Multiple sequence alignment - TraesCS3B01G355400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G355400 chr3B 100.000 5762 0 0 1 5762 565566053 565560292 0.000000e+00 10641.0
1 TraesCS3B01G355400 chr3B 95.470 2053 49 21 1467 3488 565434928 565432889 0.000000e+00 3236.0
2 TraesCS3B01G355400 chr3B 97.197 1106 29 2 4119 5222 565429372 565428267 0.000000e+00 1869.0
3 TraesCS3B01G355400 chr3B 90.190 1264 30 19 121 1340 565436136 565434923 0.000000e+00 1561.0
4 TraesCS3B01G355400 chr3B 98.392 622 9 1 3483 4103 565430346 565429725 0.000000e+00 1092.0
5 TraesCS3B01G355400 chr3B 95.238 42 2 0 5177 5218 22055931 22055890 3.730000e-07 67.6
6 TraesCS3B01G355400 chr3B 97.222 36 1 0 1052 1087 565564975 565564940 1.730000e-05 62.1
7 TraesCS3B01G355400 chr3B 97.222 36 1 0 1079 1114 565565002 565564967 1.730000e-05 62.1
8 TraesCS3B01G355400 chr3A 93.415 2627 89 22 259 2848 571400254 571397675 0.000000e+00 3816.0
9 TraesCS3B01G355400 chr3A 94.502 1055 40 7 4119 5161 571396076 571395028 0.000000e+00 1611.0
10 TraesCS3B01G355400 chr3A 93.559 885 43 6 3184 4063 571397615 571396740 0.000000e+00 1306.0
11 TraesCS3B01G355400 chr3A 89.610 1001 26 18 146 1087 571400398 571399417 0.000000e+00 1201.0
12 TraesCS3B01G355400 chr3A 99.077 542 4 1 5221 5762 610386285 610385745 0.000000e+00 972.0
13 TraesCS3B01G355400 chr3A 80.952 210 33 5 665 868 671024118 671023910 5.980000e-35 159.0
14 TraesCS3B01G355400 chr3A 94.667 75 3 1 1 75 100409380 100409307 1.310000e-21 115.0
15 TraesCS3B01G355400 chr3A 100.000 28 0 0 3169 3196 571397654 571397627 1.000000e-02 52.8
16 TraesCS3B01G355400 chr3D 97.169 1095 27 4 1079 2171 433193431 433192339 0.000000e+00 1847.0
17 TraesCS3B01G355400 chr3D 94.907 1080 46 4 4119 5190 433190062 433188984 0.000000e+00 1681.0
18 TraesCS3B01G355400 chr3D 93.632 848 40 6 3278 4120 433191586 433190748 0.000000e+00 1254.0
19 TraesCS3B01G355400 chr3D 93.584 639 32 7 2210 2840 433192339 433191702 0.000000e+00 944.0
20 TraesCS3B01G355400 chr3D 96.190 525 8 4 575 1087 433193919 433193395 0.000000e+00 848.0
21 TraesCS3B01G355400 chr3D 92.241 464 8 6 121 578 433194521 433194080 2.930000e-177 632.0
22 TraesCS3B01G355400 chr3D 87.879 66 3 4 5177 5237 384726656 384726591 8.010000e-09 73.1
23 TraesCS3B01G355400 chr3D 97.297 37 0 1 623 658 429097505 429097541 1.730000e-05 62.1
24 TraesCS3B01G355400 chr3D 100.000 31 0 0 3169 3199 433191693 433191663 2.240000e-04 58.4
25 TraesCS3B01G355400 chr7B 96.863 542 9 4 5221 5762 115760140 115759607 0.000000e+00 900.0
26 TraesCS3B01G355400 chr7B 88.462 52 5 1 5177 5227 324391551 324391500 1.730000e-05 62.1
27 TraesCS3B01G355400 chr7B 100.000 33 0 0 626 658 635101256 635101288 1.730000e-05 62.1
28 TraesCS3B01G355400 chr2A 96.310 542 15 3 5221 5762 143527561 143528097 0.000000e+00 885.0
29 TraesCS3B01G355400 chr2A 80.476 210 34 5 665 868 719359137 719359345 2.780000e-33 154.0
30 TraesCS3B01G355400 chr2A 91.489 47 2 1 5164 5210 236838351 236838395 4.820000e-06 63.9
31 TraesCS3B01G355400 chr1B 95.788 546 14 3 5218 5762 384519315 384519852 0.000000e+00 872.0
32 TraesCS3B01G355400 chr1B 87.387 666 60 10 1915 2565 591230394 591231050 0.000000e+00 743.0
33 TraesCS3B01G355400 chr1B 86.731 520 43 17 4322 4827 591232880 591233387 6.520000e-154 555.0
34 TraesCS3B01G355400 chr1B 81.993 572 74 13 1253 1801 591229616 591230181 5.260000e-125 459.0
35 TraesCS3B01G355400 chr1B 82.881 479 55 11 3401 3878 591231439 591231891 6.950000e-109 405.0
36 TraesCS3B01G355400 chr1B 78.270 497 55 26 156 626 591228646 591229115 2.650000e-68 270.0
37 TraesCS3B01G355400 chr1B 92.105 152 12 0 1079 1230 591229475 591229626 1.260000e-51 215.0
38 TraesCS3B01G355400 chr1B 87.166 187 13 4 901 1083 591229327 591229506 9.790000e-48 202.0
39 TraesCS3B01G355400 chr1A 88.450 658 67 6 1916 2565 533463990 533464646 0.000000e+00 785.0
40 TraesCS3B01G355400 chr1A 78.646 960 118 56 156 1081 533462399 533463305 1.810000e-154 556.0
41 TraesCS3B01G355400 chr1A 85.294 544 59 13 4321 4857 533466754 533467283 5.080000e-150 542.0
42 TraesCS3B01G355400 chr1A 81.788 593 65 24 1253 1821 533463417 533463990 1.890000e-124 457.0
43 TraesCS3B01G355400 chr1A 81.420 479 64 15 3401 3878 533465306 533465760 9.120000e-98 368.0
44 TraesCS3B01G355400 chr1A 83.667 300 35 9 2713 3003 533465023 533465317 2.650000e-68 270.0
45 TraesCS3B01G355400 chr1A 92.667 150 11 0 1079 1228 533463276 533463425 3.500000e-52 217.0
46 TraesCS3B01G355400 chr1A 94.872 78 3 1 1 78 85043332 85043256 2.820000e-23 121.0
47 TraesCS3B01G355400 chr1A 94.595 74 2 1 1 72 85045401 85045328 4.720000e-21 113.0
48 TraesCS3B01G355400 chr1D 88.298 658 67 6 1916 2565 436212419 436213074 0.000000e+00 780.0
49 TraesCS3B01G355400 chr1D 85.424 542 46 21 4322 4857 436214889 436215403 3.060000e-147 532.0
50 TraesCS3B01G355400 chr1D 83.051 590 67 16 1253 1821 436211842 436212419 6.660000e-139 505.0
51 TraesCS3B01G355400 chr1D 84.054 370 39 15 732 1083 436211365 436211732 7.150000e-89 339.0
52 TraesCS3B01G355400 chr1D 95.333 150 7 0 1079 1228 436211701 436211850 7.460000e-59 239.0
53 TraesCS3B01G355400 chr1D 84.659 176 12 7 3946 4117 436213823 436213987 1.660000e-35 161.0
54 TraesCS3B01G355400 chr5D 88.955 335 33 3 3022 3352 72370670 72370336 1.490000e-110 411.0
55 TraesCS3B01G355400 chr5D 92.000 50 1 3 5177 5225 114214614 114214661 3.730000e-07 67.6
56 TraesCS3B01G355400 chr5D 100.000 33 0 0 626 658 439643713 439643681 1.730000e-05 62.1
57 TraesCS3B01G355400 chr4A 88.427 337 34 4 3022 3354 707826913 707826578 8.990000e-108 401.0
58 TraesCS3B01G355400 chr4A 96.429 224 5 1 5477 5700 669666852 669666632 3.280000e-97 366.0
59 TraesCS3B01G355400 chr4A 94.783 230 11 1 5221 5450 669667251 669667023 1.970000e-94 357.0
60 TraesCS3B01G355400 chr4A 100.000 72 0 0 5691 5762 669666464 669666393 3.620000e-27 134.0
61 TraesCS3B01G355400 chr4A 94.667 75 2 1 1 73 466929732 466929658 1.310000e-21 115.0
62 TraesCS3B01G355400 chr4A 94.595 74 2 1 1 72 466934256 466934183 4.720000e-21 113.0
63 TraesCS3B01G355400 chr2B 96.410 195 4 1 5506 5700 29224180 29224371 9.320000e-83 318.0
64 TraesCS3B01G355400 chr2B 98.667 75 1 0 5688 5762 29224540 29224614 3.620000e-27 134.0
65 TraesCS3B01G355400 chr2B 95.833 72 3 0 1 72 793405436 793405507 3.650000e-22 117.0
66 TraesCS3B01G355400 chr4B 80.952 210 33 5 665 868 534718854 534719062 5.980000e-35 159.0
67 TraesCS3B01G355400 chr4B 79.717 212 34 6 663 868 411178075 411177867 1.670000e-30 145.0
68 TraesCS3B01G355400 chr6B 79.245 212 35 6 663 868 127847364 127847156 7.790000e-29 139.0
69 TraesCS3B01G355400 chr6B 95.349 43 1 1 5172 5213 708101415 708101457 3.730000e-07 67.6
70 TraesCS3B01G355400 chr5B 96.000 75 2 1 1 75 336406999 336407072 2.820000e-23 121.0
71 TraesCS3B01G355400 chr7A 95.890 73 3 0 1 73 106429470 106429398 1.010000e-22 119.0
72 TraesCS3B01G355400 chr7A 81.690 71 8 4 5221 5287 704485767 704485698 3.000000e-03 54.7
73 TraesCS3B01G355400 chr7A 100.000 28 0 0 5222 5249 433620289 433620316 1.000000e-02 52.8
74 TraesCS3B01G355400 chr6A 94.595 74 2 1 1 72 176002727 176002800 4.720000e-21 113.0
75 TraesCS3B01G355400 chr6A 94.286 35 2 0 5222 5256 216570611 216570645 3.000000e-03 54.7
76 TraesCS3B01G355400 chr4D 100.000 35 0 0 624 658 303079344 303079310 1.340000e-06 65.8
77 TraesCS3B01G355400 chr6D 94.872 39 2 0 620 658 52814549 52814587 1.730000e-05 62.1
78 TraesCS3B01G355400 chr5A 100.000 33 0 0 626 658 493020909 493020877 1.730000e-05 62.1
79 TraesCS3B01G355400 chr2D 85.965 57 5 3 5177 5233 341665891 341665838 2.240000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G355400 chr3B 565560292 565566053 5761 True 3588.400000 10641 98.148000 1 5762 3 chr3B.!!$R3 5761
1 TraesCS3B01G355400 chr3B 565428267 565436136 7869 True 1939.500000 3236 95.312250 121 5222 4 chr3B.!!$R2 5101
2 TraesCS3B01G355400 chr3A 571395028 571400398 5370 True 1597.360000 3816 94.217200 146 5161 5 chr3A.!!$R4 5015
3 TraesCS3B01G355400 chr3A 610385745 610386285 540 True 972.000000 972 99.077000 5221 5762 1 chr3A.!!$R2 541
4 TraesCS3B01G355400 chr3D 433188984 433194521 5537 True 1037.771429 1847 95.389000 121 5190 7 chr3D.!!$R2 5069
5 TraesCS3B01G355400 chr7B 115759607 115760140 533 True 900.000000 900 96.863000 5221 5762 1 chr7B.!!$R1 541
6 TraesCS3B01G355400 chr2A 143527561 143528097 536 False 885.000000 885 96.310000 5221 5762 1 chr2A.!!$F1 541
7 TraesCS3B01G355400 chr1B 384519315 384519852 537 False 872.000000 872 95.788000 5218 5762 1 chr1B.!!$F1 544
8 TraesCS3B01G355400 chr1B 591228646 591233387 4741 False 407.000000 743 85.219000 156 4827 7 chr1B.!!$F2 4671
9 TraesCS3B01G355400 chr1A 533462399 533467283 4884 False 456.428571 785 84.561714 156 4857 7 chr1A.!!$F1 4701
10 TraesCS3B01G355400 chr1D 436211365 436215403 4038 False 426.000000 780 86.803167 732 4857 6 chr1D.!!$F1 4125
11 TraesCS3B01G355400 chr4A 669666393 669667251 858 True 285.666667 366 97.070667 5221 5762 3 chr4A.!!$R4 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.179081 GTGGGAAGATCACCGGTAGC 60.179 60.000 6.87 0.00 0.00 3.58 F
93 94 0.325296 TGGGAAGATCACCGGTAGCT 60.325 55.000 6.87 1.22 0.00 3.32 F
94 95 0.389757 GGGAAGATCACCGGTAGCTC 59.610 60.000 6.87 4.24 0.00 4.09 F
95 96 0.389757 GGAAGATCACCGGTAGCTCC 59.610 60.000 6.87 5.66 0.00 4.70 F
98 99 0.757188 AGATCACCGGTAGCTCCTGG 60.757 60.000 6.87 1.88 36.47 4.45 F
1098 1407 1.557099 TGCTCGTGTTATCCTCTGGT 58.443 50.000 0.00 0.00 0.00 4.00 F
2454 3024 2.564771 TGACTGCCTGTGAACAGAAAG 58.435 47.619 12.05 10.53 46.59 2.62 F
3330 4238 1.269703 ACGTAGGACCATTGGACCCC 61.270 60.000 18.89 11.79 38.25 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1988 0.468226 ACCGCTTGTTCCAGAGACAA 59.532 50.000 0.00 0.0 35.81 3.18 R
1737 2097 8.917655 GTGTCTCTCTCAAGAATTACTACAAAC 58.082 37.037 0.00 0.0 0.00 2.93 R
2410 2979 7.826744 TCAACTTACCTATGCACAATTCACATA 59.173 33.333 0.00 0.0 0.00 2.29 R
2454 3024 7.771183 TCAGTAAAGAAAACCATATGATTGCC 58.229 34.615 3.65 0.0 0.00 4.52 R
2680 3258 1.067354 GCAAAAAGGCATGTCTCCCTG 60.067 52.381 0.00 0.0 0.00 4.45 R
3330 4238 0.034767 TTTCAGCTGAGGCAGGGATG 60.035 55.000 17.43 0.0 41.70 3.51 R
3332 4240 0.478072 TTTTTCAGCTGAGGCAGGGA 59.522 50.000 17.43 0.0 41.70 4.20 R
5084 9983 0.107654 GGAACGGGTCTCCTTCATGG 60.108 60.000 0.00 0.0 37.10 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.506328 ACAACCTGAACTATACAAGGAAAAC 57.494 36.000 0.00 0.00 0.00 2.43
25 26 7.057894 ACAACCTGAACTATACAAGGAAAACA 58.942 34.615 0.00 0.00 0.00 2.83
26 27 7.228706 ACAACCTGAACTATACAAGGAAAACAG 59.771 37.037 0.00 0.00 0.00 3.16
27 28 6.238648 ACCTGAACTATACAAGGAAAACAGG 58.761 40.000 0.00 0.00 44.25 4.00
28 29 6.043938 ACCTGAACTATACAAGGAAAACAGGA 59.956 38.462 0.50 0.00 42.22 3.86
29 30 6.595716 CCTGAACTATACAAGGAAAACAGGAG 59.404 42.308 0.00 0.00 42.22 3.69
30 31 7.311092 TGAACTATACAAGGAAAACAGGAGA 57.689 36.000 0.00 0.00 0.00 3.71
31 32 7.918076 TGAACTATACAAGGAAAACAGGAGAT 58.082 34.615 0.00 0.00 0.00 2.75
32 33 7.824289 TGAACTATACAAGGAAAACAGGAGATG 59.176 37.037 0.00 0.00 0.00 2.90
33 34 6.653989 ACTATACAAGGAAAACAGGAGATGG 58.346 40.000 0.00 0.00 0.00 3.51
34 35 3.160679 ACAAGGAAAACAGGAGATGGG 57.839 47.619 0.00 0.00 0.00 4.00
35 36 1.821136 CAAGGAAAACAGGAGATGGGC 59.179 52.381 0.00 0.00 0.00 5.36
36 37 0.332972 AGGAAAACAGGAGATGGGCC 59.667 55.000 0.00 0.00 0.00 5.80
37 38 0.684479 GGAAAACAGGAGATGGGCCC 60.684 60.000 17.59 17.59 0.00 5.80
38 39 0.332972 GAAAACAGGAGATGGGCCCT 59.667 55.000 25.70 8.64 0.00 5.19
39 40 1.564348 GAAAACAGGAGATGGGCCCTA 59.436 52.381 25.70 10.18 0.00 3.53
40 41 0.919710 AAACAGGAGATGGGCCCTAC 59.080 55.000 25.70 16.85 0.00 3.18
41 42 0.253160 AACAGGAGATGGGCCCTACA 60.253 55.000 25.70 2.00 0.00 2.74
42 43 0.983378 ACAGGAGATGGGCCCTACAC 60.983 60.000 25.70 14.83 0.00 2.90
43 44 0.982852 CAGGAGATGGGCCCTACACA 60.983 60.000 25.70 1.02 0.00 3.72
44 45 0.983378 AGGAGATGGGCCCTACACAC 60.983 60.000 25.70 9.11 0.00 3.82
45 46 1.271840 GGAGATGGGCCCTACACACA 61.272 60.000 25.70 0.00 0.00 3.72
46 47 0.839946 GAGATGGGCCCTACACACAT 59.160 55.000 25.70 5.63 0.00 3.21
47 48 2.047061 GAGATGGGCCCTACACACATA 58.953 52.381 25.70 0.00 0.00 2.29
48 49 2.639839 GAGATGGGCCCTACACACATAT 59.360 50.000 25.70 3.84 0.00 1.78
49 50 3.838317 GAGATGGGCCCTACACACATATA 59.162 47.826 25.70 0.00 0.00 0.86
50 51 3.583086 AGATGGGCCCTACACACATATAC 59.417 47.826 25.70 0.00 0.00 1.47
51 52 2.765502 TGGGCCCTACACACATATACA 58.234 47.619 25.70 0.00 0.00 2.29
52 53 2.436542 TGGGCCCTACACACATATACAC 59.563 50.000 25.70 0.00 0.00 2.90
53 54 2.547218 GGGCCCTACACACATATACACG 60.547 54.545 17.04 0.00 0.00 4.49
54 55 2.101917 GGCCCTACACACATATACACGT 59.898 50.000 0.00 0.00 0.00 4.49
55 56 3.318839 GGCCCTACACACATATACACGTA 59.681 47.826 0.00 0.00 0.00 3.57
56 57 4.293415 GCCCTACACACATATACACGTAC 58.707 47.826 0.00 0.00 0.00 3.67
57 58 4.202040 GCCCTACACACATATACACGTACA 60.202 45.833 0.00 0.00 0.00 2.90
58 59 5.276270 CCCTACACACATATACACGTACAC 58.724 45.833 0.00 0.00 0.00 2.90
59 60 5.163632 CCCTACACACATATACACGTACACA 60.164 44.000 0.00 0.00 0.00 3.72
60 61 6.324042 CCTACACACATATACACGTACACAA 58.676 40.000 0.00 0.00 0.00 3.33
61 62 6.976349 CCTACACACATATACACGTACACAAT 59.024 38.462 0.00 0.00 0.00 2.71
62 63 8.130469 CCTACACACATATACACGTACACAATA 58.870 37.037 0.00 0.00 0.00 1.90
63 64 9.673454 CTACACACATATACACGTACACAATAT 57.327 33.333 0.00 0.00 0.00 1.28
65 66 9.454585 ACACACATATACACGTACACAATATAC 57.545 33.333 0.00 0.00 0.00 1.47
66 67 9.673454 CACACATATACACGTACACAATATACT 57.327 33.333 0.00 0.00 0.00 2.12
67 68 9.888878 ACACATATACACGTACACAATATACTC 57.111 33.333 0.00 0.00 0.00 2.59
68 69 9.887406 CACATATACACGTACACAATATACTCA 57.113 33.333 0.00 0.00 0.00 3.41
72 73 8.851960 ATACACGTACACAATATACTCAACAG 57.148 34.615 0.00 0.00 0.00 3.16
73 74 6.097356 ACACGTACACAATATACTCAACAGG 58.903 40.000 0.00 0.00 0.00 4.00
74 75 6.097356 CACGTACACAATATACTCAACAGGT 58.903 40.000 0.00 0.00 0.00 4.00
75 76 6.034577 CACGTACACAATATACTCAACAGGTG 59.965 42.308 0.00 0.00 0.00 4.00
76 77 5.518847 CGTACACAATATACTCAACAGGTGG 59.481 44.000 0.00 0.00 0.00 4.61
77 78 4.843728 ACACAATATACTCAACAGGTGGG 58.156 43.478 0.00 0.00 0.00 4.61
78 79 4.534500 ACACAATATACTCAACAGGTGGGA 59.466 41.667 0.00 0.00 0.00 4.37
79 80 5.013704 ACACAATATACTCAACAGGTGGGAA 59.986 40.000 0.00 0.00 0.00 3.97
80 81 5.586243 CACAATATACTCAACAGGTGGGAAG 59.414 44.000 0.00 0.00 0.00 3.46
81 82 5.487488 ACAATATACTCAACAGGTGGGAAGA 59.513 40.000 0.00 0.00 0.00 2.87
82 83 6.158695 ACAATATACTCAACAGGTGGGAAGAT 59.841 38.462 0.00 0.00 0.00 2.40
83 84 4.762289 ATACTCAACAGGTGGGAAGATC 57.238 45.455 0.00 0.00 0.00 2.75
84 85 2.338809 ACTCAACAGGTGGGAAGATCA 58.661 47.619 0.00 0.00 0.00 2.92
85 86 2.039084 ACTCAACAGGTGGGAAGATCAC 59.961 50.000 0.00 0.00 34.61 3.06
89 90 3.400188 GGTGGGAAGATCACCGGT 58.600 61.111 0.00 0.00 44.16 5.28
90 91 2.599216 GGTGGGAAGATCACCGGTA 58.401 57.895 6.87 0.00 44.16 4.02
91 92 0.464452 GGTGGGAAGATCACCGGTAG 59.536 60.000 6.87 1.53 44.16 3.18
92 93 0.179081 GTGGGAAGATCACCGGTAGC 60.179 60.000 6.87 0.00 0.00 3.58
93 94 0.325296 TGGGAAGATCACCGGTAGCT 60.325 55.000 6.87 1.22 0.00 3.32
94 95 0.389757 GGGAAGATCACCGGTAGCTC 59.610 60.000 6.87 4.24 0.00 4.09
95 96 0.389757 GGAAGATCACCGGTAGCTCC 59.610 60.000 6.87 5.66 0.00 4.70
96 97 1.404843 GAAGATCACCGGTAGCTCCT 58.595 55.000 6.87 0.00 0.00 3.69
97 98 1.067821 GAAGATCACCGGTAGCTCCTG 59.932 57.143 6.87 0.00 0.00 3.86
98 99 0.757188 AGATCACCGGTAGCTCCTGG 60.757 60.000 6.87 1.88 36.47 4.45
99 100 2.370647 GATCACCGGTAGCTCCTGGC 62.371 65.000 6.87 0.00 42.19 4.85
235 245 3.855503 CTGGGAAGCACAGCAGGCA 62.856 63.158 0.00 0.00 0.00 4.75
484 557 2.514516 CTTTTCCCCTCGCCCCCATT 62.515 60.000 0.00 0.00 0.00 3.16
485 558 2.100525 TTTTCCCCTCGCCCCCATTT 62.101 55.000 0.00 0.00 0.00 2.32
785 1044 7.667219 AGTGTCTATTCTTGAACACATCCAAAT 59.333 33.333 7.18 0.00 0.00 2.32
1074 1383 2.094182 GCTCGTGTTATCCTCTGGTTCA 60.094 50.000 0.00 0.00 0.00 3.18
1075 1384 3.430929 GCTCGTGTTATCCTCTGGTTCAT 60.431 47.826 0.00 0.00 0.00 2.57
1076 1385 4.759782 CTCGTGTTATCCTCTGGTTCATT 58.240 43.478 0.00 0.00 0.00 2.57
1077 1386 5.160607 TCGTGTTATCCTCTGGTTCATTT 57.839 39.130 0.00 0.00 0.00 2.32
1078 1387 6.288941 TCGTGTTATCCTCTGGTTCATTTA 57.711 37.500 0.00 0.00 0.00 1.40
1079 1388 6.884832 TCGTGTTATCCTCTGGTTCATTTAT 58.115 36.000 0.00 0.00 0.00 1.40
1080 1389 6.761242 TCGTGTTATCCTCTGGTTCATTTATG 59.239 38.462 0.00 0.00 0.00 1.90
1081 1390 6.511767 CGTGTTATCCTCTGGTTCATTTATGC 60.512 42.308 0.00 0.00 0.00 3.14
1082 1391 6.543831 GTGTTATCCTCTGGTTCATTTATGCT 59.456 38.462 0.00 0.00 0.00 3.79
1083 1392 6.767902 TGTTATCCTCTGGTTCATTTATGCTC 59.232 38.462 0.00 0.00 0.00 4.26
1084 1393 3.797039 TCCTCTGGTTCATTTATGCTCG 58.203 45.455 0.00 0.00 0.00 5.03
1085 1394 3.197766 TCCTCTGGTTCATTTATGCTCGT 59.802 43.478 0.00 0.00 0.00 4.18
1086 1395 3.310774 CCTCTGGTTCATTTATGCTCGTG 59.689 47.826 0.00 0.00 0.00 4.35
1087 1396 3.935203 CTCTGGTTCATTTATGCTCGTGT 59.065 43.478 0.00 0.00 0.00 4.49
1088 1397 4.323417 TCTGGTTCATTTATGCTCGTGTT 58.677 39.130 0.00 0.00 0.00 3.32
1089 1398 5.483811 TCTGGTTCATTTATGCTCGTGTTA 58.516 37.500 0.00 0.00 0.00 2.41
1090 1399 6.112734 TCTGGTTCATTTATGCTCGTGTTAT 58.887 36.000 0.00 0.00 0.00 1.89
1091 1400 6.257849 TCTGGTTCATTTATGCTCGTGTTATC 59.742 38.462 0.00 0.00 0.00 1.75
1092 1401 5.295787 TGGTTCATTTATGCTCGTGTTATCC 59.704 40.000 0.00 0.00 0.00 2.59
1093 1402 5.527582 GGTTCATTTATGCTCGTGTTATCCT 59.472 40.000 0.00 0.00 0.00 3.24
1094 1403 6.292919 GGTTCATTTATGCTCGTGTTATCCTC 60.293 42.308 0.00 0.00 0.00 3.71
1095 1404 6.161855 TCATTTATGCTCGTGTTATCCTCT 57.838 37.500 0.00 0.00 0.00 3.69
1096 1405 5.985530 TCATTTATGCTCGTGTTATCCTCTG 59.014 40.000 0.00 0.00 0.00 3.35
1097 1406 2.898729 ATGCTCGTGTTATCCTCTGG 57.101 50.000 0.00 0.00 0.00 3.86
1098 1407 1.557099 TGCTCGTGTTATCCTCTGGT 58.443 50.000 0.00 0.00 0.00 4.00
1316 1627 4.640201 GCTATGTTAAACTTGCTGATGGGA 59.360 41.667 0.00 0.00 0.00 4.37
1373 1684 8.868916 TGTTCTTGAGCAAATTACTTTTCAAAC 58.131 29.630 0.00 0.00 0.00 2.93
1486 1812 3.117888 CCCCTCTGCCTTATTTCTTAGCA 60.118 47.826 0.00 0.00 0.00 3.49
1781 2141 9.184523 GAGAGACACTAATATATACTGGATGCT 57.815 37.037 0.00 0.00 0.00 3.79
2278 2839 7.281040 ACAATGCATTATCCTTTCTACATGG 57.719 36.000 12.53 0.00 0.00 3.66
2410 2979 5.779771 TCTTGGGGAAAAGATGCAGTTAATT 59.220 36.000 0.00 0.00 31.19 1.40
2454 3024 2.564771 TGACTGCCTGTGAACAGAAAG 58.435 47.619 12.05 10.53 46.59 2.62
2680 3258 9.076596 GCTCCAACAAATGATTTAATAAGTCAC 57.923 33.333 0.22 0.00 0.00 3.67
2820 3672 7.534723 AATAAGGTAGTATATGGTCGCTTCA 57.465 36.000 0.00 0.00 0.00 3.02
3330 4238 1.269703 ACGTAGGACCATTGGACCCC 61.270 60.000 18.89 11.79 38.25 4.95
3331 4239 1.268992 CGTAGGACCATTGGACCCCA 61.269 60.000 18.89 6.33 38.25 4.96
3332 4240 1.222567 GTAGGACCATTGGACCCCAT 58.777 55.000 18.89 5.30 38.25 4.00
3333 4241 1.143073 GTAGGACCATTGGACCCCATC 59.857 57.143 18.89 0.71 38.25 3.51
3772 7242 5.164022 GGTTGAAACGGTGTAACTATTCTCG 60.164 44.000 0.87 0.00 36.74 4.04
4105 7602 7.419750 GGGATCCCATGAAGTTGTTATGTAGTA 60.420 40.741 26.95 0.00 35.81 1.82
4288 8572 2.364647 GTGTAATAGAGGGGGAGTTCGG 59.635 54.545 0.00 0.00 0.00 4.30
4371 9249 8.463930 TTTCCTCACTGAATTATGAAGTTTGT 57.536 30.769 0.00 0.00 0.00 2.83
4502 9381 2.051345 GTGCCCAAGTTCGCAACG 60.051 61.111 0.00 0.00 36.60 4.10
4658 9540 5.540337 TCGAATCTGCTAGGGAATCTATGTT 59.460 40.000 0.00 0.00 0.00 2.71
4659 9541 6.042093 TCGAATCTGCTAGGGAATCTATGTTT 59.958 38.462 0.00 0.00 0.00 2.83
4995 9888 2.276740 CTCCTGGGTTGGCCATCC 59.723 66.667 22.83 22.83 36.17 3.51
5035 9928 3.549423 GGTTTAGCACACGGGAAAGAAAC 60.549 47.826 0.00 0.00 0.00 2.78
5054 9953 9.476202 AAAGAAACCAATCATTTAAGCAGTTAC 57.524 29.630 0.00 0.00 0.00 2.50
5084 9983 4.274459 ACTTGTGAATCTCTGTTGTGCTTC 59.726 41.667 0.00 0.00 0.00 3.86
5179 10079 5.221342 CGGTCTTGCCTAGTCTCATCTAAAT 60.221 44.000 0.00 0.00 34.25 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.057894 TGTTTTCCTTGTATAGTTCAGGTTGT 58.942 34.615 0.00 0.00 0.00 3.32
1 2 7.308589 CCTGTTTTCCTTGTATAGTTCAGGTTG 60.309 40.741 0.00 0.00 35.46 3.77
2 3 6.715264 CCTGTTTTCCTTGTATAGTTCAGGTT 59.285 38.462 0.00 0.00 35.46 3.50
3 4 6.043938 TCCTGTTTTCCTTGTATAGTTCAGGT 59.956 38.462 0.00 0.00 39.46 4.00
4 5 6.472887 TCCTGTTTTCCTTGTATAGTTCAGG 58.527 40.000 0.00 0.00 39.70 3.86
5 6 7.386851 TCTCCTGTTTTCCTTGTATAGTTCAG 58.613 38.462 0.00 0.00 0.00 3.02
6 7 7.311092 TCTCCTGTTTTCCTTGTATAGTTCA 57.689 36.000 0.00 0.00 0.00 3.18
7 8 7.281100 CCATCTCCTGTTTTCCTTGTATAGTTC 59.719 40.741 0.00 0.00 0.00 3.01
8 9 7.112779 CCATCTCCTGTTTTCCTTGTATAGTT 58.887 38.462 0.00 0.00 0.00 2.24
9 10 6.353082 CCCATCTCCTGTTTTCCTTGTATAGT 60.353 42.308 0.00 0.00 0.00 2.12
10 11 6.058183 CCCATCTCCTGTTTTCCTTGTATAG 58.942 44.000 0.00 0.00 0.00 1.31
11 12 5.631481 GCCCATCTCCTGTTTTCCTTGTATA 60.631 44.000 0.00 0.00 0.00 1.47
12 13 4.860022 CCCATCTCCTGTTTTCCTTGTAT 58.140 43.478 0.00 0.00 0.00 2.29
13 14 3.561313 GCCCATCTCCTGTTTTCCTTGTA 60.561 47.826 0.00 0.00 0.00 2.41
14 15 2.819348 GCCCATCTCCTGTTTTCCTTGT 60.819 50.000 0.00 0.00 0.00 3.16
15 16 1.821136 GCCCATCTCCTGTTTTCCTTG 59.179 52.381 0.00 0.00 0.00 3.61
16 17 1.272704 GGCCCATCTCCTGTTTTCCTT 60.273 52.381 0.00 0.00 0.00 3.36
17 18 0.332972 GGCCCATCTCCTGTTTTCCT 59.667 55.000 0.00 0.00 0.00 3.36
18 19 0.684479 GGGCCCATCTCCTGTTTTCC 60.684 60.000 19.95 0.00 0.00 3.13
19 20 0.332972 AGGGCCCATCTCCTGTTTTC 59.667 55.000 27.56 0.00 31.11 2.29
20 21 1.285078 GTAGGGCCCATCTCCTGTTTT 59.715 52.381 27.56 0.00 34.75 2.43
21 22 0.919710 GTAGGGCCCATCTCCTGTTT 59.080 55.000 27.56 0.25 34.75 2.83
22 23 0.253160 TGTAGGGCCCATCTCCTGTT 60.253 55.000 27.56 1.16 34.75 3.16
23 24 0.983378 GTGTAGGGCCCATCTCCTGT 60.983 60.000 27.56 2.06 34.75 4.00
24 25 0.982852 TGTGTAGGGCCCATCTCCTG 60.983 60.000 27.56 0.00 34.75 3.86
25 26 0.983378 GTGTGTAGGGCCCATCTCCT 60.983 60.000 27.56 3.89 37.18 3.69
26 27 1.271840 TGTGTGTAGGGCCCATCTCC 61.272 60.000 27.56 8.11 0.00 3.71
27 28 0.839946 ATGTGTGTAGGGCCCATCTC 59.160 55.000 27.56 16.96 0.00 2.75
28 29 2.190398 TATGTGTGTAGGGCCCATCT 57.810 50.000 27.56 5.74 0.00 2.90
29 30 3.326588 TGTATATGTGTGTAGGGCCCATC 59.673 47.826 27.56 17.02 0.00 3.51
30 31 3.072476 GTGTATATGTGTGTAGGGCCCAT 59.928 47.826 27.56 12.06 0.00 4.00
31 32 2.436542 GTGTATATGTGTGTAGGGCCCA 59.563 50.000 27.56 7.27 0.00 5.36
32 33 2.547218 CGTGTATATGTGTGTAGGGCCC 60.547 54.545 16.46 16.46 0.00 5.80
33 34 2.101917 ACGTGTATATGTGTGTAGGGCC 59.898 50.000 0.00 0.00 0.00 5.80
34 35 3.447918 ACGTGTATATGTGTGTAGGGC 57.552 47.619 0.00 0.00 0.00 5.19
35 36 5.163632 TGTGTACGTGTATATGTGTGTAGGG 60.164 44.000 0.00 0.00 0.00 3.53
36 37 5.882553 TGTGTACGTGTATATGTGTGTAGG 58.117 41.667 0.00 0.00 0.00 3.18
37 38 7.980742 ATTGTGTACGTGTATATGTGTGTAG 57.019 36.000 0.00 0.00 0.00 2.74
39 40 9.454585 GTATATTGTGTACGTGTATATGTGTGT 57.545 33.333 0.00 0.00 0.00 3.72
40 41 9.673454 AGTATATTGTGTACGTGTATATGTGTG 57.327 33.333 0.00 0.00 0.00 3.82
41 42 9.888878 GAGTATATTGTGTACGTGTATATGTGT 57.111 33.333 0.00 0.00 0.00 3.72
42 43 9.887406 TGAGTATATTGTGTACGTGTATATGTG 57.113 33.333 0.00 0.00 0.00 3.21
46 47 9.940166 CTGTTGAGTATATTGTGTACGTGTATA 57.060 33.333 0.00 0.00 0.00 1.47
47 48 7.919091 CCTGTTGAGTATATTGTGTACGTGTAT 59.081 37.037 0.00 0.00 0.00 2.29
48 49 7.094248 ACCTGTTGAGTATATTGTGTACGTGTA 60.094 37.037 0.00 0.00 0.00 2.90
49 50 6.097356 CCTGTTGAGTATATTGTGTACGTGT 58.903 40.000 0.00 0.00 0.00 4.49
50 51 6.034577 CACCTGTTGAGTATATTGTGTACGTG 59.965 42.308 0.00 0.00 0.00 4.49
51 52 6.097356 CACCTGTTGAGTATATTGTGTACGT 58.903 40.000 0.00 0.00 0.00 3.57
52 53 5.518847 CCACCTGTTGAGTATATTGTGTACG 59.481 44.000 0.00 0.00 0.00 3.67
53 54 5.815740 CCCACCTGTTGAGTATATTGTGTAC 59.184 44.000 0.00 0.00 0.00 2.90
54 55 5.722441 TCCCACCTGTTGAGTATATTGTGTA 59.278 40.000 0.00 0.00 0.00 2.90
55 56 4.534500 TCCCACCTGTTGAGTATATTGTGT 59.466 41.667 0.00 0.00 0.00 3.72
56 57 5.097742 TCCCACCTGTTGAGTATATTGTG 57.902 43.478 0.00 0.00 0.00 3.33
57 58 5.487488 TCTTCCCACCTGTTGAGTATATTGT 59.513 40.000 0.00 0.00 0.00 2.71
58 59 5.989477 TCTTCCCACCTGTTGAGTATATTG 58.011 41.667 0.00 0.00 0.00 1.90
59 60 6.386927 TGATCTTCCCACCTGTTGAGTATATT 59.613 38.462 0.00 0.00 0.00 1.28
60 61 5.905331 TGATCTTCCCACCTGTTGAGTATAT 59.095 40.000 0.00 0.00 0.00 0.86
61 62 5.128827 GTGATCTTCCCACCTGTTGAGTATA 59.871 44.000 0.00 0.00 0.00 1.47
62 63 4.080863 GTGATCTTCCCACCTGTTGAGTAT 60.081 45.833 0.00 0.00 0.00 2.12
63 64 3.260884 GTGATCTTCCCACCTGTTGAGTA 59.739 47.826 0.00 0.00 0.00 2.59
64 65 2.039084 GTGATCTTCCCACCTGTTGAGT 59.961 50.000 0.00 0.00 0.00 3.41
65 66 2.704572 GTGATCTTCCCACCTGTTGAG 58.295 52.381 0.00 0.00 0.00 3.02
66 67 2.859165 GTGATCTTCCCACCTGTTGA 57.141 50.000 0.00 0.00 0.00 3.18
73 74 0.179081 GCTACCGGTGATCTTCCCAC 60.179 60.000 19.93 0.00 0.00 4.61
74 75 0.325296 AGCTACCGGTGATCTTCCCA 60.325 55.000 19.93 0.00 0.00 4.37
75 76 0.389757 GAGCTACCGGTGATCTTCCC 59.610 60.000 19.93 0.00 0.00 3.97
76 77 0.389757 GGAGCTACCGGTGATCTTCC 59.610 60.000 19.93 13.02 0.00 3.46
77 78 1.067821 CAGGAGCTACCGGTGATCTTC 59.932 57.143 19.93 10.01 44.74 2.87
78 79 1.115467 CAGGAGCTACCGGTGATCTT 58.885 55.000 19.93 9.21 44.74 2.40
79 80 0.757188 CCAGGAGCTACCGGTGATCT 60.757 60.000 19.93 11.22 44.74 2.75
80 81 1.742768 CCAGGAGCTACCGGTGATC 59.257 63.158 19.93 15.13 44.74 2.92
81 82 2.435693 GCCAGGAGCTACCGGTGAT 61.436 63.158 19.93 5.84 44.74 3.06
82 83 3.075005 GCCAGGAGCTACCGGTGA 61.075 66.667 19.93 0.00 44.74 4.02
107 108 6.016024 GGGAAATACTACCGGAAAGTGTTTTT 60.016 38.462 25.05 19.05 38.08 1.94
108 109 5.474532 GGGAAATACTACCGGAAAGTGTTTT 59.525 40.000 25.05 20.65 38.08 2.43
109 110 5.005740 GGGAAATACTACCGGAAAGTGTTT 58.994 41.667 24.77 24.77 39.89 2.83
110 111 4.287845 AGGGAAATACTACCGGAAAGTGTT 59.712 41.667 19.99 17.19 30.58 3.32
111 112 3.842436 AGGGAAATACTACCGGAAAGTGT 59.158 43.478 19.99 13.01 0.00 3.55
112 113 4.189231 CAGGGAAATACTACCGGAAAGTG 58.811 47.826 19.99 4.00 0.00 3.16
113 114 3.842436 ACAGGGAAATACTACCGGAAAGT 59.158 43.478 9.46 14.13 0.00 2.66
114 115 4.482952 ACAGGGAAATACTACCGGAAAG 57.517 45.455 9.46 7.88 0.00 2.62
115 116 5.271598 TCTACAGGGAAATACTACCGGAAA 58.728 41.667 9.46 0.00 0.00 3.13
116 117 4.870636 TCTACAGGGAAATACTACCGGAA 58.129 43.478 9.46 0.00 0.00 4.30
117 118 4.524802 TCTACAGGGAAATACTACCGGA 57.475 45.455 9.46 0.00 0.00 5.14
118 119 4.560919 GCATCTACAGGGAAATACTACCGG 60.561 50.000 0.00 0.00 0.00 5.28
119 120 4.281182 AGCATCTACAGGGAAATACTACCG 59.719 45.833 0.00 0.00 0.00 4.02
738 997 5.121925 CACTTGGAATTCACATGAGAGACTG 59.878 44.000 7.93 0.00 0.00 3.51
1074 1383 5.163301 ACCAGAGGATAACACGAGCATAAAT 60.163 40.000 0.00 0.00 0.00 1.40
1075 1384 4.161565 ACCAGAGGATAACACGAGCATAAA 59.838 41.667 0.00 0.00 0.00 1.40
1076 1385 3.704566 ACCAGAGGATAACACGAGCATAA 59.295 43.478 0.00 0.00 0.00 1.90
1077 1386 3.296854 ACCAGAGGATAACACGAGCATA 58.703 45.455 0.00 0.00 0.00 3.14
1078 1387 2.111384 ACCAGAGGATAACACGAGCAT 58.889 47.619 0.00 0.00 0.00 3.79
1079 1388 1.557099 ACCAGAGGATAACACGAGCA 58.443 50.000 0.00 0.00 0.00 4.26
1080 1389 2.094182 TGAACCAGAGGATAACACGAGC 60.094 50.000 0.00 0.00 0.00 5.03
1081 1390 3.868757 TGAACCAGAGGATAACACGAG 57.131 47.619 0.00 0.00 0.00 4.18
1082 1391 4.819105 AATGAACCAGAGGATAACACGA 57.181 40.909 0.00 0.00 0.00 4.35
1083 1392 6.511767 GCATAAATGAACCAGAGGATAACACG 60.512 42.308 0.00 0.00 0.00 4.49
1084 1393 6.543831 AGCATAAATGAACCAGAGGATAACAC 59.456 38.462 0.00 0.00 0.00 3.32
1085 1394 6.662755 AGCATAAATGAACCAGAGGATAACA 58.337 36.000 0.00 0.00 0.00 2.41
1086 1395 7.067494 ACAAGCATAAATGAACCAGAGGATAAC 59.933 37.037 0.00 0.00 0.00 1.89
1087 1396 7.067372 CACAAGCATAAATGAACCAGAGGATAA 59.933 37.037 0.00 0.00 0.00 1.75
1088 1397 6.543465 CACAAGCATAAATGAACCAGAGGATA 59.457 38.462 0.00 0.00 0.00 2.59
1089 1398 5.359009 CACAAGCATAAATGAACCAGAGGAT 59.641 40.000 0.00 0.00 0.00 3.24
1090 1399 4.701651 CACAAGCATAAATGAACCAGAGGA 59.298 41.667 0.00 0.00 0.00 3.71
1091 1400 4.676196 GCACAAGCATAAATGAACCAGAGG 60.676 45.833 0.00 0.00 41.58 3.69
1092 1401 4.418392 GCACAAGCATAAATGAACCAGAG 58.582 43.478 0.00 0.00 41.58 3.35
1093 1402 4.439305 GCACAAGCATAAATGAACCAGA 57.561 40.909 0.00 0.00 41.58 3.86
1251 1561 1.271108 TGCCGTTGGACAGATGCTTAA 60.271 47.619 0.00 0.00 0.00 1.85
1316 1627 2.560105 GAGGAAGAATTGGCAGCAGTTT 59.440 45.455 0.00 0.00 0.00 2.66
1373 1684 9.901724 GTAAATATCATTCAACTAGTCAACGTG 57.098 33.333 0.00 0.00 0.00 4.49
1486 1812 4.398319 CATCTAACTCCCAGTTGGTGTTT 58.602 43.478 6.06 0.00 46.15 2.83
1609 1941 4.554960 AGGTCTACTTTAGCACCCTTTC 57.445 45.455 0.00 0.00 30.89 2.62
1656 1988 0.468226 ACCGCTTGTTCCAGAGACAA 59.532 50.000 0.00 0.00 35.81 3.18
1737 2097 8.917655 GTGTCTCTCTCAAGAATTACTACAAAC 58.082 37.037 0.00 0.00 0.00 2.93
2410 2979 7.826744 TCAACTTACCTATGCACAATTCACATA 59.173 33.333 0.00 0.00 0.00 2.29
2454 3024 7.771183 TCAGTAAAGAAAACCATATGATTGCC 58.229 34.615 3.65 0.00 0.00 4.52
2680 3258 1.067354 GCAAAAAGGCATGTCTCCCTG 60.067 52.381 0.00 0.00 0.00 4.45
2889 3744 8.958119 AGGTTATTTGTCACGTGTATGATTAT 57.042 30.769 16.51 4.30 0.00 1.28
3009 3869 2.119495 GGGGACTGGAGCTCTTGAATA 58.881 52.381 14.64 0.00 0.00 1.75
3061 3921 2.069273 GTCTTGTGTGACTCATTCGGG 58.931 52.381 0.00 0.00 34.39 5.14
3094 3954 1.870055 CTGTGGTTGCATGGCTGGTC 61.870 60.000 0.00 0.00 0.00 4.02
3243 4151 1.820519 TGGCTCCTTTTAGCTGCAATG 59.179 47.619 1.02 0.00 42.37 2.82
3330 4238 0.034767 TTTCAGCTGAGGCAGGGATG 60.035 55.000 17.43 0.00 41.70 3.51
3331 4239 0.700564 TTTTCAGCTGAGGCAGGGAT 59.299 50.000 17.43 0.00 41.70 3.85
3332 4240 0.478072 TTTTTCAGCTGAGGCAGGGA 59.522 50.000 17.43 0.00 41.70 4.20
3333 4241 3.040965 TTTTTCAGCTGAGGCAGGG 57.959 52.632 17.43 0.00 41.70 4.45
3621 7083 4.509230 CACAACATGTGCTATAGCCTACAG 59.491 45.833 21.84 14.71 41.89 2.74
3622 7084 4.441792 CACAACATGTGCTATAGCCTACA 58.558 43.478 21.84 19.38 41.89 2.74
4072 7568 1.274728 CTTCATGGGATCCCTAGCTCG 59.725 57.143 31.05 12.85 36.94 5.03
4105 7602 1.561076 TGCTACAGATGCCCAGACATT 59.439 47.619 0.00 0.00 0.00 2.71
4288 8572 3.816994 ACTCAAGTGTGGGGTTAAAGAC 58.183 45.455 0.00 0.00 0.00 3.01
4371 9249 0.625316 ACCCTGTTGATGCAGCCATA 59.375 50.000 0.00 0.00 35.28 2.74
4502 9381 2.226674 AGCTTCTTCTTTTGTAAGGCGC 59.773 45.455 0.00 0.00 32.02 6.53
4658 9540 1.600636 CGCCACTTCCTGAAGGCAA 60.601 57.895 11.34 0.00 42.53 4.52
4659 9541 2.032528 CGCCACTTCCTGAAGGCA 59.967 61.111 11.34 0.00 42.53 4.75
4802 9691 2.226200 CGATCAGTGTGCAAACATTGGA 59.774 45.455 10.29 1.51 0.00 3.53
4995 9888 5.379706 AAACCAGGAGAGGAATAAGATGG 57.620 43.478 0.00 0.00 0.00 3.51
5035 9928 6.817270 GCATGTAACTGCTTAAATGATTGG 57.183 37.500 0.00 0.00 39.12 3.16
5054 9953 4.001652 ACAGAGATTCACAAGTCAGCATG 58.998 43.478 0.00 0.00 37.54 4.06
5084 9983 0.107654 GGAACGGGTCTCCTTCATGG 60.108 60.000 0.00 0.00 37.10 3.66
5179 10079 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.