Multiple sequence alignment - TraesCS3B01G356100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G356100 chr3B 100.000 2324 0 0 1 2324 566476980 566474657 0.000000e+00 4292.0
1 TraesCS3B01G356100 chr3B 88.931 1310 79 41 318 1598 566538468 566537196 0.000000e+00 1555.0
2 TraesCS3B01G356100 chr3A 86.272 1792 175 31 594 2324 572039443 572037662 0.000000e+00 1881.0
3 TraesCS3B01G356100 chr3A 87.901 1372 72 43 314 1643 572044545 572043226 0.000000e+00 1528.0
4 TraesCS3B01G356100 chr3A 85.714 245 18 8 315 546 572039698 572039458 2.310000e-60 243.0
5 TraesCS3B01G356100 chr3A 75.849 265 52 7 1944 2207 658731262 658731515 8.720000e-25 124.0
6 TraesCS3B01G356100 chr3D 90.730 1370 62 30 275 1612 433513129 433511793 0.000000e+00 1766.0
7 TraesCS3B01G356100 chr3D 90.385 1196 65 27 602 1780 433504175 433503013 0.000000e+00 1526.0
8 TraesCS3B01G356100 chr3D 87.050 278 19 9 315 579 433505694 433505421 4.850000e-77 298.0
9 TraesCS3B01G356100 chr3D 88.710 124 9 3 1522 1643 433511832 433511712 1.860000e-31 147.0
10 TraesCS3B01G356100 chr6A 78.846 520 91 13 1716 2227 554782259 554781751 1.330000e-87 333.0
11 TraesCS3B01G356100 chr7D 78.486 502 85 20 1705 2200 29728500 29728984 8.070000e-80 307.0
12 TraesCS3B01G356100 chr7D 77.914 489 93 13 1716 2196 403643556 403644037 8.120000e-75 291.0
13 TraesCS3B01G356100 chr6B 76.891 476 94 13 1739 2207 493355694 493356160 2.960000e-64 255.0
14 TraesCS3B01G356100 chr6D 79.456 331 63 5 1747 2072 461867089 461867419 1.800000e-56 230.0
15 TraesCS3B01G356100 chr1D 81.319 273 45 6 1727 1995 365430492 365430222 1.400000e-52 217.0
16 TraesCS3B01G356100 chr2D 77.225 382 68 12 1870 2244 99724301 99724670 3.030000e-49 206.0
17 TraesCS3B01G356100 chr2D 95.652 46 1 1 2163 2207 13928398 13928443 3.200000e-09 73.1
18 TraesCS3B01G356100 chr4A 76.946 334 69 7 1764 2092 530764530 530764200 1.420000e-42 183.0
19 TraesCS3B01G356100 chr4A 74.654 434 98 11 1704 2130 584075370 584075798 5.100000e-42 182.0
20 TraesCS3B01G356100 chr7A 75.853 381 75 13 1819 2194 653998124 653997756 6.600000e-41 178.0
21 TraesCS3B01G356100 chr4D 78.926 242 40 8 1899 2136 83281515 83281749 1.110000e-33 154.0
22 TraesCS3B01G356100 chr1B 74.734 376 73 14 1865 2236 487427807 487428164 5.170000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G356100 chr3B 566474657 566476980 2323 True 4292.000000 4292 100.0000 1 2324 1 chr3B.!!$R1 2323
1 TraesCS3B01G356100 chr3B 566537196 566538468 1272 True 1555.000000 1555 88.9310 318 1598 1 chr3B.!!$R2 1280
2 TraesCS3B01G356100 chr3A 572037662 572044545 6883 True 1217.333333 1881 86.6290 314 2324 3 chr3A.!!$R1 2010
3 TraesCS3B01G356100 chr3D 433511712 433513129 1417 True 956.500000 1766 89.7200 275 1643 2 chr3D.!!$R2 1368
4 TraesCS3B01G356100 chr3D 433503013 433505694 2681 True 912.000000 1526 88.7175 315 1780 2 chr3D.!!$R1 1465
5 TraesCS3B01G356100 chr6A 554781751 554782259 508 True 333.000000 333 78.8460 1716 2227 1 chr6A.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.042708 GATGCATGCTACGCTCGTTG 60.043 55.0 20.33 0.0 0.0 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 8213 0.387239 GGGTTTCTCGTTGTGCATGC 60.387 55.0 11.82 11.82 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.838531 ATCGAAACTTCTTCTATCTCGGT 57.161 39.130 0.00 0.00 0.00 4.69
23 24 5.640189 TCGAAACTTCTTCTATCTCGGTT 57.360 39.130 0.00 0.00 0.00 4.44
24 25 5.399858 TCGAAACTTCTTCTATCTCGGTTG 58.600 41.667 0.00 0.00 0.00 3.77
25 26 5.048224 TCGAAACTTCTTCTATCTCGGTTGT 60.048 40.000 0.00 0.00 0.00 3.32
26 27 5.286558 CGAAACTTCTTCTATCTCGGTTGTC 59.713 44.000 0.00 0.00 0.00 3.18
27 28 5.723672 AACTTCTTCTATCTCGGTTGTCA 57.276 39.130 0.00 0.00 0.00 3.58
28 29 5.723672 ACTTCTTCTATCTCGGTTGTCAA 57.276 39.130 0.00 0.00 0.00 3.18
29 30 6.097915 ACTTCTTCTATCTCGGTTGTCAAA 57.902 37.500 0.00 0.00 0.00 2.69
30 31 6.159988 ACTTCTTCTATCTCGGTTGTCAAAG 58.840 40.000 0.00 0.00 0.00 2.77
31 32 5.977489 TCTTCTATCTCGGTTGTCAAAGA 57.023 39.130 0.00 0.00 0.00 2.52
32 33 5.955488 TCTTCTATCTCGGTTGTCAAAGAG 58.045 41.667 11.22 11.22 0.00 2.85
33 34 5.710567 TCTTCTATCTCGGTTGTCAAAGAGA 59.289 40.000 18.60 18.60 42.93 3.10
35 36 6.531503 TCTATCTCGGTTGTCAAAGAGATT 57.468 37.500 26.50 16.81 45.10 2.40
36 37 7.640597 TCTATCTCGGTTGTCAAAGAGATTA 57.359 36.000 26.50 17.93 45.10 1.75
37 38 8.239038 TCTATCTCGGTTGTCAAAGAGATTAT 57.761 34.615 26.50 14.62 45.10 1.28
38 39 8.138074 TCTATCTCGGTTGTCAAAGAGATTATG 58.862 37.037 26.50 19.90 45.10 1.90
39 40 6.037786 TCTCGGTTGTCAAAGAGATTATGT 57.962 37.500 14.54 0.00 35.13 2.29
40 41 5.869344 TCTCGGTTGTCAAAGAGATTATGTG 59.131 40.000 14.54 0.00 35.13 3.21
41 42 5.789521 TCGGTTGTCAAAGAGATTATGTGA 58.210 37.500 0.00 0.00 0.00 3.58
42 43 5.869344 TCGGTTGTCAAAGAGATTATGTGAG 59.131 40.000 0.00 0.00 0.00 3.51
43 44 5.446473 CGGTTGTCAAAGAGATTATGTGAGC 60.446 44.000 0.00 0.00 0.00 4.26
44 45 5.446473 GGTTGTCAAAGAGATTATGTGAGCG 60.446 44.000 0.00 0.00 0.00 5.03
45 46 3.618594 TGTCAAAGAGATTATGTGAGCGC 59.381 43.478 0.00 0.00 0.00 5.92
46 47 3.001736 GTCAAAGAGATTATGTGAGCGCC 59.998 47.826 2.29 0.00 0.00 6.53
47 48 2.246719 AAGAGATTATGTGAGCGCCC 57.753 50.000 2.29 0.00 0.00 6.13
48 49 1.123077 AGAGATTATGTGAGCGCCCA 58.877 50.000 2.29 0.00 0.00 5.36
49 50 1.069823 AGAGATTATGTGAGCGCCCAG 59.930 52.381 2.29 0.00 0.00 4.45
50 51 0.833287 AGATTATGTGAGCGCCCAGT 59.167 50.000 2.29 0.00 0.00 4.00
51 52 1.210478 AGATTATGTGAGCGCCCAGTT 59.790 47.619 2.29 0.00 0.00 3.16
52 53 1.599542 GATTATGTGAGCGCCCAGTTC 59.400 52.381 2.29 0.00 0.00 3.01
53 54 0.323302 TTATGTGAGCGCCCAGTTCA 59.677 50.000 2.29 0.00 37.76 3.18
54 55 0.541392 TATGTGAGCGCCCAGTTCAT 59.459 50.000 2.29 0.56 42.02 2.57
55 56 0.541392 ATGTGAGCGCCCAGTTCATA 59.459 50.000 2.29 0.00 42.02 2.15
56 57 0.391130 TGTGAGCGCCCAGTTCATAC 60.391 55.000 2.29 0.00 42.02 2.39
57 58 0.391130 GTGAGCGCCCAGTTCATACA 60.391 55.000 2.29 0.00 42.02 2.29
58 59 0.108186 TGAGCGCCCAGTTCATACAG 60.108 55.000 2.29 0.00 35.09 2.74
59 60 0.175760 GAGCGCCCAGTTCATACAGA 59.824 55.000 2.29 0.00 0.00 3.41
60 61 0.108138 AGCGCCCAGTTCATACAGAC 60.108 55.000 2.29 0.00 0.00 3.51
61 62 1.090052 GCGCCCAGTTCATACAGACC 61.090 60.000 0.00 0.00 0.00 3.85
62 63 0.249120 CGCCCAGTTCATACAGACCA 59.751 55.000 0.00 0.00 0.00 4.02
63 64 1.134401 CGCCCAGTTCATACAGACCAT 60.134 52.381 0.00 0.00 0.00 3.55
64 65 2.565841 GCCCAGTTCATACAGACCATC 58.434 52.381 0.00 0.00 0.00 3.51
65 66 2.092968 GCCCAGTTCATACAGACCATCA 60.093 50.000 0.00 0.00 0.00 3.07
66 67 3.622206 GCCCAGTTCATACAGACCATCAA 60.622 47.826 0.00 0.00 0.00 2.57
67 68 3.941483 CCCAGTTCATACAGACCATCAAC 59.059 47.826 0.00 0.00 0.00 3.18
68 69 3.618594 CCAGTTCATACAGACCATCAACG 59.381 47.826 0.00 0.00 0.00 4.10
69 70 3.618594 CAGTTCATACAGACCATCAACGG 59.381 47.826 0.00 0.00 0.00 4.44
70 71 2.309528 TCATACAGACCATCAACGGC 57.690 50.000 0.00 0.00 0.00 5.68
71 72 1.552792 TCATACAGACCATCAACGGCA 59.447 47.619 0.00 0.00 0.00 5.69
72 73 1.935873 CATACAGACCATCAACGGCAG 59.064 52.381 0.00 0.00 0.00 4.85
73 74 0.391130 TACAGACCATCAACGGCAGC 60.391 55.000 0.00 0.00 0.00 5.25
74 75 2.045926 AGACCATCAACGGCAGCC 60.046 61.111 0.00 0.00 0.00 4.85
75 76 2.359850 GACCATCAACGGCAGCCA 60.360 61.111 13.30 0.00 0.00 4.75
76 77 1.971167 GACCATCAACGGCAGCCAA 60.971 57.895 13.30 0.00 0.00 4.52
77 78 1.926511 GACCATCAACGGCAGCCAAG 61.927 60.000 13.30 0.00 0.00 3.61
78 79 2.180017 CATCAACGGCAGCCAAGC 59.820 61.111 13.30 0.00 0.00 4.01
79 80 3.434319 ATCAACGGCAGCCAAGCG 61.434 61.111 13.30 0.00 34.64 4.68
82 83 4.722700 AACGGCAGCCAAGCGGAT 62.723 61.111 13.30 0.00 38.12 4.18
83 84 4.722700 ACGGCAGCCAAGCGGATT 62.723 61.111 13.30 0.00 38.12 3.01
84 85 4.183686 CGGCAGCCAAGCGGATTG 62.184 66.667 13.30 0.00 37.03 2.67
85 86 2.751436 GGCAGCCAAGCGGATTGA 60.751 61.111 6.55 0.00 41.83 2.57
86 87 2.123428 GGCAGCCAAGCGGATTGAT 61.123 57.895 6.55 0.00 41.83 2.57
87 88 1.669999 GGCAGCCAAGCGGATTGATT 61.670 55.000 6.55 0.00 41.83 2.57
88 89 0.174162 GCAGCCAAGCGGATTGATTT 59.826 50.000 7.69 0.00 41.83 2.17
89 90 1.404583 GCAGCCAAGCGGATTGATTTT 60.405 47.619 7.69 0.00 41.83 1.82
90 91 2.533266 CAGCCAAGCGGATTGATTTTC 58.467 47.619 7.69 0.00 41.83 2.29
91 92 1.133025 AGCCAAGCGGATTGATTTTCG 59.867 47.619 7.69 0.00 41.83 3.46
92 93 1.132262 GCCAAGCGGATTGATTTTCGA 59.868 47.619 7.69 0.00 41.83 3.71
93 94 2.785679 CCAAGCGGATTGATTTTCGAC 58.214 47.619 7.69 0.00 41.83 4.20
94 95 2.161410 CCAAGCGGATTGATTTTCGACA 59.839 45.455 7.69 0.00 41.83 4.35
95 96 3.419915 CAAGCGGATTGATTTTCGACAG 58.580 45.455 0.00 0.00 41.83 3.51
96 97 2.972625 AGCGGATTGATTTTCGACAGA 58.027 42.857 0.00 0.00 0.00 3.41
97 98 3.535561 AGCGGATTGATTTTCGACAGAT 58.464 40.909 0.00 0.00 0.00 2.90
98 99 3.557595 AGCGGATTGATTTTCGACAGATC 59.442 43.478 0.00 0.00 0.00 2.75
99 100 3.557595 GCGGATTGATTTTCGACAGATCT 59.442 43.478 0.00 0.00 0.00 2.75
100 101 4.034510 GCGGATTGATTTTCGACAGATCTT 59.965 41.667 0.00 0.00 0.00 2.40
101 102 5.447818 GCGGATTGATTTTCGACAGATCTTT 60.448 40.000 0.00 0.00 0.00 2.52
102 103 6.546395 CGGATTGATTTTCGACAGATCTTTT 58.454 36.000 0.00 0.00 0.00 2.27
103 104 6.467047 CGGATTGATTTTCGACAGATCTTTTG 59.533 38.462 0.00 0.00 0.00 2.44
104 105 7.308435 GGATTGATTTTCGACAGATCTTTTGT 58.692 34.615 0.00 0.00 0.00 2.83
105 106 7.272084 GGATTGATTTTCGACAGATCTTTTGTG 59.728 37.037 0.00 0.00 0.00 3.33
106 107 6.000891 TGATTTTCGACAGATCTTTTGTGG 57.999 37.500 0.00 0.00 0.00 4.17
107 108 4.829064 TTTTCGACAGATCTTTTGTGGG 57.171 40.909 0.00 0.00 0.00 4.61
108 109 3.762407 TTCGACAGATCTTTTGTGGGA 57.238 42.857 0.00 0.00 0.00 4.37
109 110 3.762407 TCGACAGATCTTTTGTGGGAA 57.238 42.857 0.00 0.00 0.00 3.97
110 111 4.286297 TCGACAGATCTTTTGTGGGAAT 57.714 40.909 0.00 0.00 0.00 3.01
111 112 4.002982 TCGACAGATCTTTTGTGGGAATG 58.997 43.478 0.00 0.00 0.00 2.67
112 113 4.002982 CGACAGATCTTTTGTGGGAATGA 58.997 43.478 0.00 0.00 0.00 2.57
113 114 4.093998 CGACAGATCTTTTGTGGGAATGAG 59.906 45.833 0.00 0.00 0.00 2.90
114 115 4.338879 ACAGATCTTTTGTGGGAATGAGG 58.661 43.478 0.00 0.00 0.00 3.86
115 116 4.043310 ACAGATCTTTTGTGGGAATGAGGA 59.957 41.667 0.00 0.00 0.00 3.71
116 117 4.397417 CAGATCTTTTGTGGGAATGAGGAC 59.603 45.833 0.00 0.00 0.00 3.85
117 118 4.290722 AGATCTTTTGTGGGAATGAGGACT 59.709 41.667 0.00 0.00 0.00 3.85
118 119 4.021102 TCTTTTGTGGGAATGAGGACTC 57.979 45.455 0.00 0.00 0.00 3.36
119 120 2.472695 TTTGTGGGAATGAGGACTCG 57.527 50.000 0.00 0.00 0.00 4.18
120 121 1.639722 TTGTGGGAATGAGGACTCGA 58.360 50.000 0.00 0.00 0.00 4.04
121 122 0.895530 TGTGGGAATGAGGACTCGAC 59.104 55.000 0.00 0.00 0.00 4.20
122 123 0.895530 GTGGGAATGAGGACTCGACA 59.104 55.000 0.00 0.00 0.00 4.35
123 124 1.482593 GTGGGAATGAGGACTCGACAT 59.517 52.381 0.00 0.00 0.00 3.06
124 125 1.482182 TGGGAATGAGGACTCGACATG 59.518 52.381 0.00 0.00 0.00 3.21
125 126 1.482593 GGGAATGAGGACTCGACATGT 59.517 52.381 0.00 0.00 0.00 3.21
126 127 2.693591 GGGAATGAGGACTCGACATGTA 59.306 50.000 0.00 0.00 0.00 2.29
127 128 3.322254 GGGAATGAGGACTCGACATGTAT 59.678 47.826 0.00 0.00 0.00 2.29
128 129 4.523173 GGGAATGAGGACTCGACATGTATA 59.477 45.833 0.00 0.00 0.00 1.47
129 130 5.336055 GGGAATGAGGACTCGACATGTATAG 60.336 48.000 0.00 1.40 0.00 1.31
130 131 5.473846 GGAATGAGGACTCGACATGTATAGA 59.526 44.000 12.61 6.06 0.00 1.98
131 132 6.151985 GGAATGAGGACTCGACATGTATAGAT 59.848 42.308 12.61 0.58 0.00 1.98
132 133 5.948992 TGAGGACTCGACATGTATAGATG 57.051 43.478 8.27 8.27 0.00 2.90
133 134 4.762251 TGAGGACTCGACATGTATAGATGG 59.238 45.833 13.91 0.00 0.00 3.51
134 135 4.986783 AGGACTCGACATGTATAGATGGA 58.013 43.478 13.91 2.44 0.00 3.41
135 136 5.575157 AGGACTCGACATGTATAGATGGAT 58.425 41.667 13.91 0.00 0.00 3.41
136 137 5.650266 AGGACTCGACATGTATAGATGGATC 59.350 44.000 13.91 3.18 0.00 3.36
137 138 5.416013 GGACTCGACATGTATAGATGGATCA 59.584 44.000 13.91 0.00 0.00 2.92
138 139 6.096141 GGACTCGACATGTATAGATGGATCAT 59.904 42.308 13.91 0.00 0.00 2.45
139 140 7.283354 GGACTCGACATGTATAGATGGATCATA 59.717 40.741 13.91 0.00 0.00 2.15
140 141 8.759481 ACTCGACATGTATAGATGGATCATAT 57.241 34.615 13.91 0.00 0.00 1.78
141 142 9.194972 ACTCGACATGTATAGATGGATCATATT 57.805 33.333 13.91 0.00 0.00 1.28
154 155 9.352191 AGATGGATCATATTTCTTCAAGAAAGG 57.648 33.333 17.46 9.92 46.15 3.11
155 156 9.347240 GATGGATCATATTTCTTCAAGAAAGGA 57.653 33.333 17.46 14.26 46.15 3.36
156 157 9.878737 ATGGATCATATTTCTTCAAGAAAGGAT 57.121 29.630 17.46 17.62 46.15 3.24
165 166 9.972106 ATTTCTTCAAGAAAGGATAAGATGACT 57.028 29.630 17.46 0.00 46.15 3.41
166 167 9.442047 TTTCTTCAAGAAAGGATAAGATGACTC 57.558 33.333 8.60 0.00 39.13 3.36
167 168 7.261325 TCTTCAAGAAAGGATAAGATGACTCG 58.739 38.462 0.00 0.00 35.54 4.18
168 169 6.775594 TCAAGAAAGGATAAGATGACTCGA 57.224 37.500 0.00 0.00 0.00 4.04
169 170 7.170393 TCAAGAAAGGATAAGATGACTCGAA 57.830 36.000 0.00 0.00 0.00 3.71
170 171 7.036220 TCAAGAAAGGATAAGATGACTCGAAC 58.964 38.462 0.00 0.00 0.00 3.95
171 172 6.531503 AGAAAGGATAAGATGACTCGAACA 57.468 37.500 0.00 0.00 0.00 3.18
172 173 6.568869 AGAAAGGATAAGATGACTCGAACAG 58.431 40.000 0.00 0.00 0.00 3.16
173 174 6.378564 AGAAAGGATAAGATGACTCGAACAGA 59.621 38.462 0.00 0.00 0.00 3.41
174 175 6.723298 AAGGATAAGATGACTCGAACAGAT 57.277 37.500 0.00 0.00 0.00 2.90
175 176 6.325919 AGGATAAGATGACTCGAACAGATC 57.674 41.667 0.00 0.00 0.00 2.75
176 177 6.068010 AGGATAAGATGACTCGAACAGATCT 58.932 40.000 0.00 0.00 0.00 2.75
177 178 6.016360 AGGATAAGATGACTCGAACAGATCTG 60.016 42.308 21.37 21.37 0.00 2.90
178 179 6.016693 GGATAAGATGACTCGAACAGATCTGA 60.017 42.308 29.27 5.67 0.00 3.27
179 180 4.630894 AGATGACTCGAACAGATCTGAC 57.369 45.455 29.27 19.33 0.00 3.51
180 181 4.013050 AGATGACTCGAACAGATCTGACA 58.987 43.478 29.27 15.21 0.00 3.58
181 182 4.644234 AGATGACTCGAACAGATCTGACAT 59.356 41.667 29.27 18.45 0.00 3.06
182 183 4.102035 TGACTCGAACAGATCTGACATG 57.898 45.455 29.27 14.73 0.00 3.21
183 184 3.119352 TGACTCGAACAGATCTGACATGG 60.119 47.826 29.27 16.52 0.00 3.66
184 185 2.828520 ACTCGAACAGATCTGACATGGT 59.171 45.455 29.27 17.10 0.00 3.55
185 186 4.017126 ACTCGAACAGATCTGACATGGTA 58.983 43.478 29.27 6.68 0.00 3.25
186 187 4.646945 ACTCGAACAGATCTGACATGGTAT 59.353 41.667 29.27 0.63 0.00 2.73
187 188 4.936891 TCGAACAGATCTGACATGGTATG 58.063 43.478 29.27 7.91 0.00 2.39
189 190 4.505556 CGAACAGATCTGACATGGTATGTG 59.494 45.833 29.27 0.00 45.03 3.21
190 191 3.801698 ACAGATCTGACATGGTATGTGC 58.198 45.455 29.27 0.00 45.03 4.57
191 192 3.136763 CAGATCTGACATGGTATGTGCC 58.863 50.000 18.34 0.00 45.03 5.01
192 193 2.773661 AGATCTGACATGGTATGTGCCA 59.226 45.455 0.00 0.00 45.03 4.92
194 195 3.650281 TCTGACATGGTATGTGCCATT 57.350 42.857 0.00 0.00 46.33 3.16
195 196 3.544684 TCTGACATGGTATGTGCCATTC 58.455 45.455 0.00 3.46 46.33 2.67
196 197 3.054508 TCTGACATGGTATGTGCCATTCA 60.055 43.478 0.00 7.17 46.33 2.57
197 198 3.694926 TGACATGGTATGTGCCATTCAA 58.305 40.909 0.00 0.00 46.33 2.69
198 199 4.279982 TGACATGGTATGTGCCATTCAAT 58.720 39.130 0.00 0.00 46.33 2.57
199 200 4.098196 TGACATGGTATGTGCCATTCAATG 59.902 41.667 0.00 0.00 46.33 2.82
200 201 4.279982 ACATGGTATGTGCCATTCAATGA 58.720 39.130 0.00 0.00 46.33 2.57
201 202 4.897076 ACATGGTATGTGCCATTCAATGAT 59.103 37.500 0.00 0.00 46.33 2.45
202 203 4.922471 TGGTATGTGCCATTCAATGATG 57.078 40.909 0.00 0.00 32.81 3.07
203 204 3.068448 TGGTATGTGCCATTCAATGATGC 59.932 43.478 0.00 0.00 32.81 3.91
204 205 3.068448 GGTATGTGCCATTCAATGATGCA 59.932 43.478 0.00 0.00 0.00 3.96
205 206 4.262292 GGTATGTGCCATTCAATGATGCAT 60.262 41.667 0.00 0.00 0.00 3.96
206 207 3.172229 TGTGCCATTCAATGATGCATG 57.828 42.857 2.46 0.00 30.99 4.06
207 208 1.864711 GTGCCATTCAATGATGCATGC 59.135 47.619 11.82 11.82 29.97 4.06
208 209 1.760029 TGCCATTCAATGATGCATGCT 59.240 42.857 20.33 4.11 29.97 3.79
209 210 2.959707 TGCCATTCAATGATGCATGCTA 59.040 40.909 20.33 5.73 29.97 3.49
210 211 3.243602 TGCCATTCAATGATGCATGCTAC 60.244 43.478 20.33 13.01 29.97 3.58
211 212 3.561503 CCATTCAATGATGCATGCTACG 58.438 45.455 20.33 1.63 29.97 3.51
212 213 2.761392 TTCAATGATGCATGCTACGC 57.239 45.000 20.33 6.01 0.00 4.42
213 214 1.957668 TCAATGATGCATGCTACGCT 58.042 45.000 20.33 0.00 0.00 5.07
214 215 1.869132 TCAATGATGCATGCTACGCTC 59.131 47.619 20.33 8.32 0.00 5.03
215 216 0.863799 AATGATGCATGCTACGCTCG 59.136 50.000 20.33 0.00 0.00 5.03
216 217 0.249615 ATGATGCATGCTACGCTCGT 60.250 50.000 20.33 6.48 0.00 4.18
217 218 0.460109 TGATGCATGCTACGCTCGTT 60.460 50.000 20.33 0.00 0.00 3.85
218 219 0.042708 GATGCATGCTACGCTCGTTG 60.043 55.000 20.33 0.00 0.00 4.10
219 220 1.431488 ATGCATGCTACGCTCGTTGG 61.431 55.000 20.33 0.00 0.00 3.77
220 221 1.809619 GCATGCTACGCTCGTTGGA 60.810 57.895 11.37 0.00 0.00 3.53
221 222 1.756375 GCATGCTACGCTCGTTGGAG 61.756 60.000 11.37 0.00 43.46 3.86
222 223 0.179137 CATGCTACGCTCGTTGGAGA 60.179 55.000 0.00 0.00 43.27 3.71
223 224 0.530744 ATGCTACGCTCGTTGGAGAA 59.469 50.000 0.00 0.00 43.27 2.87
224 225 0.315886 TGCTACGCTCGTTGGAGAAA 59.684 50.000 0.00 0.00 43.27 2.52
225 226 0.992802 GCTACGCTCGTTGGAGAAAG 59.007 55.000 0.00 0.00 43.27 2.62
226 227 1.669211 GCTACGCTCGTTGGAGAAAGT 60.669 52.381 0.00 0.00 43.27 2.66
227 228 2.415090 GCTACGCTCGTTGGAGAAAGTA 60.415 50.000 0.00 0.00 43.27 2.24
228 229 2.806608 ACGCTCGTTGGAGAAAGTAA 57.193 45.000 0.00 0.00 43.27 2.24
229 230 3.102052 ACGCTCGTTGGAGAAAGTAAA 57.898 42.857 0.00 0.00 43.27 2.01
230 231 3.460103 ACGCTCGTTGGAGAAAGTAAAA 58.540 40.909 0.00 0.00 43.27 1.52
231 232 4.062991 ACGCTCGTTGGAGAAAGTAAAAT 58.937 39.130 0.00 0.00 43.27 1.82
232 233 4.084013 ACGCTCGTTGGAGAAAGTAAAATG 60.084 41.667 0.00 0.00 43.27 2.32
233 234 4.159120 GCTCGTTGGAGAAAGTAAAATGC 58.841 43.478 0.00 0.00 43.27 3.56
234 235 4.394795 CTCGTTGGAGAAAGTAAAATGCG 58.605 43.478 0.00 0.00 43.27 4.73
235 236 4.059511 TCGTTGGAGAAAGTAAAATGCGA 58.940 39.130 0.00 0.00 0.00 5.10
236 237 4.151689 TCGTTGGAGAAAGTAAAATGCGAG 59.848 41.667 0.00 0.00 0.00 5.03
237 238 4.151689 CGTTGGAGAAAGTAAAATGCGAGA 59.848 41.667 0.00 0.00 0.00 4.04
238 239 5.333798 CGTTGGAGAAAGTAAAATGCGAGAA 60.334 40.000 0.00 0.00 0.00 2.87
239 240 5.862924 TGGAGAAAGTAAAATGCGAGAAG 57.137 39.130 0.00 0.00 0.00 2.85
240 241 5.305585 TGGAGAAAGTAAAATGCGAGAAGT 58.694 37.500 0.00 0.00 0.00 3.01
241 242 6.460781 TGGAGAAAGTAAAATGCGAGAAGTA 58.539 36.000 0.00 0.00 0.00 2.24
242 243 6.932400 TGGAGAAAGTAAAATGCGAGAAGTAA 59.068 34.615 0.00 0.00 0.00 2.24
243 244 7.606456 TGGAGAAAGTAAAATGCGAGAAGTAAT 59.394 33.333 0.00 0.00 0.00 1.89
244 245 8.117370 GGAGAAAGTAAAATGCGAGAAGTAATC 58.883 37.037 0.00 0.00 0.00 1.75
245 246 8.779354 AGAAAGTAAAATGCGAGAAGTAATCT 57.221 30.769 0.00 0.00 42.61 2.40
246 247 9.220767 AGAAAGTAAAATGCGAGAAGTAATCTT 57.779 29.630 0.00 0.00 38.96 2.40
247 248 9.827411 GAAAGTAAAATGCGAGAAGTAATCTTT 57.173 29.630 0.00 0.00 38.96 2.52
249 250 9.827411 AAGTAAAATGCGAGAAGTAATCTTTTC 57.173 29.630 0.00 0.00 38.96 2.29
250 251 8.451748 AGTAAAATGCGAGAAGTAATCTTTTCC 58.548 33.333 0.00 0.00 38.96 3.13
251 252 7.454260 AAAATGCGAGAAGTAATCTTTTCCT 57.546 32.000 0.00 0.00 38.96 3.36
252 253 6.428385 AATGCGAGAAGTAATCTTTTCCTG 57.572 37.500 0.00 0.00 38.96 3.86
253 254 5.147330 TGCGAGAAGTAATCTTTTCCTGA 57.853 39.130 0.00 0.00 38.96 3.86
254 255 5.547465 TGCGAGAAGTAATCTTTTCCTGAA 58.453 37.500 0.00 0.00 38.96 3.02
255 256 5.639506 TGCGAGAAGTAATCTTTTCCTGAAG 59.360 40.000 0.00 0.00 38.96 3.02
256 257 5.869888 GCGAGAAGTAATCTTTTCCTGAAGA 59.130 40.000 0.00 0.00 38.96 2.87
257 258 6.369065 GCGAGAAGTAATCTTTTCCTGAAGAA 59.631 38.462 0.00 0.00 38.96 2.52
258 259 7.095187 GCGAGAAGTAATCTTTTCCTGAAGAAA 60.095 37.037 0.00 0.00 42.82 2.52
259 260 8.439286 CGAGAAGTAATCTTTTCCTGAAGAAAG 58.561 37.037 0.00 0.00 45.11 2.62
260 261 9.495572 GAGAAGTAATCTTTTCCTGAAGAAAGA 57.504 33.333 1.55 1.55 45.11 2.52
261 262 9.278978 AGAAGTAATCTTTTCCTGAAGAAAGAC 57.721 33.333 1.11 0.00 45.11 3.01
262 263 7.659652 AGTAATCTTTTCCTGAAGAAAGACG 57.340 36.000 1.11 0.00 45.11 4.18
263 264 7.442656 AGTAATCTTTTCCTGAAGAAAGACGA 58.557 34.615 0.00 0.00 45.11 4.20
264 265 8.097662 AGTAATCTTTTCCTGAAGAAAGACGAT 58.902 33.333 0.00 0.00 45.11 3.73
265 266 9.367444 GTAATCTTTTCCTGAAGAAAGACGATA 57.633 33.333 0.00 0.00 45.11 2.92
269 270 9.751542 TCTTTTCCTGAAGAAAGACGATATATC 57.248 33.333 2.34 2.34 45.11 1.63
354 366 2.759973 CTCGCAGGAGTGGCCCTA 60.760 66.667 0.00 0.00 37.37 3.53
429 443 1.304713 CAGCAACCTGCCCCAAGAT 60.305 57.895 0.00 0.00 46.52 2.40
519 534 2.808543 GGCAATTCACTCTCGTGTTTCT 59.191 45.455 0.00 0.00 41.89 2.52
525 540 2.031944 TCACTCTCGTGTTTCTCTGACG 60.032 50.000 0.00 0.00 41.89 4.35
625 1869 4.007644 TGCCTACGCAGCAGCACT 62.008 61.111 0.82 0.00 41.12 4.40
685 1929 4.473520 CCTGCCGGCGGAAGATGT 62.474 66.667 35.52 0.00 26.79 3.06
686 1930 2.436646 CTGCCGGCGGAAGATGTT 60.437 61.111 30.67 0.00 26.79 2.71
687 1931 2.435938 TGCCGGCGGAAGATGTTC 60.436 61.111 33.44 9.82 0.00 3.18
754 1998 4.698625 ACCCGGACTTCGCCTCCT 62.699 66.667 0.73 0.00 37.59 3.69
755 1999 3.839432 CCCGGACTTCGCCTCCTC 61.839 72.222 0.73 0.00 37.59 3.71
756 2000 3.839432 CCGGACTTCGCCTCCTCC 61.839 72.222 0.00 0.00 37.59 4.30
757 2001 3.839432 CGGACTTCGCCTCCTCCC 61.839 72.222 0.00 0.00 0.00 4.30
758 2002 3.839432 GGACTTCGCCTCCTCCCG 61.839 72.222 0.00 0.00 0.00 5.14
759 2003 3.069318 GACTTCGCCTCCTCCCGT 61.069 66.667 0.00 0.00 0.00 5.28
760 2004 3.066233 GACTTCGCCTCCTCCCGTC 62.066 68.421 0.00 0.00 0.00 4.79
761 2005 3.839432 CTTCGCCTCCTCCCGTCC 61.839 72.222 0.00 0.00 0.00 4.79
823 2083 0.602638 TGCGAAGAATGAACCAGCGT 60.603 50.000 0.00 0.00 0.00 5.07
875 2141 3.814842 TCTTCGTCACATTGCATCTTGTT 59.185 39.130 0.00 0.00 0.00 2.83
887 2160 8.262227 ACATTGCATCTTGTTTATCCATTCATT 58.738 29.630 0.00 0.00 0.00 2.57
987 7111 1.444553 CAGTCGTCAGTCGGGAAGC 60.445 63.158 0.00 0.00 40.32 3.86
1098 7231 4.047059 GAAGACGACCGCCACCGA 62.047 66.667 0.00 0.00 36.29 4.69
1348 7485 0.734942 CTTGGTGGTGGCTACGTACG 60.735 60.000 15.01 15.01 0.00 3.67
1349 7486 1.462731 TTGGTGGTGGCTACGTACGT 61.463 55.000 25.98 25.98 0.00 3.57
1350 7487 0.607762 TGGTGGTGGCTACGTACGTA 60.608 55.000 25.41 25.41 0.00 3.57
1351 7488 0.179163 GGTGGTGGCTACGTACGTAC 60.179 60.000 23.60 16.35 0.00 3.67
1352 7489 0.804989 GTGGTGGCTACGTACGTACT 59.195 55.000 23.60 12.43 0.00 2.73
1353 7490 2.006888 GTGGTGGCTACGTACGTACTA 58.993 52.381 23.60 12.17 0.00 1.82
1557 7716 4.694012 GTGCATAAGATGTACGTGTAGC 57.306 45.455 0.00 0.00 36.21 3.58
1591 7800 9.755064 GTAACAAATTGTCACTGATGTACATAC 57.245 33.333 8.71 3.48 0.00 2.39
1635 7844 5.437060 ACTGTGAATACCCTATTTCGCATT 58.563 37.500 0.00 0.00 0.00 3.56
1643 7853 5.262588 ACCCTATTTCGCATTCCATTTTC 57.737 39.130 0.00 0.00 0.00 2.29
1666 7876 7.722795 TCTGTGAATCGTCATTTTCTGTTAA 57.277 32.000 0.00 0.00 35.80 2.01
1695 7905 5.411831 TTCATACTGTGAGATGTGAAGCT 57.588 39.130 0.00 0.00 38.29 3.74
1772 7983 7.755373 GGAAGTACAAAATTCCTCAAGCATAAC 59.245 37.037 4.72 0.00 41.52 1.89
1785 7996 6.392353 TCAAGCATAACAAAAATTGCATCG 57.608 33.333 0.00 0.00 37.56 3.84
1791 8002 6.694411 GCATAACAAAAATTGCATCGAGATCT 59.306 34.615 0.00 0.00 35.22 2.75
1797 8008 8.514594 ACAAAAATTGCATCGAGATCTTTAGAA 58.485 29.630 0.00 0.00 0.00 2.10
1807 8018 4.091509 CGAGATCTTTAGAACACCAAACGG 59.908 45.833 0.00 0.00 0.00 4.44
1816 8027 1.228003 CACCAAACGGCCACTACCA 60.228 57.895 2.24 0.00 0.00 3.25
1817 8028 0.608035 CACCAAACGGCCACTACCAT 60.608 55.000 2.24 0.00 0.00 3.55
1856 8067 4.406173 CGCCGCTGTCGTCACTCT 62.406 66.667 0.00 0.00 0.00 3.24
1858 8069 2.179517 CCGCTGTCGTCACTCTCC 59.820 66.667 0.00 0.00 0.00 3.71
1859 8070 2.179517 CGCTGTCGTCACTCTCCC 59.820 66.667 0.00 0.00 0.00 4.30
1914 8127 1.315257 AATCTTCGTGCACATGCCCC 61.315 55.000 18.64 0.00 41.18 5.80
1923 8137 1.000739 CACATGCCCCAAGGACCAT 59.999 57.895 0.00 0.00 33.47 3.55
1925 8139 1.307309 CATGCCCCAAGGACCATCA 59.693 57.895 0.00 0.00 33.47 3.07
1926 8140 1.039233 CATGCCCCAAGGACCATCAC 61.039 60.000 0.00 0.00 33.47 3.06
1946 8160 2.943033 ACCATGTAGCCATAGTTTTCGC 59.057 45.455 0.00 0.00 0.00 4.70
1975 8189 7.577303 TGAACCCTTGAATAGATCTAAAGCAT 58.423 34.615 6.52 0.00 0.00 3.79
1983 8197 9.547753 TTGAATAGATCTAAAGCATCTAACACC 57.452 33.333 6.52 0.00 36.62 4.16
1992 8206 4.471904 AGCATCTAACACCAAATCTCGA 57.528 40.909 0.00 0.00 0.00 4.04
1995 8209 4.572389 GCATCTAACACCAAATCTCGACAT 59.428 41.667 0.00 0.00 0.00 3.06
1999 8213 0.298707 CACCAAATCTCGACATCGCG 59.701 55.000 0.00 0.00 39.60 5.87
2001 8215 1.420641 CCAAATCTCGACATCGCGCA 61.421 55.000 8.75 0.00 39.60 6.09
2007 8221 3.852203 CGACATCGCGCATGCACA 61.852 61.111 19.57 0.00 42.97 4.57
2009 8223 1.864750 GACATCGCGCATGCACAAC 60.865 57.895 19.57 2.61 42.97 3.32
2030 8244 0.245813 AGAAACCCTAACCTCGACGC 59.754 55.000 0.00 0.00 0.00 5.19
2036 8250 1.294138 CTAACCTCGACGCCCCAAA 59.706 57.895 0.00 0.00 0.00 3.28
2050 8264 0.955919 CCCAAAGAGACGGCAGGAAC 60.956 60.000 0.00 0.00 0.00 3.62
2062 8276 2.036890 AGGAACCTACGCCGGAGT 59.963 61.111 17.10 17.10 0.00 3.85
2120 8334 3.126000 GGATCGAAGCTTGGAAGACAAAG 59.874 47.826 15.48 0.00 38.91 2.77
2132 8346 5.424757 TGGAAGACAAAGTCGAAGAAGAAA 58.575 37.500 0.00 0.00 39.69 2.52
2133 8347 6.055588 TGGAAGACAAAGTCGAAGAAGAAAT 58.944 36.000 0.00 0.00 39.69 2.17
2153 8367 2.102357 CGACATCCGTCCGAGTGG 59.898 66.667 0.00 0.00 39.11 4.00
2161 8375 4.451150 GTCCGAGTGGCGCATCCA 62.451 66.667 10.83 0.00 44.18 3.41
2202 8416 2.029623 CCTAAACTACTAGCCGGAGCA 58.970 52.381 5.05 0.00 43.56 4.26
2207 8421 0.466555 CTACTAGCCGGAGCAGAGGT 60.467 60.000 5.05 0.00 43.56 3.85
2212 8426 3.062466 CCGGAGCAGAGGTGTCGA 61.062 66.667 0.00 0.00 0.00 4.20
2217 8431 1.205893 GGAGCAGAGGTGTCGAGATTT 59.794 52.381 0.00 0.00 0.00 2.17
2227 8441 1.001248 TCGAGATTTCCCTCCCCGT 59.999 57.895 0.00 0.00 0.00 5.28
2232 8446 2.029307 GATTTCCCTCCCCGTCTCCG 62.029 65.000 0.00 0.00 0.00 4.63
2250 8464 2.978824 GCCACCGAAGCCTGTAGA 59.021 61.111 0.00 0.00 0.00 2.59
2256 8470 1.272536 ACCGAAGCCTGTAGAGGAGAA 60.273 52.381 10.79 0.00 42.93 2.87
2262 8476 1.936547 GCCTGTAGAGGAGAATTTGCG 59.063 52.381 10.79 0.00 42.93 4.85
2269 8483 0.253044 AGGAGAATTTGCGCTAGCCA 59.747 50.000 9.73 5.42 44.33 4.75
2271 8485 1.265365 GGAGAATTTGCGCTAGCCATC 59.735 52.381 9.73 3.52 44.33 3.51
2282 8496 2.427540 CTAGCCATCGAGGGGAAGCG 62.428 65.000 19.23 0.00 38.09 4.68
2286 8500 2.127869 CATCGAGGGGAAGCGGAGA 61.128 63.158 0.00 0.00 0.00 3.71
2291 8505 1.003718 AGGGGAAGCGGAGAAAACG 60.004 57.895 0.00 0.00 0.00 3.60
2299 8513 2.162716 CGGAGAAAACGCTTGGAGG 58.837 57.895 0.00 0.00 0.00 4.30
2304 8518 3.304726 GGAGAAAACGCTTGGAGGAAAAG 60.305 47.826 0.00 0.00 0.00 2.27
2312 8526 5.769367 ACGCTTGGAGGAAAAGTTAATTTC 58.231 37.500 0.00 0.00 38.34 2.17
2313 8527 5.535030 ACGCTTGGAGGAAAAGTTAATTTCT 59.465 36.000 2.47 0.00 38.92 2.52
2316 8530 6.863645 GCTTGGAGGAAAAGTTAATTTCTGAC 59.136 38.462 2.47 0.00 38.92 3.51
2318 8532 7.510549 TGGAGGAAAAGTTAATTTCTGACTG 57.489 36.000 2.47 0.00 38.92 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.048224 ACAACCGAGATAGAAGAAGTTTCGA 60.048 40.000 0.00 0.00 0.00 3.71
2 3 5.162075 ACAACCGAGATAGAAGAAGTTTCG 58.838 41.667 0.00 0.00 0.00 3.46
3 4 6.157211 TGACAACCGAGATAGAAGAAGTTTC 58.843 40.000 0.00 0.00 0.00 2.78
4 5 6.097915 TGACAACCGAGATAGAAGAAGTTT 57.902 37.500 0.00 0.00 0.00 2.66
5 6 5.723672 TGACAACCGAGATAGAAGAAGTT 57.276 39.130 0.00 0.00 0.00 2.66
6 7 5.723672 TTGACAACCGAGATAGAAGAAGT 57.276 39.130 0.00 0.00 0.00 3.01
7 8 6.390721 TCTTTGACAACCGAGATAGAAGAAG 58.609 40.000 0.00 0.00 0.00 2.85
8 9 6.208797 TCTCTTTGACAACCGAGATAGAAGAA 59.791 38.462 10.74 0.00 0.00 2.52
9 10 5.710567 TCTCTTTGACAACCGAGATAGAAGA 59.289 40.000 10.74 0.00 0.00 2.87
10 11 5.955488 TCTCTTTGACAACCGAGATAGAAG 58.045 41.667 10.74 0.00 0.00 2.85
11 12 5.977489 TCTCTTTGACAACCGAGATAGAA 57.023 39.130 10.74 0.00 0.00 2.10
12 13 6.531503 AATCTCTTTGACAACCGAGATAGA 57.468 37.500 20.94 6.50 41.10 1.98
13 14 7.923344 ACATAATCTCTTTGACAACCGAGATAG 59.077 37.037 20.94 17.24 41.10 2.08
14 15 7.706607 CACATAATCTCTTTGACAACCGAGATA 59.293 37.037 20.94 13.63 41.10 1.98
15 16 6.536582 CACATAATCTCTTTGACAACCGAGAT 59.463 38.462 17.40 17.40 43.11 2.75
16 17 5.869344 CACATAATCTCTTTGACAACCGAGA 59.131 40.000 15.12 15.12 36.99 4.04
17 18 5.869344 TCACATAATCTCTTTGACAACCGAG 59.131 40.000 7.16 7.16 0.00 4.63
18 19 5.789521 TCACATAATCTCTTTGACAACCGA 58.210 37.500 0.00 0.00 0.00 4.69
19 20 5.446473 GCTCACATAATCTCTTTGACAACCG 60.446 44.000 0.00 0.00 0.00 4.44
20 21 5.446473 CGCTCACATAATCTCTTTGACAACC 60.446 44.000 0.00 0.00 0.00 3.77
21 22 5.554636 CGCTCACATAATCTCTTTGACAAC 58.445 41.667 0.00 0.00 0.00 3.32
22 23 4.093408 GCGCTCACATAATCTCTTTGACAA 59.907 41.667 0.00 0.00 0.00 3.18
23 24 3.618594 GCGCTCACATAATCTCTTTGACA 59.381 43.478 0.00 0.00 0.00 3.58
24 25 3.001736 GGCGCTCACATAATCTCTTTGAC 59.998 47.826 7.64 0.00 0.00 3.18
25 26 3.198068 GGCGCTCACATAATCTCTTTGA 58.802 45.455 7.64 0.00 0.00 2.69
26 27 2.289002 GGGCGCTCACATAATCTCTTTG 59.711 50.000 7.64 0.00 0.00 2.77
27 28 2.092968 TGGGCGCTCACATAATCTCTTT 60.093 45.455 5.44 0.00 0.00 2.52
28 29 1.486310 TGGGCGCTCACATAATCTCTT 59.514 47.619 5.44 0.00 0.00 2.85
29 30 1.069823 CTGGGCGCTCACATAATCTCT 59.930 52.381 5.44 0.00 0.00 3.10
30 31 1.202580 ACTGGGCGCTCACATAATCTC 60.203 52.381 5.44 0.00 0.00 2.75
31 32 0.833287 ACTGGGCGCTCACATAATCT 59.167 50.000 5.44 0.00 0.00 2.40
32 33 1.599542 GAACTGGGCGCTCACATAATC 59.400 52.381 5.44 0.00 0.00 1.75
33 34 1.065491 TGAACTGGGCGCTCACATAAT 60.065 47.619 5.44 0.00 0.00 1.28
34 35 0.323302 TGAACTGGGCGCTCACATAA 59.677 50.000 5.44 0.00 0.00 1.90
35 36 0.541392 ATGAACTGGGCGCTCACATA 59.459 50.000 5.44 0.00 0.00 2.29
36 37 0.541392 TATGAACTGGGCGCTCACAT 59.459 50.000 5.44 11.90 0.00 3.21
37 38 0.391130 GTATGAACTGGGCGCTCACA 60.391 55.000 5.44 2.87 0.00 3.58
38 39 0.391130 TGTATGAACTGGGCGCTCAC 60.391 55.000 5.44 0.00 0.00 3.51
39 40 0.108186 CTGTATGAACTGGGCGCTCA 60.108 55.000 10.90 10.90 0.00 4.26
40 41 0.175760 TCTGTATGAACTGGGCGCTC 59.824 55.000 7.64 2.47 0.00 5.03
41 42 0.108138 GTCTGTATGAACTGGGCGCT 60.108 55.000 7.64 0.00 0.00 5.92
42 43 1.090052 GGTCTGTATGAACTGGGCGC 61.090 60.000 0.00 0.00 0.00 6.53
43 44 0.249120 TGGTCTGTATGAACTGGGCG 59.751 55.000 0.00 0.00 32.49 6.13
44 45 2.092968 TGATGGTCTGTATGAACTGGGC 60.093 50.000 0.00 0.00 32.49 5.36
45 46 3.912496 TGATGGTCTGTATGAACTGGG 57.088 47.619 0.00 0.00 32.49 4.45
46 47 3.618594 CGTTGATGGTCTGTATGAACTGG 59.381 47.826 0.00 0.00 32.49 4.00
47 48 3.618594 CCGTTGATGGTCTGTATGAACTG 59.381 47.826 0.00 0.00 32.49 3.16
48 49 3.861840 CCGTTGATGGTCTGTATGAACT 58.138 45.455 0.00 0.00 32.49 3.01
49 50 2.351726 GCCGTTGATGGTCTGTATGAAC 59.648 50.000 0.00 0.00 0.00 3.18
50 51 2.027653 TGCCGTTGATGGTCTGTATGAA 60.028 45.455 0.00 0.00 0.00 2.57
51 52 1.552792 TGCCGTTGATGGTCTGTATGA 59.447 47.619 0.00 0.00 0.00 2.15
52 53 1.935873 CTGCCGTTGATGGTCTGTATG 59.064 52.381 0.00 0.00 0.00 2.39
53 54 1.743772 GCTGCCGTTGATGGTCTGTAT 60.744 52.381 0.00 0.00 0.00 2.29
54 55 0.391130 GCTGCCGTTGATGGTCTGTA 60.391 55.000 0.00 0.00 0.00 2.74
55 56 1.672356 GCTGCCGTTGATGGTCTGT 60.672 57.895 0.00 0.00 0.00 3.41
56 57 2.401766 GGCTGCCGTTGATGGTCTG 61.402 63.158 1.35 0.00 0.00 3.51
57 58 2.045926 GGCTGCCGTTGATGGTCT 60.046 61.111 1.35 0.00 0.00 3.85
58 59 1.926511 CTTGGCTGCCGTTGATGGTC 61.927 60.000 14.98 0.00 0.00 4.02
59 60 1.973281 CTTGGCTGCCGTTGATGGT 60.973 57.895 14.98 0.00 0.00 3.55
60 61 2.879907 CTTGGCTGCCGTTGATGG 59.120 61.111 14.98 0.00 0.00 3.51
61 62 2.180017 GCTTGGCTGCCGTTGATG 59.820 61.111 14.98 0.00 0.00 3.07
62 63 3.434319 CGCTTGGCTGCCGTTGAT 61.434 61.111 14.98 0.00 0.00 2.57
65 66 4.722700 ATCCGCTTGGCTGCCGTT 62.723 61.111 14.98 0.00 0.00 4.44
66 67 4.722700 AATCCGCTTGGCTGCCGT 62.723 61.111 14.98 0.00 0.00 5.68
67 68 4.183686 CAATCCGCTTGGCTGCCG 62.184 66.667 14.98 1.19 0.00 5.69
68 69 1.669999 AATCAATCCGCTTGGCTGCC 61.670 55.000 12.87 12.87 35.43 4.85
69 70 0.174162 AAATCAATCCGCTTGGCTGC 59.826 50.000 0.00 0.00 35.43 5.25
70 71 2.533266 GAAAATCAATCCGCTTGGCTG 58.467 47.619 0.00 0.00 35.43 4.85
71 72 1.133025 CGAAAATCAATCCGCTTGGCT 59.867 47.619 0.00 0.00 35.43 4.75
72 73 1.132262 TCGAAAATCAATCCGCTTGGC 59.868 47.619 0.00 0.00 35.43 4.52
73 74 2.161410 TGTCGAAAATCAATCCGCTTGG 59.839 45.455 0.00 0.00 35.43 3.61
74 75 3.125146 TCTGTCGAAAATCAATCCGCTTG 59.875 43.478 0.00 0.00 36.09 4.01
75 76 3.334691 TCTGTCGAAAATCAATCCGCTT 58.665 40.909 0.00 0.00 0.00 4.68
76 77 2.972625 TCTGTCGAAAATCAATCCGCT 58.027 42.857 0.00 0.00 0.00 5.52
77 78 3.557595 AGATCTGTCGAAAATCAATCCGC 59.442 43.478 0.00 0.00 0.00 5.54
78 79 5.725110 AAGATCTGTCGAAAATCAATCCG 57.275 39.130 0.00 0.00 0.00 4.18
79 80 7.272084 CACAAAAGATCTGTCGAAAATCAATCC 59.728 37.037 0.00 0.00 0.00 3.01
80 81 7.272084 CCACAAAAGATCTGTCGAAAATCAATC 59.728 37.037 0.00 0.00 0.00 2.67
81 82 7.086376 CCACAAAAGATCTGTCGAAAATCAAT 58.914 34.615 0.00 0.00 0.00 2.57
82 83 6.437928 CCACAAAAGATCTGTCGAAAATCAA 58.562 36.000 0.00 0.00 0.00 2.57
83 84 5.048782 CCCACAAAAGATCTGTCGAAAATCA 60.049 40.000 0.00 0.00 0.00 2.57
84 85 5.181245 TCCCACAAAAGATCTGTCGAAAATC 59.819 40.000 0.00 0.00 0.00 2.17
85 86 5.070001 TCCCACAAAAGATCTGTCGAAAAT 58.930 37.500 0.00 0.00 0.00 1.82
86 87 4.456535 TCCCACAAAAGATCTGTCGAAAA 58.543 39.130 0.00 0.00 0.00 2.29
87 88 4.079980 TCCCACAAAAGATCTGTCGAAA 57.920 40.909 0.00 0.00 0.00 3.46
88 89 3.762407 TCCCACAAAAGATCTGTCGAA 57.238 42.857 0.00 0.00 0.00 3.71
89 90 3.762407 TTCCCACAAAAGATCTGTCGA 57.238 42.857 0.00 0.00 0.00 4.20
90 91 4.002982 TCATTCCCACAAAAGATCTGTCG 58.997 43.478 0.00 0.00 0.00 4.35
91 92 4.397417 CCTCATTCCCACAAAAGATCTGTC 59.603 45.833 0.00 0.00 0.00 3.51
92 93 4.043310 TCCTCATTCCCACAAAAGATCTGT 59.957 41.667 0.00 0.00 0.00 3.41
93 94 4.397417 GTCCTCATTCCCACAAAAGATCTG 59.603 45.833 0.00 0.00 0.00 2.90
94 95 4.290722 AGTCCTCATTCCCACAAAAGATCT 59.709 41.667 0.00 0.00 0.00 2.75
95 96 4.593956 AGTCCTCATTCCCACAAAAGATC 58.406 43.478 0.00 0.00 0.00 2.75
96 97 4.593956 GAGTCCTCATTCCCACAAAAGAT 58.406 43.478 0.00 0.00 0.00 2.40
97 98 3.557054 CGAGTCCTCATTCCCACAAAAGA 60.557 47.826 0.00 0.00 0.00 2.52
98 99 2.744202 CGAGTCCTCATTCCCACAAAAG 59.256 50.000 0.00 0.00 0.00 2.27
99 100 2.370519 TCGAGTCCTCATTCCCACAAAA 59.629 45.455 0.00 0.00 0.00 2.44
100 101 1.974957 TCGAGTCCTCATTCCCACAAA 59.025 47.619 0.00 0.00 0.00 2.83
101 102 1.275291 GTCGAGTCCTCATTCCCACAA 59.725 52.381 0.00 0.00 0.00 3.33
102 103 0.895530 GTCGAGTCCTCATTCCCACA 59.104 55.000 0.00 0.00 0.00 4.17
103 104 0.895530 TGTCGAGTCCTCATTCCCAC 59.104 55.000 0.00 0.00 0.00 4.61
104 105 1.482182 CATGTCGAGTCCTCATTCCCA 59.518 52.381 0.00 0.00 0.00 4.37
105 106 1.482593 ACATGTCGAGTCCTCATTCCC 59.517 52.381 0.00 0.00 0.00 3.97
106 107 2.969628 ACATGTCGAGTCCTCATTCC 57.030 50.000 0.00 0.00 0.00 3.01
107 108 6.561737 TCTATACATGTCGAGTCCTCATTC 57.438 41.667 0.00 0.00 0.00 2.67
108 109 6.071672 CCATCTATACATGTCGAGTCCTCATT 60.072 42.308 0.00 0.00 0.00 2.57
109 110 5.417266 CCATCTATACATGTCGAGTCCTCAT 59.583 44.000 0.00 0.00 0.00 2.90
110 111 4.762251 CCATCTATACATGTCGAGTCCTCA 59.238 45.833 0.00 0.00 0.00 3.86
111 112 5.004448 TCCATCTATACATGTCGAGTCCTC 58.996 45.833 0.00 0.00 0.00 3.71
112 113 4.986783 TCCATCTATACATGTCGAGTCCT 58.013 43.478 0.00 0.00 0.00 3.85
113 114 5.416013 TGATCCATCTATACATGTCGAGTCC 59.584 44.000 0.00 0.00 0.00 3.85
114 115 6.502136 TGATCCATCTATACATGTCGAGTC 57.498 41.667 0.00 0.00 0.00 3.36
115 116 8.759481 ATATGATCCATCTATACATGTCGAGT 57.241 34.615 0.00 0.00 0.00 4.18
128 129 9.352191 CCTTTCTTGAAGAAATATGATCCATCT 57.648 33.333 19.49 0.00 42.66 2.90
129 130 9.347240 TCCTTTCTTGAAGAAATATGATCCATC 57.653 33.333 19.49 0.00 42.66 3.51
130 131 9.878737 ATCCTTTCTTGAAGAAATATGATCCAT 57.121 29.630 19.49 1.78 42.66 3.41
139 140 9.972106 AGTCATCTTATCCTTTCTTGAAGAAAT 57.028 29.630 19.49 8.83 42.66 2.17
140 141 9.442047 GAGTCATCTTATCCTTTCTTGAAGAAA 57.558 33.333 18.32 18.32 41.51 2.52
141 142 7.761704 CGAGTCATCTTATCCTTTCTTGAAGAA 59.238 37.037 3.02 3.02 37.57 2.52
142 143 7.122799 TCGAGTCATCTTATCCTTTCTTGAAGA 59.877 37.037 0.00 0.00 37.57 2.87
143 144 7.261325 TCGAGTCATCTTATCCTTTCTTGAAG 58.739 38.462 0.00 0.00 35.02 3.02
144 145 7.170393 TCGAGTCATCTTATCCTTTCTTGAA 57.830 36.000 0.00 0.00 0.00 2.69
145 146 6.775594 TCGAGTCATCTTATCCTTTCTTGA 57.224 37.500 0.00 0.00 0.00 3.02
146 147 6.813649 TGTTCGAGTCATCTTATCCTTTCTTG 59.186 38.462 0.00 0.00 0.00 3.02
147 148 6.936279 TGTTCGAGTCATCTTATCCTTTCTT 58.064 36.000 0.00 0.00 0.00 2.52
148 149 6.378564 TCTGTTCGAGTCATCTTATCCTTTCT 59.621 38.462 0.00 0.00 0.00 2.52
149 150 6.565234 TCTGTTCGAGTCATCTTATCCTTTC 58.435 40.000 0.00 0.00 0.00 2.62
150 151 6.531503 TCTGTTCGAGTCATCTTATCCTTT 57.468 37.500 0.00 0.00 0.00 3.11
151 152 6.549364 AGATCTGTTCGAGTCATCTTATCCTT 59.451 38.462 0.00 0.00 0.00 3.36
152 153 6.016360 CAGATCTGTTCGAGTCATCTTATCCT 60.016 42.308 14.95 0.00 0.00 3.24
153 154 6.016693 TCAGATCTGTTCGAGTCATCTTATCC 60.017 42.308 21.92 0.00 0.00 2.59
154 155 6.855914 GTCAGATCTGTTCGAGTCATCTTATC 59.144 42.308 21.92 0.00 0.00 1.75
155 156 6.319911 TGTCAGATCTGTTCGAGTCATCTTAT 59.680 38.462 21.92 0.00 0.00 1.73
156 157 5.648092 TGTCAGATCTGTTCGAGTCATCTTA 59.352 40.000 21.92 0.00 0.00 2.10
157 158 4.460731 TGTCAGATCTGTTCGAGTCATCTT 59.539 41.667 21.92 0.00 0.00 2.40
158 159 4.013050 TGTCAGATCTGTTCGAGTCATCT 58.987 43.478 21.92 0.00 0.00 2.90
159 160 4.362932 TGTCAGATCTGTTCGAGTCATC 57.637 45.455 21.92 2.99 0.00 2.92
160 161 4.441217 CCATGTCAGATCTGTTCGAGTCAT 60.441 45.833 21.92 12.44 0.00 3.06
161 162 3.119352 CCATGTCAGATCTGTTCGAGTCA 60.119 47.826 21.92 10.98 0.00 3.41
162 163 3.119316 ACCATGTCAGATCTGTTCGAGTC 60.119 47.826 21.92 6.38 0.00 3.36
163 164 2.828520 ACCATGTCAGATCTGTTCGAGT 59.171 45.455 21.92 12.47 0.00 4.18
164 165 3.516981 ACCATGTCAGATCTGTTCGAG 57.483 47.619 21.92 11.88 0.00 4.04
165 166 4.402474 ACATACCATGTCAGATCTGTTCGA 59.598 41.667 21.92 0.00 39.92 3.71
166 167 4.505556 CACATACCATGTCAGATCTGTTCG 59.494 45.833 21.92 9.40 42.70 3.95
167 168 4.272018 GCACATACCATGTCAGATCTGTTC 59.728 45.833 21.92 15.99 42.70 3.18
168 169 4.194640 GCACATACCATGTCAGATCTGTT 58.805 43.478 21.92 6.22 42.70 3.16
169 170 3.432749 GGCACATACCATGTCAGATCTGT 60.433 47.826 21.92 4.60 42.70 3.41
170 171 3.136763 GGCACATACCATGTCAGATCTG 58.863 50.000 17.07 17.07 42.70 2.90
171 172 2.773661 TGGCACATACCATGTCAGATCT 59.226 45.455 0.00 0.00 42.70 2.75
172 173 3.198409 TGGCACATACCATGTCAGATC 57.802 47.619 0.00 0.00 42.70 2.75
187 188 1.864711 GCATGCATCATTGAATGGCAC 59.135 47.619 14.21 0.00 39.07 5.01
188 189 1.760029 AGCATGCATCATTGAATGGCA 59.240 42.857 21.98 10.67 39.07 4.92
189 190 2.526304 AGCATGCATCATTGAATGGC 57.474 45.000 21.98 2.48 39.07 4.40
190 191 3.561503 CGTAGCATGCATCATTGAATGG 58.438 45.455 21.98 0.00 39.07 3.16
207 208 2.349297 ACTTTCTCCAACGAGCGTAG 57.651 50.000 0.00 0.00 35.94 3.51
208 209 3.921119 TTACTTTCTCCAACGAGCGTA 57.079 42.857 0.00 0.00 35.94 4.42
209 210 2.806608 TTACTTTCTCCAACGAGCGT 57.193 45.000 0.00 0.00 35.94 5.07
210 211 4.394795 CATTTTACTTTCTCCAACGAGCG 58.605 43.478 0.00 0.00 35.94 5.03
211 212 4.159120 GCATTTTACTTTCTCCAACGAGC 58.841 43.478 0.00 0.00 35.94 5.03
212 213 4.151689 TCGCATTTTACTTTCTCCAACGAG 59.848 41.667 0.00 0.00 37.48 4.18
213 214 4.059511 TCGCATTTTACTTTCTCCAACGA 58.940 39.130 0.00 0.00 0.00 3.85
214 215 4.151689 TCTCGCATTTTACTTTCTCCAACG 59.848 41.667 0.00 0.00 0.00 4.10
215 216 5.607119 TCTCGCATTTTACTTTCTCCAAC 57.393 39.130 0.00 0.00 0.00 3.77
216 217 5.763204 ACTTCTCGCATTTTACTTTCTCCAA 59.237 36.000 0.00 0.00 0.00 3.53
217 218 5.305585 ACTTCTCGCATTTTACTTTCTCCA 58.694 37.500 0.00 0.00 0.00 3.86
218 219 5.864628 ACTTCTCGCATTTTACTTTCTCC 57.135 39.130 0.00 0.00 0.00 3.71
219 220 8.874816 AGATTACTTCTCGCATTTTACTTTCTC 58.125 33.333 0.00 0.00 0.00 2.87
220 221 8.779354 AGATTACTTCTCGCATTTTACTTTCT 57.221 30.769 0.00 0.00 0.00 2.52
221 222 9.827411 AAAGATTACTTCTCGCATTTTACTTTC 57.173 29.630 0.00 0.00 35.05 2.62
223 224 9.827411 GAAAAGATTACTTCTCGCATTTTACTT 57.173 29.630 0.00 0.00 35.05 2.24
224 225 8.451748 GGAAAAGATTACTTCTCGCATTTTACT 58.548 33.333 0.00 0.00 35.05 2.24
225 226 8.451748 AGGAAAAGATTACTTCTCGCATTTTAC 58.548 33.333 0.00 0.00 35.05 2.01
226 227 8.450964 CAGGAAAAGATTACTTCTCGCATTTTA 58.549 33.333 0.00 0.00 35.05 1.52
227 228 7.174946 TCAGGAAAAGATTACTTCTCGCATTTT 59.825 33.333 0.00 0.00 35.05 1.82
228 229 6.655003 TCAGGAAAAGATTACTTCTCGCATTT 59.345 34.615 0.00 0.00 35.05 2.32
229 230 6.173339 TCAGGAAAAGATTACTTCTCGCATT 58.827 36.000 0.00 0.00 35.05 3.56
230 231 5.734720 TCAGGAAAAGATTACTTCTCGCAT 58.265 37.500 0.00 0.00 35.05 4.73
231 232 5.147330 TCAGGAAAAGATTACTTCTCGCA 57.853 39.130 0.00 0.00 35.05 5.10
232 233 5.869888 TCTTCAGGAAAAGATTACTTCTCGC 59.130 40.000 0.00 0.00 35.05 5.03
233 234 7.891183 TTCTTCAGGAAAAGATTACTTCTCG 57.109 36.000 0.00 0.00 35.30 4.04
234 235 9.495572 TCTTTCTTCAGGAAAAGATTACTTCTC 57.504 33.333 0.00 0.00 42.52 2.87
235 236 9.278978 GTCTTTCTTCAGGAAAAGATTACTTCT 57.721 33.333 1.36 0.00 42.52 2.85
236 237 8.224437 CGTCTTTCTTCAGGAAAAGATTACTTC 58.776 37.037 1.36 0.00 42.52 3.01
237 238 7.931948 TCGTCTTTCTTCAGGAAAAGATTACTT 59.068 33.333 1.36 0.00 42.52 2.24
238 239 7.442656 TCGTCTTTCTTCAGGAAAAGATTACT 58.557 34.615 1.36 0.00 42.52 2.24
239 240 7.653767 TCGTCTTTCTTCAGGAAAAGATTAC 57.346 36.000 1.36 0.00 42.52 1.89
243 244 9.751542 GATATATCGTCTTTCTTCAGGAAAAGA 57.248 33.333 0.00 0.00 42.52 2.52
244 245 8.695284 CGATATATCGTCTTTCTTCAGGAAAAG 58.305 37.037 23.97 0.00 44.74 2.27
245 246 8.575565 CGATATATCGTCTTTCTTCAGGAAAA 57.424 34.615 23.97 0.00 44.74 2.29
265 266 9.613957 CGAGTCAGTGAAATTCTAATACGATAT 57.386 33.333 0.00 0.00 0.00 1.63
266 267 8.074370 CCGAGTCAGTGAAATTCTAATACGATA 58.926 37.037 0.00 0.00 0.00 2.92
267 268 6.918569 CCGAGTCAGTGAAATTCTAATACGAT 59.081 38.462 0.00 0.00 0.00 3.73
268 269 6.263344 CCGAGTCAGTGAAATTCTAATACGA 58.737 40.000 0.00 0.00 0.00 3.43
269 270 5.051641 GCCGAGTCAGTGAAATTCTAATACG 60.052 44.000 0.00 0.00 0.00 3.06
270 271 5.810587 TGCCGAGTCAGTGAAATTCTAATAC 59.189 40.000 0.00 0.00 0.00 1.89
271 272 5.810587 GTGCCGAGTCAGTGAAATTCTAATA 59.189 40.000 0.00 0.00 0.00 0.98
272 273 4.631813 GTGCCGAGTCAGTGAAATTCTAAT 59.368 41.667 0.00 0.00 0.00 1.73
273 274 3.994392 GTGCCGAGTCAGTGAAATTCTAA 59.006 43.478 0.00 0.00 0.00 2.10
429 443 2.775032 GAAACACGCGGCTGGGTAGA 62.775 60.000 15.72 0.00 39.58 2.59
458 472 3.441246 CGAGGCGCGTTTTTGTTTA 57.559 47.368 8.43 0.00 34.64 2.01
487 501 0.401356 TGAATTGCCTGGTCTGCTCA 59.599 50.000 0.00 0.00 0.00 4.26
519 534 2.699954 GAGCAAATTTCCTCCGTCAGA 58.300 47.619 0.00 0.00 0.00 3.27
525 540 1.135286 CAAGGCGAGCAAATTTCCTCC 60.135 52.381 3.50 0.00 0.00 4.30
625 1869 1.870055 GAAGGTGTCGTACGCTCCCA 61.870 60.000 11.24 1.47 0.00 4.37
680 1924 3.320541 GGATCTCATCCTGACGAACATCT 59.679 47.826 0.00 0.00 46.19 2.90
758 2002 1.517832 CCCGTGATGTCAGAGGGAC 59.482 63.158 14.89 0.00 43.64 4.46
759 2003 2.359169 GCCCGTGATGTCAGAGGGA 61.359 63.158 21.12 0.00 43.64 4.20
760 2004 1.043116 TAGCCCGTGATGTCAGAGGG 61.043 60.000 15.43 15.43 43.72 4.30
761 2005 0.387202 CTAGCCCGTGATGTCAGAGG 59.613 60.000 0.00 0.00 0.00 3.69
762 2006 1.066303 GTCTAGCCCGTGATGTCAGAG 59.934 57.143 0.00 0.00 0.00 3.35
763 2007 1.103803 GTCTAGCCCGTGATGTCAGA 58.896 55.000 0.00 0.00 0.00 3.27
823 2083 6.941857 TGCTGTGTGTATTTATAGTTGGAGA 58.058 36.000 0.00 0.00 0.00 3.71
875 2141 7.068593 AGGCAAGAAATCGAAATGAATGGATAA 59.931 33.333 0.00 0.00 0.00 1.75
887 2160 1.078709 CTCGCAGGCAAGAAATCGAA 58.921 50.000 0.00 0.00 0.00 3.71
987 7111 5.549347 CAGTTCCCCATCAGATCAGATAAG 58.451 45.833 0.00 0.00 0.00 1.73
1056 7180 3.827898 GACGACGCCTCCTCCCAG 61.828 72.222 0.00 0.00 0.00 4.45
1538 7697 3.624900 TCGCTACACGTACATCTTATGC 58.375 45.455 0.00 0.00 44.19 3.14
1553 7712 7.213151 GTGACAATTTGTTACGTATTTCGCTAC 59.787 37.037 8.47 0.00 44.19 3.58
1557 7716 7.285069 TCAGTGACAATTTGTTACGTATTTCG 58.715 34.615 16.05 3.99 41.14 3.46
1591 7800 5.983720 CAGTTATTTCCCTACACCTACATCG 59.016 44.000 0.00 0.00 0.00 3.84
1635 7844 6.573664 AAATGACGATTCACAGAAAATGGA 57.426 33.333 0.00 0.00 33.38 3.41
1643 7853 8.955061 AATTAACAGAAAATGACGATTCACAG 57.045 30.769 0.00 0.00 33.38 3.66
1666 7876 8.394971 TCACATCTCACAGTATGAAACAAAAT 57.605 30.769 0.00 0.00 39.69 1.82
1683 7893 3.601443 ACACCACTAGCTTCACATCTC 57.399 47.619 0.00 0.00 0.00 2.75
1759 7970 5.851720 TGCAATTTTTGTTATGCTTGAGGA 58.148 33.333 0.00 0.00 39.49 3.71
1772 7983 8.792538 GTTCTAAAGATCTCGATGCAATTTTTG 58.207 33.333 0.00 0.00 0.00 2.44
1780 7991 4.433615 TGGTGTTCTAAAGATCTCGATGC 58.566 43.478 0.00 0.00 0.00 3.91
1785 7996 4.142881 GCCGTTTGGTGTTCTAAAGATCTC 60.143 45.833 0.00 0.00 37.67 2.75
1791 8002 1.677052 GTGGCCGTTTGGTGTTCTAAA 59.323 47.619 0.00 0.00 37.67 1.85
1797 8008 1.228033 GGTAGTGGCCGTTTGGTGT 60.228 57.895 0.00 0.00 37.67 4.16
1807 8018 1.090052 GTTCTGGCGATGGTAGTGGC 61.090 60.000 0.00 0.00 0.00 5.01
1890 8101 2.079158 CATGTGCACGAAGATTCCAGT 58.921 47.619 13.13 0.00 0.00 4.00
1914 8127 2.292267 GCTACATGGTGATGGTCCTTG 58.708 52.381 0.00 0.00 36.56 3.61
1923 8137 4.188462 CGAAAACTATGGCTACATGGTGA 58.812 43.478 0.00 0.00 46.53 4.02
1926 8140 2.290641 GGCGAAAACTATGGCTACATGG 59.709 50.000 0.00 0.00 40.98 3.66
1946 8160 4.770795 AGATCTATTCAAGGGTTCAACGG 58.229 43.478 0.00 0.00 0.00 4.44
1975 8189 4.421058 CGATGTCGAGATTTGGTGTTAGA 58.579 43.478 0.00 0.00 43.02 2.10
1983 8197 0.578683 ATGCGCGATGTCGAGATTTG 59.421 50.000 12.10 0.00 41.67 2.32
1992 8206 2.176546 GTTGTGCATGCGCGATGT 59.823 55.556 23.50 0.00 42.97 3.06
1995 8209 3.776849 CTCGTTGTGCATGCGCGA 61.777 61.111 25.08 21.42 42.97 5.87
1999 8213 0.387239 GGGTTTCTCGTTGTGCATGC 60.387 55.000 11.82 11.82 0.00 4.06
2001 8215 2.812011 GTTAGGGTTTCTCGTTGTGCAT 59.188 45.455 0.00 0.00 0.00 3.96
2007 8221 2.029560 GTCGAGGTTAGGGTTTCTCGTT 60.030 50.000 10.63 0.00 46.17 3.85
2027 8241 4.699522 GCCGTCTCTTTGGGGCGT 62.700 66.667 0.00 0.00 35.59 5.68
2030 8244 2.045926 CCTGCCGTCTCTTTGGGG 60.046 66.667 0.00 0.00 0.00 4.96
2036 8250 1.313812 CGTAGGTTCCTGCCGTCTCT 61.314 60.000 1.12 0.00 0.00 3.10
2062 8276 2.894765 TGTCTGGACATAGTTGACGGAA 59.105 45.455 0.00 0.00 36.21 4.30
2109 8323 4.665833 TCTTCTTCGACTTTGTCTTCCA 57.334 40.909 0.00 0.00 0.00 3.53
2120 8334 2.066262 TGTCGGCATTTCTTCTTCGAC 58.934 47.619 0.00 0.00 44.63 4.20
2153 8367 0.459585 TTTAGTCCTCGTGGATGCGC 60.460 55.000 9.83 0.00 45.29 6.09
2202 8416 2.104170 GAGGGAAATCTCGACACCTCT 58.896 52.381 0.00 0.00 40.93 3.69
2207 8421 1.327690 CGGGGAGGGAAATCTCGACA 61.328 60.000 0.00 0.00 34.74 4.35
2212 8426 0.691413 GGAGACGGGGAGGGAAATCT 60.691 60.000 0.00 0.00 0.00 2.40
2250 8464 0.253044 TGGCTAGCGCAAATTCTCCT 59.747 50.000 11.47 0.00 38.10 3.69
2256 8470 0.882042 CCTCGATGGCTAGCGCAAAT 60.882 55.000 11.47 0.00 38.10 2.32
2262 8476 1.369321 CTTCCCCTCGATGGCTAGC 59.631 63.158 6.04 6.04 0.00 3.42
2269 8483 0.976073 TTTCTCCGCTTCCCCTCGAT 60.976 55.000 0.00 0.00 0.00 3.59
2271 8485 1.019805 GTTTTCTCCGCTTCCCCTCG 61.020 60.000 0.00 0.00 0.00 4.63
2282 8496 1.892209 TTCCTCCAAGCGTTTTCTCC 58.108 50.000 0.00 0.00 0.00 3.71
2286 8500 5.585820 TTAACTTTTCCTCCAAGCGTTTT 57.414 34.783 0.00 0.00 0.00 2.43
2291 8505 6.863645 GTCAGAAATTAACTTTTCCTCCAAGC 59.136 38.462 0.00 0.00 36.47 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.