Multiple sequence alignment - TraesCS3B01G356100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G356100 | chr3B | 100.000 | 2324 | 0 | 0 | 1 | 2324 | 566476980 | 566474657 | 0.000000e+00 | 4292.0 |
1 | TraesCS3B01G356100 | chr3B | 88.931 | 1310 | 79 | 41 | 318 | 1598 | 566538468 | 566537196 | 0.000000e+00 | 1555.0 |
2 | TraesCS3B01G356100 | chr3A | 86.272 | 1792 | 175 | 31 | 594 | 2324 | 572039443 | 572037662 | 0.000000e+00 | 1881.0 |
3 | TraesCS3B01G356100 | chr3A | 87.901 | 1372 | 72 | 43 | 314 | 1643 | 572044545 | 572043226 | 0.000000e+00 | 1528.0 |
4 | TraesCS3B01G356100 | chr3A | 85.714 | 245 | 18 | 8 | 315 | 546 | 572039698 | 572039458 | 2.310000e-60 | 243.0 |
5 | TraesCS3B01G356100 | chr3A | 75.849 | 265 | 52 | 7 | 1944 | 2207 | 658731262 | 658731515 | 8.720000e-25 | 124.0 |
6 | TraesCS3B01G356100 | chr3D | 90.730 | 1370 | 62 | 30 | 275 | 1612 | 433513129 | 433511793 | 0.000000e+00 | 1766.0 |
7 | TraesCS3B01G356100 | chr3D | 90.385 | 1196 | 65 | 27 | 602 | 1780 | 433504175 | 433503013 | 0.000000e+00 | 1526.0 |
8 | TraesCS3B01G356100 | chr3D | 87.050 | 278 | 19 | 9 | 315 | 579 | 433505694 | 433505421 | 4.850000e-77 | 298.0 |
9 | TraesCS3B01G356100 | chr3D | 88.710 | 124 | 9 | 3 | 1522 | 1643 | 433511832 | 433511712 | 1.860000e-31 | 147.0 |
10 | TraesCS3B01G356100 | chr6A | 78.846 | 520 | 91 | 13 | 1716 | 2227 | 554782259 | 554781751 | 1.330000e-87 | 333.0 |
11 | TraesCS3B01G356100 | chr7D | 78.486 | 502 | 85 | 20 | 1705 | 2200 | 29728500 | 29728984 | 8.070000e-80 | 307.0 |
12 | TraesCS3B01G356100 | chr7D | 77.914 | 489 | 93 | 13 | 1716 | 2196 | 403643556 | 403644037 | 8.120000e-75 | 291.0 |
13 | TraesCS3B01G356100 | chr6B | 76.891 | 476 | 94 | 13 | 1739 | 2207 | 493355694 | 493356160 | 2.960000e-64 | 255.0 |
14 | TraesCS3B01G356100 | chr6D | 79.456 | 331 | 63 | 5 | 1747 | 2072 | 461867089 | 461867419 | 1.800000e-56 | 230.0 |
15 | TraesCS3B01G356100 | chr1D | 81.319 | 273 | 45 | 6 | 1727 | 1995 | 365430492 | 365430222 | 1.400000e-52 | 217.0 |
16 | TraesCS3B01G356100 | chr2D | 77.225 | 382 | 68 | 12 | 1870 | 2244 | 99724301 | 99724670 | 3.030000e-49 | 206.0 |
17 | TraesCS3B01G356100 | chr2D | 95.652 | 46 | 1 | 1 | 2163 | 2207 | 13928398 | 13928443 | 3.200000e-09 | 73.1 |
18 | TraesCS3B01G356100 | chr4A | 76.946 | 334 | 69 | 7 | 1764 | 2092 | 530764530 | 530764200 | 1.420000e-42 | 183.0 |
19 | TraesCS3B01G356100 | chr4A | 74.654 | 434 | 98 | 11 | 1704 | 2130 | 584075370 | 584075798 | 5.100000e-42 | 182.0 |
20 | TraesCS3B01G356100 | chr7A | 75.853 | 381 | 75 | 13 | 1819 | 2194 | 653998124 | 653997756 | 6.600000e-41 | 178.0 |
21 | TraesCS3B01G356100 | chr4D | 78.926 | 242 | 40 | 8 | 1899 | 2136 | 83281515 | 83281749 | 1.110000e-33 | 154.0 |
22 | TraesCS3B01G356100 | chr1B | 74.734 | 376 | 73 | 14 | 1865 | 2236 | 487427807 | 487428164 | 5.170000e-32 | 148.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G356100 | chr3B | 566474657 | 566476980 | 2323 | True | 4292.000000 | 4292 | 100.0000 | 1 | 2324 | 1 | chr3B.!!$R1 | 2323 |
1 | TraesCS3B01G356100 | chr3B | 566537196 | 566538468 | 1272 | True | 1555.000000 | 1555 | 88.9310 | 318 | 1598 | 1 | chr3B.!!$R2 | 1280 |
2 | TraesCS3B01G356100 | chr3A | 572037662 | 572044545 | 6883 | True | 1217.333333 | 1881 | 86.6290 | 314 | 2324 | 3 | chr3A.!!$R1 | 2010 |
3 | TraesCS3B01G356100 | chr3D | 433511712 | 433513129 | 1417 | True | 956.500000 | 1766 | 89.7200 | 275 | 1643 | 2 | chr3D.!!$R2 | 1368 |
4 | TraesCS3B01G356100 | chr3D | 433503013 | 433505694 | 2681 | True | 912.000000 | 1526 | 88.7175 | 315 | 1780 | 2 | chr3D.!!$R1 | 1465 |
5 | TraesCS3B01G356100 | chr6A | 554781751 | 554782259 | 508 | True | 333.000000 | 333 | 78.8460 | 1716 | 2227 | 1 | chr6A.!!$R1 | 511 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
218 | 219 | 0.042708 | GATGCATGCTACGCTCGTTG | 60.043 | 55.0 | 20.33 | 0.0 | 0.0 | 4.1 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1999 | 8213 | 0.387239 | GGGTTTCTCGTTGTGCATGC | 60.387 | 55.0 | 11.82 | 11.82 | 0.0 | 4.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 5.838531 | ATCGAAACTTCTTCTATCTCGGT | 57.161 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
23 | 24 | 5.640189 | TCGAAACTTCTTCTATCTCGGTT | 57.360 | 39.130 | 0.00 | 0.00 | 0.00 | 4.44 |
24 | 25 | 5.399858 | TCGAAACTTCTTCTATCTCGGTTG | 58.600 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
25 | 26 | 5.048224 | TCGAAACTTCTTCTATCTCGGTTGT | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
26 | 27 | 5.286558 | CGAAACTTCTTCTATCTCGGTTGTC | 59.713 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
27 | 28 | 5.723672 | AACTTCTTCTATCTCGGTTGTCA | 57.276 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
28 | 29 | 5.723672 | ACTTCTTCTATCTCGGTTGTCAA | 57.276 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
29 | 30 | 6.097915 | ACTTCTTCTATCTCGGTTGTCAAA | 57.902 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
30 | 31 | 6.159988 | ACTTCTTCTATCTCGGTTGTCAAAG | 58.840 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
31 | 32 | 5.977489 | TCTTCTATCTCGGTTGTCAAAGA | 57.023 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
32 | 33 | 5.955488 | TCTTCTATCTCGGTTGTCAAAGAG | 58.045 | 41.667 | 11.22 | 11.22 | 0.00 | 2.85 |
33 | 34 | 5.710567 | TCTTCTATCTCGGTTGTCAAAGAGA | 59.289 | 40.000 | 18.60 | 18.60 | 42.93 | 3.10 |
35 | 36 | 6.531503 | TCTATCTCGGTTGTCAAAGAGATT | 57.468 | 37.500 | 26.50 | 16.81 | 45.10 | 2.40 |
36 | 37 | 7.640597 | TCTATCTCGGTTGTCAAAGAGATTA | 57.359 | 36.000 | 26.50 | 17.93 | 45.10 | 1.75 |
37 | 38 | 8.239038 | TCTATCTCGGTTGTCAAAGAGATTAT | 57.761 | 34.615 | 26.50 | 14.62 | 45.10 | 1.28 |
38 | 39 | 8.138074 | TCTATCTCGGTTGTCAAAGAGATTATG | 58.862 | 37.037 | 26.50 | 19.90 | 45.10 | 1.90 |
39 | 40 | 6.037786 | TCTCGGTTGTCAAAGAGATTATGT | 57.962 | 37.500 | 14.54 | 0.00 | 35.13 | 2.29 |
40 | 41 | 5.869344 | TCTCGGTTGTCAAAGAGATTATGTG | 59.131 | 40.000 | 14.54 | 0.00 | 35.13 | 3.21 |
41 | 42 | 5.789521 | TCGGTTGTCAAAGAGATTATGTGA | 58.210 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
42 | 43 | 5.869344 | TCGGTTGTCAAAGAGATTATGTGAG | 59.131 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
43 | 44 | 5.446473 | CGGTTGTCAAAGAGATTATGTGAGC | 60.446 | 44.000 | 0.00 | 0.00 | 0.00 | 4.26 |
44 | 45 | 5.446473 | GGTTGTCAAAGAGATTATGTGAGCG | 60.446 | 44.000 | 0.00 | 0.00 | 0.00 | 5.03 |
45 | 46 | 3.618594 | TGTCAAAGAGATTATGTGAGCGC | 59.381 | 43.478 | 0.00 | 0.00 | 0.00 | 5.92 |
46 | 47 | 3.001736 | GTCAAAGAGATTATGTGAGCGCC | 59.998 | 47.826 | 2.29 | 0.00 | 0.00 | 6.53 |
47 | 48 | 2.246719 | AAGAGATTATGTGAGCGCCC | 57.753 | 50.000 | 2.29 | 0.00 | 0.00 | 6.13 |
48 | 49 | 1.123077 | AGAGATTATGTGAGCGCCCA | 58.877 | 50.000 | 2.29 | 0.00 | 0.00 | 5.36 |
49 | 50 | 1.069823 | AGAGATTATGTGAGCGCCCAG | 59.930 | 52.381 | 2.29 | 0.00 | 0.00 | 4.45 |
50 | 51 | 0.833287 | AGATTATGTGAGCGCCCAGT | 59.167 | 50.000 | 2.29 | 0.00 | 0.00 | 4.00 |
51 | 52 | 1.210478 | AGATTATGTGAGCGCCCAGTT | 59.790 | 47.619 | 2.29 | 0.00 | 0.00 | 3.16 |
52 | 53 | 1.599542 | GATTATGTGAGCGCCCAGTTC | 59.400 | 52.381 | 2.29 | 0.00 | 0.00 | 3.01 |
53 | 54 | 0.323302 | TTATGTGAGCGCCCAGTTCA | 59.677 | 50.000 | 2.29 | 0.00 | 37.76 | 3.18 |
54 | 55 | 0.541392 | TATGTGAGCGCCCAGTTCAT | 59.459 | 50.000 | 2.29 | 0.56 | 42.02 | 2.57 |
55 | 56 | 0.541392 | ATGTGAGCGCCCAGTTCATA | 59.459 | 50.000 | 2.29 | 0.00 | 42.02 | 2.15 |
56 | 57 | 0.391130 | TGTGAGCGCCCAGTTCATAC | 60.391 | 55.000 | 2.29 | 0.00 | 42.02 | 2.39 |
57 | 58 | 0.391130 | GTGAGCGCCCAGTTCATACA | 60.391 | 55.000 | 2.29 | 0.00 | 42.02 | 2.29 |
58 | 59 | 0.108186 | TGAGCGCCCAGTTCATACAG | 60.108 | 55.000 | 2.29 | 0.00 | 35.09 | 2.74 |
59 | 60 | 0.175760 | GAGCGCCCAGTTCATACAGA | 59.824 | 55.000 | 2.29 | 0.00 | 0.00 | 3.41 |
60 | 61 | 0.108138 | AGCGCCCAGTTCATACAGAC | 60.108 | 55.000 | 2.29 | 0.00 | 0.00 | 3.51 |
61 | 62 | 1.090052 | GCGCCCAGTTCATACAGACC | 61.090 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
62 | 63 | 0.249120 | CGCCCAGTTCATACAGACCA | 59.751 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
63 | 64 | 1.134401 | CGCCCAGTTCATACAGACCAT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.55 |
64 | 65 | 2.565841 | GCCCAGTTCATACAGACCATC | 58.434 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
65 | 66 | 2.092968 | GCCCAGTTCATACAGACCATCA | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
66 | 67 | 3.622206 | GCCCAGTTCATACAGACCATCAA | 60.622 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
67 | 68 | 3.941483 | CCCAGTTCATACAGACCATCAAC | 59.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
68 | 69 | 3.618594 | CCAGTTCATACAGACCATCAACG | 59.381 | 47.826 | 0.00 | 0.00 | 0.00 | 4.10 |
69 | 70 | 3.618594 | CAGTTCATACAGACCATCAACGG | 59.381 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
70 | 71 | 2.309528 | TCATACAGACCATCAACGGC | 57.690 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
71 | 72 | 1.552792 | TCATACAGACCATCAACGGCA | 59.447 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
72 | 73 | 1.935873 | CATACAGACCATCAACGGCAG | 59.064 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
73 | 74 | 0.391130 | TACAGACCATCAACGGCAGC | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
74 | 75 | 2.045926 | AGACCATCAACGGCAGCC | 60.046 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
75 | 76 | 2.359850 | GACCATCAACGGCAGCCA | 60.360 | 61.111 | 13.30 | 0.00 | 0.00 | 4.75 |
76 | 77 | 1.971167 | GACCATCAACGGCAGCCAA | 60.971 | 57.895 | 13.30 | 0.00 | 0.00 | 4.52 |
77 | 78 | 1.926511 | GACCATCAACGGCAGCCAAG | 61.927 | 60.000 | 13.30 | 0.00 | 0.00 | 3.61 |
78 | 79 | 2.180017 | CATCAACGGCAGCCAAGC | 59.820 | 61.111 | 13.30 | 0.00 | 0.00 | 4.01 |
79 | 80 | 3.434319 | ATCAACGGCAGCCAAGCG | 61.434 | 61.111 | 13.30 | 0.00 | 34.64 | 4.68 |
82 | 83 | 4.722700 | AACGGCAGCCAAGCGGAT | 62.723 | 61.111 | 13.30 | 0.00 | 38.12 | 4.18 |
83 | 84 | 4.722700 | ACGGCAGCCAAGCGGATT | 62.723 | 61.111 | 13.30 | 0.00 | 38.12 | 3.01 |
84 | 85 | 4.183686 | CGGCAGCCAAGCGGATTG | 62.184 | 66.667 | 13.30 | 0.00 | 37.03 | 2.67 |
85 | 86 | 2.751436 | GGCAGCCAAGCGGATTGA | 60.751 | 61.111 | 6.55 | 0.00 | 41.83 | 2.57 |
86 | 87 | 2.123428 | GGCAGCCAAGCGGATTGAT | 61.123 | 57.895 | 6.55 | 0.00 | 41.83 | 2.57 |
87 | 88 | 1.669999 | GGCAGCCAAGCGGATTGATT | 61.670 | 55.000 | 6.55 | 0.00 | 41.83 | 2.57 |
88 | 89 | 0.174162 | GCAGCCAAGCGGATTGATTT | 59.826 | 50.000 | 7.69 | 0.00 | 41.83 | 2.17 |
89 | 90 | 1.404583 | GCAGCCAAGCGGATTGATTTT | 60.405 | 47.619 | 7.69 | 0.00 | 41.83 | 1.82 |
90 | 91 | 2.533266 | CAGCCAAGCGGATTGATTTTC | 58.467 | 47.619 | 7.69 | 0.00 | 41.83 | 2.29 |
91 | 92 | 1.133025 | AGCCAAGCGGATTGATTTTCG | 59.867 | 47.619 | 7.69 | 0.00 | 41.83 | 3.46 |
92 | 93 | 1.132262 | GCCAAGCGGATTGATTTTCGA | 59.868 | 47.619 | 7.69 | 0.00 | 41.83 | 3.71 |
93 | 94 | 2.785679 | CCAAGCGGATTGATTTTCGAC | 58.214 | 47.619 | 7.69 | 0.00 | 41.83 | 4.20 |
94 | 95 | 2.161410 | CCAAGCGGATTGATTTTCGACA | 59.839 | 45.455 | 7.69 | 0.00 | 41.83 | 4.35 |
95 | 96 | 3.419915 | CAAGCGGATTGATTTTCGACAG | 58.580 | 45.455 | 0.00 | 0.00 | 41.83 | 3.51 |
96 | 97 | 2.972625 | AGCGGATTGATTTTCGACAGA | 58.027 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
97 | 98 | 3.535561 | AGCGGATTGATTTTCGACAGAT | 58.464 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
98 | 99 | 3.557595 | AGCGGATTGATTTTCGACAGATC | 59.442 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
99 | 100 | 3.557595 | GCGGATTGATTTTCGACAGATCT | 59.442 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
100 | 101 | 4.034510 | GCGGATTGATTTTCGACAGATCTT | 59.965 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
101 | 102 | 5.447818 | GCGGATTGATTTTCGACAGATCTTT | 60.448 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
102 | 103 | 6.546395 | CGGATTGATTTTCGACAGATCTTTT | 58.454 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
103 | 104 | 6.467047 | CGGATTGATTTTCGACAGATCTTTTG | 59.533 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
104 | 105 | 7.308435 | GGATTGATTTTCGACAGATCTTTTGT | 58.692 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
105 | 106 | 7.272084 | GGATTGATTTTCGACAGATCTTTTGTG | 59.728 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
106 | 107 | 6.000891 | TGATTTTCGACAGATCTTTTGTGG | 57.999 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
107 | 108 | 4.829064 | TTTTCGACAGATCTTTTGTGGG | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 4.61 |
108 | 109 | 3.762407 | TTCGACAGATCTTTTGTGGGA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 4.37 |
109 | 110 | 3.762407 | TCGACAGATCTTTTGTGGGAA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 3.97 |
110 | 111 | 4.286297 | TCGACAGATCTTTTGTGGGAAT | 57.714 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
111 | 112 | 4.002982 | TCGACAGATCTTTTGTGGGAATG | 58.997 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
112 | 113 | 4.002982 | CGACAGATCTTTTGTGGGAATGA | 58.997 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
113 | 114 | 4.093998 | CGACAGATCTTTTGTGGGAATGAG | 59.906 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
114 | 115 | 4.338879 | ACAGATCTTTTGTGGGAATGAGG | 58.661 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
115 | 116 | 4.043310 | ACAGATCTTTTGTGGGAATGAGGA | 59.957 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
116 | 117 | 4.397417 | CAGATCTTTTGTGGGAATGAGGAC | 59.603 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
117 | 118 | 4.290722 | AGATCTTTTGTGGGAATGAGGACT | 59.709 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
118 | 119 | 4.021102 | TCTTTTGTGGGAATGAGGACTC | 57.979 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
119 | 120 | 2.472695 | TTTGTGGGAATGAGGACTCG | 57.527 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
120 | 121 | 1.639722 | TTGTGGGAATGAGGACTCGA | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
121 | 122 | 0.895530 | TGTGGGAATGAGGACTCGAC | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
122 | 123 | 0.895530 | GTGGGAATGAGGACTCGACA | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
123 | 124 | 1.482593 | GTGGGAATGAGGACTCGACAT | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
124 | 125 | 1.482182 | TGGGAATGAGGACTCGACATG | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
125 | 126 | 1.482593 | GGGAATGAGGACTCGACATGT | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
126 | 127 | 2.693591 | GGGAATGAGGACTCGACATGTA | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
127 | 128 | 3.322254 | GGGAATGAGGACTCGACATGTAT | 59.678 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
128 | 129 | 4.523173 | GGGAATGAGGACTCGACATGTATA | 59.477 | 45.833 | 0.00 | 0.00 | 0.00 | 1.47 |
129 | 130 | 5.336055 | GGGAATGAGGACTCGACATGTATAG | 60.336 | 48.000 | 0.00 | 1.40 | 0.00 | 1.31 |
130 | 131 | 5.473846 | GGAATGAGGACTCGACATGTATAGA | 59.526 | 44.000 | 12.61 | 6.06 | 0.00 | 1.98 |
131 | 132 | 6.151985 | GGAATGAGGACTCGACATGTATAGAT | 59.848 | 42.308 | 12.61 | 0.58 | 0.00 | 1.98 |
132 | 133 | 5.948992 | TGAGGACTCGACATGTATAGATG | 57.051 | 43.478 | 8.27 | 8.27 | 0.00 | 2.90 |
133 | 134 | 4.762251 | TGAGGACTCGACATGTATAGATGG | 59.238 | 45.833 | 13.91 | 0.00 | 0.00 | 3.51 |
134 | 135 | 4.986783 | AGGACTCGACATGTATAGATGGA | 58.013 | 43.478 | 13.91 | 2.44 | 0.00 | 3.41 |
135 | 136 | 5.575157 | AGGACTCGACATGTATAGATGGAT | 58.425 | 41.667 | 13.91 | 0.00 | 0.00 | 3.41 |
136 | 137 | 5.650266 | AGGACTCGACATGTATAGATGGATC | 59.350 | 44.000 | 13.91 | 3.18 | 0.00 | 3.36 |
137 | 138 | 5.416013 | GGACTCGACATGTATAGATGGATCA | 59.584 | 44.000 | 13.91 | 0.00 | 0.00 | 2.92 |
138 | 139 | 6.096141 | GGACTCGACATGTATAGATGGATCAT | 59.904 | 42.308 | 13.91 | 0.00 | 0.00 | 2.45 |
139 | 140 | 7.283354 | GGACTCGACATGTATAGATGGATCATA | 59.717 | 40.741 | 13.91 | 0.00 | 0.00 | 2.15 |
140 | 141 | 8.759481 | ACTCGACATGTATAGATGGATCATAT | 57.241 | 34.615 | 13.91 | 0.00 | 0.00 | 1.78 |
141 | 142 | 9.194972 | ACTCGACATGTATAGATGGATCATATT | 57.805 | 33.333 | 13.91 | 0.00 | 0.00 | 1.28 |
154 | 155 | 9.352191 | AGATGGATCATATTTCTTCAAGAAAGG | 57.648 | 33.333 | 17.46 | 9.92 | 46.15 | 3.11 |
155 | 156 | 9.347240 | GATGGATCATATTTCTTCAAGAAAGGA | 57.653 | 33.333 | 17.46 | 14.26 | 46.15 | 3.36 |
156 | 157 | 9.878737 | ATGGATCATATTTCTTCAAGAAAGGAT | 57.121 | 29.630 | 17.46 | 17.62 | 46.15 | 3.24 |
165 | 166 | 9.972106 | ATTTCTTCAAGAAAGGATAAGATGACT | 57.028 | 29.630 | 17.46 | 0.00 | 46.15 | 3.41 |
166 | 167 | 9.442047 | TTTCTTCAAGAAAGGATAAGATGACTC | 57.558 | 33.333 | 8.60 | 0.00 | 39.13 | 3.36 |
167 | 168 | 7.261325 | TCTTCAAGAAAGGATAAGATGACTCG | 58.739 | 38.462 | 0.00 | 0.00 | 35.54 | 4.18 |
168 | 169 | 6.775594 | TCAAGAAAGGATAAGATGACTCGA | 57.224 | 37.500 | 0.00 | 0.00 | 0.00 | 4.04 |
169 | 170 | 7.170393 | TCAAGAAAGGATAAGATGACTCGAA | 57.830 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
170 | 171 | 7.036220 | TCAAGAAAGGATAAGATGACTCGAAC | 58.964 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
171 | 172 | 6.531503 | AGAAAGGATAAGATGACTCGAACA | 57.468 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
172 | 173 | 6.568869 | AGAAAGGATAAGATGACTCGAACAG | 58.431 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
173 | 174 | 6.378564 | AGAAAGGATAAGATGACTCGAACAGA | 59.621 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
174 | 175 | 6.723298 | AAGGATAAGATGACTCGAACAGAT | 57.277 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
175 | 176 | 6.325919 | AGGATAAGATGACTCGAACAGATC | 57.674 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
176 | 177 | 6.068010 | AGGATAAGATGACTCGAACAGATCT | 58.932 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
177 | 178 | 6.016360 | AGGATAAGATGACTCGAACAGATCTG | 60.016 | 42.308 | 21.37 | 21.37 | 0.00 | 2.90 |
178 | 179 | 6.016693 | GGATAAGATGACTCGAACAGATCTGA | 60.017 | 42.308 | 29.27 | 5.67 | 0.00 | 3.27 |
179 | 180 | 4.630894 | AGATGACTCGAACAGATCTGAC | 57.369 | 45.455 | 29.27 | 19.33 | 0.00 | 3.51 |
180 | 181 | 4.013050 | AGATGACTCGAACAGATCTGACA | 58.987 | 43.478 | 29.27 | 15.21 | 0.00 | 3.58 |
181 | 182 | 4.644234 | AGATGACTCGAACAGATCTGACAT | 59.356 | 41.667 | 29.27 | 18.45 | 0.00 | 3.06 |
182 | 183 | 4.102035 | TGACTCGAACAGATCTGACATG | 57.898 | 45.455 | 29.27 | 14.73 | 0.00 | 3.21 |
183 | 184 | 3.119352 | TGACTCGAACAGATCTGACATGG | 60.119 | 47.826 | 29.27 | 16.52 | 0.00 | 3.66 |
184 | 185 | 2.828520 | ACTCGAACAGATCTGACATGGT | 59.171 | 45.455 | 29.27 | 17.10 | 0.00 | 3.55 |
185 | 186 | 4.017126 | ACTCGAACAGATCTGACATGGTA | 58.983 | 43.478 | 29.27 | 6.68 | 0.00 | 3.25 |
186 | 187 | 4.646945 | ACTCGAACAGATCTGACATGGTAT | 59.353 | 41.667 | 29.27 | 0.63 | 0.00 | 2.73 |
187 | 188 | 4.936891 | TCGAACAGATCTGACATGGTATG | 58.063 | 43.478 | 29.27 | 7.91 | 0.00 | 2.39 |
189 | 190 | 4.505556 | CGAACAGATCTGACATGGTATGTG | 59.494 | 45.833 | 29.27 | 0.00 | 45.03 | 3.21 |
190 | 191 | 3.801698 | ACAGATCTGACATGGTATGTGC | 58.198 | 45.455 | 29.27 | 0.00 | 45.03 | 4.57 |
191 | 192 | 3.136763 | CAGATCTGACATGGTATGTGCC | 58.863 | 50.000 | 18.34 | 0.00 | 45.03 | 5.01 |
192 | 193 | 2.773661 | AGATCTGACATGGTATGTGCCA | 59.226 | 45.455 | 0.00 | 0.00 | 45.03 | 4.92 |
194 | 195 | 3.650281 | TCTGACATGGTATGTGCCATT | 57.350 | 42.857 | 0.00 | 0.00 | 46.33 | 3.16 |
195 | 196 | 3.544684 | TCTGACATGGTATGTGCCATTC | 58.455 | 45.455 | 0.00 | 3.46 | 46.33 | 2.67 |
196 | 197 | 3.054508 | TCTGACATGGTATGTGCCATTCA | 60.055 | 43.478 | 0.00 | 7.17 | 46.33 | 2.57 |
197 | 198 | 3.694926 | TGACATGGTATGTGCCATTCAA | 58.305 | 40.909 | 0.00 | 0.00 | 46.33 | 2.69 |
198 | 199 | 4.279982 | TGACATGGTATGTGCCATTCAAT | 58.720 | 39.130 | 0.00 | 0.00 | 46.33 | 2.57 |
199 | 200 | 4.098196 | TGACATGGTATGTGCCATTCAATG | 59.902 | 41.667 | 0.00 | 0.00 | 46.33 | 2.82 |
200 | 201 | 4.279982 | ACATGGTATGTGCCATTCAATGA | 58.720 | 39.130 | 0.00 | 0.00 | 46.33 | 2.57 |
201 | 202 | 4.897076 | ACATGGTATGTGCCATTCAATGAT | 59.103 | 37.500 | 0.00 | 0.00 | 46.33 | 2.45 |
202 | 203 | 4.922471 | TGGTATGTGCCATTCAATGATG | 57.078 | 40.909 | 0.00 | 0.00 | 32.81 | 3.07 |
203 | 204 | 3.068448 | TGGTATGTGCCATTCAATGATGC | 59.932 | 43.478 | 0.00 | 0.00 | 32.81 | 3.91 |
204 | 205 | 3.068448 | GGTATGTGCCATTCAATGATGCA | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
205 | 206 | 4.262292 | GGTATGTGCCATTCAATGATGCAT | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 3.96 |
206 | 207 | 3.172229 | TGTGCCATTCAATGATGCATG | 57.828 | 42.857 | 2.46 | 0.00 | 30.99 | 4.06 |
207 | 208 | 1.864711 | GTGCCATTCAATGATGCATGC | 59.135 | 47.619 | 11.82 | 11.82 | 29.97 | 4.06 |
208 | 209 | 1.760029 | TGCCATTCAATGATGCATGCT | 59.240 | 42.857 | 20.33 | 4.11 | 29.97 | 3.79 |
209 | 210 | 2.959707 | TGCCATTCAATGATGCATGCTA | 59.040 | 40.909 | 20.33 | 5.73 | 29.97 | 3.49 |
210 | 211 | 3.243602 | TGCCATTCAATGATGCATGCTAC | 60.244 | 43.478 | 20.33 | 13.01 | 29.97 | 3.58 |
211 | 212 | 3.561503 | CCATTCAATGATGCATGCTACG | 58.438 | 45.455 | 20.33 | 1.63 | 29.97 | 3.51 |
212 | 213 | 2.761392 | TTCAATGATGCATGCTACGC | 57.239 | 45.000 | 20.33 | 6.01 | 0.00 | 4.42 |
213 | 214 | 1.957668 | TCAATGATGCATGCTACGCT | 58.042 | 45.000 | 20.33 | 0.00 | 0.00 | 5.07 |
214 | 215 | 1.869132 | TCAATGATGCATGCTACGCTC | 59.131 | 47.619 | 20.33 | 8.32 | 0.00 | 5.03 |
215 | 216 | 0.863799 | AATGATGCATGCTACGCTCG | 59.136 | 50.000 | 20.33 | 0.00 | 0.00 | 5.03 |
216 | 217 | 0.249615 | ATGATGCATGCTACGCTCGT | 60.250 | 50.000 | 20.33 | 6.48 | 0.00 | 4.18 |
217 | 218 | 0.460109 | TGATGCATGCTACGCTCGTT | 60.460 | 50.000 | 20.33 | 0.00 | 0.00 | 3.85 |
218 | 219 | 0.042708 | GATGCATGCTACGCTCGTTG | 60.043 | 55.000 | 20.33 | 0.00 | 0.00 | 4.10 |
219 | 220 | 1.431488 | ATGCATGCTACGCTCGTTGG | 61.431 | 55.000 | 20.33 | 0.00 | 0.00 | 3.77 |
220 | 221 | 1.809619 | GCATGCTACGCTCGTTGGA | 60.810 | 57.895 | 11.37 | 0.00 | 0.00 | 3.53 |
221 | 222 | 1.756375 | GCATGCTACGCTCGTTGGAG | 61.756 | 60.000 | 11.37 | 0.00 | 43.46 | 3.86 |
222 | 223 | 0.179137 | CATGCTACGCTCGTTGGAGA | 60.179 | 55.000 | 0.00 | 0.00 | 43.27 | 3.71 |
223 | 224 | 0.530744 | ATGCTACGCTCGTTGGAGAA | 59.469 | 50.000 | 0.00 | 0.00 | 43.27 | 2.87 |
224 | 225 | 0.315886 | TGCTACGCTCGTTGGAGAAA | 59.684 | 50.000 | 0.00 | 0.00 | 43.27 | 2.52 |
225 | 226 | 0.992802 | GCTACGCTCGTTGGAGAAAG | 59.007 | 55.000 | 0.00 | 0.00 | 43.27 | 2.62 |
226 | 227 | 1.669211 | GCTACGCTCGTTGGAGAAAGT | 60.669 | 52.381 | 0.00 | 0.00 | 43.27 | 2.66 |
227 | 228 | 2.415090 | GCTACGCTCGTTGGAGAAAGTA | 60.415 | 50.000 | 0.00 | 0.00 | 43.27 | 2.24 |
228 | 229 | 2.806608 | ACGCTCGTTGGAGAAAGTAA | 57.193 | 45.000 | 0.00 | 0.00 | 43.27 | 2.24 |
229 | 230 | 3.102052 | ACGCTCGTTGGAGAAAGTAAA | 57.898 | 42.857 | 0.00 | 0.00 | 43.27 | 2.01 |
230 | 231 | 3.460103 | ACGCTCGTTGGAGAAAGTAAAA | 58.540 | 40.909 | 0.00 | 0.00 | 43.27 | 1.52 |
231 | 232 | 4.062991 | ACGCTCGTTGGAGAAAGTAAAAT | 58.937 | 39.130 | 0.00 | 0.00 | 43.27 | 1.82 |
232 | 233 | 4.084013 | ACGCTCGTTGGAGAAAGTAAAATG | 60.084 | 41.667 | 0.00 | 0.00 | 43.27 | 2.32 |
233 | 234 | 4.159120 | GCTCGTTGGAGAAAGTAAAATGC | 58.841 | 43.478 | 0.00 | 0.00 | 43.27 | 3.56 |
234 | 235 | 4.394795 | CTCGTTGGAGAAAGTAAAATGCG | 58.605 | 43.478 | 0.00 | 0.00 | 43.27 | 4.73 |
235 | 236 | 4.059511 | TCGTTGGAGAAAGTAAAATGCGA | 58.940 | 39.130 | 0.00 | 0.00 | 0.00 | 5.10 |
236 | 237 | 4.151689 | TCGTTGGAGAAAGTAAAATGCGAG | 59.848 | 41.667 | 0.00 | 0.00 | 0.00 | 5.03 |
237 | 238 | 4.151689 | CGTTGGAGAAAGTAAAATGCGAGA | 59.848 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
238 | 239 | 5.333798 | CGTTGGAGAAAGTAAAATGCGAGAA | 60.334 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
239 | 240 | 5.862924 | TGGAGAAAGTAAAATGCGAGAAG | 57.137 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
240 | 241 | 5.305585 | TGGAGAAAGTAAAATGCGAGAAGT | 58.694 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
241 | 242 | 6.460781 | TGGAGAAAGTAAAATGCGAGAAGTA | 58.539 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
242 | 243 | 6.932400 | TGGAGAAAGTAAAATGCGAGAAGTAA | 59.068 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
243 | 244 | 7.606456 | TGGAGAAAGTAAAATGCGAGAAGTAAT | 59.394 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
244 | 245 | 8.117370 | GGAGAAAGTAAAATGCGAGAAGTAATC | 58.883 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
245 | 246 | 8.779354 | AGAAAGTAAAATGCGAGAAGTAATCT | 57.221 | 30.769 | 0.00 | 0.00 | 42.61 | 2.40 |
246 | 247 | 9.220767 | AGAAAGTAAAATGCGAGAAGTAATCTT | 57.779 | 29.630 | 0.00 | 0.00 | 38.96 | 2.40 |
247 | 248 | 9.827411 | GAAAGTAAAATGCGAGAAGTAATCTTT | 57.173 | 29.630 | 0.00 | 0.00 | 38.96 | 2.52 |
249 | 250 | 9.827411 | AAGTAAAATGCGAGAAGTAATCTTTTC | 57.173 | 29.630 | 0.00 | 0.00 | 38.96 | 2.29 |
250 | 251 | 8.451748 | AGTAAAATGCGAGAAGTAATCTTTTCC | 58.548 | 33.333 | 0.00 | 0.00 | 38.96 | 3.13 |
251 | 252 | 7.454260 | AAAATGCGAGAAGTAATCTTTTCCT | 57.546 | 32.000 | 0.00 | 0.00 | 38.96 | 3.36 |
252 | 253 | 6.428385 | AATGCGAGAAGTAATCTTTTCCTG | 57.572 | 37.500 | 0.00 | 0.00 | 38.96 | 3.86 |
253 | 254 | 5.147330 | TGCGAGAAGTAATCTTTTCCTGA | 57.853 | 39.130 | 0.00 | 0.00 | 38.96 | 3.86 |
254 | 255 | 5.547465 | TGCGAGAAGTAATCTTTTCCTGAA | 58.453 | 37.500 | 0.00 | 0.00 | 38.96 | 3.02 |
255 | 256 | 5.639506 | TGCGAGAAGTAATCTTTTCCTGAAG | 59.360 | 40.000 | 0.00 | 0.00 | 38.96 | 3.02 |
256 | 257 | 5.869888 | GCGAGAAGTAATCTTTTCCTGAAGA | 59.130 | 40.000 | 0.00 | 0.00 | 38.96 | 2.87 |
257 | 258 | 6.369065 | GCGAGAAGTAATCTTTTCCTGAAGAA | 59.631 | 38.462 | 0.00 | 0.00 | 38.96 | 2.52 |
258 | 259 | 7.095187 | GCGAGAAGTAATCTTTTCCTGAAGAAA | 60.095 | 37.037 | 0.00 | 0.00 | 42.82 | 2.52 |
259 | 260 | 8.439286 | CGAGAAGTAATCTTTTCCTGAAGAAAG | 58.561 | 37.037 | 0.00 | 0.00 | 45.11 | 2.62 |
260 | 261 | 9.495572 | GAGAAGTAATCTTTTCCTGAAGAAAGA | 57.504 | 33.333 | 1.55 | 1.55 | 45.11 | 2.52 |
261 | 262 | 9.278978 | AGAAGTAATCTTTTCCTGAAGAAAGAC | 57.721 | 33.333 | 1.11 | 0.00 | 45.11 | 3.01 |
262 | 263 | 7.659652 | AGTAATCTTTTCCTGAAGAAAGACG | 57.340 | 36.000 | 1.11 | 0.00 | 45.11 | 4.18 |
263 | 264 | 7.442656 | AGTAATCTTTTCCTGAAGAAAGACGA | 58.557 | 34.615 | 0.00 | 0.00 | 45.11 | 4.20 |
264 | 265 | 8.097662 | AGTAATCTTTTCCTGAAGAAAGACGAT | 58.902 | 33.333 | 0.00 | 0.00 | 45.11 | 3.73 |
265 | 266 | 9.367444 | GTAATCTTTTCCTGAAGAAAGACGATA | 57.633 | 33.333 | 0.00 | 0.00 | 45.11 | 2.92 |
269 | 270 | 9.751542 | TCTTTTCCTGAAGAAAGACGATATATC | 57.248 | 33.333 | 2.34 | 2.34 | 45.11 | 1.63 |
354 | 366 | 2.759973 | CTCGCAGGAGTGGCCCTA | 60.760 | 66.667 | 0.00 | 0.00 | 37.37 | 3.53 |
429 | 443 | 1.304713 | CAGCAACCTGCCCCAAGAT | 60.305 | 57.895 | 0.00 | 0.00 | 46.52 | 2.40 |
519 | 534 | 2.808543 | GGCAATTCACTCTCGTGTTTCT | 59.191 | 45.455 | 0.00 | 0.00 | 41.89 | 2.52 |
525 | 540 | 2.031944 | TCACTCTCGTGTTTCTCTGACG | 60.032 | 50.000 | 0.00 | 0.00 | 41.89 | 4.35 |
625 | 1869 | 4.007644 | TGCCTACGCAGCAGCACT | 62.008 | 61.111 | 0.82 | 0.00 | 41.12 | 4.40 |
685 | 1929 | 4.473520 | CCTGCCGGCGGAAGATGT | 62.474 | 66.667 | 35.52 | 0.00 | 26.79 | 3.06 |
686 | 1930 | 2.436646 | CTGCCGGCGGAAGATGTT | 60.437 | 61.111 | 30.67 | 0.00 | 26.79 | 2.71 |
687 | 1931 | 2.435938 | TGCCGGCGGAAGATGTTC | 60.436 | 61.111 | 33.44 | 9.82 | 0.00 | 3.18 |
754 | 1998 | 4.698625 | ACCCGGACTTCGCCTCCT | 62.699 | 66.667 | 0.73 | 0.00 | 37.59 | 3.69 |
755 | 1999 | 3.839432 | CCCGGACTTCGCCTCCTC | 61.839 | 72.222 | 0.73 | 0.00 | 37.59 | 3.71 |
756 | 2000 | 3.839432 | CCGGACTTCGCCTCCTCC | 61.839 | 72.222 | 0.00 | 0.00 | 37.59 | 4.30 |
757 | 2001 | 3.839432 | CGGACTTCGCCTCCTCCC | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
758 | 2002 | 3.839432 | GGACTTCGCCTCCTCCCG | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 5.14 |
759 | 2003 | 3.069318 | GACTTCGCCTCCTCCCGT | 61.069 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
760 | 2004 | 3.066233 | GACTTCGCCTCCTCCCGTC | 62.066 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
761 | 2005 | 3.839432 | CTTCGCCTCCTCCCGTCC | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
823 | 2083 | 0.602638 | TGCGAAGAATGAACCAGCGT | 60.603 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
875 | 2141 | 3.814842 | TCTTCGTCACATTGCATCTTGTT | 59.185 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
887 | 2160 | 8.262227 | ACATTGCATCTTGTTTATCCATTCATT | 58.738 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
987 | 7111 | 1.444553 | CAGTCGTCAGTCGGGAAGC | 60.445 | 63.158 | 0.00 | 0.00 | 40.32 | 3.86 |
1098 | 7231 | 4.047059 | GAAGACGACCGCCACCGA | 62.047 | 66.667 | 0.00 | 0.00 | 36.29 | 4.69 |
1348 | 7485 | 0.734942 | CTTGGTGGTGGCTACGTACG | 60.735 | 60.000 | 15.01 | 15.01 | 0.00 | 3.67 |
1349 | 7486 | 1.462731 | TTGGTGGTGGCTACGTACGT | 61.463 | 55.000 | 25.98 | 25.98 | 0.00 | 3.57 |
1350 | 7487 | 0.607762 | TGGTGGTGGCTACGTACGTA | 60.608 | 55.000 | 25.41 | 25.41 | 0.00 | 3.57 |
1351 | 7488 | 0.179163 | GGTGGTGGCTACGTACGTAC | 60.179 | 60.000 | 23.60 | 16.35 | 0.00 | 3.67 |
1352 | 7489 | 0.804989 | GTGGTGGCTACGTACGTACT | 59.195 | 55.000 | 23.60 | 12.43 | 0.00 | 2.73 |
1353 | 7490 | 2.006888 | GTGGTGGCTACGTACGTACTA | 58.993 | 52.381 | 23.60 | 12.17 | 0.00 | 1.82 |
1557 | 7716 | 4.694012 | GTGCATAAGATGTACGTGTAGC | 57.306 | 45.455 | 0.00 | 0.00 | 36.21 | 3.58 |
1591 | 7800 | 9.755064 | GTAACAAATTGTCACTGATGTACATAC | 57.245 | 33.333 | 8.71 | 3.48 | 0.00 | 2.39 |
1635 | 7844 | 5.437060 | ACTGTGAATACCCTATTTCGCATT | 58.563 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
1643 | 7853 | 5.262588 | ACCCTATTTCGCATTCCATTTTC | 57.737 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
1666 | 7876 | 7.722795 | TCTGTGAATCGTCATTTTCTGTTAA | 57.277 | 32.000 | 0.00 | 0.00 | 35.80 | 2.01 |
1695 | 7905 | 5.411831 | TTCATACTGTGAGATGTGAAGCT | 57.588 | 39.130 | 0.00 | 0.00 | 38.29 | 3.74 |
1772 | 7983 | 7.755373 | GGAAGTACAAAATTCCTCAAGCATAAC | 59.245 | 37.037 | 4.72 | 0.00 | 41.52 | 1.89 |
1785 | 7996 | 6.392353 | TCAAGCATAACAAAAATTGCATCG | 57.608 | 33.333 | 0.00 | 0.00 | 37.56 | 3.84 |
1791 | 8002 | 6.694411 | GCATAACAAAAATTGCATCGAGATCT | 59.306 | 34.615 | 0.00 | 0.00 | 35.22 | 2.75 |
1797 | 8008 | 8.514594 | ACAAAAATTGCATCGAGATCTTTAGAA | 58.485 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
1807 | 8018 | 4.091509 | CGAGATCTTTAGAACACCAAACGG | 59.908 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
1816 | 8027 | 1.228003 | CACCAAACGGCCACTACCA | 60.228 | 57.895 | 2.24 | 0.00 | 0.00 | 3.25 |
1817 | 8028 | 0.608035 | CACCAAACGGCCACTACCAT | 60.608 | 55.000 | 2.24 | 0.00 | 0.00 | 3.55 |
1856 | 8067 | 4.406173 | CGCCGCTGTCGTCACTCT | 62.406 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
1858 | 8069 | 2.179517 | CCGCTGTCGTCACTCTCC | 59.820 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
1859 | 8070 | 2.179517 | CGCTGTCGTCACTCTCCC | 59.820 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1914 | 8127 | 1.315257 | AATCTTCGTGCACATGCCCC | 61.315 | 55.000 | 18.64 | 0.00 | 41.18 | 5.80 |
1923 | 8137 | 1.000739 | CACATGCCCCAAGGACCAT | 59.999 | 57.895 | 0.00 | 0.00 | 33.47 | 3.55 |
1925 | 8139 | 1.307309 | CATGCCCCAAGGACCATCA | 59.693 | 57.895 | 0.00 | 0.00 | 33.47 | 3.07 |
1926 | 8140 | 1.039233 | CATGCCCCAAGGACCATCAC | 61.039 | 60.000 | 0.00 | 0.00 | 33.47 | 3.06 |
1946 | 8160 | 2.943033 | ACCATGTAGCCATAGTTTTCGC | 59.057 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
1975 | 8189 | 7.577303 | TGAACCCTTGAATAGATCTAAAGCAT | 58.423 | 34.615 | 6.52 | 0.00 | 0.00 | 3.79 |
1983 | 8197 | 9.547753 | TTGAATAGATCTAAAGCATCTAACACC | 57.452 | 33.333 | 6.52 | 0.00 | 36.62 | 4.16 |
1992 | 8206 | 4.471904 | AGCATCTAACACCAAATCTCGA | 57.528 | 40.909 | 0.00 | 0.00 | 0.00 | 4.04 |
1995 | 8209 | 4.572389 | GCATCTAACACCAAATCTCGACAT | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1999 | 8213 | 0.298707 | CACCAAATCTCGACATCGCG | 59.701 | 55.000 | 0.00 | 0.00 | 39.60 | 5.87 |
2001 | 8215 | 1.420641 | CCAAATCTCGACATCGCGCA | 61.421 | 55.000 | 8.75 | 0.00 | 39.60 | 6.09 |
2007 | 8221 | 3.852203 | CGACATCGCGCATGCACA | 61.852 | 61.111 | 19.57 | 0.00 | 42.97 | 4.57 |
2009 | 8223 | 1.864750 | GACATCGCGCATGCACAAC | 60.865 | 57.895 | 19.57 | 2.61 | 42.97 | 3.32 |
2030 | 8244 | 0.245813 | AGAAACCCTAACCTCGACGC | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2036 | 8250 | 1.294138 | CTAACCTCGACGCCCCAAA | 59.706 | 57.895 | 0.00 | 0.00 | 0.00 | 3.28 |
2050 | 8264 | 0.955919 | CCCAAAGAGACGGCAGGAAC | 60.956 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2062 | 8276 | 2.036890 | AGGAACCTACGCCGGAGT | 59.963 | 61.111 | 17.10 | 17.10 | 0.00 | 3.85 |
2120 | 8334 | 3.126000 | GGATCGAAGCTTGGAAGACAAAG | 59.874 | 47.826 | 15.48 | 0.00 | 38.91 | 2.77 |
2132 | 8346 | 5.424757 | TGGAAGACAAAGTCGAAGAAGAAA | 58.575 | 37.500 | 0.00 | 0.00 | 39.69 | 2.52 |
2133 | 8347 | 6.055588 | TGGAAGACAAAGTCGAAGAAGAAAT | 58.944 | 36.000 | 0.00 | 0.00 | 39.69 | 2.17 |
2153 | 8367 | 2.102357 | CGACATCCGTCCGAGTGG | 59.898 | 66.667 | 0.00 | 0.00 | 39.11 | 4.00 |
2161 | 8375 | 4.451150 | GTCCGAGTGGCGCATCCA | 62.451 | 66.667 | 10.83 | 0.00 | 44.18 | 3.41 |
2202 | 8416 | 2.029623 | CCTAAACTACTAGCCGGAGCA | 58.970 | 52.381 | 5.05 | 0.00 | 43.56 | 4.26 |
2207 | 8421 | 0.466555 | CTACTAGCCGGAGCAGAGGT | 60.467 | 60.000 | 5.05 | 0.00 | 43.56 | 3.85 |
2212 | 8426 | 3.062466 | CCGGAGCAGAGGTGTCGA | 61.062 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
2217 | 8431 | 1.205893 | GGAGCAGAGGTGTCGAGATTT | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2227 | 8441 | 1.001248 | TCGAGATTTCCCTCCCCGT | 59.999 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
2232 | 8446 | 2.029307 | GATTTCCCTCCCCGTCTCCG | 62.029 | 65.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2250 | 8464 | 2.978824 | GCCACCGAAGCCTGTAGA | 59.021 | 61.111 | 0.00 | 0.00 | 0.00 | 2.59 |
2256 | 8470 | 1.272536 | ACCGAAGCCTGTAGAGGAGAA | 60.273 | 52.381 | 10.79 | 0.00 | 42.93 | 2.87 |
2262 | 8476 | 1.936547 | GCCTGTAGAGGAGAATTTGCG | 59.063 | 52.381 | 10.79 | 0.00 | 42.93 | 4.85 |
2269 | 8483 | 0.253044 | AGGAGAATTTGCGCTAGCCA | 59.747 | 50.000 | 9.73 | 5.42 | 44.33 | 4.75 |
2271 | 8485 | 1.265365 | GGAGAATTTGCGCTAGCCATC | 59.735 | 52.381 | 9.73 | 3.52 | 44.33 | 3.51 |
2282 | 8496 | 2.427540 | CTAGCCATCGAGGGGAAGCG | 62.428 | 65.000 | 19.23 | 0.00 | 38.09 | 4.68 |
2286 | 8500 | 2.127869 | CATCGAGGGGAAGCGGAGA | 61.128 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
2291 | 8505 | 1.003718 | AGGGGAAGCGGAGAAAACG | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 3.60 |
2299 | 8513 | 2.162716 | CGGAGAAAACGCTTGGAGG | 58.837 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
2304 | 8518 | 3.304726 | GGAGAAAACGCTTGGAGGAAAAG | 60.305 | 47.826 | 0.00 | 0.00 | 0.00 | 2.27 |
2312 | 8526 | 5.769367 | ACGCTTGGAGGAAAAGTTAATTTC | 58.231 | 37.500 | 0.00 | 0.00 | 38.34 | 2.17 |
2313 | 8527 | 5.535030 | ACGCTTGGAGGAAAAGTTAATTTCT | 59.465 | 36.000 | 2.47 | 0.00 | 38.92 | 2.52 |
2316 | 8530 | 6.863645 | GCTTGGAGGAAAAGTTAATTTCTGAC | 59.136 | 38.462 | 2.47 | 0.00 | 38.92 | 3.51 |
2318 | 8532 | 7.510549 | TGGAGGAAAAGTTAATTTCTGACTG | 57.489 | 36.000 | 2.47 | 0.00 | 38.92 | 3.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 5.048224 | ACAACCGAGATAGAAGAAGTTTCGA | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2 | 3 | 5.162075 | ACAACCGAGATAGAAGAAGTTTCG | 58.838 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
3 | 4 | 6.157211 | TGACAACCGAGATAGAAGAAGTTTC | 58.843 | 40.000 | 0.00 | 0.00 | 0.00 | 2.78 |
4 | 5 | 6.097915 | TGACAACCGAGATAGAAGAAGTTT | 57.902 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
5 | 6 | 5.723672 | TGACAACCGAGATAGAAGAAGTT | 57.276 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
6 | 7 | 5.723672 | TTGACAACCGAGATAGAAGAAGT | 57.276 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
7 | 8 | 6.390721 | TCTTTGACAACCGAGATAGAAGAAG | 58.609 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
8 | 9 | 6.208797 | TCTCTTTGACAACCGAGATAGAAGAA | 59.791 | 38.462 | 10.74 | 0.00 | 0.00 | 2.52 |
9 | 10 | 5.710567 | TCTCTTTGACAACCGAGATAGAAGA | 59.289 | 40.000 | 10.74 | 0.00 | 0.00 | 2.87 |
10 | 11 | 5.955488 | TCTCTTTGACAACCGAGATAGAAG | 58.045 | 41.667 | 10.74 | 0.00 | 0.00 | 2.85 |
11 | 12 | 5.977489 | TCTCTTTGACAACCGAGATAGAA | 57.023 | 39.130 | 10.74 | 0.00 | 0.00 | 2.10 |
12 | 13 | 6.531503 | AATCTCTTTGACAACCGAGATAGA | 57.468 | 37.500 | 20.94 | 6.50 | 41.10 | 1.98 |
13 | 14 | 7.923344 | ACATAATCTCTTTGACAACCGAGATAG | 59.077 | 37.037 | 20.94 | 17.24 | 41.10 | 2.08 |
14 | 15 | 7.706607 | CACATAATCTCTTTGACAACCGAGATA | 59.293 | 37.037 | 20.94 | 13.63 | 41.10 | 1.98 |
15 | 16 | 6.536582 | CACATAATCTCTTTGACAACCGAGAT | 59.463 | 38.462 | 17.40 | 17.40 | 43.11 | 2.75 |
16 | 17 | 5.869344 | CACATAATCTCTTTGACAACCGAGA | 59.131 | 40.000 | 15.12 | 15.12 | 36.99 | 4.04 |
17 | 18 | 5.869344 | TCACATAATCTCTTTGACAACCGAG | 59.131 | 40.000 | 7.16 | 7.16 | 0.00 | 4.63 |
18 | 19 | 5.789521 | TCACATAATCTCTTTGACAACCGA | 58.210 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
19 | 20 | 5.446473 | GCTCACATAATCTCTTTGACAACCG | 60.446 | 44.000 | 0.00 | 0.00 | 0.00 | 4.44 |
20 | 21 | 5.446473 | CGCTCACATAATCTCTTTGACAACC | 60.446 | 44.000 | 0.00 | 0.00 | 0.00 | 3.77 |
21 | 22 | 5.554636 | CGCTCACATAATCTCTTTGACAAC | 58.445 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
22 | 23 | 4.093408 | GCGCTCACATAATCTCTTTGACAA | 59.907 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
23 | 24 | 3.618594 | GCGCTCACATAATCTCTTTGACA | 59.381 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
24 | 25 | 3.001736 | GGCGCTCACATAATCTCTTTGAC | 59.998 | 47.826 | 7.64 | 0.00 | 0.00 | 3.18 |
25 | 26 | 3.198068 | GGCGCTCACATAATCTCTTTGA | 58.802 | 45.455 | 7.64 | 0.00 | 0.00 | 2.69 |
26 | 27 | 2.289002 | GGGCGCTCACATAATCTCTTTG | 59.711 | 50.000 | 7.64 | 0.00 | 0.00 | 2.77 |
27 | 28 | 2.092968 | TGGGCGCTCACATAATCTCTTT | 60.093 | 45.455 | 5.44 | 0.00 | 0.00 | 2.52 |
28 | 29 | 1.486310 | TGGGCGCTCACATAATCTCTT | 59.514 | 47.619 | 5.44 | 0.00 | 0.00 | 2.85 |
29 | 30 | 1.069823 | CTGGGCGCTCACATAATCTCT | 59.930 | 52.381 | 5.44 | 0.00 | 0.00 | 3.10 |
30 | 31 | 1.202580 | ACTGGGCGCTCACATAATCTC | 60.203 | 52.381 | 5.44 | 0.00 | 0.00 | 2.75 |
31 | 32 | 0.833287 | ACTGGGCGCTCACATAATCT | 59.167 | 50.000 | 5.44 | 0.00 | 0.00 | 2.40 |
32 | 33 | 1.599542 | GAACTGGGCGCTCACATAATC | 59.400 | 52.381 | 5.44 | 0.00 | 0.00 | 1.75 |
33 | 34 | 1.065491 | TGAACTGGGCGCTCACATAAT | 60.065 | 47.619 | 5.44 | 0.00 | 0.00 | 1.28 |
34 | 35 | 0.323302 | TGAACTGGGCGCTCACATAA | 59.677 | 50.000 | 5.44 | 0.00 | 0.00 | 1.90 |
35 | 36 | 0.541392 | ATGAACTGGGCGCTCACATA | 59.459 | 50.000 | 5.44 | 0.00 | 0.00 | 2.29 |
36 | 37 | 0.541392 | TATGAACTGGGCGCTCACAT | 59.459 | 50.000 | 5.44 | 11.90 | 0.00 | 3.21 |
37 | 38 | 0.391130 | GTATGAACTGGGCGCTCACA | 60.391 | 55.000 | 5.44 | 2.87 | 0.00 | 3.58 |
38 | 39 | 0.391130 | TGTATGAACTGGGCGCTCAC | 60.391 | 55.000 | 5.44 | 0.00 | 0.00 | 3.51 |
39 | 40 | 0.108186 | CTGTATGAACTGGGCGCTCA | 60.108 | 55.000 | 10.90 | 10.90 | 0.00 | 4.26 |
40 | 41 | 0.175760 | TCTGTATGAACTGGGCGCTC | 59.824 | 55.000 | 7.64 | 2.47 | 0.00 | 5.03 |
41 | 42 | 0.108138 | GTCTGTATGAACTGGGCGCT | 60.108 | 55.000 | 7.64 | 0.00 | 0.00 | 5.92 |
42 | 43 | 1.090052 | GGTCTGTATGAACTGGGCGC | 61.090 | 60.000 | 0.00 | 0.00 | 0.00 | 6.53 |
43 | 44 | 0.249120 | TGGTCTGTATGAACTGGGCG | 59.751 | 55.000 | 0.00 | 0.00 | 32.49 | 6.13 |
44 | 45 | 2.092968 | TGATGGTCTGTATGAACTGGGC | 60.093 | 50.000 | 0.00 | 0.00 | 32.49 | 5.36 |
45 | 46 | 3.912496 | TGATGGTCTGTATGAACTGGG | 57.088 | 47.619 | 0.00 | 0.00 | 32.49 | 4.45 |
46 | 47 | 3.618594 | CGTTGATGGTCTGTATGAACTGG | 59.381 | 47.826 | 0.00 | 0.00 | 32.49 | 4.00 |
47 | 48 | 3.618594 | CCGTTGATGGTCTGTATGAACTG | 59.381 | 47.826 | 0.00 | 0.00 | 32.49 | 3.16 |
48 | 49 | 3.861840 | CCGTTGATGGTCTGTATGAACT | 58.138 | 45.455 | 0.00 | 0.00 | 32.49 | 3.01 |
49 | 50 | 2.351726 | GCCGTTGATGGTCTGTATGAAC | 59.648 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
50 | 51 | 2.027653 | TGCCGTTGATGGTCTGTATGAA | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
51 | 52 | 1.552792 | TGCCGTTGATGGTCTGTATGA | 59.447 | 47.619 | 0.00 | 0.00 | 0.00 | 2.15 |
52 | 53 | 1.935873 | CTGCCGTTGATGGTCTGTATG | 59.064 | 52.381 | 0.00 | 0.00 | 0.00 | 2.39 |
53 | 54 | 1.743772 | GCTGCCGTTGATGGTCTGTAT | 60.744 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
54 | 55 | 0.391130 | GCTGCCGTTGATGGTCTGTA | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
55 | 56 | 1.672356 | GCTGCCGTTGATGGTCTGT | 60.672 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
56 | 57 | 2.401766 | GGCTGCCGTTGATGGTCTG | 61.402 | 63.158 | 1.35 | 0.00 | 0.00 | 3.51 |
57 | 58 | 2.045926 | GGCTGCCGTTGATGGTCT | 60.046 | 61.111 | 1.35 | 0.00 | 0.00 | 3.85 |
58 | 59 | 1.926511 | CTTGGCTGCCGTTGATGGTC | 61.927 | 60.000 | 14.98 | 0.00 | 0.00 | 4.02 |
59 | 60 | 1.973281 | CTTGGCTGCCGTTGATGGT | 60.973 | 57.895 | 14.98 | 0.00 | 0.00 | 3.55 |
60 | 61 | 2.879907 | CTTGGCTGCCGTTGATGG | 59.120 | 61.111 | 14.98 | 0.00 | 0.00 | 3.51 |
61 | 62 | 2.180017 | GCTTGGCTGCCGTTGATG | 59.820 | 61.111 | 14.98 | 0.00 | 0.00 | 3.07 |
62 | 63 | 3.434319 | CGCTTGGCTGCCGTTGAT | 61.434 | 61.111 | 14.98 | 0.00 | 0.00 | 2.57 |
65 | 66 | 4.722700 | ATCCGCTTGGCTGCCGTT | 62.723 | 61.111 | 14.98 | 0.00 | 0.00 | 4.44 |
66 | 67 | 4.722700 | AATCCGCTTGGCTGCCGT | 62.723 | 61.111 | 14.98 | 0.00 | 0.00 | 5.68 |
67 | 68 | 4.183686 | CAATCCGCTTGGCTGCCG | 62.184 | 66.667 | 14.98 | 1.19 | 0.00 | 5.69 |
68 | 69 | 1.669999 | AATCAATCCGCTTGGCTGCC | 61.670 | 55.000 | 12.87 | 12.87 | 35.43 | 4.85 |
69 | 70 | 0.174162 | AAATCAATCCGCTTGGCTGC | 59.826 | 50.000 | 0.00 | 0.00 | 35.43 | 5.25 |
70 | 71 | 2.533266 | GAAAATCAATCCGCTTGGCTG | 58.467 | 47.619 | 0.00 | 0.00 | 35.43 | 4.85 |
71 | 72 | 1.133025 | CGAAAATCAATCCGCTTGGCT | 59.867 | 47.619 | 0.00 | 0.00 | 35.43 | 4.75 |
72 | 73 | 1.132262 | TCGAAAATCAATCCGCTTGGC | 59.868 | 47.619 | 0.00 | 0.00 | 35.43 | 4.52 |
73 | 74 | 2.161410 | TGTCGAAAATCAATCCGCTTGG | 59.839 | 45.455 | 0.00 | 0.00 | 35.43 | 3.61 |
74 | 75 | 3.125146 | TCTGTCGAAAATCAATCCGCTTG | 59.875 | 43.478 | 0.00 | 0.00 | 36.09 | 4.01 |
75 | 76 | 3.334691 | TCTGTCGAAAATCAATCCGCTT | 58.665 | 40.909 | 0.00 | 0.00 | 0.00 | 4.68 |
76 | 77 | 2.972625 | TCTGTCGAAAATCAATCCGCT | 58.027 | 42.857 | 0.00 | 0.00 | 0.00 | 5.52 |
77 | 78 | 3.557595 | AGATCTGTCGAAAATCAATCCGC | 59.442 | 43.478 | 0.00 | 0.00 | 0.00 | 5.54 |
78 | 79 | 5.725110 | AAGATCTGTCGAAAATCAATCCG | 57.275 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
79 | 80 | 7.272084 | CACAAAAGATCTGTCGAAAATCAATCC | 59.728 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
80 | 81 | 7.272084 | CCACAAAAGATCTGTCGAAAATCAATC | 59.728 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
81 | 82 | 7.086376 | CCACAAAAGATCTGTCGAAAATCAAT | 58.914 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
82 | 83 | 6.437928 | CCACAAAAGATCTGTCGAAAATCAA | 58.562 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
83 | 84 | 5.048782 | CCCACAAAAGATCTGTCGAAAATCA | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
84 | 85 | 5.181245 | TCCCACAAAAGATCTGTCGAAAATC | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
85 | 86 | 5.070001 | TCCCACAAAAGATCTGTCGAAAAT | 58.930 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
86 | 87 | 4.456535 | TCCCACAAAAGATCTGTCGAAAA | 58.543 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
87 | 88 | 4.079980 | TCCCACAAAAGATCTGTCGAAA | 57.920 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
88 | 89 | 3.762407 | TCCCACAAAAGATCTGTCGAA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 3.71 |
89 | 90 | 3.762407 | TTCCCACAAAAGATCTGTCGA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 4.20 |
90 | 91 | 4.002982 | TCATTCCCACAAAAGATCTGTCG | 58.997 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
91 | 92 | 4.397417 | CCTCATTCCCACAAAAGATCTGTC | 59.603 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
92 | 93 | 4.043310 | TCCTCATTCCCACAAAAGATCTGT | 59.957 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
93 | 94 | 4.397417 | GTCCTCATTCCCACAAAAGATCTG | 59.603 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
94 | 95 | 4.290722 | AGTCCTCATTCCCACAAAAGATCT | 59.709 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
95 | 96 | 4.593956 | AGTCCTCATTCCCACAAAAGATC | 58.406 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
96 | 97 | 4.593956 | GAGTCCTCATTCCCACAAAAGAT | 58.406 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
97 | 98 | 3.557054 | CGAGTCCTCATTCCCACAAAAGA | 60.557 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
98 | 99 | 2.744202 | CGAGTCCTCATTCCCACAAAAG | 59.256 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
99 | 100 | 2.370519 | TCGAGTCCTCATTCCCACAAAA | 59.629 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
100 | 101 | 1.974957 | TCGAGTCCTCATTCCCACAAA | 59.025 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
101 | 102 | 1.275291 | GTCGAGTCCTCATTCCCACAA | 59.725 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
102 | 103 | 0.895530 | GTCGAGTCCTCATTCCCACA | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
103 | 104 | 0.895530 | TGTCGAGTCCTCATTCCCAC | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
104 | 105 | 1.482182 | CATGTCGAGTCCTCATTCCCA | 59.518 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
105 | 106 | 1.482593 | ACATGTCGAGTCCTCATTCCC | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
106 | 107 | 2.969628 | ACATGTCGAGTCCTCATTCC | 57.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
107 | 108 | 6.561737 | TCTATACATGTCGAGTCCTCATTC | 57.438 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
108 | 109 | 6.071672 | CCATCTATACATGTCGAGTCCTCATT | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
109 | 110 | 5.417266 | CCATCTATACATGTCGAGTCCTCAT | 59.583 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
110 | 111 | 4.762251 | CCATCTATACATGTCGAGTCCTCA | 59.238 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
111 | 112 | 5.004448 | TCCATCTATACATGTCGAGTCCTC | 58.996 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
112 | 113 | 4.986783 | TCCATCTATACATGTCGAGTCCT | 58.013 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
113 | 114 | 5.416013 | TGATCCATCTATACATGTCGAGTCC | 59.584 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
114 | 115 | 6.502136 | TGATCCATCTATACATGTCGAGTC | 57.498 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
115 | 116 | 8.759481 | ATATGATCCATCTATACATGTCGAGT | 57.241 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
128 | 129 | 9.352191 | CCTTTCTTGAAGAAATATGATCCATCT | 57.648 | 33.333 | 19.49 | 0.00 | 42.66 | 2.90 |
129 | 130 | 9.347240 | TCCTTTCTTGAAGAAATATGATCCATC | 57.653 | 33.333 | 19.49 | 0.00 | 42.66 | 3.51 |
130 | 131 | 9.878737 | ATCCTTTCTTGAAGAAATATGATCCAT | 57.121 | 29.630 | 19.49 | 1.78 | 42.66 | 3.41 |
139 | 140 | 9.972106 | AGTCATCTTATCCTTTCTTGAAGAAAT | 57.028 | 29.630 | 19.49 | 8.83 | 42.66 | 2.17 |
140 | 141 | 9.442047 | GAGTCATCTTATCCTTTCTTGAAGAAA | 57.558 | 33.333 | 18.32 | 18.32 | 41.51 | 2.52 |
141 | 142 | 7.761704 | CGAGTCATCTTATCCTTTCTTGAAGAA | 59.238 | 37.037 | 3.02 | 3.02 | 37.57 | 2.52 |
142 | 143 | 7.122799 | TCGAGTCATCTTATCCTTTCTTGAAGA | 59.877 | 37.037 | 0.00 | 0.00 | 37.57 | 2.87 |
143 | 144 | 7.261325 | TCGAGTCATCTTATCCTTTCTTGAAG | 58.739 | 38.462 | 0.00 | 0.00 | 35.02 | 3.02 |
144 | 145 | 7.170393 | TCGAGTCATCTTATCCTTTCTTGAA | 57.830 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
145 | 146 | 6.775594 | TCGAGTCATCTTATCCTTTCTTGA | 57.224 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
146 | 147 | 6.813649 | TGTTCGAGTCATCTTATCCTTTCTTG | 59.186 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
147 | 148 | 6.936279 | TGTTCGAGTCATCTTATCCTTTCTT | 58.064 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
148 | 149 | 6.378564 | TCTGTTCGAGTCATCTTATCCTTTCT | 59.621 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
149 | 150 | 6.565234 | TCTGTTCGAGTCATCTTATCCTTTC | 58.435 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
150 | 151 | 6.531503 | TCTGTTCGAGTCATCTTATCCTTT | 57.468 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
151 | 152 | 6.549364 | AGATCTGTTCGAGTCATCTTATCCTT | 59.451 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
152 | 153 | 6.016360 | CAGATCTGTTCGAGTCATCTTATCCT | 60.016 | 42.308 | 14.95 | 0.00 | 0.00 | 3.24 |
153 | 154 | 6.016693 | TCAGATCTGTTCGAGTCATCTTATCC | 60.017 | 42.308 | 21.92 | 0.00 | 0.00 | 2.59 |
154 | 155 | 6.855914 | GTCAGATCTGTTCGAGTCATCTTATC | 59.144 | 42.308 | 21.92 | 0.00 | 0.00 | 1.75 |
155 | 156 | 6.319911 | TGTCAGATCTGTTCGAGTCATCTTAT | 59.680 | 38.462 | 21.92 | 0.00 | 0.00 | 1.73 |
156 | 157 | 5.648092 | TGTCAGATCTGTTCGAGTCATCTTA | 59.352 | 40.000 | 21.92 | 0.00 | 0.00 | 2.10 |
157 | 158 | 4.460731 | TGTCAGATCTGTTCGAGTCATCTT | 59.539 | 41.667 | 21.92 | 0.00 | 0.00 | 2.40 |
158 | 159 | 4.013050 | TGTCAGATCTGTTCGAGTCATCT | 58.987 | 43.478 | 21.92 | 0.00 | 0.00 | 2.90 |
159 | 160 | 4.362932 | TGTCAGATCTGTTCGAGTCATC | 57.637 | 45.455 | 21.92 | 2.99 | 0.00 | 2.92 |
160 | 161 | 4.441217 | CCATGTCAGATCTGTTCGAGTCAT | 60.441 | 45.833 | 21.92 | 12.44 | 0.00 | 3.06 |
161 | 162 | 3.119352 | CCATGTCAGATCTGTTCGAGTCA | 60.119 | 47.826 | 21.92 | 10.98 | 0.00 | 3.41 |
162 | 163 | 3.119316 | ACCATGTCAGATCTGTTCGAGTC | 60.119 | 47.826 | 21.92 | 6.38 | 0.00 | 3.36 |
163 | 164 | 2.828520 | ACCATGTCAGATCTGTTCGAGT | 59.171 | 45.455 | 21.92 | 12.47 | 0.00 | 4.18 |
164 | 165 | 3.516981 | ACCATGTCAGATCTGTTCGAG | 57.483 | 47.619 | 21.92 | 11.88 | 0.00 | 4.04 |
165 | 166 | 4.402474 | ACATACCATGTCAGATCTGTTCGA | 59.598 | 41.667 | 21.92 | 0.00 | 39.92 | 3.71 |
166 | 167 | 4.505556 | CACATACCATGTCAGATCTGTTCG | 59.494 | 45.833 | 21.92 | 9.40 | 42.70 | 3.95 |
167 | 168 | 4.272018 | GCACATACCATGTCAGATCTGTTC | 59.728 | 45.833 | 21.92 | 15.99 | 42.70 | 3.18 |
168 | 169 | 4.194640 | GCACATACCATGTCAGATCTGTT | 58.805 | 43.478 | 21.92 | 6.22 | 42.70 | 3.16 |
169 | 170 | 3.432749 | GGCACATACCATGTCAGATCTGT | 60.433 | 47.826 | 21.92 | 4.60 | 42.70 | 3.41 |
170 | 171 | 3.136763 | GGCACATACCATGTCAGATCTG | 58.863 | 50.000 | 17.07 | 17.07 | 42.70 | 2.90 |
171 | 172 | 2.773661 | TGGCACATACCATGTCAGATCT | 59.226 | 45.455 | 0.00 | 0.00 | 42.70 | 2.75 |
172 | 173 | 3.198409 | TGGCACATACCATGTCAGATC | 57.802 | 47.619 | 0.00 | 0.00 | 42.70 | 2.75 |
187 | 188 | 1.864711 | GCATGCATCATTGAATGGCAC | 59.135 | 47.619 | 14.21 | 0.00 | 39.07 | 5.01 |
188 | 189 | 1.760029 | AGCATGCATCATTGAATGGCA | 59.240 | 42.857 | 21.98 | 10.67 | 39.07 | 4.92 |
189 | 190 | 2.526304 | AGCATGCATCATTGAATGGC | 57.474 | 45.000 | 21.98 | 2.48 | 39.07 | 4.40 |
190 | 191 | 3.561503 | CGTAGCATGCATCATTGAATGG | 58.438 | 45.455 | 21.98 | 0.00 | 39.07 | 3.16 |
207 | 208 | 2.349297 | ACTTTCTCCAACGAGCGTAG | 57.651 | 50.000 | 0.00 | 0.00 | 35.94 | 3.51 |
208 | 209 | 3.921119 | TTACTTTCTCCAACGAGCGTA | 57.079 | 42.857 | 0.00 | 0.00 | 35.94 | 4.42 |
209 | 210 | 2.806608 | TTACTTTCTCCAACGAGCGT | 57.193 | 45.000 | 0.00 | 0.00 | 35.94 | 5.07 |
210 | 211 | 4.394795 | CATTTTACTTTCTCCAACGAGCG | 58.605 | 43.478 | 0.00 | 0.00 | 35.94 | 5.03 |
211 | 212 | 4.159120 | GCATTTTACTTTCTCCAACGAGC | 58.841 | 43.478 | 0.00 | 0.00 | 35.94 | 5.03 |
212 | 213 | 4.151689 | TCGCATTTTACTTTCTCCAACGAG | 59.848 | 41.667 | 0.00 | 0.00 | 37.48 | 4.18 |
213 | 214 | 4.059511 | TCGCATTTTACTTTCTCCAACGA | 58.940 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
214 | 215 | 4.151689 | TCTCGCATTTTACTTTCTCCAACG | 59.848 | 41.667 | 0.00 | 0.00 | 0.00 | 4.10 |
215 | 216 | 5.607119 | TCTCGCATTTTACTTTCTCCAAC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
216 | 217 | 5.763204 | ACTTCTCGCATTTTACTTTCTCCAA | 59.237 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
217 | 218 | 5.305585 | ACTTCTCGCATTTTACTTTCTCCA | 58.694 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
218 | 219 | 5.864628 | ACTTCTCGCATTTTACTTTCTCC | 57.135 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
219 | 220 | 8.874816 | AGATTACTTCTCGCATTTTACTTTCTC | 58.125 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
220 | 221 | 8.779354 | AGATTACTTCTCGCATTTTACTTTCT | 57.221 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
221 | 222 | 9.827411 | AAAGATTACTTCTCGCATTTTACTTTC | 57.173 | 29.630 | 0.00 | 0.00 | 35.05 | 2.62 |
223 | 224 | 9.827411 | GAAAAGATTACTTCTCGCATTTTACTT | 57.173 | 29.630 | 0.00 | 0.00 | 35.05 | 2.24 |
224 | 225 | 8.451748 | GGAAAAGATTACTTCTCGCATTTTACT | 58.548 | 33.333 | 0.00 | 0.00 | 35.05 | 2.24 |
225 | 226 | 8.451748 | AGGAAAAGATTACTTCTCGCATTTTAC | 58.548 | 33.333 | 0.00 | 0.00 | 35.05 | 2.01 |
226 | 227 | 8.450964 | CAGGAAAAGATTACTTCTCGCATTTTA | 58.549 | 33.333 | 0.00 | 0.00 | 35.05 | 1.52 |
227 | 228 | 7.174946 | TCAGGAAAAGATTACTTCTCGCATTTT | 59.825 | 33.333 | 0.00 | 0.00 | 35.05 | 1.82 |
228 | 229 | 6.655003 | TCAGGAAAAGATTACTTCTCGCATTT | 59.345 | 34.615 | 0.00 | 0.00 | 35.05 | 2.32 |
229 | 230 | 6.173339 | TCAGGAAAAGATTACTTCTCGCATT | 58.827 | 36.000 | 0.00 | 0.00 | 35.05 | 3.56 |
230 | 231 | 5.734720 | TCAGGAAAAGATTACTTCTCGCAT | 58.265 | 37.500 | 0.00 | 0.00 | 35.05 | 4.73 |
231 | 232 | 5.147330 | TCAGGAAAAGATTACTTCTCGCA | 57.853 | 39.130 | 0.00 | 0.00 | 35.05 | 5.10 |
232 | 233 | 5.869888 | TCTTCAGGAAAAGATTACTTCTCGC | 59.130 | 40.000 | 0.00 | 0.00 | 35.05 | 5.03 |
233 | 234 | 7.891183 | TTCTTCAGGAAAAGATTACTTCTCG | 57.109 | 36.000 | 0.00 | 0.00 | 35.30 | 4.04 |
234 | 235 | 9.495572 | TCTTTCTTCAGGAAAAGATTACTTCTC | 57.504 | 33.333 | 0.00 | 0.00 | 42.52 | 2.87 |
235 | 236 | 9.278978 | GTCTTTCTTCAGGAAAAGATTACTTCT | 57.721 | 33.333 | 1.36 | 0.00 | 42.52 | 2.85 |
236 | 237 | 8.224437 | CGTCTTTCTTCAGGAAAAGATTACTTC | 58.776 | 37.037 | 1.36 | 0.00 | 42.52 | 3.01 |
237 | 238 | 7.931948 | TCGTCTTTCTTCAGGAAAAGATTACTT | 59.068 | 33.333 | 1.36 | 0.00 | 42.52 | 2.24 |
238 | 239 | 7.442656 | TCGTCTTTCTTCAGGAAAAGATTACT | 58.557 | 34.615 | 1.36 | 0.00 | 42.52 | 2.24 |
239 | 240 | 7.653767 | TCGTCTTTCTTCAGGAAAAGATTAC | 57.346 | 36.000 | 1.36 | 0.00 | 42.52 | 1.89 |
243 | 244 | 9.751542 | GATATATCGTCTTTCTTCAGGAAAAGA | 57.248 | 33.333 | 0.00 | 0.00 | 42.52 | 2.52 |
244 | 245 | 8.695284 | CGATATATCGTCTTTCTTCAGGAAAAG | 58.305 | 37.037 | 23.97 | 0.00 | 44.74 | 2.27 |
245 | 246 | 8.575565 | CGATATATCGTCTTTCTTCAGGAAAA | 57.424 | 34.615 | 23.97 | 0.00 | 44.74 | 2.29 |
265 | 266 | 9.613957 | CGAGTCAGTGAAATTCTAATACGATAT | 57.386 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
266 | 267 | 8.074370 | CCGAGTCAGTGAAATTCTAATACGATA | 58.926 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
267 | 268 | 6.918569 | CCGAGTCAGTGAAATTCTAATACGAT | 59.081 | 38.462 | 0.00 | 0.00 | 0.00 | 3.73 |
268 | 269 | 6.263344 | CCGAGTCAGTGAAATTCTAATACGA | 58.737 | 40.000 | 0.00 | 0.00 | 0.00 | 3.43 |
269 | 270 | 5.051641 | GCCGAGTCAGTGAAATTCTAATACG | 60.052 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
270 | 271 | 5.810587 | TGCCGAGTCAGTGAAATTCTAATAC | 59.189 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
271 | 272 | 5.810587 | GTGCCGAGTCAGTGAAATTCTAATA | 59.189 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
272 | 273 | 4.631813 | GTGCCGAGTCAGTGAAATTCTAAT | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
273 | 274 | 3.994392 | GTGCCGAGTCAGTGAAATTCTAA | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
429 | 443 | 2.775032 | GAAACACGCGGCTGGGTAGA | 62.775 | 60.000 | 15.72 | 0.00 | 39.58 | 2.59 |
458 | 472 | 3.441246 | CGAGGCGCGTTTTTGTTTA | 57.559 | 47.368 | 8.43 | 0.00 | 34.64 | 2.01 |
487 | 501 | 0.401356 | TGAATTGCCTGGTCTGCTCA | 59.599 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
519 | 534 | 2.699954 | GAGCAAATTTCCTCCGTCAGA | 58.300 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
525 | 540 | 1.135286 | CAAGGCGAGCAAATTTCCTCC | 60.135 | 52.381 | 3.50 | 0.00 | 0.00 | 4.30 |
625 | 1869 | 1.870055 | GAAGGTGTCGTACGCTCCCA | 61.870 | 60.000 | 11.24 | 1.47 | 0.00 | 4.37 |
680 | 1924 | 3.320541 | GGATCTCATCCTGACGAACATCT | 59.679 | 47.826 | 0.00 | 0.00 | 46.19 | 2.90 |
758 | 2002 | 1.517832 | CCCGTGATGTCAGAGGGAC | 59.482 | 63.158 | 14.89 | 0.00 | 43.64 | 4.46 |
759 | 2003 | 2.359169 | GCCCGTGATGTCAGAGGGA | 61.359 | 63.158 | 21.12 | 0.00 | 43.64 | 4.20 |
760 | 2004 | 1.043116 | TAGCCCGTGATGTCAGAGGG | 61.043 | 60.000 | 15.43 | 15.43 | 43.72 | 4.30 |
761 | 2005 | 0.387202 | CTAGCCCGTGATGTCAGAGG | 59.613 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
762 | 2006 | 1.066303 | GTCTAGCCCGTGATGTCAGAG | 59.934 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
763 | 2007 | 1.103803 | GTCTAGCCCGTGATGTCAGA | 58.896 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
823 | 2083 | 6.941857 | TGCTGTGTGTATTTATAGTTGGAGA | 58.058 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
875 | 2141 | 7.068593 | AGGCAAGAAATCGAAATGAATGGATAA | 59.931 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
887 | 2160 | 1.078709 | CTCGCAGGCAAGAAATCGAA | 58.921 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
987 | 7111 | 5.549347 | CAGTTCCCCATCAGATCAGATAAG | 58.451 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
1056 | 7180 | 3.827898 | GACGACGCCTCCTCCCAG | 61.828 | 72.222 | 0.00 | 0.00 | 0.00 | 4.45 |
1538 | 7697 | 3.624900 | TCGCTACACGTACATCTTATGC | 58.375 | 45.455 | 0.00 | 0.00 | 44.19 | 3.14 |
1553 | 7712 | 7.213151 | GTGACAATTTGTTACGTATTTCGCTAC | 59.787 | 37.037 | 8.47 | 0.00 | 44.19 | 3.58 |
1557 | 7716 | 7.285069 | TCAGTGACAATTTGTTACGTATTTCG | 58.715 | 34.615 | 16.05 | 3.99 | 41.14 | 3.46 |
1591 | 7800 | 5.983720 | CAGTTATTTCCCTACACCTACATCG | 59.016 | 44.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1635 | 7844 | 6.573664 | AAATGACGATTCACAGAAAATGGA | 57.426 | 33.333 | 0.00 | 0.00 | 33.38 | 3.41 |
1643 | 7853 | 8.955061 | AATTAACAGAAAATGACGATTCACAG | 57.045 | 30.769 | 0.00 | 0.00 | 33.38 | 3.66 |
1666 | 7876 | 8.394971 | TCACATCTCACAGTATGAAACAAAAT | 57.605 | 30.769 | 0.00 | 0.00 | 39.69 | 1.82 |
1683 | 7893 | 3.601443 | ACACCACTAGCTTCACATCTC | 57.399 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
1759 | 7970 | 5.851720 | TGCAATTTTTGTTATGCTTGAGGA | 58.148 | 33.333 | 0.00 | 0.00 | 39.49 | 3.71 |
1772 | 7983 | 8.792538 | GTTCTAAAGATCTCGATGCAATTTTTG | 58.207 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
1780 | 7991 | 4.433615 | TGGTGTTCTAAAGATCTCGATGC | 58.566 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
1785 | 7996 | 4.142881 | GCCGTTTGGTGTTCTAAAGATCTC | 60.143 | 45.833 | 0.00 | 0.00 | 37.67 | 2.75 |
1791 | 8002 | 1.677052 | GTGGCCGTTTGGTGTTCTAAA | 59.323 | 47.619 | 0.00 | 0.00 | 37.67 | 1.85 |
1797 | 8008 | 1.228033 | GGTAGTGGCCGTTTGGTGT | 60.228 | 57.895 | 0.00 | 0.00 | 37.67 | 4.16 |
1807 | 8018 | 1.090052 | GTTCTGGCGATGGTAGTGGC | 61.090 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1890 | 8101 | 2.079158 | CATGTGCACGAAGATTCCAGT | 58.921 | 47.619 | 13.13 | 0.00 | 0.00 | 4.00 |
1914 | 8127 | 2.292267 | GCTACATGGTGATGGTCCTTG | 58.708 | 52.381 | 0.00 | 0.00 | 36.56 | 3.61 |
1923 | 8137 | 4.188462 | CGAAAACTATGGCTACATGGTGA | 58.812 | 43.478 | 0.00 | 0.00 | 46.53 | 4.02 |
1926 | 8140 | 2.290641 | GGCGAAAACTATGGCTACATGG | 59.709 | 50.000 | 0.00 | 0.00 | 40.98 | 3.66 |
1946 | 8160 | 4.770795 | AGATCTATTCAAGGGTTCAACGG | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
1975 | 8189 | 4.421058 | CGATGTCGAGATTTGGTGTTAGA | 58.579 | 43.478 | 0.00 | 0.00 | 43.02 | 2.10 |
1983 | 8197 | 0.578683 | ATGCGCGATGTCGAGATTTG | 59.421 | 50.000 | 12.10 | 0.00 | 41.67 | 2.32 |
1992 | 8206 | 2.176546 | GTTGTGCATGCGCGATGT | 59.823 | 55.556 | 23.50 | 0.00 | 42.97 | 3.06 |
1995 | 8209 | 3.776849 | CTCGTTGTGCATGCGCGA | 61.777 | 61.111 | 25.08 | 21.42 | 42.97 | 5.87 |
1999 | 8213 | 0.387239 | GGGTTTCTCGTTGTGCATGC | 60.387 | 55.000 | 11.82 | 11.82 | 0.00 | 4.06 |
2001 | 8215 | 2.812011 | GTTAGGGTTTCTCGTTGTGCAT | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
2007 | 8221 | 2.029560 | GTCGAGGTTAGGGTTTCTCGTT | 60.030 | 50.000 | 10.63 | 0.00 | 46.17 | 3.85 |
2027 | 8241 | 4.699522 | GCCGTCTCTTTGGGGCGT | 62.700 | 66.667 | 0.00 | 0.00 | 35.59 | 5.68 |
2030 | 8244 | 2.045926 | CCTGCCGTCTCTTTGGGG | 60.046 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
2036 | 8250 | 1.313812 | CGTAGGTTCCTGCCGTCTCT | 61.314 | 60.000 | 1.12 | 0.00 | 0.00 | 3.10 |
2062 | 8276 | 2.894765 | TGTCTGGACATAGTTGACGGAA | 59.105 | 45.455 | 0.00 | 0.00 | 36.21 | 4.30 |
2109 | 8323 | 4.665833 | TCTTCTTCGACTTTGTCTTCCA | 57.334 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
2120 | 8334 | 2.066262 | TGTCGGCATTTCTTCTTCGAC | 58.934 | 47.619 | 0.00 | 0.00 | 44.63 | 4.20 |
2153 | 8367 | 0.459585 | TTTAGTCCTCGTGGATGCGC | 60.460 | 55.000 | 9.83 | 0.00 | 45.29 | 6.09 |
2202 | 8416 | 2.104170 | GAGGGAAATCTCGACACCTCT | 58.896 | 52.381 | 0.00 | 0.00 | 40.93 | 3.69 |
2207 | 8421 | 1.327690 | CGGGGAGGGAAATCTCGACA | 61.328 | 60.000 | 0.00 | 0.00 | 34.74 | 4.35 |
2212 | 8426 | 0.691413 | GGAGACGGGGAGGGAAATCT | 60.691 | 60.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2250 | 8464 | 0.253044 | TGGCTAGCGCAAATTCTCCT | 59.747 | 50.000 | 11.47 | 0.00 | 38.10 | 3.69 |
2256 | 8470 | 0.882042 | CCTCGATGGCTAGCGCAAAT | 60.882 | 55.000 | 11.47 | 0.00 | 38.10 | 2.32 |
2262 | 8476 | 1.369321 | CTTCCCCTCGATGGCTAGC | 59.631 | 63.158 | 6.04 | 6.04 | 0.00 | 3.42 |
2269 | 8483 | 0.976073 | TTTCTCCGCTTCCCCTCGAT | 60.976 | 55.000 | 0.00 | 0.00 | 0.00 | 3.59 |
2271 | 8485 | 1.019805 | GTTTTCTCCGCTTCCCCTCG | 61.020 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2282 | 8496 | 1.892209 | TTCCTCCAAGCGTTTTCTCC | 58.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2286 | 8500 | 5.585820 | TTAACTTTTCCTCCAAGCGTTTT | 57.414 | 34.783 | 0.00 | 0.00 | 0.00 | 2.43 |
2291 | 8505 | 6.863645 | GTCAGAAATTAACTTTTCCTCCAAGC | 59.136 | 38.462 | 0.00 | 0.00 | 36.47 | 4.01 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.