr3D 80.695 979 98 46 916 1860 434067628 434066707 0.000000e+00 676.0
19 TraesCS3B01G357400 chr3D 92.097 329 9 1 8001 8312 434045166 434044838 1.650000e-121 448.0
20 TraesCS3B01G357400 chr3D 88.396 293 27 7 76 363 434053830 434053540 6.180000e-91 346.0
21 TraesCS3B01G357400 chr3D 96.429 112 4 0 7891 8002 434046280 434046169 1.420000e-42 185.0
22 TraesCS3B01G357400 chr3D 96.667 60 0 2 7848 7906 23867316 23867258 1.910000e-16 99.0
23 TraesCS3B01G357400 chr3D 85.075 67 8 1 1 67 434053930 434053866 5.380000e-07 67.6
24 TraesCS3B01G357400 chrUn 96.364 110 4 0 364 473 347838625 347838516 1.840000e-41 182.0
25 TraesCS3B01G357400 chrUn 96.364 110 4 0 364 473 441816730 441816839 1.840000e-41 182.0
26 TraesCS3B01G357400 chrUn 95.536 112 5 0 360 471 92940906 92940795 6.630000e-41 180.0
27 TraesCS3B01G357400 chrUn 96.491 57 2 0 235 291 320256174 320256118 2.470000e-15 95.3
28 TraesCS3B01G357400 chrUn 96.491 57 2 0 235 291 357700824 357700768 2.470000e-15 95.3
29 TraesCS3B01G357400 chr2D 86.127 173 18 5 2601 2772 536380184 536380017 1.840000e-41 182.0
30 TraesCS3B01G357400 chr2D 96.330 109 4 0 363 471 344879983 344879875 6.630000e-41 180.0
31 TraesCS3B01G357400 chr2D 89.706 68 7 0 8002 8069 270854652 270854585 4.130000e-13 87.9
32 TraesCS3B01G357400 chr7A 95.536 112 5 0 360 471 600791731 600791842 6.630000e-41 180.0
33 TraesCS3B01G357400 chr7A 98.246 57 1 0 235 291 460121899 460121955 5.310000e-17 100.0
34 TraesCS3B01G357400 chr7A 89.706 68 7 0 8002 8069 603560280 603560347 4.130000e-13 87.9
35 TraesCS3B01G357400 chr5B 94.737 114 6 0 358 471 45040151 45040264 2.380000e-40 178.0
36 TraesCS3B01G357400 chr5B 90.226 133 9 4 347 478 474610245 474610374 3.990000e-38 171.0
37 TraesCS3B01G357400 chr5B 89.706 68 7 0 8002 8069 149676156 149676223 4.130000e-13 87.9
38 TraesCS3B01G357400 chr5B 85.714 84 9 3 7836 7916 692506723 692506806 1.490000e-12 86.1
39 TraesCS3B01G357400 chr4D 95.413 109 5 0 363 471 29093476 29093368 3.080000e-39 174.0
40 TraesCS3B01G357400 chr5D 98.246 57 1 0 235 291 481806183 481806127 5.310000e-17 100.0
41 TraesCS3B01G357400 chr5D 91.176 68 5 1 235 302 127258313 127258379 3.190000e-14 91.6
42 TraesCS3B01G357400 chr1A 98.246 57 1 0 235 291 576371087 576371143 5.310000e-17 100.0
43 TraesCS3B01G357400 chr5A 92.647 68 5 0 8002 8069 536448589 536448656 1.910000e-16 99.0
44 TraesCS3B01G357400 chr4A 96.552 58 1 1 7848 7905 547986485 547986541 2.470000e-15 95.3
45 TraesCS3B01G357400 chr4A 91.176 68 6 0 8002 8069 617925817 617925884 8.880000e-15 93.5
46 TraesCS3B01G357400 chr4A 89.706 68 7 0 8002 8069 115288639 115288572 4.130000e-13 87.9
47 TraesCS3B01G357400 chr2A 95.082 61 2 1 7848 7908 153361900 153361841 2.470000e-15 95.3
48 TraesCS3B01G357400 chr2A 96.296 54 2 0 238 291 543757800 543757747 1.150000e-13 89.8
49 TraesCS3B01G357400 chr2A 88.235 68 8 0 8002 8069 24138155 24138088 1.920000e-11 82.4
50 TraesCS3B01G357400 chr7B 100.000 50 0 0 7848 7897 479326936 479326985 8.880000e-15 93.5
51 TraesCS3B01G357400 chr6B 89.189 74 4 4 7834 7906 62633010 62632940 1.150000e-13 89.8
52 TraesCS3B01G357400 chr6B 89.041 73 5 3 7848 7918 38619647 38619718 4.130000e-13 87.9
53 TraesCS3B01G357400 chr7D 91.111 45 0 2 145 185 606797920 606797964 3.240000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G357400 chr3B 567258161 567266472 8311 True 15350.000000 15350 100.000000 1 8312 1 chr3B.!!$R2 8311
1 TraesCS3B01G357400 chr3B 567280336 567281326 990 True 318.000000 523 83.387000 638 1729 2 chr3B.!!$R3 1091
2 TraesCS3B01G357400 chr3A 572728972 572737509 8537 True 1847.333333 4913 92.316333 76 8312 6 chr3A.!!$R2 8236
3 TraesCS3B01G357400 chr3A 572745738 572746266 528 True 464.000000 464 82.897000 916 1477 1 chr3A.!!$R1 561
4 TraesCS3B01G357400 chr3D 434044838 434053930 9092 True 1607.514286 4879 91.288143 1 8312 7 chr3D.!!$R3 8311
5 TraesCS3B01G357400 chr3D 434066707 434067628 921 True 676.000000 676 80.695000 916 1860 1 chr3D.!!$R2 944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 839 0.316689 GCCACACGCACACTAAACAC 60.317 55.000 0.00 0.0 37.47 3.32 F
1661 1798 0.179215 CGCTCCAATTGCTCGTGTTC 60.179 55.000 0.00 0.0 0.00 3.18 F
2593 2776 0.036483 TGCTTGCTTCCATCTGCGTA 60.036 50.000 0.00 0.0 0.00 4.42 F
2866 3104 0.174845 TTCCCGGCGTGTGATCTAAG 59.825 55.000 6.01 0.0 0.00 2.18 F
3969 4250 0.575390 AGCGTTCGTGTTCTGTTTCG 59.425 50.000 0.00 0.0 0.00 3.46 F
4631 4930 1.076332 ACGTTACAAAGATCCGCAGC 58.924 50.000 0.00 0.0 0.00 5.25 F
5418 5728 1.373059 GAGGCTAGGGTATGCTGCC 59.627 63.158 0.00 0.0 43.52 4.85 F
6155 6468 1.757118 TCGCCTTCTCCTGATAACCAG 59.243 52.381 0.00 0.0 42.55 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2574 2757 0.036483 TACGCAGATGGAAGCAAGCA 60.036 50.000 0.00 0.0 0.00 3.91 R
3084 3323 0.107456 TCCCGAGCTACTACTACCCG 59.893 60.000 0.00 0.0 0.00 5.28 R
4283 4573 0.039978 ACGATATTCGCCGCTCTGAG 60.040 55.000 0.00 0.0 45.12 3.35 R
4583 4882 0.464036 ACCACGAGACAAACAGAGCA 59.536 50.000 0.00 0.0 0.00 4.26 R
4897 5206 0.036022 AGGACTGCTGGTTGAAGAGC 59.964 55.000 0.00 0.0 35.65 4.09 R
6226 6539 1.135139 CAGATCCGTGGTCACTACTGG 59.865 57.143 0.00 0.0 0.00 4.00 R
6361 6674 1.654220 CTGCCGTTTGTTCCACCAG 59.346 57.895 0.00 0.0 0.00 4.00 R
7988 8307 1.876156 CCAAAGTGAGCACAAGGAGAC 59.124 52.381 3.19 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.989296 ATAGATAGCTCATAAGGACAATAGTCT 57.011 33.333 0.00 0.00 44.36 3.24
89 117 2.972021 TCTCCATGATATCCTCGCCAAA 59.028 45.455 0.00 0.00 0.00 3.28
101 129 1.457303 CTCGCCAAACTTCAAGAGACG 59.543 52.381 0.00 0.00 0.00 4.18
110 138 6.905609 CCAAACTTCAAGAGACGTAAGAAAAC 59.094 38.462 0.00 0.00 43.62 2.43
118 146 6.356186 AGAGACGTAAGAAAACCAATACCT 57.644 37.500 0.00 0.00 43.62 3.08
119 147 6.766429 AGAGACGTAAGAAAACCAATACCTT 58.234 36.000 0.00 0.00 43.62 3.50
122 151 7.222161 AGACGTAAGAAAACCAATACCTTTCT 58.778 34.615 0.00 0.00 40.31 2.52
138 167 6.360370 ACCTTTCTCATTGTAGAGTGCTTA 57.640 37.500 0.00 0.00 36.97 3.09
194 224 3.006430 TGTGCTTATTTCTCGAGTGTGGA 59.994 43.478 13.13 0.00 0.00 4.02
291 323 9.784680 TTAAAGTAGTGATCTAAACGCTCTTAG 57.215 33.333 0.00 0.00 0.00 2.18
292 324 7.393841 AAGTAGTGATCTAAACGCTCTTAGT 57.606 36.000 0.00 0.00 31.86 2.24
307 339 3.107601 TCTTAGTGGAGGGAGTTCATGG 58.892 50.000 0.00 0.00 0.00 3.66
308 340 2.642171 TAGTGGAGGGAGTTCATGGT 57.358 50.000 0.00 0.00 0.00 3.55
309 341 1.280457 AGTGGAGGGAGTTCATGGTC 58.720 55.000 0.00 0.00 0.00 4.02
310 342 1.203364 AGTGGAGGGAGTTCATGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
311 343 1.630878 GTGGAGGGAGTTCATGGTCTT 59.369 52.381 0.00 0.00 0.00 3.01
340 372 4.137543 CCTAAATGGCGAGGCTTTATCTT 58.862 43.478 0.00 0.00 0.00 2.40
346 378 2.094752 GGCGAGGCTTTATCTTGCAAAA 60.095 45.455 0.00 0.00 42.02 2.44
373 405 9.760077 AAATTGTTGTAGTATATACTTCCTCCG 57.240 33.333 20.21 0.00 37.73 4.63
374 406 7.886629 TTGTTGTAGTATATACTTCCTCCGT 57.113 36.000 20.21 0.00 37.73 4.69
375 407 7.886629 TGTTGTAGTATATACTTCCTCCGTT 57.113 36.000 20.21 0.00 37.73 4.44
376 408 7.934457 TGTTGTAGTATATACTTCCTCCGTTC 58.066 38.462 20.21 3.90 37.73 3.95
377 409 6.791887 TGTAGTATATACTTCCTCCGTTCG 57.208 41.667 20.21 0.00 37.73 3.95
378 410 5.702670 TGTAGTATATACTTCCTCCGTTCGG 59.297 44.000 20.21 4.74 37.73 4.30
379 411 4.978099 AGTATATACTTCCTCCGTTCGGA 58.022 43.478 9.71 13.34 31.13 4.55
380 412 5.380043 AGTATATACTTCCTCCGTTCGGAA 58.620 41.667 14.79 0.00 38.18 4.30
381 413 6.008960 AGTATATACTTCCTCCGTTCGGAAT 58.991 40.000 14.79 7.15 39.64 3.01
382 414 5.803237 ATATACTTCCTCCGTTCGGAATT 57.197 39.130 14.79 0.00 39.64 2.17
383 415 6.906157 ATATACTTCCTCCGTTCGGAATTA 57.094 37.500 14.79 1.22 39.64 1.40
384 416 3.242549 ACTTCCTCCGTTCGGAATTAC 57.757 47.619 14.79 0.00 39.64 1.89
385 417 2.830321 ACTTCCTCCGTTCGGAATTACT 59.170 45.455 14.79 0.00 39.64 2.24
386 418 3.119209 ACTTCCTCCGTTCGGAATTACTC 60.119 47.826 14.79 0.00 39.64 2.59
387 419 1.402968 TCCTCCGTTCGGAATTACTCG 59.597 52.381 14.79 1.97 33.41 4.18
388 420 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
389 421 2.416431 CCTCCGTTCGGAATTACTCGTT 60.416 50.000 14.79 0.00 33.41 3.85
390 422 3.181497 CCTCCGTTCGGAATTACTCGTTA 60.181 47.826 14.79 0.00 33.41 3.18
391 423 4.414852 CTCCGTTCGGAATTACTCGTTAA 58.585 43.478 14.79 0.00 33.41 2.01
392 424 4.804108 TCCGTTCGGAATTACTCGTTAAA 58.196 39.130 11.66 0.00 0.00 1.52
393 425 4.858692 TCCGTTCGGAATTACTCGTTAAAG 59.141 41.667 11.66 0.00 0.00 1.85
394 426 4.858692 CCGTTCGGAATTACTCGTTAAAGA 59.141 41.667 5.19 0.00 0.00 2.52
395 427 5.345741 CCGTTCGGAATTACTCGTTAAAGAA 59.654 40.000 5.19 0.00 0.00 2.52
396 428 6.128849 CCGTTCGGAATTACTCGTTAAAGAAA 60.129 38.462 5.19 0.00 0.00 2.52
397 429 7.412237 CCGTTCGGAATTACTCGTTAAAGAAAT 60.412 37.037 5.19 0.00 0.00 2.17
398 430 7.421613 CGTTCGGAATTACTCGTTAAAGAAATG 59.578 37.037 0.00 0.00 0.00 2.32
399 431 8.437742 GTTCGGAATTACTCGTTAAAGAAATGA 58.562 33.333 0.00 0.00 0.00 2.57
400 432 8.537049 TCGGAATTACTCGTTAAAGAAATGAA 57.463 30.769 0.00 0.00 32.68 2.57
401 433 9.158233 TCGGAATTACTCGTTAAAGAAATGAAT 57.842 29.630 0.00 0.00 32.68 2.57
402 434 9.210426 CGGAATTACTCGTTAAAGAAATGAATG 57.790 33.333 0.00 0.00 32.68 2.67
444 476 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
445 477 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
446 478 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
447 479 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
448 480 9.072375 TGTAGATACATCCATTTTTGTGACAAA 57.928 29.630 6.66 6.66 0.00 2.83
456 488 9.743937 CATCCATTTTTGTGACAAATAATTTCG 57.256 29.630 11.97 4.05 0.00 3.46
457 489 9.703892 ATCCATTTTTGTGACAAATAATTTCGA 57.296 25.926 11.97 9.35 0.00 3.71
458 490 9.534565 TCCATTTTTGTGACAAATAATTTCGAA 57.465 25.926 11.97 0.94 0.00 3.71
459 491 9.579610 CCATTTTTGTGACAAATAATTTCGAAC 57.420 29.630 11.97 0.00 0.00 3.95
460 492 9.288845 CATTTTTGTGACAAATAATTTCGAACG 57.711 29.630 11.97 0.00 0.00 3.95
461 493 6.978024 TTTGTGACAAATAATTTCGAACGG 57.022 33.333 6.66 0.00 0.00 4.44
462 494 5.926214 TGTGACAAATAATTTCGAACGGA 57.074 34.783 0.00 0.00 0.00 4.69
463 495 5.922546 TGTGACAAATAATTTCGAACGGAG 58.077 37.500 0.00 0.00 0.00 4.63
464 496 5.106869 TGTGACAAATAATTTCGAACGGAGG 60.107 40.000 0.00 0.00 0.00 4.30
465 497 4.393680 TGACAAATAATTTCGAACGGAGGG 59.606 41.667 0.00 0.00 0.00 4.30
466 498 4.581868 ACAAATAATTTCGAACGGAGGGA 58.418 39.130 0.00 0.00 0.00 4.20
467 499 4.634443 ACAAATAATTTCGAACGGAGGGAG 59.366 41.667 0.00 0.00 0.00 4.30
482 514 5.047377 ACGGAGGGAGTACGTATTTAAAACA 60.047 40.000 0.00 0.00 39.30 2.83
506 540 4.370364 ACAAATTATTGGTTAGGCTGCG 57.630 40.909 0.00 0.00 41.01 5.18
539 573 0.326264 AAGAATTCGCAGCCAGGTCT 59.674 50.000 0.00 0.00 0.00 3.85
549 583 1.675641 GCCAGGTCTTGCCGTTGAT 60.676 57.895 0.00 0.00 43.70 2.57
552 586 2.432444 CCAGGTCTTGCCGTTGATAAA 58.568 47.619 0.00 0.00 43.70 1.40
553 587 2.161609 CCAGGTCTTGCCGTTGATAAAC 59.838 50.000 0.00 0.00 43.70 2.01
554 588 3.074412 CAGGTCTTGCCGTTGATAAACT 58.926 45.455 0.00 0.00 43.70 2.66
555 589 3.074412 AGGTCTTGCCGTTGATAAACTG 58.926 45.455 0.00 0.00 43.70 3.16
556 590 2.161609 GGTCTTGCCGTTGATAAACTGG 59.838 50.000 0.00 0.00 0.00 4.00
557 591 3.071479 GTCTTGCCGTTGATAAACTGGA 58.929 45.455 7.71 0.00 0.00 3.86
558 592 3.125316 GTCTTGCCGTTGATAAACTGGAG 59.875 47.826 7.71 0.00 0.00 3.86
581 615 4.148348 GCTACACTACACAAGTTCTCAACG 59.852 45.833 0.00 0.00 35.76 4.10
594 628 0.439985 CTCAACGGTGCATCGAAGTG 59.560 55.000 28.98 19.75 0.00 3.16
618 652 0.898320 ACTCCTGAATCACGAGGTGG 59.102 55.000 12.55 0.00 33.87 4.61
642 676 1.570347 CGAGGACTAGCCGGATCTCG 61.570 65.000 13.16 13.16 43.43 4.04
758 812 2.753966 CGTCAAATCTGGCCAGGCG 61.754 63.158 32.23 17.35 0.00 5.52
785 839 0.316689 GCCACACGCACACTAAACAC 60.317 55.000 0.00 0.00 37.47 3.32
787 841 1.003972 CCACACGCACACTAAACACAG 60.004 52.381 0.00 0.00 0.00 3.66
788 842 0.655733 ACACGCACACTAAACACAGC 59.344 50.000 0.00 0.00 0.00 4.40
792 854 1.063321 CGCACACTAAACACAGCACAA 59.937 47.619 0.00 0.00 0.00 3.33
865 927 2.916269 CCTTTCCTTCCTTCCTTCCTCT 59.084 50.000 0.00 0.00 0.00 3.69
1370 1454 3.500642 CTCGTCTCTCAGCGCCGA 61.501 66.667 2.29 2.64 0.00 5.54
1377 1461 4.538283 CTCAGCGCCGACGACGAT 62.538 66.667 8.02 0.00 43.93 3.73
1415 1505 2.781258 TAAGCCTTCCCTGCCCCTGA 62.781 60.000 0.00 0.00 0.00 3.86
1446 1542 1.630126 TTCTCCTCTGCTGGGCCATC 61.630 60.000 6.72 2.53 0.00 3.51
1477 1585 1.138883 TCAAGGCGATCCGAACTCG 59.861 57.895 0.00 0.00 39.11 4.18
1529 1637 4.671569 GCGCTAGCCATCCTCCGG 62.672 72.222 9.66 0.00 37.42 5.14
1571 1692 0.818445 TCCGGCGAGGAGATAGACAC 60.818 60.000 9.30 0.00 45.98 3.67
1574 1699 1.008309 GCGAGGAGATAGACACGGC 60.008 63.158 0.00 0.00 0.00 5.68
1661 1798 0.179215 CGCTCCAATTGCTCGTGTTC 60.179 55.000 0.00 0.00 0.00 3.18
1808 1967 1.385368 ATGCCAGGGACAGCATTGT 59.615 52.632 0.00 0.00 46.00 2.71
1879 2042 0.723981 GATCTCCTGCTTGTCGTTGC 59.276 55.000 0.00 0.00 0.00 4.17
1909 2078 3.678056 ATGCAAGACCAGTTCTCGTTA 57.322 42.857 0.00 0.00 31.02 3.18
1912 2081 2.987821 GCAAGACCAGTTCTCGTTACTC 59.012 50.000 0.00 0.00 31.02 2.59
1913 2082 3.576648 CAAGACCAGTTCTCGTTACTCC 58.423 50.000 0.00 0.00 31.02 3.85
2006 2183 7.907389 TCTGCTAGGAATAGTTTCTTTCTGAA 58.093 34.615 0.00 0.00 32.16 3.02
2062 2239 2.312390 AGCCAGTTAGCTAGCTACTCC 58.688 52.381 24.09 14.34 42.70 3.85
2157 2335 8.754773 ACTGTAAGGTACCAATCAGGTGATGC 62.755 46.154 23.85 0.00 46.49 3.91
2178 2356 3.673338 GCCAATTCGCAACTAGAAAAACC 59.327 43.478 0.00 0.00 0.00 3.27
2185 2363 4.022416 TCGCAACTAGAAAAACCAATGCAT 60.022 37.500 0.00 0.00 33.00 3.96
2237 2415 1.285962 ACACCAGCTTAATGGCCTGAT 59.714 47.619 3.32 0.00 44.80 2.90
2389 2567 1.134670 ACCCGCTAGCTGTCTTTCATC 60.135 52.381 13.93 0.00 0.00 2.92
2407 2585 7.444792 TCTTTCATCGTCCTCTTATACCTAGAC 59.555 40.741 0.00 0.00 0.00 2.59
2449 2627 4.994907 CATGCTGATGGATCCTTTTTCA 57.005 40.909 14.23 9.74 0.00 2.69
2450 2628 5.531122 CATGCTGATGGATCCTTTTTCAT 57.469 39.130 14.23 8.24 0.00 2.57
2451 2629 5.914033 CATGCTGATGGATCCTTTTTCATT 58.086 37.500 14.23 0.00 0.00 2.57
2453 2631 5.969423 TGCTGATGGATCCTTTTTCATTTC 58.031 37.500 14.23 4.63 0.00 2.17
2463 2643 5.636837 TCCTTTTTCATTTCGGAATTAGCG 58.363 37.500 0.00 0.00 0.00 4.26
2501 2684 7.905604 TTGTGTCTCCAGTGTTATATTTCTG 57.094 36.000 0.00 0.00 0.00 3.02
2506 2689 8.812972 TGTCTCCAGTGTTATATTTCTGTAAGT 58.187 33.333 0.00 0.00 33.76 2.24
2541 2724 4.292186 AGAAGTTGCTTGCTTCCATCTA 57.708 40.909 10.35 0.00 42.27 1.98
2555 2738 8.815565 TGCTTCCATCTATGTAAATTTGGTTA 57.184 30.769 0.00 0.00 0.00 2.85
2556 2739 8.902806 TGCTTCCATCTATGTAAATTTGGTTAG 58.097 33.333 0.00 0.00 0.00 2.34
2557 2740 8.352942 GCTTCCATCTATGTAAATTTGGTTAGG 58.647 37.037 0.00 0.00 0.00 2.69
2558 2741 9.627123 CTTCCATCTATGTAAATTTGGTTAGGA 57.373 33.333 0.00 0.00 0.00 2.94
2590 2773 1.139095 GCTGCTTGCTTCCATCTGC 59.861 57.895 0.00 0.00 38.95 4.26
2591 2774 1.428219 CTGCTTGCTTCCATCTGCG 59.572 57.895 0.00 0.00 0.00 5.18
2592 2775 1.302752 TGCTTGCTTCCATCTGCGT 60.303 52.632 0.00 0.00 0.00 5.24
2593 2776 0.036483 TGCTTGCTTCCATCTGCGTA 60.036 50.000 0.00 0.00 0.00 4.42
2594 2777 1.086696 GCTTGCTTCCATCTGCGTAA 58.913 50.000 0.00 0.00 0.00 3.18
2595 2778 1.468520 GCTTGCTTCCATCTGCGTAAA 59.531 47.619 0.00 0.00 0.00 2.01
2596 2779 2.095263 GCTTGCTTCCATCTGCGTAAAA 60.095 45.455 0.00 0.00 0.00 1.52
2597 2780 3.428045 GCTTGCTTCCATCTGCGTAAAAT 60.428 43.478 0.00 0.00 0.00 1.82
2598 2781 4.737054 CTTGCTTCCATCTGCGTAAAATT 58.263 39.130 0.00 0.00 0.00 1.82
2599 2782 5.676079 GCTTGCTTCCATCTGCGTAAAATTA 60.676 40.000 0.00 0.00 0.00 1.40
2600 2783 5.484173 TGCTTCCATCTGCGTAAAATTAG 57.516 39.130 0.00 0.00 0.00 1.73
2601 2784 4.335315 TGCTTCCATCTGCGTAAAATTAGG 59.665 41.667 0.00 0.00 0.00 2.69
2602 2785 4.335594 GCTTCCATCTGCGTAAAATTAGGT 59.664 41.667 0.00 0.00 0.00 3.08
2603 2786 5.163652 GCTTCCATCTGCGTAAAATTAGGTT 60.164 40.000 0.00 0.00 0.00 3.50
2604 2787 6.431198 TTCCATCTGCGTAAAATTAGGTTC 57.569 37.500 0.00 0.00 0.00 3.62
2605 2788 5.741011 TCCATCTGCGTAAAATTAGGTTCT 58.259 37.500 0.00 0.00 0.00 3.01
2606 2789 6.880484 TCCATCTGCGTAAAATTAGGTTCTA 58.120 36.000 0.00 0.00 0.00 2.10
2637 2830 4.507710 CATGAAGTGCCTAACTAGAAGCA 58.492 43.478 0.00 0.00 38.56 3.91
2693 2898 2.010497 CACTGACTAGTGCTCGCTCTA 58.990 52.381 0.00 1.38 46.93 2.43
2694 2899 2.420372 CACTGACTAGTGCTCGCTCTAA 59.580 50.000 0.00 0.00 46.93 2.10
2697 2902 3.082548 TGACTAGTGCTCGCTCTAACTT 58.917 45.455 0.00 0.00 0.00 2.66
2698 2903 3.119814 TGACTAGTGCTCGCTCTAACTTG 60.120 47.826 0.00 0.00 0.00 3.16
2706 2911 1.446272 GCTCTAACTTGCGGCGACT 60.446 57.895 12.98 0.00 0.00 4.18
2719 2924 1.004927 CGGCGACTTGTAGCTAATTGC 60.005 52.381 0.00 0.00 43.29 3.56
2741 2946 1.129437 GCGACTTGTTTCCTCTGCATC 59.871 52.381 0.00 0.00 0.00 3.91
2764 2969 3.466836 TCGATCAAAGTTTGACAGCACT 58.533 40.909 20.26 3.64 43.48 4.40
2768 2973 2.355756 TCAAAGTTTGACAGCACTCTGC 59.644 45.455 14.35 0.00 44.10 4.26
2770 2975 5.402562 TCAAAGTTTGACAGCACTCTGCTT 61.403 41.667 14.35 0.00 42.56 3.91
2782 2987 3.190118 GCACTCTGCTTCAAAGTATTGCT 59.810 43.478 0.00 0.00 40.96 3.91
2783 2988 4.320788 GCACTCTGCTTCAAAGTATTGCTT 60.321 41.667 0.00 0.00 40.96 3.91
2784 2989 5.791681 GCACTCTGCTTCAAAGTATTGCTTT 60.792 40.000 0.00 0.00 43.16 3.51
2808 3044 1.351076 CCCCTGTTGGATGCCTTTTT 58.649 50.000 0.00 0.00 35.39 1.94
2866 3104 0.174845 TTCCCGGCGTGTGATCTAAG 59.825 55.000 6.01 0.00 0.00 2.18
2880 3118 5.822519 TGTGATCTAAGTTCAGCTTGTTTGT 59.177 36.000 0.00 0.00 38.05 2.83
2883 3121 7.166473 GTGATCTAAGTTCAGCTTGTTTGTTTG 59.834 37.037 0.00 0.00 38.05 2.93
2884 3122 6.751514 TCTAAGTTCAGCTTGTTTGTTTGA 57.248 33.333 0.00 0.00 38.05 2.69
2886 3124 7.771183 TCTAAGTTCAGCTTGTTTGTTTGATT 58.229 30.769 0.00 0.00 38.05 2.57
2946 3184 2.844839 GGCGAGGGGAGGCAGTAT 60.845 66.667 0.00 0.00 0.00 2.12
3035 3274 3.423154 GGCTATGCCGTATGCGCC 61.423 66.667 4.18 0.00 45.60 6.53
3071 3310 1.676438 GCGCAAAATCGACGACGGTA 61.676 55.000 0.30 0.00 40.21 4.02
3084 3323 2.031682 ACGACGGTAATATGGCTACGAC 60.032 50.000 0.00 0.00 0.00 4.34
3089 3328 2.819608 GGTAATATGGCTACGACGGGTA 59.180 50.000 0.00 0.00 0.00 3.69
3125 3364 0.994995 CTGATTGCCGACGAGTCTTG 59.005 55.000 0.00 0.00 0.00 3.02
3143 3382 4.865365 GTCTTGTAGCTATGTCAGGAACAC 59.135 45.833 0.00 0.00 41.75 3.32
3186 3426 1.429148 GGAATGGAAGTACGGCTGCG 61.429 60.000 0.00 0.00 0.00 5.18
3308 3552 4.787280 CCTCGCCACCTCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
3309 3553 3.151022 CTCGCCACCTCCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
3454 3712 1.022982 CGCATCCATCCATCCATCCG 61.023 60.000 0.00 0.00 0.00 4.18
3876 4157 2.923035 CATCCGGGCCCCTCGTAT 60.923 66.667 18.66 0.00 0.00 3.06
3877 4158 2.603776 ATCCGGGCCCCTCGTATC 60.604 66.667 18.66 0.00 0.00 2.24
3920 4201 3.300667 CTGCCGCGTTCTGTTCTGC 62.301 63.158 4.92 0.00 0.00 4.26
3921 4202 3.044305 GCCGCGTTCTGTTCTGCT 61.044 61.111 4.92 0.00 0.00 4.24
3922 4203 2.856032 CCGCGTTCTGTTCTGCTG 59.144 61.111 4.92 0.00 0.00 4.41
3969 4250 0.575390 AGCGTTCGTGTTCTGTTTCG 59.425 50.000 0.00 0.00 0.00 3.46
3977 4258 2.803956 CGTGTTCTGTTTCGTATGGGTT 59.196 45.455 0.00 0.00 0.00 4.11
4152 4441 4.270325 GGCTGTCTACGCGATTTATCTTTT 59.730 41.667 15.93 0.00 0.00 2.27
4156 4445 2.452006 ACGCGATTTATCTTTTGGCG 57.548 45.000 15.93 0.61 46.67 5.69
4189 4479 2.104451 CCATGCTTGATGCTCTAGTCCT 59.896 50.000 0.22 0.00 43.37 3.85
4203 4493 2.524394 TCCTAGCCCCCTCATCGC 60.524 66.667 0.00 0.00 0.00 4.58
4247 4537 1.429463 GGTCAATCTGCGACGTTTCT 58.571 50.000 0.00 0.00 34.04 2.52
4329 4619 1.153369 CGTTCGGTGATCAGGCCAT 60.153 57.895 5.01 0.00 0.00 4.40
4334 4624 2.182842 GGTGATCAGGCCATCGTGC 61.183 63.158 5.01 0.00 0.00 5.34
4366 4664 7.006509 ACCCTATCTATGCAAGCATATGTTTT 58.993 34.615 14.50 0.00 38.13 2.43
4367 4665 7.175641 ACCCTATCTATGCAAGCATATGTTTTC 59.824 37.037 14.50 0.00 38.13 2.29
4408 4707 1.935873 TGTTTCTGCGAGCTATGCATC 59.064 47.619 13.00 6.03 42.32 3.91
4580 4879 1.675714 CGGCTAACCACTTGCATCTGA 60.676 52.381 0.00 0.00 34.57 3.27
4581 4880 2.436417 GGCTAACCACTTGCATCTGAA 58.564 47.619 0.00 0.00 35.26 3.02
4582 4881 2.162408 GGCTAACCACTTGCATCTGAAC 59.838 50.000 0.00 0.00 35.26 3.18
4583 4882 3.077359 GCTAACCACTTGCATCTGAACT 58.923 45.455 0.00 0.00 0.00 3.01
4584 4883 3.120060 GCTAACCACTTGCATCTGAACTG 60.120 47.826 0.00 0.00 0.00 3.16
4590 4889 2.224475 ACTTGCATCTGAACTGCTCTGT 60.224 45.455 5.01 0.00 40.34 3.41
4631 4930 1.076332 ACGTTACAAAGATCCGCAGC 58.924 50.000 0.00 0.00 0.00 5.25
4648 4947 2.675348 GCAGCTTCGTTGCTCTTATCTT 59.325 45.455 2.25 0.00 41.98 2.40
4655 4954 2.550978 GTTGCTCTTATCTTGCGGCTA 58.449 47.619 0.00 0.00 0.00 3.93
4682 4981 6.563422 TGTTGATAATTTGGCATAGCTTGTC 58.437 36.000 0.00 0.00 0.00 3.18
4691 4990 4.507710 TGGCATAGCTTGTCAACTTCTAG 58.492 43.478 0.00 0.00 36.89 2.43
4749 5048 6.525578 TCGTTGATGTCACCTTACTATCTT 57.474 37.500 0.00 0.00 0.00 2.40
4797 5102 2.464157 AGCAGCTTAGGTCTGTGTTC 57.536 50.000 0.00 0.00 34.21 3.18
4822 5127 9.403583 TCTAAGTTCTAATTTTGTTTCCTGTGT 57.596 29.630 0.00 0.00 0.00 3.72
4855 5164 8.791749 TCCTCTTTTCCTTATGATTTTCCCTAT 58.208 33.333 0.00 0.00 0.00 2.57
4862 5171 9.862149 TTCCTTATGATTTTCCCTATTAGTTCC 57.138 33.333 0.00 0.00 0.00 3.62
4863 5172 9.009675 TCCTTATGATTTTCCCTATTAGTTCCA 57.990 33.333 0.00 0.00 0.00 3.53
4864 5173 9.813826 CCTTATGATTTTCCCTATTAGTTCCAT 57.186 33.333 0.00 0.00 0.00 3.41
4866 5175 6.959639 TGATTTTCCCTATTAGTTCCATGC 57.040 37.500 0.00 0.00 0.00 4.06
4867 5176 6.430864 TGATTTTCCCTATTAGTTCCATGCA 58.569 36.000 0.00 0.00 0.00 3.96
4868 5177 6.321181 TGATTTTCCCTATTAGTTCCATGCAC 59.679 38.462 0.00 0.00 0.00 4.57
4869 5178 4.853468 TTCCCTATTAGTTCCATGCACA 57.147 40.909 0.00 0.00 0.00 4.57
4870 5179 5.387113 TTCCCTATTAGTTCCATGCACAT 57.613 39.130 0.00 0.00 0.00 3.21
4871 5180 6.508030 TTCCCTATTAGTTCCATGCACATA 57.492 37.500 0.00 0.00 0.00 2.29
4872 5181 6.114187 TCCCTATTAGTTCCATGCACATAG 57.886 41.667 0.00 0.00 0.00 2.23
4873 5182 4.697352 CCCTATTAGTTCCATGCACATAGC 59.303 45.833 0.00 0.00 45.96 2.97
4888 5197 6.380111 GCACATAGCACTTTGTTACAAATG 57.620 37.500 11.12 11.97 44.79 2.32
4889 5198 5.164061 GCACATAGCACTTTGTTACAAATGC 60.164 40.000 23.98 23.98 44.79 3.56
4890 5199 5.919707 CACATAGCACTTTGTTACAAATGCA 59.080 36.000 28.44 20.68 35.51 3.96
4891 5200 6.587226 CACATAGCACTTTGTTACAAATGCAT 59.413 34.615 28.44 21.41 35.51 3.96
4892 5201 7.754475 CACATAGCACTTTGTTACAAATGCATA 59.246 33.333 28.44 21.82 35.51 3.14
4893 5202 8.469200 ACATAGCACTTTGTTACAAATGCATAT 58.531 29.630 28.44 22.49 35.51 1.78
4894 5203 8.961092 CATAGCACTTTGTTACAAATGCATATC 58.039 33.333 28.44 12.69 35.51 1.63
4895 5204 6.923012 AGCACTTTGTTACAAATGCATATCA 58.077 32.000 28.44 4.76 35.51 2.15
4896 5205 7.549839 AGCACTTTGTTACAAATGCATATCAT 58.450 30.769 28.44 15.45 35.51 2.45
4897 5206 7.490079 AGCACTTTGTTACAAATGCATATCATG 59.510 33.333 28.44 12.98 35.13 3.07
4927 5236 6.374333 TCAACCAGCAGTCCTATTGAAAATAC 59.626 38.462 0.00 0.00 29.56 1.89
5027 5336 8.599055 TGTCAGATATCGTACGTTACTAGATT 57.401 34.615 16.05 0.00 0.00 2.40
5029 5338 9.315680 GTCAGATATCGTACGTTACTAGATTTG 57.684 37.037 16.05 4.15 0.00 2.32
5120 5430 3.562973 AGACTTGATGTTTCACACAGCTG 59.437 43.478 13.48 13.48 42.76 4.24
5133 5443 2.371841 ACACAGCTGGAACCTTACATGA 59.628 45.455 19.93 0.00 0.00 3.07
5277 5587 7.805071 CCATTTTTCTCTACATGTGTCACTTTC 59.195 37.037 9.11 0.00 0.00 2.62
5287 5597 4.135747 TGTGTCACTTTCTGTCACATGA 57.864 40.909 0.00 0.00 41.99 3.07
5309 5619 8.557864 CATGAAGATATGACAGATGAAAAGTCC 58.442 37.037 0.00 0.00 0.00 3.85
5418 5728 1.373059 GAGGCTAGGGTATGCTGCC 59.627 63.158 0.00 0.00 43.52 4.85
5430 5740 3.866910 GGTATGCTGCCAAACATCATTTG 59.133 43.478 0.00 0.00 36.53 2.32
5463 5773 6.682863 GCTTGTCACGTTATCAATATTGACAC 59.317 38.462 20.19 17.33 42.19 3.67
5472 5782 9.773328 CGTTATCAATATTGACACTGTGAAATT 57.227 29.630 20.19 2.95 40.49 1.82
5669 5979 5.537300 TGATAAGTATGAGGAAGAGGTGC 57.463 43.478 0.00 0.00 0.00 5.01
5823 6136 7.991460 AGGTAAGTTTATCTGCTGGGTAATAAC 59.009 37.037 0.00 0.00 0.00 1.89
5841 6154 8.142551 GGTAATAACTAATAGCTACAGCACTGT 58.857 37.037 8.57 8.57 46.87 3.55
5880 6193 7.795047 TCATGCAGTATTTATCTTCCTTCTCA 58.205 34.615 0.00 0.00 0.00 3.27
6136 6449 4.692625 TGCTAATGTTGAGAGCAAAGAGTC 59.307 41.667 0.00 0.00 43.03 3.36
6155 6468 1.757118 TCGCCTTCTCCTGATAACCAG 59.243 52.381 0.00 0.00 42.55 4.00
6166 6479 5.032846 TCCTGATAACCAGTCTCCAGATTT 58.967 41.667 0.00 0.00 41.33 2.17
6175 6488 4.440880 CAGTCTCCAGATTTAAGGCAGAG 58.559 47.826 0.00 0.00 0.00 3.35
6226 6539 2.698855 TCTCCTGCTAGAACCATTGC 57.301 50.000 0.00 0.00 0.00 3.56
6361 6674 2.920647 GCCAAACTCGGTACAACAATGC 60.921 50.000 0.00 0.00 0.00 3.56
6459 6772 7.514721 TGAAAACAAGGAGGTACAATAGAACT 58.485 34.615 0.00 0.00 0.00 3.01
6605 6918 0.613012 AACTTTCCTGAGCATGCCCC 60.613 55.000 15.66 7.45 0.00 5.80
6628 6941 6.622833 CATGTGGTCATGCATAAATAGTGA 57.377 37.500 0.00 0.00 43.66 3.41
6633 6946 5.239963 TGGTCATGCATAAATAGTGATGCTG 59.760 40.000 13.47 9.18 46.98 4.41
6683 6999 5.530543 CCTCTGCAATTTCCTCTCCTATTTC 59.469 44.000 0.00 0.00 0.00 2.17
6701 7017 8.968969 TCCTATTTCTCTTGTTCTAGTAGTTCC 58.031 37.037 0.00 0.00 0.00 3.62
6944 7261 4.217550 GCAGCTTTGGTCCATGTAGTTAAA 59.782 41.667 0.00 0.00 0.00 1.52
7294 7612 6.429078 TGCTTGACAGGAATTGATATATGCTC 59.571 38.462 0.00 0.00 0.00 4.26
7340 7658 0.885196 TTGTGGCGGCCTTTTATCAC 59.115 50.000 21.46 8.51 0.00 3.06
7695 8014 3.633986 GGGGTTCATGCTCTTATTTCTGG 59.366 47.826 0.00 0.00 0.00 3.86
7780 8099 4.935352 AAAAGACCATGCAGCACTAAAA 57.065 36.364 0.00 0.00 0.00 1.52
7810 8129 3.062099 GCGCGATGTAAATTTGTGAGAGA 59.938 43.478 12.10 0.00 0.00 3.10
7836 8155 8.533657 AGGCTCATCATTTATGATTTTTCACAA 58.466 29.630 2.51 0.00 44.70 3.33
7837 8156 8.814235 GGCTCATCATTTATGATTTTTCACAAG 58.186 33.333 2.51 0.00 44.70 3.16
7838 8157 9.362539 GCTCATCATTTATGATTTTTCACAAGT 57.637 29.630 2.51 0.00 44.70 3.16
7880 8199 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
7881 8200 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
7882 8201 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
7883 8202 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
7884 8203 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
7885 8204 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
7886 8205 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
7887 8206 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
7888 8207 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
7889 8208 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7986 8305 8.988064 TTTGTTTTATTGTTGTTGCTGTTAGA 57.012 26.923 0.00 0.00 0.00 2.10
7987 8306 9.593134 TTTGTTTTATTGTTGTTGCTGTTAGAT 57.407 25.926 0.00 0.00 0.00 1.98
7988 8307 8.572828 TGTTTTATTGTTGTTGCTGTTAGATG 57.427 30.769 0.00 0.00 0.00 2.90
8016 9356 4.901197 TGTGCTCACTTTGGGTCTATTA 57.099 40.909 1.47 0.00 0.00 0.98
8030 9370 5.129815 TGGGTCTATTATACGCAACCTTTCT 59.870 40.000 0.00 0.00 36.92 2.52
8031 9371 6.053650 GGGTCTATTATACGCAACCTTTCTT 58.946 40.000 0.00 0.00 0.00 2.52
8100 9457 0.323629 TTACTACTGCGCCAAGGCTT 59.676 50.000 4.18 0.00 39.32 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 4.777366 TGGCGAGGATATCATGGAGATTTA 59.223 41.667 4.83 0.00 38.19 1.40
67 68 2.825223 TGGCGAGGATATCATGGAGAT 58.175 47.619 4.83 0.00 40.86 2.75
68 69 2.309136 TGGCGAGGATATCATGGAGA 57.691 50.000 4.83 0.00 0.00 3.71
69 70 3.070018 GTTTGGCGAGGATATCATGGAG 58.930 50.000 4.83 0.00 0.00 3.86
71 72 3.131709 AGTTTGGCGAGGATATCATGG 57.868 47.619 4.83 0.00 0.00 3.66
73 74 4.422073 TGAAGTTTGGCGAGGATATCAT 57.578 40.909 4.83 0.00 0.00 2.45
89 117 5.667466 TGGTTTTCTTACGTCTCTTGAAGT 58.333 37.500 0.00 0.00 38.40 3.01
101 129 9.626045 CAATGAGAAAGGTATTGGTTTTCTTAC 57.374 33.333 0.86 0.00 40.27 2.34
110 138 6.037610 GCACTCTACAATGAGAAAGGTATTGG 59.962 42.308 0.00 0.00 36.41 3.16
118 146 7.931407 TCTTTGTAAGCACTCTACAATGAGAAA 59.069 33.333 7.03 0.00 34.86 2.52
119 147 7.441836 TCTTTGTAAGCACTCTACAATGAGAA 58.558 34.615 7.03 0.00 34.86 2.87
122 151 8.445275 TTTTCTTTGTAAGCACTCTACAATGA 57.555 30.769 7.03 7.03 36.64 2.57
183 213 5.352284 AGTTTATAAGCATCCACACTCGAG 58.648 41.667 11.84 11.84 0.00 4.04
194 224 8.980481 AGGTGCTTACATAAGTTTATAAGCAT 57.020 30.769 21.38 10.90 42.23 3.79
290 322 1.203364 AGACCATGAACTCCCTCCACT 60.203 52.381 0.00 0.00 0.00 4.00
291 323 1.280457 AGACCATGAACTCCCTCCAC 58.720 55.000 0.00 0.00 0.00 4.02
292 324 2.044793 AAGACCATGAACTCCCTCCA 57.955 50.000 0.00 0.00 0.00 3.86
307 339 2.484947 CGCCATTTAGGGGTCCTAAGAC 60.485 54.545 6.53 0.00 45.40 3.01
308 340 1.766496 CGCCATTTAGGGGTCCTAAGA 59.234 52.381 6.53 0.57 45.40 2.10
309 341 1.766496 TCGCCATTTAGGGGTCCTAAG 59.234 52.381 6.53 0.00 45.40 2.18
349 381 8.474710 ACGGAGGAAGTATATACTACAACAAT 57.525 34.615 15.74 0.00 34.99 2.71
350 382 7.886629 ACGGAGGAAGTATATACTACAACAA 57.113 36.000 15.74 0.00 34.99 2.83
351 383 7.254898 CGAACGGAGGAAGTATATACTACAACA 60.255 40.741 15.74 0.00 34.99 3.33
352 384 7.074502 CGAACGGAGGAAGTATATACTACAAC 58.925 42.308 15.74 8.26 34.99 3.32
357 389 4.978099 TCCGAACGGAGGAAGTATATACT 58.022 43.478 12.04 9.71 39.76 2.12
367 399 1.402968 CGAGTAATTCCGAACGGAGGA 59.597 52.381 15.34 3.20 46.06 3.71
368 400 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
369 401 2.556534 ACGAGTAATTCCGAACGGAG 57.443 50.000 15.34 5.60 46.06 4.63
370 402 4.433186 TTAACGAGTAATTCCGAACGGA 57.567 40.909 12.04 12.04 43.52 4.69
371 403 4.858692 TCTTTAACGAGTAATTCCGAACGG 59.141 41.667 6.94 6.94 0.00 4.44
372 404 5.997732 TCTTTAACGAGTAATTCCGAACG 57.002 39.130 0.00 0.00 0.00 3.95
373 405 8.437742 TCATTTCTTTAACGAGTAATTCCGAAC 58.562 33.333 0.00 0.00 0.00 3.95
374 406 8.537049 TCATTTCTTTAACGAGTAATTCCGAA 57.463 30.769 0.00 0.00 0.00 4.30
375 407 8.537049 TTCATTTCTTTAACGAGTAATTCCGA 57.463 30.769 0.00 0.00 0.00 4.55
376 408 9.210426 CATTCATTTCTTTAACGAGTAATTCCG 57.790 33.333 0.00 0.00 0.00 4.30
418 450 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
419 451 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
420 452 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
421 453 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
422 454 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
430 462 9.743937 CGAAATTATTTGTCACAAAAATGGATG 57.256 29.630 7.14 0.00 0.00 3.51
431 463 9.703892 TCGAAATTATTTGTCACAAAAATGGAT 57.296 25.926 7.14 0.00 0.00 3.41
432 464 9.534565 TTCGAAATTATTTGTCACAAAAATGGA 57.465 25.926 7.14 5.35 0.00 3.41
433 465 9.579610 GTTCGAAATTATTTGTCACAAAAATGG 57.420 29.630 7.14 3.48 0.00 3.16
434 466 9.288845 CGTTCGAAATTATTTGTCACAAAAATG 57.711 29.630 7.14 0.00 0.00 2.32
435 467 8.484008 CCGTTCGAAATTATTTGTCACAAAAAT 58.516 29.630 7.14 6.03 0.00 1.82
436 468 7.701078 TCCGTTCGAAATTATTTGTCACAAAAA 59.299 29.630 7.14 3.92 0.00 1.94
437 469 7.194278 TCCGTTCGAAATTATTTGTCACAAAA 58.806 30.769 7.14 0.00 0.00 2.44
438 470 6.726230 TCCGTTCGAAATTATTTGTCACAAA 58.274 32.000 5.18 5.18 0.00 2.83
439 471 6.301687 TCCGTTCGAAATTATTTGTCACAA 57.698 33.333 0.00 0.00 0.00 3.33
440 472 5.106869 CCTCCGTTCGAAATTATTTGTCACA 60.107 40.000 0.00 0.00 0.00 3.58
441 473 5.321516 CCTCCGTTCGAAATTATTTGTCAC 58.678 41.667 0.00 0.00 0.00 3.67
442 474 4.393680 CCCTCCGTTCGAAATTATTTGTCA 59.606 41.667 0.00 0.00 0.00 3.58
443 475 4.632688 TCCCTCCGTTCGAAATTATTTGTC 59.367 41.667 0.00 0.00 0.00 3.18
444 476 4.581868 TCCCTCCGTTCGAAATTATTTGT 58.418 39.130 0.00 0.00 0.00 2.83
445 477 4.634443 ACTCCCTCCGTTCGAAATTATTTG 59.366 41.667 0.00 0.00 0.00 2.32
446 478 4.840271 ACTCCCTCCGTTCGAAATTATTT 58.160 39.130 0.00 0.00 0.00 1.40
447 479 4.482952 ACTCCCTCCGTTCGAAATTATT 57.517 40.909 0.00 0.00 0.00 1.40
448 480 4.498682 CGTACTCCCTCCGTTCGAAATTAT 60.499 45.833 0.00 0.00 0.00 1.28
449 481 3.181497 CGTACTCCCTCCGTTCGAAATTA 60.181 47.826 0.00 0.00 0.00 1.40
450 482 2.416431 CGTACTCCCTCCGTTCGAAATT 60.416 50.000 0.00 0.00 0.00 1.82
451 483 1.133790 CGTACTCCCTCCGTTCGAAAT 59.866 52.381 0.00 0.00 0.00 2.17
452 484 0.523072 CGTACTCCCTCCGTTCGAAA 59.477 55.000 0.00 0.00 0.00 3.46
453 485 0.606401 ACGTACTCCCTCCGTTCGAA 60.606 55.000 0.00 0.00 0.00 3.71
454 486 0.249120 TACGTACTCCCTCCGTTCGA 59.751 55.000 0.00 0.00 36.12 3.71
455 487 1.303309 ATACGTACTCCCTCCGTTCG 58.697 55.000 0.00 0.00 36.12 3.95
456 488 3.790152 AAATACGTACTCCCTCCGTTC 57.210 47.619 0.00 0.00 36.12 3.95
457 489 5.659440 TTTAAATACGTACTCCCTCCGTT 57.341 39.130 0.00 0.00 36.12 4.44
458 490 5.047377 TGTTTTAAATACGTACTCCCTCCGT 60.047 40.000 0.00 0.00 38.53 4.69
459 491 5.289434 GTGTTTTAAATACGTACTCCCTCCG 59.711 44.000 0.00 0.00 0.00 4.63
460 492 6.401394 AGTGTTTTAAATACGTACTCCCTCC 58.599 40.000 0.00 0.00 0.00 4.30
461 493 8.028938 TGTAGTGTTTTAAATACGTACTCCCTC 58.971 37.037 0.00 0.00 0.00 4.30
462 494 7.895759 TGTAGTGTTTTAAATACGTACTCCCT 58.104 34.615 0.00 0.00 0.00 4.20
463 495 8.532977 TTGTAGTGTTTTAAATACGTACTCCC 57.467 34.615 0.00 0.00 0.00 4.30
482 514 5.065988 CGCAGCCTAACCAATAATTTGTAGT 59.934 40.000 0.00 0.00 0.00 2.73
506 540 3.623510 CGAATTCTTCTAGGGTTTCAGGC 59.376 47.826 3.52 0.00 0.00 4.85
539 573 1.810151 GCTCCAGTTTATCAACGGCAA 59.190 47.619 0.00 0.00 38.03 4.52
549 583 5.303589 ACTTGTGTAGTGTAGCTCCAGTTTA 59.696 40.000 0.00 0.00 35.19 2.01
552 586 3.231818 ACTTGTGTAGTGTAGCTCCAGT 58.768 45.455 0.00 0.00 35.19 4.00
553 587 3.944055 ACTTGTGTAGTGTAGCTCCAG 57.056 47.619 0.00 0.00 35.19 3.86
554 588 3.895656 AGAACTTGTGTAGTGTAGCTCCA 59.104 43.478 0.00 0.00 37.12 3.86
555 589 4.022242 TGAGAACTTGTGTAGTGTAGCTCC 60.022 45.833 0.00 0.00 37.12 4.70
556 590 5.122512 TGAGAACTTGTGTAGTGTAGCTC 57.877 43.478 0.00 0.00 37.12 4.09
557 591 5.290386 GTTGAGAACTTGTGTAGTGTAGCT 58.710 41.667 0.00 0.00 37.12 3.32
558 592 4.148348 CGTTGAGAACTTGTGTAGTGTAGC 59.852 45.833 0.00 0.00 37.12 3.58
594 628 2.266554 CTCGTGATTCAGGAGTTCTGC 58.733 52.381 22.40 0.00 43.06 4.26
618 652 4.208686 CGGCTAGTCCTCGGGCAC 62.209 72.222 0.00 0.00 0.00 5.01
736 790 1.407299 CCTGGCCAGATTTGACGATCA 60.407 52.381 34.91 0.00 0.00 2.92
865 927 4.329545 GTGGAACTGCGGCAGGGA 62.330 66.667 31.38 11.11 35.51 4.20
1370 1454 4.806481 CGCCGTCGTCATCGTCGT 62.806 66.667 6.54 0.00 44.09 4.34
1391 1481 1.153349 GCAGGGAAGGCTTACTCGG 60.153 63.158 9.79 1.78 0.00 4.63
1392 1482 1.153349 GGCAGGGAAGGCTTACTCG 60.153 63.158 9.79 1.81 0.00 4.18
1415 1505 0.325203 GAGGAGAAGAGAGCAGGGGT 60.325 60.000 0.00 0.00 0.00 4.95
1477 1585 1.941734 CGAGAGATGAAGCGGCGAC 60.942 63.158 12.98 1.23 0.00 5.19
1571 1692 4.208686 GACCAGCTAGACGGGCCG 62.209 72.222 27.06 27.06 37.06 6.13
1661 1798 1.856265 GCCCAAAGACAACAGAGCGG 61.856 60.000 0.00 0.00 0.00 5.52
1808 1967 0.764271 TGACAGCAGTGGTCATGGAA 59.236 50.000 0.00 0.00 40.16 3.53
1879 2042 0.804989 GGTCTTGCATTCAGGAACGG 59.195 55.000 0.00 0.00 29.69 4.44
1909 2078 4.780815 TCAACAAATCAGTGACTTGGAGT 58.219 39.130 17.84 1.02 0.00 3.85
1912 2081 6.073276 TCGTAATCAACAAATCAGTGACTTGG 60.073 38.462 17.84 2.18 0.00 3.61
1913 2082 6.887368 TCGTAATCAACAAATCAGTGACTTG 58.113 36.000 12.58 12.58 0.00 3.16
2035 2212 4.181309 GCTAGCTAACTGGCTATTCGAT 57.819 45.455 7.70 0.00 46.27 3.59
2062 2239 2.224257 GGATAGAGCTGCAGAGGGAAAG 60.224 54.545 20.43 0.00 0.00 2.62
2152 2330 2.984562 TCTAGTTGCGAATTGGCATCA 58.015 42.857 20.98 4.74 43.52 3.07
2157 2335 4.865776 TGGTTTTTCTAGTTGCGAATTGG 58.134 39.130 0.00 0.00 0.00 3.16
2178 2356 5.023920 GTGAAGTGACAACGATATGCATTG 58.976 41.667 3.54 0.00 0.00 2.82
2185 2363 3.978855 CGACAAGTGAAGTGACAACGATA 59.021 43.478 0.00 0.00 0.00 2.92
2237 2415 2.289694 GGCTCAAGAAGACTGCAACCTA 60.290 50.000 0.00 0.00 0.00 3.08
2280 2458 1.541233 CCTGTGGTGAACTCTGGTGAC 60.541 57.143 0.00 0.00 0.00 3.67
2389 2567 5.863397 CGTCTAGTCTAGGTATAAGAGGACG 59.137 48.000 7.05 0.00 36.41 4.79
2407 2585 3.056107 TGGGATGGAAGAAACACGTCTAG 60.056 47.826 0.00 0.00 0.00 2.43
2444 2622 4.938832 TCCTCGCTAATTCCGAAATGAAAA 59.061 37.500 3.24 0.00 33.92 2.29
2448 2626 2.802816 CCTCCTCGCTAATTCCGAAATG 59.197 50.000 3.24 0.00 33.92 2.32
2449 2627 2.698797 TCCTCCTCGCTAATTCCGAAAT 59.301 45.455 3.24 0.00 33.92 2.17
2450 2628 2.104967 TCCTCCTCGCTAATTCCGAAA 58.895 47.619 3.24 0.00 33.92 3.46
2451 2629 1.771565 TCCTCCTCGCTAATTCCGAA 58.228 50.000 3.24 0.00 33.92 4.30
2453 2631 2.202566 GTTTCCTCCTCGCTAATTCCG 58.797 52.381 0.00 0.00 0.00 4.30
2463 2643 3.203716 AGACACAAAACGTTTCCTCCTC 58.796 45.455 15.01 5.87 0.00 3.71
2517 2700 5.994250 AGATGGAAGCAAGCAACTTCTATA 58.006 37.500 10.69 2.09 43.05 1.31
2555 2738 4.775236 AGCAGCTTCTATCGAAAAATCCT 58.225 39.130 0.00 0.00 0.00 3.24
2556 2739 5.269313 CAAGCAGCTTCTATCGAAAAATCC 58.731 41.667 4.07 0.00 0.00 3.01
2557 2740 4.732442 GCAAGCAGCTTCTATCGAAAAATC 59.268 41.667 4.07 0.00 41.15 2.17
2558 2741 4.666237 GCAAGCAGCTTCTATCGAAAAAT 58.334 39.130 4.07 0.00 41.15 1.82
2559 2742 4.083581 GCAAGCAGCTTCTATCGAAAAA 57.916 40.909 4.07 0.00 41.15 1.94
2560 2743 3.747099 GCAAGCAGCTTCTATCGAAAA 57.253 42.857 4.07 0.00 41.15 2.29
2572 2755 1.139095 GCAGATGGAAGCAAGCAGC 59.861 57.895 0.00 0.00 46.19 5.25
2573 2756 1.303799 ACGCAGATGGAAGCAAGCAG 61.304 55.000 0.00 0.00 0.00 4.24
2574 2757 0.036483 TACGCAGATGGAAGCAAGCA 60.036 50.000 0.00 0.00 0.00 3.91
2575 2758 1.086696 TTACGCAGATGGAAGCAAGC 58.913 50.000 0.00 0.00 0.00 4.01
2576 2759 3.829886 TTTTACGCAGATGGAAGCAAG 57.170 42.857 0.00 0.00 0.00 4.01
2577 2760 4.782019 AATTTTACGCAGATGGAAGCAA 57.218 36.364 0.00 0.00 0.00 3.91
2578 2761 4.335315 CCTAATTTTACGCAGATGGAAGCA 59.665 41.667 0.00 0.00 0.00 3.91
2579 2762 4.335594 ACCTAATTTTACGCAGATGGAAGC 59.664 41.667 0.00 0.00 0.00 3.86
2580 2763 6.316390 AGAACCTAATTTTACGCAGATGGAAG 59.684 38.462 0.00 0.00 0.00 3.46
2581 2764 6.177610 AGAACCTAATTTTACGCAGATGGAA 58.822 36.000 0.00 0.00 0.00 3.53
2582 2765 5.741011 AGAACCTAATTTTACGCAGATGGA 58.259 37.500 0.00 0.00 0.00 3.41
2583 2766 6.761714 AGTAGAACCTAATTTTACGCAGATGG 59.238 38.462 0.00 0.00 33.94 3.51
2584 2767 7.772332 AGTAGAACCTAATTTTACGCAGATG 57.228 36.000 0.00 0.00 33.94 2.90
2586 2769 9.956720 GTATAGTAGAACCTAATTTTACGCAGA 57.043 33.333 0.00 0.00 33.94 4.26
2587 2770 9.962783 AGTATAGTAGAACCTAATTTTACGCAG 57.037 33.333 0.00 0.00 33.94 5.18
2588 2771 9.740239 CAGTATAGTAGAACCTAATTTTACGCA 57.260 33.333 0.00 0.00 33.94 5.24
2589 2772 8.697960 GCAGTATAGTAGAACCTAATTTTACGC 58.302 37.037 0.00 0.00 33.94 4.42
2590 2773 9.740239 TGCAGTATAGTAGAACCTAATTTTACG 57.260 33.333 0.00 0.00 33.94 3.18
2595 2778 9.988815 CTTCATGCAGTATAGTAGAACCTAATT 57.011 33.333 0.00 0.00 0.00 1.40
2596 2779 9.148879 ACTTCATGCAGTATAGTAGAACCTAAT 57.851 33.333 0.00 0.00 0.00 1.73
2597 2780 8.414003 CACTTCATGCAGTATAGTAGAACCTAA 58.586 37.037 0.00 0.00 0.00 2.69
2598 2781 7.941919 CACTTCATGCAGTATAGTAGAACCTA 58.058 38.462 0.00 0.00 0.00 3.08
2599 2782 6.810911 CACTTCATGCAGTATAGTAGAACCT 58.189 40.000 0.00 0.00 0.00 3.50
2637 2830 5.460646 CGGTGAAATAACAAGATGCAGTTT 58.539 37.500 0.00 0.00 0.00 2.66
2693 2898 1.566018 GCTACAAGTCGCCGCAAGTT 61.566 55.000 0.00 0.00 0.00 2.66
2694 2899 2.027625 GCTACAAGTCGCCGCAAGT 61.028 57.895 0.00 0.00 0.00 3.16
2697 2902 0.174845 ATTAGCTACAAGTCGCCGCA 59.825 50.000 0.00 0.00 0.00 5.69
2698 2903 1.004927 CAATTAGCTACAAGTCGCCGC 60.005 52.381 0.00 0.00 0.00 6.53
2700 2905 1.004927 CGCAATTAGCTACAAGTCGCC 60.005 52.381 0.00 0.00 42.61 5.54
2702 2907 1.004927 GCCGCAATTAGCTACAAGTCG 60.005 52.381 0.00 0.00 42.61 4.18
2703 2908 1.004927 CGCCGCAATTAGCTACAAGTC 60.005 52.381 0.00 0.00 42.61 3.01
2704 2909 1.006832 CGCCGCAATTAGCTACAAGT 58.993 50.000 0.00 0.00 42.61 3.16
2706 2911 1.003851 GTCGCCGCAATTAGCTACAA 58.996 50.000 0.00 0.00 42.61 2.41
2719 2924 1.901650 GCAGAGGAAACAAGTCGCCG 61.902 60.000 0.00 0.00 0.00 6.46
2741 2946 4.083643 AGTGCTGTCAAACTTTGATCGATG 60.084 41.667 0.54 0.00 42.47 3.84
2788 2993 0.545071 AAAAGGCATCCAACAGGGGG 60.545 55.000 0.00 0.00 37.22 5.40
2808 3044 4.038763 TCAGTTCGTAGAGCAAAGGAGAAA 59.961 41.667 0.00 0.00 41.37 2.52
2810 3046 3.154710 TCAGTTCGTAGAGCAAAGGAGA 58.845 45.455 0.00 0.00 41.37 3.71
2811 3047 3.577649 TCAGTTCGTAGAGCAAAGGAG 57.422 47.619 0.00 0.00 41.37 3.69
2812 3048 3.914312 CTTCAGTTCGTAGAGCAAAGGA 58.086 45.455 0.00 0.00 41.37 3.36
2814 3050 3.675698 GTCCTTCAGTTCGTAGAGCAAAG 59.324 47.826 0.00 0.00 41.37 2.77
2866 3104 4.507756 GGGAATCAAACAAACAAGCTGAAC 59.492 41.667 0.00 0.00 0.00 3.18
2880 3118 4.118480 CGATCGGCGGGAATCAAA 57.882 55.556 7.38 0.00 36.03 2.69
2934 3172 2.193248 GTGCCATACTGCCTCCCC 59.807 66.667 0.00 0.00 0.00 4.81
2935 3173 2.193248 GGTGCCATACTGCCTCCC 59.807 66.667 0.00 0.00 0.00 4.30
2936 3174 1.153086 CTGGTGCCATACTGCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
3042 3281 4.947147 TTTTGCGCACCCGGCTCT 62.947 61.111 11.12 0.00 41.67 4.09
3043 3282 3.683587 GATTTTGCGCACCCGGCTC 62.684 63.158 11.12 0.00 41.67 4.70
3044 3283 3.747976 GATTTTGCGCACCCGGCT 61.748 61.111 11.12 0.00 41.67 5.52
3046 3285 3.427425 TCGATTTTGCGCACCCGG 61.427 61.111 11.12 0.00 34.32 5.73
3047 3286 2.202298 GTCGATTTTGCGCACCCG 60.202 61.111 11.12 11.66 37.57 5.28
3048 3287 2.202298 CGTCGATTTTGCGCACCC 60.202 61.111 11.12 0.00 0.00 4.61
3049 3288 1.509162 GTCGTCGATTTTGCGCACC 60.509 57.895 11.12 0.00 0.00 5.01
3050 3289 1.853192 CGTCGTCGATTTTGCGCAC 60.853 57.895 11.12 0.00 39.71 5.34
3054 3293 4.442705 CATATTACCGTCGTCGATTTTGC 58.557 43.478 2.98 0.00 39.71 3.68
3058 3297 2.295349 AGCCATATTACCGTCGTCGATT 59.705 45.455 2.98 0.00 39.71 3.34
3084 3323 0.107456 TCCCGAGCTACTACTACCCG 59.893 60.000 0.00 0.00 0.00 5.28
3125 3364 2.766828 AGGGTGTTCCTGACATAGCTAC 59.233 50.000 0.00 0.00 46.07 3.58
3143 3382 1.006832 CGCTCGATTTGGTGTAAGGG 58.993 55.000 0.00 0.00 0.00 3.95
3150 3389 2.114670 CCATGCCGCTCGATTTGGT 61.115 57.895 0.00 0.00 0.00 3.67
3315 3559 2.203625 TGTTTGGCCTGGGGAAGC 60.204 61.111 3.32 0.00 0.00 3.86
3399 3652 4.075793 TCGTGGAGGGGGAGGGAG 62.076 72.222 0.00 0.00 0.00 4.30
3400 3653 4.393778 GTCGTGGAGGGGGAGGGA 62.394 72.222 0.00 0.00 0.00 4.20
3403 3656 4.753662 TCGGTCGTGGAGGGGGAG 62.754 72.222 0.00 0.00 0.00 4.30
3404 3657 4.753662 CTCGGTCGTGGAGGGGGA 62.754 72.222 0.00 0.00 0.00 4.81
3407 3660 4.436998 GTGCTCGGTCGTGGAGGG 62.437 72.222 0.00 0.00 32.10 4.30
3408 3661 3.220999 TTGTGCTCGGTCGTGGAGG 62.221 63.158 0.00 0.00 32.10 4.30
3409 3662 2.022129 GTTGTGCTCGGTCGTGGAG 61.022 63.158 0.00 0.00 34.62 3.86
3410 3663 2.028484 GTTGTGCTCGGTCGTGGA 59.972 61.111 0.00 0.00 0.00 4.02
3411 3664 3.403057 CGTTGTGCTCGGTCGTGG 61.403 66.667 0.00 0.00 0.00 4.94
3432 3690 0.475475 ATGGATGGATGGATGCGTGT 59.525 50.000 0.00 0.00 0.00 4.49
3454 3712 5.889853 AGGACCGGAAAATAAATAAGGAACC 59.110 40.000 9.46 0.00 0.00 3.62
3690 3962 1.002624 GGTTTGGAGGACGATGGCA 60.003 57.895 0.00 0.00 0.00 4.92
3875 4156 1.750930 CCTGCCAGCCAGATACGAT 59.249 57.895 0.00 0.00 44.64 3.73
3876 4157 3.094062 GCCTGCCAGCCAGATACGA 62.094 63.158 0.00 0.00 44.64 3.43
3877 4158 2.590007 GCCTGCCAGCCAGATACG 60.590 66.667 0.00 0.00 44.64 3.06
3878 4159 1.525535 CTGCCTGCCAGCCAGATAC 60.526 63.158 0.00 0.00 44.64 2.24
3879 4160 2.749584 CCTGCCTGCCAGCCAGATA 61.750 63.158 3.89 0.00 44.64 1.98
3920 4201 4.720902 TCACACGGGGGCATGCAG 62.721 66.667 21.36 9.95 0.00 4.41
3921 4202 2.203549 TATTCACACGGGGGCATGCA 62.204 55.000 21.36 0.00 0.00 3.96
3922 4203 0.823356 ATATTCACACGGGGGCATGC 60.823 55.000 9.90 9.90 0.00 4.06
3955 4236 2.036217 ACCCATACGAAACAGAACACGA 59.964 45.455 0.00 0.00 0.00 4.35
3969 4250 1.676006 CCGAATCTGCCAAACCCATAC 59.324 52.381 0.00 0.00 0.00 2.39
4189 4479 2.217038 GGATGCGATGAGGGGGCTA 61.217 63.158 0.00 0.00 0.00 3.93
4203 4493 1.000896 GGTGGGTGGGAACAGGATG 60.001 63.158 0.00 0.00 44.46 3.51
4247 4537 2.847234 AGACCACCAGTTCCGGCA 60.847 61.111 0.00 0.00 0.00 5.69
4283 4573 0.039978 ACGATATTCGCCGCTCTGAG 60.040 55.000 0.00 0.00 45.12 3.35
4329 4619 0.596577 GATAGGGTAGCGATGCACGA 59.403 55.000 11.94 0.00 45.77 4.35
4334 4624 4.428209 CTTGCATAGATAGGGTAGCGATG 58.572 47.826 0.00 0.00 31.65 3.84
4366 4664 4.040461 CAGGAAGGAAGACTGTTAGTTGGA 59.960 45.833 0.00 0.00 0.00 3.53
4367 4665 4.202367 ACAGGAAGGAAGACTGTTAGTTGG 60.202 45.833 0.00 0.00 42.38 3.77
4475 4774 5.864474 CGAATACTATTCCAAGGAATCTCCG 59.136 44.000 17.14 9.96 43.04 4.63
4580 4879 2.205074 CACGAGACAAACAGAGCAGTT 58.795 47.619 0.00 0.00 0.00 3.16
4581 4880 1.539065 CCACGAGACAAACAGAGCAGT 60.539 52.381 0.00 0.00 0.00 4.40
4582 4881 1.143305 CCACGAGACAAACAGAGCAG 58.857 55.000 0.00 0.00 0.00 4.24
4583 4882 0.464036 ACCACGAGACAAACAGAGCA 59.536 50.000 0.00 0.00 0.00 4.26
4584 4883 1.583054 AACCACGAGACAAACAGAGC 58.417 50.000 0.00 0.00 0.00 4.09
4608 4907 3.651206 TGCGGATCTTTGTAACGTACAA 58.349 40.909 0.00 0.00 46.13 2.41
4618 4917 0.798776 AACGAAGCTGCGGATCTTTG 59.201 50.000 20.52 6.24 35.12 2.77
4621 4920 2.103042 GCAACGAAGCTGCGGATCT 61.103 57.895 20.52 0.00 40.73 2.75
4631 4930 2.029728 CCGCAAGATAAGAGCAACGAAG 59.970 50.000 0.00 0.00 43.02 3.79
4648 4947 5.335583 GCCAAATTATCAACATATAGCCGCA 60.336 40.000 0.00 0.00 0.00 5.69
4655 4954 8.863086 ACAAGCTATGCCAAATTATCAACATAT 58.137 29.630 0.00 0.00 0.00 1.78
4691 4990 4.855531 ACAGCTTAACGGACAATTTCAAC 58.144 39.130 0.00 0.00 0.00 3.18
4703 5002 3.694535 ATCGTCTAGGACAGCTTAACG 57.305 47.619 0.00 0.00 32.09 3.18
4707 5006 3.512680 CGAAAATCGTCTAGGACAGCTT 58.487 45.455 0.00 0.00 34.72 3.74
4736 5035 7.324178 AGAACAGCTAACAAGATAGTAAGGTG 58.676 38.462 0.00 0.00 38.18 4.00
4817 5122 4.282195 AGGAAAAGAGGAGTCTGTACACAG 59.718 45.833 2.84 2.84 45.08 3.66
4822 5127 7.979786 ATCATAAGGAAAAGAGGAGTCTGTA 57.020 36.000 0.00 0.00 31.37 2.74
4823 5128 6.882768 ATCATAAGGAAAAGAGGAGTCTGT 57.117 37.500 0.00 0.00 31.37 3.41
4865 5174 5.164061 GCATTTGTAACAAAGTGCTATGTGC 60.164 40.000 11.89 3.08 39.09 4.57
4866 5175 5.919707 TGCATTTGTAACAAAGTGCTATGTG 59.080 36.000 16.95 1.28 41.76 3.21
4867 5176 6.083098 TGCATTTGTAACAAAGTGCTATGT 57.917 33.333 16.95 0.00 41.76 2.29
4868 5177 8.861033 ATATGCATTTGTAACAAAGTGCTATG 57.139 30.769 3.54 2.43 41.76 2.23
4869 5178 8.685427 TGATATGCATTTGTAACAAAGTGCTAT 58.315 29.630 3.54 13.15 41.76 2.97
4870 5179 8.049655 TGATATGCATTTGTAACAAAGTGCTA 57.950 30.769 3.54 10.50 41.76 3.49
4871 5180 6.923012 TGATATGCATTTGTAACAAAGTGCT 58.077 32.000 3.54 9.29 41.76 4.40
4872 5181 7.614908 CATGATATGCATTTGTAACAAAGTGC 58.385 34.615 3.54 12.13 41.64 4.40
4889 5198 3.881089 TGCTGGTTGAAGAGCATGATATG 59.119 43.478 0.00 0.00 40.30 1.78
4890 5199 4.135306 CTGCTGGTTGAAGAGCATGATAT 58.865 43.478 0.00 0.00 44.08 1.63
4891 5200 3.054875 ACTGCTGGTTGAAGAGCATGATA 60.055 43.478 0.00 0.00 44.08 2.15
4892 5201 2.290768 ACTGCTGGTTGAAGAGCATGAT 60.291 45.455 0.00 0.00 44.08 2.45
4893 5202 1.072806 ACTGCTGGTTGAAGAGCATGA 59.927 47.619 0.00 0.00 44.08 3.07
4894 5203 1.467734 GACTGCTGGTTGAAGAGCATG 59.532 52.381 0.00 0.00 44.08 4.06
4895 5204 1.612726 GGACTGCTGGTTGAAGAGCAT 60.613 52.381 0.00 0.00 44.08 3.79
4896 5205 0.250467 GGACTGCTGGTTGAAGAGCA 60.250 55.000 0.00 0.00 42.94 4.26
4897 5206 0.036022 AGGACTGCTGGTTGAAGAGC 59.964 55.000 0.00 0.00 35.65 4.09
4898 5207 3.902881 ATAGGACTGCTGGTTGAAGAG 57.097 47.619 0.00 0.00 0.00 2.85
4899 5208 3.582647 TCAATAGGACTGCTGGTTGAAGA 59.417 43.478 0.00 0.00 0.00 2.87
4900 5209 3.942829 TCAATAGGACTGCTGGTTGAAG 58.057 45.455 0.00 0.00 0.00 3.02
4901 5210 4.365514 TTCAATAGGACTGCTGGTTGAA 57.634 40.909 8.10 8.10 34.35 2.69
4902 5211 4.365514 TTTCAATAGGACTGCTGGTTGA 57.634 40.909 0.00 0.00 0.00 3.18
4903 5212 5.649782 ATTTTCAATAGGACTGCTGGTTG 57.350 39.130 0.00 0.00 0.00 3.77
4904 5213 6.151144 GTGTATTTTCAATAGGACTGCTGGTT 59.849 38.462 0.00 0.00 0.00 3.67
4905 5214 5.648092 GTGTATTTTCAATAGGACTGCTGGT 59.352 40.000 0.00 0.00 0.00 4.00
4906 5215 5.647658 TGTGTATTTTCAATAGGACTGCTGG 59.352 40.000 0.00 0.00 0.00 4.85
4927 5236 7.972277 GCTCCATATAAATTTCCATAGCATGTG 59.028 37.037 0.00 0.00 0.00 3.21
5006 5315 9.661187 CAACAAATCTAGTAACGTACGATATCT 57.339 33.333 24.41 15.60 0.00 1.98
5017 5326 6.969828 AGCAGTAGCAACAAATCTAGTAAC 57.030 37.500 0.00 0.00 45.49 2.50
5023 5332 6.824305 ACATAAAGCAGTAGCAACAAATCT 57.176 33.333 0.00 0.00 45.49 2.40
5027 5336 6.039270 AGTTCAACATAAAGCAGTAGCAACAA 59.961 34.615 0.00 0.00 45.49 2.83
5029 5338 6.002062 AGTTCAACATAAAGCAGTAGCAAC 57.998 37.500 0.00 0.00 45.49 4.17
5064 5373 9.511272 CATCTATCAACCAAAATGATCCTGATA 57.489 33.333 0.00 0.00 38.44 2.15
5067 5376 6.264744 AGCATCTATCAACCAAAATGATCCTG 59.735 38.462 0.00 0.00 38.44 3.86
5068 5377 6.371278 AGCATCTATCAACCAAAATGATCCT 58.629 36.000 0.00 0.00 38.44 3.24
5069 5378 6.645790 AGCATCTATCAACCAAAATGATCC 57.354 37.500 0.00 0.00 38.44 3.36
5287 5597 6.878317 TCGGACTTTTCATCTGTCATATCTT 58.122 36.000 0.00 0.00 32.84 2.40
5309 5619 7.115378 GGATAATGCCTGCAAATTAAAGAATCG 59.885 37.037 0.00 0.00 0.00 3.34
5418 5728 6.919662 ACAAGCTTGTAGACAAATGATGTTTG 59.080 34.615 30.25 0.00 40.38 2.93
5430 5740 4.921515 TGATAACGTGACAAGCTTGTAGAC 59.078 41.667 31.20 26.22 42.43 2.59
5497 5807 9.015367 TCAAACGAGGAATGGTTTATTTTATGA 57.985 29.630 0.00 0.00 34.79 2.15
5656 5966 2.604912 TAGACAGCACCTCTTCCTCA 57.395 50.000 0.00 0.00 0.00 3.86
5669 5979 7.525688 AATGTTGACGATGTAACATAGACAG 57.474 36.000 0.00 0.00 44.32 3.51
5698 6008 7.354312 AGAGCTAAATGGGGCTAAATAAGAAA 58.646 34.615 0.00 0.00 39.05 2.52
5710 6023 3.019564 CCACAAGAAGAGCTAAATGGGG 58.980 50.000 0.00 0.00 0.00 4.96
5823 6136 5.869344 TGAAACACAGTGCTGTAGCTATTAG 59.131 40.000 4.37 0.00 42.83 1.73
6001 6314 3.550842 CCTGTACTTCCTTGCAAAAGCAC 60.551 47.826 10.19 8.58 0.00 4.40
6136 6449 2.231215 CTGGTTATCAGGAGAAGGCG 57.769 55.000 0.00 0.00 39.76 5.52
6155 6468 4.744795 TCTCTGCCTTAAATCTGGAGAC 57.255 45.455 0.00 0.00 0.00 3.36
6166 6479 6.295916 CCTTTTTCTACCTCTTCTCTGCCTTA 60.296 42.308 0.00 0.00 0.00 2.69
6175 6488 2.750166 GCAGGCCTTTTTCTACCTCTTC 59.250 50.000 0.00 0.00 0.00 2.87
6226 6539 1.135139 CAGATCCGTGGTCACTACTGG 59.865 57.143 0.00 0.00 0.00 4.00
6361 6674 1.654220 CTGCCGTTTGTTCCACCAG 59.346 57.895 0.00 0.00 0.00 4.00
6543 6856 1.830477 TGTCCCTTTTGCAACAGCTTT 59.170 42.857 7.10 0.00 0.00 3.51
6628 6941 2.029623 CTATGCAGAAAAGGCCAGCAT 58.970 47.619 5.01 12.69 46.53 3.79
6633 6946 3.251972 GCTCATACTATGCAGAAAAGGCC 59.748 47.826 0.00 0.00 0.00 5.19
6683 6999 4.156190 TGAGCGGAACTACTAGAACAAGAG 59.844 45.833 0.00 0.00 0.00 2.85
6701 7017 5.464722 AGTTTAATGCAGATCTACATGAGCG 59.535 40.000 9.25 0.00 35.99 5.03
6944 7261 6.477360 ACGAAACGCTTTTGGTTATTTGATTT 59.523 30.769 0.00 0.00 30.07 2.17
7262 7580 3.587797 ATTCCTGTCAAGCAGCAATTG 57.412 42.857 0.00 0.00 43.71 2.32
7269 7587 6.301486 AGCATATATCAATTCCTGTCAAGCA 58.699 36.000 0.00 0.00 0.00 3.91
7294 7612 2.029838 ATCTAGCCTTGGCGTTTCAG 57.970 50.000 5.95 0.84 0.00 3.02
7340 7658 5.391310 GCTGTGATCCACAAACTGATAACAG 60.391 44.000 11.14 11.14 46.62 3.16
7597 7915 3.640029 CTCCCAATTTTCCATGATCCCAG 59.360 47.826 0.00 0.00 0.00 4.45
7672 7991 4.272489 CAGAAATAAGAGCATGAACCCCA 58.728 43.478 0.00 0.00 0.00 4.96
7780 8099 5.176590 ACAAATTTACATCGCGCATGTTTTT 59.823 32.000 23.76 18.45 43.89 1.94
7854 8173 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
7855 8174 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
7856 8175 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
7857 8176 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
7858 8177 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
7859 8178 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
7860 8179 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
7861 8180 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
7862 8181 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
7863 8182 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
7864 8183 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
7865 8184 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
7866 8185 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
7867 8186 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7868 8187 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7869 8188 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7870 8189 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7871 8190 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7872 8191 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7873 8192 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
7874 8193 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
7875 8194 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
7876 8195 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
7877 8196 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
7878 8197 2.024655 ACATACTACTCCCTCCGTTCCA 60.025 50.000 0.00 0.00 0.00 3.53
7879 8198 2.361438 CACATACTACTCCCTCCGTTCC 59.639 54.545 0.00 0.00 0.00 3.62
7880 8199 3.022406 ACACATACTACTCCCTCCGTTC 58.978 50.000 0.00 0.00 0.00 3.95
7881 8200 3.097342 ACACATACTACTCCCTCCGTT 57.903 47.619 0.00 0.00 0.00 4.44
7882 8201 2.822707 ACACATACTACTCCCTCCGT 57.177 50.000 0.00 0.00 0.00 4.69
7883 8202 4.022242 CCATAACACATACTACTCCCTCCG 60.022 50.000 0.00 0.00 0.00 4.63
7884 8203 5.145564 TCCATAACACATACTACTCCCTCC 58.854 45.833 0.00 0.00 0.00 4.30
7885 8204 5.834204 ACTCCATAACACATACTACTCCCTC 59.166 44.000 0.00 0.00 0.00 4.30
7886 8205 5.778542 ACTCCATAACACATACTACTCCCT 58.221 41.667 0.00 0.00 0.00 4.20
7887 8206 6.208994 CCTACTCCATAACACATACTACTCCC 59.791 46.154 0.00 0.00 0.00 4.30
7888 8207 6.776603 ACCTACTCCATAACACATACTACTCC 59.223 42.308 0.00 0.00 0.00 3.85
7889 8208 7.820578 ACCTACTCCATAACACATACTACTC 57.179 40.000 0.00 0.00 0.00 2.59
7986 8305 3.144506 CAAAGTGAGCACAAGGAGACAT 58.855 45.455 3.19 0.00 0.00 3.06
7987 8306 2.564771 CAAAGTGAGCACAAGGAGACA 58.435 47.619 3.19 0.00 0.00 3.41
7988 8307 1.876156 CCAAAGTGAGCACAAGGAGAC 59.124 52.381 3.19 0.00 0.00 3.36
8016 9356 7.305474 CAGAAATGTAAAGAAAGGTTGCGTAT 58.695 34.615 0.00 0.00 0.00 3.06
8030 9370 4.144297 ACAGCCTCTTGCAGAAATGTAAA 58.856 39.130 0.00 0.00 44.83 2.01
8031 9371 3.754965 ACAGCCTCTTGCAGAAATGTAA 58.245 40.909 0.00 0.00 44.83 2.41
8055 9395 2.627699 GTTGCCTTGGTTCAAATCCTGA 59.372 45.455 0.00 0.00 0.00 3.86
8100 9457 3.578716 ACTGACATTTCTTCGAGAAGGGA 59.421 43.478 12.32 2.96 35.37 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.