Multiple sequence alignment - TraesCS3B01G355100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G355100 chr3B 100.000 3056 0 0 1 3056 565415488 565412433 0.000000e+00 5644.0
1 TraesCS3B01G355100 chr3B 84.573 1277 143 24 699 1930 565542908 565541641 0.000000e+00 1218.0
2 TraesCS3B01G355100 chr3B 88.372 301 35 0 1630 1930 565428089 565427789 2.240000e-96 363.0
3 TraesCS3B01G355100 chr3B 88.421 190 21 1 1931 2119 565427836 565427647 8.520000e-56 228.0
4 TraesCS3B01G355100 chr3A 88.462 1170 95 21 788 1930 571317194 571316038 0.000000e+00 1376.0
5 TraesCS3B01G355100 chr3A 84.439 392 53 3 1547 1930 571334896 571334505 2.220000e-101 379.0
6 TraesCS3B01G355100 chr3A 85.044 341 47 2 963 1299 571356589 571356249 8.110000e-91 344.0
7 TraesCS3B01G355100 chr3A 85.537 242 22 8 613 845 571394973 571394736 1.090000e-59 241.0
8 TraesCS3B01G355100 chr3A 85.567 194 23 4 1931 2119 571334553 571334360 6.680000e-47 198.0
9 TraesCS3B01G355100 chr3A 95.726 117 2 1 508 621 571330436 571330320 5.200000e-43 185.0
10 TraesCS3B01G355100 chr3A 89.147 129 7 2 622 743 571325907 571325779 1.470000e-33 154.0
11 TraesCS3B01G355100 chr3A 85.938 128 16 2 1293 1419 571335023 571334897 5.310000e-28 135.0
12 TraesCS3B01G355100 chr1A 92.708 864 61 1 2191 3054 143147481 143148342 0.000000e+00 1245.0
13 TraesCS3B01G355100 chr7A 93.036 718 43 4 2191 2908 620928997 620928287 0.000000e+00 1042.0
14 TraesCS3B01G355100 chr7A 92.667 150 11 0 2904 3053 620911657 620911508 1.850000e-52 217.0
15 TraesCS3B01G355100 chr7A 75.192 391 65 15 1487 1852 707100268 707099885 4.080000e-34 156.0
16 TraesCS3B01G355100 chr3D 85.386 958 106 14 945 1868 433164366 433163409 0.000000e+00 963.0
17 TraesCS3B01G355100 chr3D 87.077 650 47 13 620 1237 433159299 433158655 0.000000e+00 701.0
18 TraesCS3B01G355100 chr3D 89.669 242 13 7 613 845 433172638 433172400 6.410000e-77 298.0
19 TraesCS3B01G355100 chr3D 89.677 155 16 0 1960 2114 433163428 433163274 6.680000e-47 198.0
20 TraesCS3B01G355100 chr6B 87.742 155 17 2 2189 2343 202538709 202538557 2.420000e-41 180.0
21 TraesCS3B01G355100 chr6D 87.582 153 17 2 2191 2343 264273615 264273765 3.130000e-40 176.0
22 TraesCS3B01G355100 chr4B 87.013 154 16 4 2191 2343 611287190 611287040 1.460000e-38 171.0
23 TraesCS3B01G355100 chr4B 86.364 154 17 4 2191 2343 611248904 611248754 6.780000e-37 165.0
24 TraesCS3B01G355100 chr5B 85.714 161 22 1 2191 2351 522136159 522136000 5.240000e-38 169.0
25 TraesCS3B01G355100 chr7B 86.842 152 17 3 2192 2343 317781403 317781551 1.880000e-37 167.0
26 TraesCS3B01G355100 chr5D 85.093 161 23 1 2191 2351 433930150 433930309 2.440000e-36 163.0
27 TraesCS3B01G355100 chr2A 82.114 123 20 2 274 396 751831324 751831444 1.500000e-18 104.0
28 TraesCS3B01G355100 chr5A 87.931 58 5 2 345 401 428257241 428257297 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G355100 chr3B 565412433 565415488 3055 True 5644.000000 5644 100.0000 1 3056 1 chr3B.!!$R1 3055
1 TraesCS3B01G355100 chr3B 565541641 565542908 1267 True 1218.000000 1218 84.5730 699 1930 1 chr3B.!!$R2 1231
2 TraesCS3B01G355100 chr3A 571316038 571317194 1156 True 1376.000000 1376 88.4620 788 1930 1 chr3A.!!$R1 1142
3 TraesCS3B01G355100 chr3A 571330320 571335023 4703 True 224.250000 379 87.9175 508 2119 4 chr3A.!!$R5 1611
4 TraesCS3B01G355100 chr1A 143147481 143148342 861 False 1245.000000 1245 92.7080 2191 3054 1 chr1A.!!$F1 863
5 TraesCS3B01G355100 chr7A 620928287 620928997 710 True 1042.000000 1042 93.0360 2191 2908 1 chr7A.!!$R2 717
6 TraesCS3B01G355100 chr3D 433158655 433164366 5711 True 620.666667 963 87.3800 620 2114 3 chr3D.!!$R2 1494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 418 0.034089 GGAAGGAAGTGGTGGATGGG 60.034 60.0 0.0 0.0 0.0 4.00 F
1716 1830 0.037590 TCGAGGGGGTGGTCAATTTG 59.962 55.0 0.0 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2036 0.178068 GCTCGGCTTCTCCACCATTA 59.822 55.0 0.0 0.0 34.01 1.90 R
2876 8473 0.679960 AATAAGGCGAAGGGGTGTGC 60.680 55.0 0.0 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.369381 CCTCTGCCACAATACCGAG 57.631 57.895 0.00 0.00 0.00 4.63
19 20 0.811616 CCTCTGCCACAATACCGAGC 60.812 60.000 0.00 0.00 0.00 5.03
20 21 0.108186 CTCTGCCACAATACCGAGCA 60.108 55.000 0.00 0.00 0.00 4.26
21 22 0.323302 TCTGCCACAATACCGAGCAA 59.677 50.000 0.00 0.00 32.14 3.91
22 23 0.729116 CTGCCACAATACCGAGCAAG 59.271 55.000 0.00 0.00 32.14 4.01
23 24 0.323302 TGCCACAATACCGAGCAAGA 59.677 50.000 0.00 0.00 0.00 3.02
24 25 1.009829 GCCACAATACCGAGCAAGAG 58.990 55.000 0.00 0.00 0.00 2.85
25 26 1.009829 CCACAATACCGAGCAAGAGC 58.990 55.000 0.00 0.00 42.56 4.09
26 27 1.009829 CACAATACCGAGCAAGAGCC 58.990 55.000 0.00 0.00 43.56 4.70
27 28 0.107654 ACAATACCGAGCAAGAGCCC 60.108 55.000 0.00 0.00 43.56 5.19
28 29 1.144057 AATACCGAGCAAGAGCCCG 59.856 57.895 0.00 0.00 42.09 6.13
29 30 2.925162 AATACCGAGCAAGAGCCCGC 62.925 60.000 0.00 0.00 41.00 6.13
48 49 2.046700 CGGCGGCAACCCTCTTTA 60.047 61.111 10.53 0.00 0.00 1.85
49 50 2.106683 CGGCGGCAACCCTCTTTAG 61.107 63.158 10.53 0.00 0.00 1.85
50 51 1.298667 GGCGGCAACCCTCTTTAGA 59.701 57.895 3.07 0.00 0.00 2.10
51 52 0.107165 GGCGGCAACCCTCTTTAGAT 60.107 55.000 3.07 0.00 0.00 1.98
52 53 1.300481 GCGGCAACCCTCTTTAGATC 58.700 55.000 0.00 0.00 0.00 2.75
53 54 1.954927 CGGCAACCCTCTTTAGATCC 58.045 55.000 0.00 0.00 0.00 3.36
54 55 1.209504 CGGCAACCCTCTTTAGATCCA 59.790 52.381 0.00 0.00 0.00 3.41
55 56 2.355716 CGGCAACCCTCTTTAGATCCAA 60.356 50.000 0.00 0.00 0.00 3.53
56 57 3.017442 GGCAACCCTCTTTAGATCCAAC 58.983 50.000 0.00 0.00 0.00 3.77
57 58 3.561313 GGCAACCCTCTTTAGATCCAACA 60.561 47.826 0.00 0.00 0.00 3.33
58 59 3.691609 GCAACCCTCTTTAGATCCAACAG 59.308 47.826 0.00 0.00 0.00 3.16
59 60 4.265073 CAACCCTCTTTAGATCCAACAGG 58.735 47.826 0.00 0.00 0.00 4.00
60 61 2.846827 ACCCTCTTTAGATCCAACAGGG 59.153 50.000 13.00 13.00 39.78 4.45
61 62 2.173569 CCCTCTTTAGATCCAACAGGGG 59.826 54.545 8.53 1.23 37.22 4.79
62 63 2.422093 CCTCTTTAGATCCAACAGGGGC 60.422 54.545 0.00 0.00 37.22 5.80
63 64 2.507471 CTCTTTAGATCCAACAGGGGCT 59.493 50.000 0.00 0.00 37.22 5.19
64 65 2.505819 TCTTTAGATCCAACAGGGGCTC 59.494 50.000 0.00 0.00 37.22 4.70
65 66 0.830648 TTAGATCCAACAGGGGCTCG 59.169 55.000 0.00 0.00 37.22 5.03
66 67 1.686325 TAGATCCAACAGGGGCTCGC 61.686 60.000 0.00 0.00 37.22 5.03
67 68 4.115199 ATCCAACAGGGGCTCGCC 62.115 66.667 0.00 0.00 37.22 5.54
134 135 3.818787 CAGCCAACCCTGCATCGC 61.819 66.667 0.00 0.00 0.00 4.58
154 155 3.449227 CCCGTGCCGCTCAGTAGA 61.449 66.667 0.00 0.00 0.00 2.59
155 156 2.103143 CCGTGCCGCTCAGTAGAG 59.897 66.667 0.00 0.00 44.96 2.43
156 157 2.103143 CGTGCCGCTCAGTAGAGG 59.897 66.667 0.00 0.00 44.99 3.69
157 158 2.407428 CGTGCCGCTCAGTAGAGGA 61.407 63.158 0.00 0.00 45.01 3.71
158 159 1.435515 GTGCCGCTCAGTAGAGGAG 59.564 63.158 0.00 0.00 45.01 3.69
165 166 1.398692 CTCAGTAGAGGAGCTCCACC 58.601 60.000 33.90 23.82 38.26 4.61
166 167 0.704664 TCAGTAGAGGAGCTCCACCA 59.295 55.000 33.90 15.29 38.89 4.17
167 168 1.289231 TCAGTAGAGGAGCTCCACCAT 59.711 52.381 33.90 18.22 38.89 3.55
168 169 1.686052 CAGTAGAGGAGCTCCACCATC 59.314 57.143 33.90 21.98 38.89 3.51
169 170 0.671251 GTAGAGGAGCTCCACCATCG 59.329 60.000 33.90 0.00 38.89 3.84
170 171 1.109920 TAGAGGAGCTCCACCATCGC 61.110 60.000 33.90 13.48 38.89 4.58
171 172 3.781770 GAGGAGCTCCACCATCGCG 62.782 68.421 33.90 0.00 38.89 5.87
175 176 4.221422 GCTCCACCATCGCGCCTA 62.221 66.667 0.00 0.00 0.00 3.93
176 177 2.499205 CTCCACCATCGCGCCTAA 59.501 61.111 0.00 0.00 0.00 2.69
177 178 1.883084 CTCCACCATCGCGCCTAAC 60.883 63.158 0.00 0.00 0.00 2.34
178 179 2.895372 CCACCATCGCGCCTAACC 60.895 66.667 0.00 0.00 0.00 2.85
179 180 2.895372 CACCATCGCGCCTAACCC 60.895 66.667 0.00 0.00 0.00 4.11
180 181 3.395702 ACCATCGCGCCTAACCCA 61.396 61.111 0.00 0.00 0.00 4.51
181 182 2.124901 CCATCGCGCCTAACCCAA 60.125 61.111 0.00 0.00 0.00 4.12
182 183 2.469516 CCATCGCGCCTAACCCAAC 61.470 63.158 0.00 0.00 0.00 3.77
183 184 1.743623 CATCGCGCCTAACCCAACA 60.744 57.895 0.00 0.00 0.00 3.33
184 185 1.449601 ATCGCGCCTAACCCAACAG 60.450 57.895 0.00 0.00 0.00 3.16
185 186 1.895020 ATCGCGCCTAACCCAACAGA 61.895 55.000 0.00 0.00 0.00 3.41
186 187 1.449601 CGCGCCTAACCCAACAGAT 60.450 57.895 0.00 0.00 0.00 2.90
187 188 1.429148 CGCGCCTAACCCAACAGATC 61.429 60.000 0.00 0.00 0.00 2.75
188 189 1.095807 GCGCCTAACCCAACAGATCC 61.096 60.000 0.00 0.00 0.00 3.36
189 190 0.810031 CGCCTAACCCAACAGATCCG 60.810 60.000 0.00 0.00 0.00 4.18
190 191 1.095807 GCCTAACCCAACAGATCCGC 61.096 60.000 0.00 0.00 0.00 5.54
191 192 0.810031 CCTAACCCAACAGATCCGCG 60.810 60.000 0.00 0.00 0.00 6.46
192 193 1.429148 CTAACCCAACAGATCCGCGC 61.429 60.000 0.00 0.00 0.00 6.86
193 194 2.862674 TAACCCAACAGATCCGCGCC 62.863 60.000 0.00 0.00 0.00 6.53
235 236 4.694233 CGCCTCTGTGCACTGCCT 62.694 66.667 19.41 0.00 0.00 4.75
236 237 2.745492 GCCTCTGTGCACTGCCTC 60.745 66.667 19.41 5.87 0.00 4.70
237 238 2.433838 CCTCTGTGCACTGCCTCG 60.434 66.667 19.41 6.76 0.00 4.63
238 239 2.341543 CTCTGTGCACTGCCTCGT 59.658 61.111 19.41 0.00 0.00 4.18
239 240 1.735920 CTCTGTGCACTGCCTCGTC 60.736 63.158 19.41 0.00 0.00 4.20
240 241 3.108289 CTGTGCACTGCCTCGTCG 61.108 66.667 19.41 0.00 0.00 5.12
241 242 4.662961 TGTGCACTGCCTCGTCGG 62.663 66.667 19.41 0.00 0.00 4.79
271 272 2.807045 CCACGAGCACGAGCAGTC 60.807 66.667 11.40 0.00 45.49 3.51
283 284 4.863925 GCAGTCGCTCGAGCTCCC 62.864 72.222 32.88 20.31 39.32 4.30
284 285 4.544689 CAGTCGCTCGAGCTCCCG 62.545 72.222 32.88 18.67 39.32 5.14
290 291 4.560856 CTCGAGCTCCCGCCGAAG 62.561 72.222 8.47 0.00 38.00 3.79
317 318 4.569023 CGCGCCAGCCATCTCGTA 62.569 66.667 0.00 0.00 41.18 3.43
318 319 2.962253 GCGCCAGCCATCTCGTAC 60.962 66.667 0.00 0.00 37.42 3.67
319 320 2.494445 CGCCAGCCATCTCGTACA 59.506 61.111 0.00 0.00 0.00 2.90
320 321 1.068083 CGCCAGCCATCTCGTACAT 59.932 57.895 0.00 0.00 0.00 2.29
321 322 1.217585 CGCCAGCCATCTCGTACATG 61.218 60.000 0.00 0.00 0.00 3.21
322 323 0.104855 GCCAGCCATCTCGTACATGA 59.895 55.000 0.00 0.00 0.00 3.07
323 324 1.871408 GCCAGCCATCTCGTACATGAG 60.871 57.143 0.00 0.00 37.33 2.90
324 325 1.269988 CCAGCCATCTCGTACATGAGG 60.270 57.143 0.00 0.00 36.61 3.86
325 326 1.683385 CAGCCATCTCGTACATGAGGA 59.317 52.381 0.00 0.00 36.61 3.71
326 327 1.959985 AGCCATCTCGTACATGAGGAG 59.040 52.381 0.00 4.23 40.75 3.69
346 347 1.966762 AAAAATGGTCCAGCTGCCG 59.033 52.632 8.66 0.00 0.00 5.69
347 348 2.158561 AAAAATGGTCCAGCTGCCGC 62.159 55.000 8.66 0.00 0.00 6.53
405 406 2.687566 GGCGAGGGGAGGAAGGAA 60.688 66.667 0.00 0.00 0.00 3.36
406 407 2.736826 GGCGAGGGGAGGAAGGAAG 61.737 68.421 0.00 0.00 0.00 3.46
407 408 1.990614 GCGAGGGGAGGAAGGAAGT 60.991 63.158 0.00 0.00 0.00 3.01
408 409 1.901085 CGAGGGGAGGAAGGAAGTG 59.099 63.158 0.00 0.00 0.00 3.16
409 410 1.617947 CGAGGGGAGGAAGGAAGTGG 61.618 65.000 0.00 0.00 0.00 4.00
410 411 0.547954 GAGGGGAGGAAGGAAGTGGT 60.548 60.000 0.00 0.00 0.00 4.16
411 412 0.842467 AGGGGAGGAAGGAAGTGGTG 60.842 60.000 0.00 0.00 0.00 4.17
412 413 1.685820 GGGAGGAAGGAAGTGGTGG 59.314 63.158 0.00 0.00 0.00 4.61
413 414 0.840722 GGGAGGAAGGAAGTGGTGGA 60.841 60.000 0.00 0.00 0.00 4.02
414 415 1.290134 GGAGGAAGGAAGTGGTGGAT 58.710 55.000 0.00 0.00 0.00 3.41
415 416 1.065126 GGAGGAAGGAAGTGGTGGATG 60.065 57.143 0.00 0.00 0.00 3.51
416 417 0.995024 AGGAAGGAAGTGGTGGATGG 59.005 55.000 0.00 0.00 0.00 3.51
417 418 0.034089 GGAAGGAAGTGGTGGATGGG 60.034 60.000 0.00 0.00 0.00 4.00
418 419 0.698818 GAAGGAAGTGGTGGATGGGT 59.301 55.000 0.00 0.00 0.00 4.51
419 420 1.075536 GAAGGAAGTGGTGGATGGGTT 59.924 52.381 0.00 0.00 0.00 4.11
420 421 0.405585 AGGAAGTGGTGGATGGGTTG 59.594 55.000 0.00 0.00 0.00 3.77
421 422 1.250840 GGAAGTGGTGGATGGGTTGC 61.251 60.000 0.00 0.00 0.00 4.17
422 423 0.251341 GAAGTGGTGGATGGGTTGCT 60.251 55.000 0.00 0.00 0.00 3.91
423 424 0.540365 AAGTGGTGGATGGGTTGCTG 60.540 55.000 0.00 0.00 0.00 4.41
424 425 1.978617 GTGGTGGATGGGTTGCTGG 60.979 63.158 0.00 0.00 0.00 4.85
425 426 3.070576 GGTGGATGGGTTGCTGGC 61.071 66.667 0.00 0.00 0.00 4.85
426 427 2.283101 GTGGATGGGTTGCTGGCA 60.283 61.111 0.00 0.00 0.00 4.92
427 428 2.036098 TGGATGGGTTGCTGGCAG 59.964 61.111 10.94 10.94 0.00 4.85
428 429 3.455469 GGATGGGTTGCTGGCAGC 61.455 66.667 31.91 31.91 42.82 5.25
429 430 3.818787 GATGGGTTGCTGGCAGCG 61.819 66.667 32.12 1.61 46.26 5.18
446 447 4.815108 GGGGGCGGCTAGGGTTTG 62.815 72.222 9.56 0.00 0.00 2.93
449 450 4.426313 GGCGGCTAGGGTTTGCCT 62.426 66.667 0.00 0.00 46.42 4.75
450 451 2.824489 GCGGCTAGGGTTTGCCTC 60.824 66.667 0.00 0.00 46.42 4.70
451 452 2.990479 CGGCTAGGGTTTGCCTCT 59.010 61.111 0.00 0.00 46.42 3.69
452 453 1.450312 CGGCTAGGGTTTGCCTCTG 60.450 63.158 0.00 0.00 46.42 3.35
453 454 1.077429 GGCTAGGGTTTGCCTCTGG 60.077 63.158 0.00 0.00 45.26 3.86
454 455 1.077429 GCTAGGGTTTGCCTCTGGG 60.077 63.158 0.00 0.00 34.45 4.45
478 479 4.803426 GCCGGAGCGACACAGGAG 62.803 72.222 5.05 0.00 0.00 3.69
479 480 3.062466 CCGGAGCGACACAGGAGA 61.062 66.667 0.00 0.00 0.00 3.71
480 481 2.179517 CGGAGCGACACAGGAGAC 59.820 66.667 0.00 0.00 0.00 3.36
481 482 2.574399 GGAGCGACACAGGAGACC 59.426 66.667 0.00 0.00 0.00 3.85
482 483 2.179517 GAGCGACACAGGAGACCG 59.820 66.667 0.00 0.00 0.00 4.79
483 484 3.973267 GAGCGACACAGGAGACCGC 62.973 68.421 0.00 0.00 45.39 5.68
485 486 4.778415 CGACACAGGAGACCGCCG 62.778 72.222 0.00 0.00 0.00 6.46
486 487 3.681835 GACACAGGAGACCGCCGT 61.682 66.667 0.00 0.00 0.00 5.68
487 488 3.916392 GACACAGGAGACCGCCGTG 62.916 68.421 10.93 10.93 37.96 4.94
490 491 4.803426 CAGGAGACCGCCGTGCTC 62.803 72.222 0.00 0.00 0.00 4.26
492 493 4.373116 GGAGACCGCCGTGCTCAA 62.373 66.667 5.93 0.00 0.00 3.02
493 494 2.357034 GAGACCGCCGTGCTCAAA 60.357 61.111 0.00 0.00 0.00 2.69
494 495 1.959226 GAGACCGCCGTGCTCAAAA 60.959 57.895 0.00 0.00 0.00 2.44
495 496 2.171489 GAGACCGCCGTGCTCAAAAC 62.171 60.000 0.00 0.00 0.00 2.43
496 497 2.203153 ACCGCCGTGCTCAAAACT 60.203 55.556 0.00 0.00 0.00 2.66
497 498 0.947180 GACCGCCGTGCTCAAAACTA 60.947 55.000 0.00 0.00 0.00 2.24
498 499 1.226030 ACCGCCGTGCTCAAAACTAC 61.226 55.000 0.00 0.00 0.00 2.73
499 500 0.949105 CCGCCGTGCTCAAAACTACT 60.949 55.000 0.00 0.00 0.00 2.57
500 501 1.670674 CCGCCGTGCTCAAAACTACTA 60.671 52.381 0.00 0.00 0.00 1.82
501 502 1.389106 CGCCGTGCTCAAAACTACTAC 59.611 52.381 0.00 0.00 0.00 2.73
502 503 2.409975 GCCGTGCTCAAAACTACTACA 58.590 47.619 0.00 0.00 0.00 2.74
503 504 3.000727 GCCGTGCTCAAAACTACTACAT 58.999 45.455 0.00 0.00 0.00 2.29
504 505 3.181520 GCCGTGCTCAAAACTACTACATG 60.182 47.826 0.00 0.00 0.00 3.21
505 506 3.370978 CCGTGCTCAAAACTACTACATGG 59.629 47.826 0.00 0.00 0.00 3.66
506 507 4.242475 CGTGCTCAAAACTACTACATGGA 58.758 43.478 0.00 0.00 0.00 3.41
507 508 4.091509 CGTGCTCAAAACTACTACATGGAC 59.908 45.833 0.00 0.00 0.00 4.02
508 509 5.238583 GTGCTCAAAACTACTACATGGACT 58.761 41.667 0.00 0.00 0.00 3.85
509 510 5.701290 GTGCTCAAAACTACTACATGGACTT 59.299 40.000 0.00 0.00 0.00 3.01
510 511 5.700832 TGCTCAAAACTACTACATGGACTTG 59.299 40.000 0.00 0.00 0.00 3.16
511 512 5.701290 GCTCAAAACTACTACATGGACTTGT 59.299 40.000 0.00 0.00 0.00 3.16
512 513 6.128526 GCTCAAAACTACTACATGGACTTGTC 60.129 42.308 0.00 0.00 0.00 3.18
513 514 6.228258 TCAAAACTACTACATGGACTTGTCC 58.772 40.000 12.54 12.54 0.00 4.02
514 515 6.042781 TCAAAACTACTACATGGACTTGTCCT 59.957 38.462 19.11 3.69 0.00 3.85
515 516 5.407407 AACTACTACATGGACTTGTCCTG 57.593 43.478 19.11 16.00 0.00 3.86
516 517 4.673968 ACTACTACATGGACTTGTCCTGA 58.326 43.478 19.11 2.15 0.00 3.86
517 518 4.707448 ACTACTACATGGACTTGTCCTGAG 59.293 45.833 19.11 12.90 0.00 3.35
518 519 3.779444 ACTACATGGACTTGTCCTGAGA 58.221 45.455 19.11 1.12 0.00 3.27
519 520 3.511934 ACTACATGGACTTGTCCTGAGAC 59.488 47.826 19.11 0.00 43.83 3.36
520 521 1.625818 ACATGGACTTGTCCTGAGACC 59.374 52.381 19.11 0.00 42.81 3.85
521 522 1.905215 CATGGACTTGTCCTGAGACCT 59.095 52.381 19.11 0.00 42.81 3.85
522 523 1.342074 TGGACTTGTCCTGAGACCTG 58.658 55.000 19.11 0.00 42.81 4.00
523 524 1.343069 GGACTTGTCCTGAGACCTGT 58.657 55.000 12.20 0.00 42.81 4.00
524 525 2.158370 TGGACTTGTCCTGAGACCTGTA 60.158 50.000 19.11 0.00 42.81 2.74
525 526 3.100671 GGACTTGTCCTGAGACCTGTAT 58.899 50.000 12.20 0.00 42.81 2.29
526 527 3.515901 GGACTTGTCCTGAGACCTGTATT 59.484 47.826 12.20 0.00 42.81 1.89
527 528 4.710375 GGACTTGTCCTGAGACCTGTATTA 59.290 45.833 12.20 0.00 42.81 0.98
528 529 5.163499 GGACTTGTCCTGAGACCTGTATTAG 60.163 48.000 12.20 0.00 42.81 1.73
529 530 5.580998 ACTTGTCCTGAGACCTGTATTAGA 58.419 41.667 0.00 0.00 42.81 2.10
530 531 6.017192 ACTTGTCCTGAGACCTGTATTAGAA 58.983 40.000 0.00 0.00 42.81 2.10
531 532 6.670027 ACTTGTCCTGAGACCTGTATTAGAAT 59.330 38.462 0.00 0.00 42.81 2.40
532 533 6.716934 TGTCCTGAGACCTGTATTAGAATC 57.283 41.667 0.00 0.00 42.81 2.52
533 534 6.194967 TGTCCTGAGACCTGTATTAGAATCA 58.805 40.000 0.00 0.00 42.81 2.57
534 535 6.667848 TGTCCTGAGACCTGTATTAGAATCAA 59.332 38.462 0.00 0.00 42.81 2.57
535 536 7.345653 TGTCCTGAGACCTGTATTAGAATCAAT 59.654 37.037 0.00 0.00 42.81 2.57
536 537 7.655328 GTCCTGAGACCTGTATTAGAATCAATG 59.345 40.741 0.00 0.00 37.00 2.82
537 538 7.345653 TCCTGAGACCTGTATTAGAATCAATGT 59.654 37.037 0.00 0.00 0.00 2.71
538 539 7.989741 CCTGAGACCTGTATTAGAATCAATGTT 59.010 37.037 0.00 0.00 0.00 2.71
553 554 8.462016 AGAATCAATGTTAGAAATTGGTAGTGC 58.538 33.333 0.00 0.00 36.01 4.40
554 555 7.701539 ATCAATGTTAGAAATTGGTAGTGCA 57.298 32.000 0.00 0.00 36.01 4.57
555 556 7.144722 TCAATGTTAGAAATTGGTAGTGCAG 57.855 36.000 0.00 0.00 36.01 4.41
556 557 5.567138 ATGTTAGAAATTGGTAGTGCAGC 57.433 39.130 0.00 0.00 0.00 5.25
557 558 3.756434 TGTTAGAAATTGGTAGTGCAGCC 59.244 43.478 0.00 0.00 0.00 4.85
558 559 2.584835 AGAAATTGGTAGTGCAGCCA 57.415 45.000 0.00 0.00 0.00 4.75
563 564 2.284754 TTGGTAGTGCAGCCAATCAA 57.715 45.000 11.84 0.00 39.57 2.57
564 565 1.825090 TGGTAGTGCAGCCAATCAAG 58.175 50.000 2.44 0.00 0.00 3.02
565 566 1.350684 TGGTAGTGCAGCCAATCAAGA 59.649 47.619 2.44 0.00 0.00 3.02
566 567 2.224744 TGGTAGTGCAGCCAATCAAGAA 60.225 45.455 2.44 0.00 0.00 2.52
567 568 3.019564 GGTAGTGCAGCCAATCAAGAAT 58.980 45.455 0.00 0.00 0.00 2.40
568 569 3.065925 GGTAGTGCAGCCAATCAAGAATC 59.934 47.826 0.00 0.00 0.00 2.52
569 570 2.097825 AGTGCAGCCAATCAAGAATCC 58.902 47.619 0.00 0.00 0.00 3.01
570 571 2.097825 GTGCAGCCAATCAAGAATCCT 58.902 47.619 0.00 0.00 0.00 3.24
571 572 2.494870 GTGCAGCCAATCAAGAATCCTT 59.505 45.455 0.00 0.00 0.00 3.36
572 573 3.696051 GTGCAGCCAATCAAGAATCCTTA 59.304 43.478 0.00 0.00 0.00 2.69
573 574 4.340381 GTGCAGCCAATCAAGAATCCTTAT 59.660 41.667 0.00 0.00 0.00 1.73
574 575 5.532406 GTGCAGCCAATCAAGAATCCTTATA 59.468 40.000 0.00 0.00 0.00 0.98
575 576 6.039717 GTGCAGCCAATCAAGAATCCTTATAA 59.960 38.462 0.00 0.00 0.00 0.98
576 577 6.606796 TGCAGCCAATCAAGAATCCTTATAAA 59.393 34.615 0.00 0.00 0.00 1.40
577 578 7.123997 TGCAGCCAATCAAGAATCCTTATAAAA 59.876 33.333 0.00 0.00 0.00 1.52
578 579 7.436376 GCAGCCAATCAAGAATCCTTATAAAAC 59.564 37.037 0.00 0.00 0.00 2.43
579 580 8.469200 CAGCCAATCAAGAATCCTTATAAAACA 58.531 33.333 0.00 0.00 0.00 2.83
580 581 9.034800 AGCCAATCAAGAATCCTTATAAAACAA 57.965 29.630 0.00 0.00 0.00 2.83
581 582 9.651913 GCCAATCAAGAATCCTTATAAAACAAA 57.348 29.630 0.00 0.00 0.00 2.83
585 586 9.855021 ATCAAGAATCCTTATAAAACAAAACCG 57.145 29.630 0.00 0.00 0.00 4.44
586 587 7.810759 TCAAGAATCCTTATAAAACAAAACCGC 59.189 33.333 0.00 0.00 0.00 5.68
587 588 7.222000 AGAATCCTTATAAAACAAAACCGCA 57.778 32.000 0.00 0.00 0.00 5.69
588 589 7.836842 AGAATCCTTATAAAACAAAACCGCAT 58.163 30.769 0.00 0.00 0.00 4.73
589 590 7.973944 AGAATCCTTATAAAACAAAACCGCATC 59.026 33.333 0.00 0.00 0.00 3.91
590 591 6.576662 TCCTTATAAAACAAAACCGCATCA 57.423 33.333 0.00 0.00 0.00 3.07
591 592 6.982852 TCCTTATAAAACAAAACCGCATCAA 58.017 32.000 0.00 0.00 0.00 2.57
592 593 7.434492 TCCTTATAAAACAAAACCGCATCAAA 58.566 30.769 0.00 0.00 0.00 2.69
593 594 8.091449 TCCTTATAAAACAAAACCGCATCAAAT 58.909 29.630 0.00 0.00 0.00 2.32
594 595 8.716909 CCTTATAAAACAAAACCGCATCAAATT 58.283 29.630 0.00 0.00 0.00 1.82
597 598 8.825667 ATAAAACAAAACCGCATCAAATTAGT 57.174 26.923 0.00 0.00 0.00 2.24
598 599 6.523676 AAACAAAACCGCATCAAATTAGTG 57.476 33.333 0.00 0.00 0.00 2.74
599 600 3.987220 ACAAAACCGCATCAAATTAGTGC 59.013 39.130 0.86 0.86 35.59 4.40
600 601 4.236935 CAAAACCGCATCAAATTAGTGCT 58.763 39.130 7.68 0.00 36.74 4.40
601 602 4.519540 AAACCGCATCAAATTAGTGCTT 57.480 36.364 7.68 0.00 36.74 3.91
602 603 4.519540 AACCGCATCAAATTAGTGCTTT 57.480 36.364 7.68 0.36 36.74 3.51
603 604 5.637006 AACCGCATCAAATTAGTGCTTTA 57.363 34.783 7.68 0.00 36.74 1.85
604 605 5.235305 ACCGCATCAAATTAGTGCTTTAG 57.765 39.130 7.68 0.00 36.74 1.85
605 606 4.941263 ACCGCATCAAATTAGTGCTTTAGA 59.059 37.500 7.68 0.00 36.74 2.10
606 607 5.414454 ACCGCATCAAATTAGTGCTTTAGAA 59.586 36.000 7.68 0.00 36.74 2.10
607 608 5.967674 CCGCATCAAATTAGTGCTTTAGAAG 59.032 40.000 7.68 0.00 36.74 2.85
608 609 6.183360 CCGCATCAAATTAGTGCTTTAGAAGA 60.183 38.462 7.68 0.00 36.74 2.87
609 610 7.412853 CGCATCAAATTAGTGCTTTAGAAGAT 58.587 34.615 7.68 0.00 36.74 2.40
610 611 8.551205 CGCATCAAATTAGTGCTTTAGAAGATA 58.449 33.333 7.68 0.00 36.74 1.98
643 644 6.764877 ATAAACATATCTAAACGCTGTCGG 57.235 37.500 0.00 0.00 40.69 4.79
644 645 3.795623 ACATATCTAAACGCTGTCGGT 57.204 42.857 0.00 0.00 40.69 4.69
645 646 4.906065 ACATATCTAAACGCTGTCGGTA 57.094 40.909 0.00 0.00 40.69 4.02
646 647 4.604976 ACATATCTAAACGCTGTCGGTAC 58.395 43.478 0.00 0.00 40.69 3.34
659 660 3.347168 GGTACGGTTTGCCACACC 58.653 61.111 0.00 0.00 33.00 4.16
660 661 1.526455 GGTACGGTTTGCCACACCA 60.526 57.895 0.27 0.00 37.88 4.17
661 662 1.512156 GGTACGGTTTGCCACACCAG 61.512 60.000 0.27 0.00 37.88 4.00
662 663 1.228003 TACGGTTTGCCACACCAGG 60.228 57.895 0.27 0.00 33.36 4.45
663 664 1.697082 TACGGTTTGCCACACCAGGA 61.697 55.000 0.27 0.00 33.36 3.86
664 665 1.603455 CGGTTTGCCACACCAGGAT 60.603 57.895 0.27 0.00 33.36 3.24
665 666 1.178534 CGGTTTGCCACACCAGGATT 61.179 55.000 0.27 0.00 33.36 3.01
666 667 1.884497 CGGTTTGCCACACCAGGATTA 60.884 52.381 0.27 0.00 33.36 1.75
667 668 1.818674 GGTTTGCCACACCAGGATTAG 59.181 52.381 0.00 0.00 34.04 1.73
668 669 2.554344 GGTTTGCCACACCAGGATTAGA 60.554 50.000 0.00 0.00 34.04 2.10
669 670 3.153919 GTTTGCCACACCAGGATTAGAA 58.846 45.455 0.00 0.00 0.00 2.10
670 671 2.489938 TGCCACACCAGGATTAGAAC 57.510 50.000 0.00 0.00 0.00 3.01
671 672 1.985159 TGCCACACCAGGATTAGAACT 59.015 47.619 0.00 0.00 0.00 3.01
672 673 2.027192 TGCCACACCAGGATTAGAACTC 60.027 50.000 0.00 0.00 0.00 3.01
673 674 2.027192 GCCACACCAGGATTAGAACTCA 60.027 50.000 0.00 0.00 0.00 3.41
674 675 3.600388 CCACACCAGGATTAGAACTCAC 58.400 50.000 0.00 0.00 0.00 3.51
675 676 3.007940 CCACACCAGGATTAGAACTCACA 59.992 47.826 0.00 0.00 0.00 3.58
676 677 4.504864 CCACACCAGGATTAGAACTCACAA 60.505 45.833 0.00 0.00 0.00 3.33
677 678 4.452455 CACACCAGGATTAGAACTCACAAC 59.548 45.833 0.00 0.00 0.00 3.32
678 679 4.348168 ACACCAGGATTAGAACTCACAACT 59.652 41.667 0.00 0.00 0.00 3.16
679 680 4.692625 CACCAGGATTAGAACTCACAACTG 59.307 45.833 0.00 0.00 0.00 3.16
680 681 4.593206 ACCAGGATTAGAACTCACAACTGA 59.407 41.667 0.00 0.00 0.00 3.41
681 682 4.932200 CCAGGATTAGAACTCACAACTGAC 59.068 45.833 0.00 0.00 0.00 3.51
682 683 4.932200 CAGGATTAGAACTCACAACTGACC 59.068 45.833 0.00 0.00 0.00 4.02
683 684 4.020128 AGGATTAGAACTCACAACTGACCC 60.020 45.833 0.00 0.00 0.00 4.46
684 685 4.262894 GGATTAGAACTCACAACTGACCCA 60.263 45.833 0.00 0.00 0.00 4.51
685 686 2.918712 AGAACTCACAACTGACCCAG 57.081 50.000 0.00 0.00 37.52 4.45
686 687 1.417890 AGAACTCACAACTGACCCAGG 59.582 52.381 0.00 0.00 35.51 4.45
687 688 1.141053 GAACTCACAACTGACCCAGGT 59.859 52.381 0.00 0.00 35.51 4.00
688 689 0.759346 ACTCACAACTGACCCAGGTC 59.241 55.000 10.02 10.02 44.77 3.85
699 700 2.519013 GACCCAGGTCAAAGAATTGCT 58.481 47.619 12.05 0.00 44.02 3.91
700 701 3.686016 GACCCAGGTCAAAGAATTGCTA 58.314 45.455 12.05 0.00 44.02 3.49
701 702 3.421844 ACCCAGGTCAAAGAATTGCTAC 58.578 45.455 0.00 0.00 36.45 3.58
702 703 3.074538 ACCCAGGTCAAAGAATTGCTACT 59.925 43.478 0.00 0.00 36.45 2.57
703 704 4.288626 ACCCAGGTCAAAGAATTGCTACTA 59.711 41.667 0.00 0.00 36.45 1.82
735 736 3.129287 CCATCTTCTTTGCGTGGCTAAAT 59.871 43.478 0.00 0.00 0.00 1.40
743 744 6.862209 TCTTTGCGTGGCTAAATAAAATGAT 58.138 32.000 0.00 0.00 0.00 2.45
765 766 1.302511 GGGTGCACAAGGACGTGAT 60.303 57.895 20.43 0.00 39.34 3.06
777 778 1.202428 GGACGTGATCTTGGACTAGCC 60.202 57.143 0.00 0.00 37.10 3.93
835 843 0.680618 TCCGGTTGGTTGTGTATCGT 59.319 50.000 0.00 0.00 36.30 3.73
836 844 0.793861 CCGGTTGGTTGTGTATCGTG 59.206 55.000 0.00 0.00 0.00 4.35
838 846 1.605968 CGGTTGGTTGTGTATCGTGGA 60.606 52.381 0.00 0.00 0.00 4.02
840 848 2.482721 GGTTGGTTGTGTATCGTGGAAG 59.517 50.000 0.00 0.00 0.00 3.46
841 849 2.465860 TGGTTGTGTATCGTGGAAGG 57.534 50.000 0.00 0.00 0.00 3.46
842 850 1.695242 TGGTTGTGTATCGTGGAAGGT 59.305 47.619 0.00 0.00 0.00 3.50
843 851 2.898612 TGGTTGTGTATCGTGGAAGGTA 59.101 45.455 0.00 0.00 0.00 3.08
844 852 3.256558 GGTTGTGTATCGTGGAAGGTAC 58.743 50.000 0.00 0.00 0.00 3.34
845 853 2.919229 GTTGTGTATCGTGGAAGGTACG 59.081 50.000 0.00 0.00 42.56 3.67
846 854 2.161855 TGTGTATCGTGGAAGGTACGT 58.838 47.619 0.00 0.00 41.91 3.57
847 855 3.342719 TGTGTATCGTGGAAGGTACGTA 58.657 45.455 0.00 0.00 41.91 3.57
848 856 3.126858 TGTGTATCGTGGAAGGTACGTAC 59.873 47.826 17.56 17.56 41.91 3.67
849 857 3.375299 GTGTATCGTGGAAGGTACGTACT 59.625 47.826 24.07 6.42 41.91 2.73
850 858 3.623060 TGTATCGTGGAAGGTACGTACTC 59.377 47.826 24.07 14.90 41.91 2.59
851 859 1.453155 TCGTGGAAGGTACGTACTCC 58.547 55.000 24.07 22.57 41.91 3.85
852 860 1.003580 TCGTGGAAGGTACGTACTCCT 59.996 52.381 25.77 15.07 41.91 3.69
853 861 2.236146 TCGTGGAAGGTACGTACTCCTA 59.764 50.000 25.77 14.67 41.91 2.94
854 862 3.009723 CGTGGAAGGTACGTACTCCTAA 58.990 50.000 25.77 11.08 36.83 2.69
855 863 3.629398 CGTGGAAGGTACGTACTCCTAAT 59.371 47.826 25.77 6.00 36.83 1.73
856 864 4.096984 CGTGGAAGGTACGTACTCCTAATT 59.903 45.833 25.77 13.09 36.83 1.40
857 865 5.296780 CGTGGAAGGTACGTACTCCTAATTA 59.703 44.000 25.77 9.95 36.83 1.40
858 866 6.512415 CGTGGAAGGTACGTACTCCTAATTAG 60.512 46.154 25.77 5.43 36.83 1.73
859 867 5.300286 TGGAAGGTACGTACTCCTAATTAGC 59.700 44.000 25.77 8.74 33.27 3.09
860 868 5.300286 GGAAGGTACGTACTCCTAATTAGCA 59.700 44.000 24.07 0.00 33.27 3.49
861 869 6.388435 AAGGTACGTACTCCTAATTAGCAG 57.612 41.667 24.07 4.29 33.27 4.24
862 870 4.826183 AGGTACGTACTCCTAATTAGCAGG 59.174 45.833 24.07 0.00 31.66 4.85
863 871 4.022503 GGTACGTACTCCTAATTAGCAGGG 60.023 50.000 24.07 0.00 33.66 4.45
864 872 2.364647 ACGTACTCCTAATTAGCAGGGC 59.635 50.000 8.30 0.00 33.66 5.19
865 873 2.364324 CGTACTCCTAATTAGCAGGGCA 59.636 50.000 8.30 0.00 33.66 5.36
866 874 3.181469 CGTACTCCTAATTAGCAGGGCAA 60.181 47.826 8.30 0.00 33.66 4.52
867 875 3.567478 ACTCCTAATTAGCAGGGCAAG 57.433 47.619 8.30 0.00 33.66 4.01
868 876 3.115390 ACTCCTAATTAGCAGGGCAAGA 58.885 45.455 8.30 0.00 33.66 3.02
869 877 3.523564 ACTCCTAATTAGCAGGGCAAGAA 59.476 43.478 8.30 0.00 33.66 2.52
870 878 4.133078 CTCCTAATTAGCAGGGCAAGAAG 58.867 47.826 6.99 0.00 33.66 2.85
874 882 0.620556 TTAGCAGGGCAAGAAGAGGG 59.379 55.000 0.00 0.00 0.00 4.30
894 937 4.221041 AGGGACTCGGACTTCTTTTTAGAG 59.779 45.833 0.00 0.00 0.00 2.43
932 1005 3.469008 TGCTACATATACACAGGCACC 57.531 47.619 0.00 0.00 0.00 5.01
934 1007 4.219919 TGCTACATATACACAGGCACCTA 58.780 43.478 0.00 0.00 0.00 3.08
947 1020 4.202121 ACAGGCACCTAGACATACATAACG 60.202 45.833 0.00 0.00 0.00 3.18
952 1043 5.221106 GCACCTAGACATACATAACGTACCA 60.221 44.000 0.00 0.00 31.27 3.25
1100 1195 2.743928 GGTGCCTCTGCTTCACCG 60.744 66.667 0.00 0.00 40.54 4.94
1130 1226 1.361668 CGCACATTCTCCTTCGGTGG 61.362 60.000 0.00 0.00 0.00 4.61
1142 1238 0.327924 TTCGGTGGCATCTTGTGGAT 59.672 50.000 0.00 0.00 34.51 3.41
1143 1239 1.199615 TCGGTGGCATCTTGTGGATA 58.800 50.000 0.00 0.00 32.64 2.59
1160 1256 3.262151 TGGATAATCACAGTGGAACCGAA 59.738 43.478 0.00 0.00 37.80 4.30
1167 1263 2.034558 CACAGTGGAACCGAAGCAATTT 59.965 45.455 0.00 0.00 37.80 1.82
1176 1272 2.081462 CCGAAGCAATTTAACGAGGGT 58.919 47.619 0.00 0.00 0.00 4.34
1189 1285 1.448119 CGAGGGTCTAGCAGATCGCA 61.448 60.000 11.20 0.00 46.13 5.10
1199 1295 0.866427 GCAGATCGCATCCATGTCTG 59.134 55.000 3.51 3.51 41.79 3.51
1218 1314 3.450115 GTCGACCTCCACTCCCGG 61.450 72.222 3.51 0.00 0.00 5.73
1275 1371 2.482664 CGACATCTCCATGGAAGTCCTG 60.483 54.545 24.68 16.44 36.82 3.86
1280 1376 0.544357 TCCATGGAAGTCCTGGACGT 60.544 55.000 20.49 17.97 37.95 4.34
1383 1479 2.107953 GAGCTGGAGGCATCGTCC 59.892 66.667 0.00 0.00 44.79 4.79
1478 1577 3.637926 AACCTAACGAGCCCGCGTC 62.638 63.158 4.92 0.00 44.86 5.19
1516 1615 1.829533 ATGGCCGGATCCAACATGC 60.830 57.895 13.41 5.65 39.96 4.06
1581 1680 4.891566 GAGTGCACCTACTCCACG 57.108 61.111 14.63 0.00 40.92 4.94
1590 1689 1.805945 CTACTCCACGCACTTCGCC 60.806 63.158 0.00 0.00 43.23 5.54
1716 1830 0.037590 TCGAGGGGGTGGTCAATTTG 59.962 55.000 0.00 0.00 0.00 2.32
1756 1876 0.667993 CACGTTCAACCATGCCAACT 59.332 50.000 0.00 0.00 0.00 3.16
1758 1878 1.238439 CGTTCAACCATGCCAACTCT 58.762 50.000 0.00 0.00 0.00 3.24
1760 1880 2.416547 CGTTCAACCATGCCAACTCTAG 59.583 50.000 0.00 0.00 0.00 2.43
1767 1899 5.700402 ACCATGCCAACTCTAGATACTTT 57.300 39.130 0.00 0.00 0.00 2.66
1806 1938 3.329542 AAGCACGTCGGCCATGGAT 62.330 57.895 18.40 0.00 0.00 3.41
1834 1966 3.545124 ATTGTTCGGTGCCGCCTCA 62.545 57.895 5.64 2.41 39.59 3.86
1868 2000 1.497161 GAGAGGCTAAGCTTACCCCA 58.503 55.000 13.29 0.00 0.00 4.96
1875 2007 1.212935 CTAAGCTTACCCCATGCCACT 59.787 52.381 0.86 0.00 0.00 4.00
1879 2011 1.956477 GCTTACCCCATGCCACTATTG 59.044 52.381 0.00 0.00 0.00 1.90
1884 2016 1.037030 CCCATGCCACTATTGCGGTT 61.037 55.000 0.00 0.00 0.00 4.44
1896 2028 2.559698 TTGCGGTTGAGAAGATTCCA 57.440 45.000 0.00 0.00 0.00 3.53
1899 2031 1.671850 GCGGTTGAGAAGATTCCACGA 60.672 52.381 0.00 0.00 0.00 4.35
1900 2032 2.683968 CGGTTGAGAAGATTCCACGAA 58.316 47.619 0.00 0.00 0.00 3.85
1901 2033 3.064207 CGGTTGAGAAGATTCCACGAAA 58.936 45.455 0.00 0.00 0.00 3.46
1902 2034 3.496884 CGGTTGAGAAGATTCCACGAAAA 59.503 43.478 0.00 0.00 0.00 2.29
1903 2035 4.024387 CGGTTGAGAAGATTCCACGAAAAA 60.024 41.667 0.00 0.00 0.00 1.94
1904 2036 5.334879 CGGTTGAGAAGATTCCACGAAAAAT 60.335 40.000 0.00 0.00 0.00 1.82
1905 2037 6.128391 CGGTTGAGAAGATTCCACGAAAAATA 60.128 38.462 0.00 0.00 0.00 1.40
1906 2038 7.572353 CGGTTGAGAAGATTCCACGAAAAATAA 60.572 37.037 0.00 0.00 0.00 1.40
1907 2039 8.244113 GGTTGAGAAGATTCCACGAAAAATAAT 58.756 33.333 0.00 0.00 0.00 1.28
1908 2040 9.065871 GTTGAGAAGATTCCACGAAAAATAATG 57.934 33.333 0.00 0.00 0.00 1.90
1909 2041 7.761409 TGAGAAGATTCCACGAAAAATAATGG 58.239 34.615 0.00 0.00 0.00 3.16
1910 2042 7.393234 TGAGAAGATTCCACGAAAAATAATGGT 59.607 33.333 0.00 0.00 33.67 3.55
1911 2043 7.538575 AGAAGATTCCACGAAAAATAATGGTG 58.461 34.615 0.00 0.00 33.67 4.17
1918 2050 5.095490 CACGAAAAATAATGGTGGAGAAGC 58.905 41.667 0.00 0.00 0.00 3.86
1919 2051 4.157840 ACGAAAAATAATGGTGGAGAAGCC 59.842 41.667 0.00 0.00 37.10 4.35
1920 2052 4.672409 GAAAAATAATGGTGGAGAAGCCG 58.328 43.478 0.00 0.00 40.66 5.52
1921 2053 3.644966 AAATAATGGTGGAGAAGCCGA 57.355 42.857 0.00 0.00 40.66 5.54
1922 2054 2.918712 ATAATGGTGGAGAAGCCGAG 57.081 50.000 0.00 0.00 40.66 4.63
1923 2055 0.178068 TAATGGTGGAGAAGCCGAGC 59.822 55.000 0.00 0.00 40.66 5.03
1924 2056 1.557269 AATGGTGGAGAAGCCGAGCT 61.557 55.000 0.00 0.00 42.56 4.09
1936 2068 4.680237 CGAGCTTGCCCGTGGACA 62.680 66.667 0.00 0.00 0.00 4.02
1937 2069 2.281484 GAGCTTGCCCGTGGACAA 60.281 61.111 0.00 0.00 0.00 3.18
1938 2070 2.281761 AGCTTGCCCGTGGACAAG 60.282 61.111 10.25 10.25 44.88 3.16
1939 2071 2.281484 GCTTGCCCGTGGACAAGA 60.281 61.111 17.75 0.00 44.89 3.02
1940 2072 1.675641 GCTTGCCCGTGGACAAGAT 60.676 57.895 17.75 0.00 44.89 2.40
1941 2073 1.244019 GCTTGCCCGTGGACAAGATT 61.244 55.000 17.75 0.00 44.89 2.40
1942 2074 0.804989 CTTGCCCGTGGACAAGATTC 59.195 55.000 9.09 0.00 44.89 2.52
1943 2075 0.608035 TTGCCCGTGGACAAGATTCC 60.608 55.000 0.00 0.00 36.03 3.01
1944 2076 1.299976 GCCCGTGGACAAGATTCCT 59.700 57.895 0.00 0.00 36.51 3.36
1945 2077 0.744771 GCCCGTGGACAAGATTCCTC 60.745 60.000 0.00 0.00 36.51 3.71
2020 2155 2.819595 CCCCGCACACCGAATCAG 60.820 66.667 0.00 0.00 40.02 2.90
2022 2157 1.216977 CCCGCACACCGAATCAGTA 59.783 57.895 0.00 0.00 40.02 2.74
2024 2159 0.389296 CCGCACACCGAATCAGTACA 60.389 55.000 0.00 0.00 40.02 2.90
2035 2170 5.657302 ACCGAATCAGTACAAACTCCTCTAT 59.343 40.000 0.00 0.00 31.97 1.98
2052 2187 3.653344 TCTATTGAGCGCCATGTATGAC 58.347 45.455 2.29 0.00 0.00 3.06
2073 2208 3.055963 ACTGAGACAAGAGATCTGCTTGG 60.056 47.826 25.48 16.03 45.31 3.61
2115 2250 6.992063 AACTAGTTCATCAATAGGTGCAAG 57.008 37.500 1.12 0.00 0.00 4.01
2120 2255 5.887598 AGTTCATCAATAGGTGCAAGCAATA 59.112 36.000 0.00 0.00 36.26 1.90
2133 2911 7.701501 AGGTGCAAGCAATAATTTTTGTTTTTG 59.298 29.630 7.75 10.94 36.26 2.44
2151 2929 9.670719 TTGTTTTTGTTTCAAATTTGAAGGAAC 57.329 25.926 27.52 23.54 46.68 3.62
2153 2931 9.328721 GTTTTTGTTTCAAATTTGAAGGAACTG 57.671 29.630 27.52 0.00 46.68 3.16
2154 2932 6.660887 TTGTTTCAAATTTGAAGGAACTGC 57.339 33.333 27.52 15.60 46.68 4.40
2155 2933 5.115480 TGTTTCAAATTTGAAGGAACTGCC 58.885 37.500 27.52 13.12 46.68 4.85
2156 2934 5.115480 GTTTCAAATTTGAAGGAACTGCCA 58.885 37.500 27.52 11.68 46.68 4.92
2157 2935 5.549742 TTCAAATTTGAAGGAACTGCCAT 57.450 34.783 26.01 0.00 41.88 4.40
2158 2936 5.549742 TCAAATTTGAAGGAACTGCCATT 57.450 34.783 18.45 0.00 40.86 3.16
2159 2937 5.299148 TCAAATTTGAAGGAACTGCCATTG 58.701 37.500 18.45 0.00 40.86 2.82
2160 2938 4.961438 AATTTGAAGGAACTGCCATTGT 57.039 36.364 0.00 0.00 40.86 2.71
2161 2939 3.731652 TTTGAAGGAACTGCCATTGTG 57.268 42.857 0.00 0.00 40.86 3.33
2163 2941 2.665165 TGAAGGAACTGCCATTGTGTT 58.335 42.857 0.00 0.00 40.86 3.32
2164 2942 2.622942 TGAAGGAACTGCCATTGTGTTC 59.377 45.455 0.00 0.00 40.86 3.18
2165 2943 2.363306 AGGAACTGCCATTGTGTTCA 57.637 45.000 12.90 0.00 41.07 3.18
2166 2944 2.880443 AGGAACTGCCATTGTGTTCAT 58.120 42.857 12.90 6.38 41.07 2.57
2168 2946 3.758554 AGGAACTGCCATTGTGTTCATAC 59.241 43.478 12.90 0.00 41.07 2.39
2170 2948 4.941263 GGAACTGCCATTGTGTTCATACTA 59.059 41.667 12.90 0.00 41.07 1.82
2171 2949 5.065218 GGAACTGCCATTGTGTTCATACTAG 59.935 44.000 12.90 0.00 41.07 2.57
2172 2950 4.517285 ACTGCCATTGTGTTCATACTAGG 58.483 43.478 0.00 0.00 0.00 3.02
2176 2954 5.772672 TGCCATTGTGTTCATACTAGGTTTT 59.227 36.000 0.00 0.00 0.00 2.43
2177 2955 6.072175 TGCCATTGTGTTCATACTAGGTTTTC 60.072 38.462 0.00 0.00 0.00 2.29
2179 2957 7.305474 CCATTGTGTTCATACTAGGTTTTCAC 58.695 38.462 0.00 0.00 0.00 3.18
2180 2958 7.040755 CCATTGTGTTCATACTAGGTTTTCACA 60.041 37.037 0.00 0.11 0.00 3.58
2182 2960 8.458573 TTGTGTTCATACTAGGTTTTCACATT 57.541 30.769 0.00 0.00 34.21 2.71
2217 2995 3.986072 ATGCCCGTGCGTTGCCATA 62.986 57.895 0.00 0.00 41.78 2.74
2310 3729 2.396590 ATGTGGACACAATCGGGTAC 57.603 50.000 9.42 0.00 45.41 3.34
2375 6368 3.969250 ATGCCCGTGGGTTGCTACG 62.969 63.158 6.82 0.00 39.83 3.51
2518 7945 3.519908 CGTACATTGCCACGGATAATG 57.480 47.619 10.28 10.28 37.71 1.90
2762 8218 3.523564 TGCTCCAACTAATTTCTAGGGCT 59.476 43.478 0.00 0.00 0.00 5.19
2875 8472 1.763770 CCCCTCCTTGTCAAGCACT 59.236 57.895 7.09 0.00 0.00 4.40
2876 8473 0.607489 CCCCTCCTTGTCAAGCACTG 60.607 60.000 7.09 0.00 0.00 3.66
2962 8560 2.618045 CGAATGGGGAAGGCAAGTACTT 60.618 50.000 1.12 1.12 0.00 2.24
2974 8572 5.978814 AGGCAAGTACTTAGTTGATGTAGG 58.021 41.667 8.04 0.00 38.57 3.18
2987 8585 0.390735 ATGTAGGGAAACACCGTCGC 60.391 55.000 0.00 0.00 40.11 5.19
3015 8613 3.198068 CAGGTTAGAATGGTCACCATCG 58.802 50.000 10.64 0.00 44.40 3.84
3019 8617 2.859165 AGAATGGTCACCATCGTTGT 57.141 45.000 10.64 0.00 44.40 3.32
3026 8624 2.676342 GGTCACCATCGTTGTTATCACC 59.324 50.000 0.00 0.00 0.00 4.02
3049 8647 4.264253 CATGCCTTCTTCACCATGTCTAA 58.736 43.478 0.00 0.00 32.51 2.10
3054 8652 4.701651 CCTTCTTCACCATGTCTAATTGCA 59.298 41.667 0.00 0.00 0.00 4.08
3055 8653 5.163683 CCTTCTTCACCATGTCTAATTGCAG 60.164 44.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.323302 TTGCTCGGTATTGTGGCAGA 59.677 50.000 0.00 0.00 34.37 4.26
4 5 0.323302 TCTTGCTCGGTATTGTGGCA 59.677 50.000 0.00 0.00 0.00 4.92
5 6 1.009829 CTCTTGCTCGGTATTGTGGC 58.990 55.000 0.00 0.00 0.00 5.01
6 7 1.009829 GCTCTTGCTCGGTATTGTGG 58.990 55.000 0.00 0.00 36.03 4.17
7 8 1.009829 GGCTCTTGCTCGGTATTGTG 58.990 55.000 0.00 0.00 39.59 3.33
8 9 0.107654 GGGCTCTTGCTCGGTATTGT 60.108 55.000 0.00 0.00 39.59 2.71
9 10 2.695314 GGGCTCTTGCTCGGTATTG 58.305 57.895 0.00 0.00 39.59 1.90
30 31 3.615509 TAAAGAGGGTTGCCGCCGG 62.616 63.158 0.00 0.00 0.00 6.13
31 32 2.046700 TAAAGAGGGTTGCCGCCG 60.047 61.111 0.00 0.00 0.00 6.46
32 33 0.107165 ATCTAAAGAGGGTTGCCGCC 60.107 55.000 0.00 0.00 0.00 6.13
33 34 1.300481 GATCTAAAGAGGGTTGCCGC 58.700 55.000 0.00 0.00 0.00 6.53
34 35 1.209504 TGGATCTAAAGAGGGTTGCCG 59.790 52.381 0.00 0.00 0.00 5.69
35 36 3.017442 GTTGGATCTAAAGAGGGTTGCC 58.983 50.000 0.00 0.00 0.00 4.52
36 37 3.686016 TGTTGGATCTAAAGAGGGTTGC 58.314 45.455 0.00 0.00 0.00 4.17
37 38 4.265073 CCTGTTGGATCTAAAGAGGGTTG 58.735 47.826 13.66 0.00 35.06 3.77
38 39 4.576330 CCTGTTGGATCTAAAGAGGGTT 57.424 45.455 13.66 0.00 35.06 4.11
41 42 2.422093 GCCCCTGTTGGATCTAAAGAGG 60.422 54.545 14.22 14.22 37.72 3.69
42 43 2.507471 AGCCCCTGTTGGATCTAAAGAG 59.493 50.000 0.00 0.00 35.39 2.85
43 44 2.505819 GAGCCCCTGTTGGATCTAAAGA 59.494 50.000 0.00 0.00 37.82 2.52
44 45 2.743183 CGAGCCCCTGTTGGATCTAAAG 60.743 54.545 0.00 0.00 38.69 1.85
45 46 1.209504 CGAGCCCCTGTTGGATCTAAA 59.790 52.381 0.00 0.00 38.69 1.85
46 47 0.830648 CGAGCCCCTGTTGGATCTAA 59.169 55.000 0.00 0.00 38.69 2.10
47 48 1.686325 GCGAGCCCCTGTTGGATCTA 61.686 60.000 0.00 0.00 38.69 1.98
48 49 3.036429 GCGAGCCCCTGTTGGATCT 62.036 63.158 0.00 0.00 38.69 2.75
49 50 2.514824 GCGAGCCCCTGTTGGATC 60.515 66.667 0.00 0.00 37.46 3.36
50 51 4.115199 GGCGAGCCCCTGTTGGAT 62.115 66.667 1.97 0.00 35.39 3.41
116 117 3.818787 CGATGCAGGGTTGGCTGC 61.819 66.667 0.00 0.00 45.89 5.25
117 118 3.818787 GCGATGCAGGGTTGGCTG 61.819 66.667 0.00 0.00 0.00 4.85
140 141 1.435515 CTCCTCTACTGAGCGGCAC 59.564 63.158 1.45 0.00 38.93 5.01
141 142 2.418910 GCTCCTCTACTGAGCGGCA 61.419 63.158 1.45 0.00 45.05 5.69
142 143 2.415426 GCTCCTCTACTGAGCGGC 59.585 66.667 0.00 0.00 45.05 6.53
146 147 1.341482 TGGTGGAGCTCCTCTACTGAG 60.341 57.143 32.28 0.00 40.91 3.35
147 148 0.704664 TGGTGGAGCTCCTCTACTGA 59.295 55.000 32.28 8.55 40.91 3.41
148 149 1.686052 GATGGTGGAGCTCCTCTACTG 59.314 57.143 32.28 0.00 40.91 2.74
149 150 1.752436 CGATGGTGGAGCTCCTCTACT 60.752 57.143 32.28 17.01 40.91 2.57
150 151 0.671251 CGATGGTGGAGCTCCTCTAC 59.329 60.000 32.28 21.95 40.49 2.59
151 152 1.109920 GCGATGGTGGAGCTCCTCTA 61.110 60.000 32.28 26.64 36.82 2.43
152 153 2.430610 GCGATGGTGGAGCTCCTCT 61.431 63.158 32.28 14.86 36.82 3.69
153 154 2.107953 GCGATGGTGGAGCTCCTC 59.892 66.667 32.28 27.97 36.82 3.71
154 155 3.842923 CGCGATGGTGGAGCTCCT 61.843 66.667 32.28 13.46 36.82 3.69
158 159 3.733344 TTAGGCGCGATGGTGGAGC 62.733 63.158 12.10 0.00 0.00 4.70
159 160 1.883084 GTTAGGCGCGATGGTGGAG 60.883 63.158 12.10 0.00 0.00 3.86
160 161 2.185867 GTTAGGCGCGATGGTGGA 59.814 61.111 12.10 0.00 0.00 4.02
161 162 2.895372 GGTTAGGCGCGATGGTGG 60.895 66.667 12.10 0.00 0.00 4.61
162 163 2.895372 GGGTTAGGCGCGATGGTG 60.895 66.667 12.10 0.00 0.00 4.17
163 164 2.961893 TTGGGTTAGGCGCGATGGT 61.962 57.895 12.10 0.00 0.00 3.55
164 165 2.124901 TTGGGTTAGGCGCGATGG 60.125 61.111 12.10 0.00 0.00 3.51
165 166 1.705337 CTGTTGGGTTAGGCGCGATG 61.705 60.000 12.10 0.00 0.00 3.84
166 167 1.449601 CTGTTGGGTTAGGCGCGAT 60.450 57.895 12.10 0.00 0.00 4.58
167 168 1.895020 ATCTGTTGGGTTAGGCGCGA 61.895 55.000 12.10 0.00 0.00 5.87
168 169 1.429148 GATCTGTTGGGTTAGGCGCG 61.429 60.000 0.00 0.00 0.00 6.86
169 170 1.095807 GGATCTGTTGGGTTAGGCGC 61.096 60.000 0.00 0.00 0.00 6.53
170 171 0.810031 CGGATCTGTTGGGTTAGGCG 60.810 60.000 0.00 0.00 0.00 5.52
171 172 1.095807 GCGGATCTGTTGGGTTAGGC 61.096 60.000 2.89 0.00 0.00 3.93
172 173 0.810031 CGCGGATCTGTTGGGTTAGG 60.810 60.000 0.00 0.00 0.00 2.69
173 174 1.429148 GCGCGGATCTGTTGGGTTAG 61.429 60.000 8.83 0.00 0.00 2.34
174 175 1.448893 GCGCGGATCTGTTGGGTTA 60.449 57.895 8.83 0.00 0.00 2.85
175 176 2.746277 GCGCGGATCTGTTGGGTT 60.746 61.111 8.83 0.00 0.00 4.11
176 177 4.778143 GGCGCGGATCTGTTGGGT 62.778 66.667 8.83 0.00 0.00 4.51
218 219 4.694233 AGGCAGTGCACAGAGGCG 62.694 66.667 21.04 0.85 36.28 5.52
219 220 2.745492 GAGGCAGTGCACAGAGGC 60.745 66.667 21.04 19.48 0.00 4.70
220 221 2.433838 CGAGGCAGTGCACAGAGG 60.434 66.667 21.04 6.54 0.00 3.69
221 222 1.735920 GACGAGGCAGTGCACAGAG 60.736 63.158 21.04 9.61 0.00 3.35
222 223 2.340078 GACGAGGCAGTGCACAGA 59.660 61.111 21.04 0.00 0.00 3.41
223 224 3.108289 CGACGAGGCAGTGCACAG 61.108 66.667 21.04 12.97 0.00 3.66
224 225 4.662961 CCGACGAGGCAGTGCACA 62.663 66.667 21.04 0.00 0.00 4.57
254 255 2.807045 GACTGCTCGTGCTCGTGG 60.807 66.667 11.19 4.08 40.48 4.94
255 256 3.168604 CGACTGCTCGTGCTCGTG 61.169 66.667 11.19 6.97 40.48 4.35
300 301 4.569023 TACGAGATGGCTGGCGCG 62.569 66.667 0.00 0.00 36.88 6.86
301 302 2.962253 GTACGAGATGGCTGGCGC 60.962 66.667 0.00 0.00 0.00 6.53
302 303 1.068083 ATGTACGAGATGGCTGGCG 59.932 57.895 0.00 0.00 0.00 5.69
303 304 0.104855 TCATGTACGAGATGGCTGGC 59.895 55.000 0.00 0.00 0.00 4.85
304 305 1.269988 CCTCATGTACGAGATGGCTGG 60.270 57.143 0.00 0.00 34.79 4.85
305 306 1.683385 TCCTCATGTACGAGATGGCTG 59.317 52.381 0.00 0.00 34.79 4.85
306 307 1.959985 CTCCTCATGTACGAGATGGCT 59.040 52.381 0.00 0.00 34.79 4.75
307 308 1.957177 TCTCCTCATGTACGAGATGGC 59.043 52.381 0.00 0.00 34.79 4.40
308 309 4.655762 TTTCTCCTCATGTACGAGATGG 57.344 45.455 9.05 0.00 34.79 3.51
328 329 1.966762 CGGCAGCTGGACCATTTTT 59.033 52.632 17.12 0.00 0.00 1.94
329 330 2.639327 GCGGCAGCTGGACCATTTT 61.639 57.895 17.12 0.00 41.01 1.82
330 331 3.064324 GCGGCAGCTGGACCATTT 61.064 61.111 17.12 0.00 41.01 2.32
388 389 2.687566 TTCCTTCCTCCCCTCGCC 60.688 66.667 0.00 0.00 0.00 5.54
389 390 1.990614 ACTTCCTTCCTCCCCTCGC 60.991 63.158 0.00 0.00 0.00 5.03
390 391 1.617947 CCACTTCCTTCCTCCCCTCG 61.618 65.000 0.00 0.00 0.00 4.63
391 392 0.547954 ACCACTTCCTTCCTCCCCTC 60.548 60.000 0.00 0.00 0.00 4.30
392 393 0.842467 CACCACTTCCTTCCTCCCCT 60.842 60.000 0.00 0.00 0.00 4.79
393 394 1.685820 CACCACTTCCTTCCTCCCC 59.314 63.158 0.00 0.00 0.00 4.81
394 395 0.840722 TCCACCACTTCCTTCCTCCC 60.841 60.000 0.00 0.00 0.00 4.30
395 396 1.065126 CATCCACCACTTCCTTCCTCC 60.065 57.143 0.00 0.00 0.00 4.30
396 397 1.065126 CCATCCACCACTTCCTTCCTC 60.065 57.143 0.00 0.00 0.00 3.71
397 398 0.995024 CCATCCACCACTTCCTTCCT 59.005 55.000 0.00 0.00 0.00 3.36
398 399 0.034089 CCCATCCACCACTTCCTTCC 60.034 60.000 0.00 0.00 0.00 3.46
399 400 0.698818 ACCCATCCACCACTTCCTTC 59.301 55.000 0.00 0.00 0.00 3.46
400 401 1.158007 AACCCATCCACCACTTCCTT 58.842 50.000 0.00 0.00 0.00 3.36
401 402 0.405585 CAACCCATCCACCACTTCCT 59.594 55.000 0.00 0.00 0.00 3.36
402 403 1.250840 GCAACCCATCCACCACTTCC 61.251 60.000 0.00 0.00 0.00 3.46
403 404 0.251341 AGCAACCCATCCACCACTTC 60.251 55.000 0.00 0.00 0.00 3.01
404 405 0.540365 CAGCAACCCATCCACCACTT 60.540 55.000 0.00 0.00 0.00 3.16
405 406 1.075482 CAGCAACCCATCCACCACT 59.925 57.895 0.00 0.00 0.00 4.00
406 407 1.978617 CCAGCAACCCATCCACCAC 60.979 63.158 0.00 0.00 0.00 4.16
407 408 2.440147 CCAGCAACCCATCCACCA 59.560 61.111 0.00 0.00 0.00 4.17
408 409 3.070576 GCCAGCAACCCATCCACC 61.071 66.667 0.00 0.00 0.00 4.61
409 410 2.283101 TGCCAGCAACCCATCCAC 60.283 61.111 0.00 0.00 0.00 4.02
410 411 2.036098 CTGCCAGCAACCCATCCA 59.964 61.111 0.00 0.00 0.00 3.41
411 412 3.455469 GCTGCCAGCAACCCATCC 61.455 66.667 12.82 0.00 41.89 3.51
412 413 3.818787 CGCTGCCAGCAACCCATC 61.819 66.667 18.21 0.00 42.58 3.51
429 430 4.815108 CAAACCCTAGCCGCCCCC 62.815 72.222 0.00 0.00 0.00 5.40
435 436 1.077429 CCAGAGGCAAACCCTAGCC 60.077 63.158 0.00 0.00 46.60 3.93
436 437 1.077429 CCCAGAGGCAAACCCTAGC 60.077 63.158 0.00 0.00 46.60 3.42
461 462 4.803426 CTCCTGTGTCGCTCCGGC 62.803 72.222 0.00 0.00 0.00 6.13
462 463 3.062466 TCTCCTGTGTCGCTCCGG 61.062 66.667 0.00 0.00 0.00 5.14
463 464 2.179517 GTCTCCTGTGTCGCTCCG 59.820 66.667 0.00 0.00 0.00 4.63
464 465 2.574399 GGTCTCCTGTGTCGCTCC 59.426 66.667 0.00 0.00 0.00 4.70
465 466 2.179517 CGGTCTCCTGTGTCGCTC 59.820 66.667 0.00 0.00 0.00 5.03
466 467 4.057428 GCGGTCTCCTGTGTCGCT 62.057 66.667 0.00 0.00 42.62 4.93
468 469 4.778415 CGGCGGTCTCCTGTGTCG 62.778 72.222 0.00 0.00 0.00 4.35
469 470 3.681835 ACGGCGGTCTCCTGTGTC 61.682 66.667 13.24 0.00 0.00 3.67
470 471 3.991051 CACGGCGGTCTCCTGTGT 61.991 66.667 13.24 0.00 0.00 3.72
473 474 4.803426 GAGCACGGCGGTCTCCTG 62.803 72.222 13.24 0.00 39.15 3.86
475 476 3.876589 TTTGAGCACGGCGGTCTCC 62.877 63.158 21.80 9.43 42.88 3.71
476 477 1.959226 TTTTGAGCACGGCGGTCTC 60.959 57.895 13.24 17.01 42.88 3.36
477 478 2.110213 TTTTGAGCACGGCGGTCT 59.890 55.556 13.24 7.45 42.88 3.85
478 479 0.947180 TAGTTTTGAGCACGGCGGTC 60.947 55.000 13.24 5.47 42.75 4.79
479 480 1.070105 TAGTTTTGAGCACGGCGGT 59.930 52.632 13.24 0.00 0.00 5.68
480 481 0.949105 AGTAGTTTTGAGCACGGCGG 60.949 55.000 13.24 0.66 0.00 6.13
481 482 1.389106 GTAGTAGTTTTGAGCACGGCG 59.611 52.381 4.80 4.80 0.00 6.46
482 483 2.409975 TGTAGTAGTTTTGAGCACGGC 58.590 47.619 0.00 0.00 0.00 5.68
483 484 3.370978 CCATGTAGTAGTTTTGAGCACGG 59.629 47.826 0.00 0.00 0.00 4.94
484 485 4.091509 GTCCATGTAGTAGTTTTGAGCACG 59.908 45.833 0.00 0.00 0.00 5.34
485 486 5.238583 AGTCCATGTAGTAGTTTTGAGCAC 58.761 41.667 0.00 0.00 0.00 4.40
486 487 5.483685 AGTCCATGTAGTAGTTTTGAGCA 57.516 39.130 0.00 0.00 0.00 4.26
487 488 5.701290 ACAAGTCCATGTAGTAGTTTTGAGC 59.299 40.000 0.00 0.00 0.00 4.26
488 489 7.352719 GACAAGTCCATGTAGTAGTTTTGAG 57.647 40.000 0.00 0.00 32.57 3.02
505 506 4.810191 AATACAGGTCTCAGGACAAGTC 57.190 45.455 0.00 0.00 43.77 3.01
506 507 5.580998 TCTAATACAGGTCTCAGGACAAGT 58.419 41.667 0.00 0.00 43.77 3.16
507 508 6.531503 TTCTAATACAGGTCTCAGGACAAG 57.468 41.667 0.00 0.00 43.77 3.16
508 509 6.667848 TGATTCTAATACAGGTCTCAGGACAA 59.332 38.462 0.00 0.00 43.77 3.18
509 510 6.194967 TGATTCTAATACAGGTCTCAGGACA 58.805 40.000 0.00 0.00 43.77 4.02
510 511 6.716934 TGATTCTAATACAGGTCTCAGGAC 57.283 41.667 0.00 0.00 41.43 3.85
511 512 7.345653 ACATTGATTCTAATACAGGTCTCAGGA 59.654 37.037 0.00 0.00 0.00 3.86
512 513 7.504403 ACATTGATTCTAATACAGGTCTCAGG 58.496 38.462 0.00 0.00 0.00 3.86
513 514 8.954950 AACATTGATTCTAATACAGGTCTCAG 57.045 34.615 0.00 0.00 0.00 3.35
527 528 8.462016 GCACTACCAATTTCTAACATTGATTCT 58.538 33.333 0.00 0.00 34.05 2.40
528 529 8.243426 TGCACTACCAATTTCTAACATTGATTC 58.757 33.333 0.00 0.00 34.05 2.52
529 530 8.121305 TGCACTACCAATTTCTAACATTGATT 57.879 30.769 0.00 0.00 34.05 2.57
530 531 7.629222 GCTGCACTACCAATTTCTAACATTGAT 60.629 37.037 0.00 0.00 34.05 2.57
531 532 6.349280 GCTGCACTACCAATTTCTAACATTGA 60.349 38.462 0.00 0.00 34.05 2.57
532 533 5.801947 GCTGCACTACCAATTTCTAACATTG 59.198 40.000 0.00 0.00 0.00 2.82
533 534 5.105756 GGCTGCACTACCAATTTCTAACATT 60.106 40.000 0.50 0.00 0.00 2.71
534 535 4.399303 GGCTGCACTACCAATTTCTAACAT 59.601 41.667 0.50 0.00 0.00 2.71
535 536 3.756434 GGCTGCACTACCAATTTCTAACA 59.244 43.478 0.50 0.00 0.00 2.41
536 537 3.756434 TGGCTGCACTACCAATTTCTAAC 59.244 43.478 0.50 0.00 31.46 2.34
537 538 4.027674 TGGCTGCACTACCAATTTCTAA 57.972 40.909 0.50 0.00 31.46 2.10
538 539 3.712016 TGGCTGCACTACCAATTTCTA 57.288 42.857 0.50 0.00 31.46 2.10
539 540 2.584835 TGGCTGCACTACCAATTTCT 57.415 45.000 0.50 0.00 31.46 2.52
545 546 1.350684 TCTTGATTGGCTGCACTACCA 59.649 47.619 0.50 0.00 0.00 3.25
546 547 2.113860 TCTTGATTGGCTGCACTACC 57.886 50.000 0.50 0.00 0.00 3.18
547 548 3.065925 GGATTCTTGATTGGCTGCACTAC 59.934 47.826 0.50 0.00 0.00 2.73
548 549 3.054139 AGGATTCTTGATTGGCTGCACTA 60.054 43.478 0.50 0.00 0.00 2.74
549 550 2.097825 GGATTCTTGATTGGCTGCACT 58.902 47.619 0.50 0.00 0.00 4.40
550 551 2.097825 AGGATTCTTGATTGGCTGCAC 58.902 47.619 0.50 0.00 0.00 4.57
551 552 2.519771 AGGATTCTTGATTGGCTGCA 57.480 45.000 0.50 0.00 0.00 4.41
552 553 6.639632 TTATAAGGATTCTTGATTGGCTGC 57.360 37.500 0.00 0.00 34.59 5.25
553 554 8.469200 TGTTTTATAAGGATTCTTGATTGGCTG 58.531 33.333 0.00 0.00 34.59 4.85
554 555 8.593945 TGTTTTATAAGGATTCTTGATTGGCT 57.406 30.769 0.00 0.00 34.59 4.75
555 556 9.651913 TTTGTTTTATAAGGATTCTTGATTGGC 57.348 29.630 0.00 0.00 34.59 4.52
559 560 9.855021 CGGTTTTGTTTTATAAGGATTCTTGAT 57.145 29.630 0.00 0.00 34.59 2.57
560 561 7.810759 GCGGTTTTGTTTTATAAGGATTCTTGA 59.189 33.333 0.00 0.00 34.59 3.02
561 562 7.596995 TGCGGTTTTGTTTTATAAGGATTCTTG 59.403 33.333 0.00 0.00 34.59 3.02
562 563 7.662897 TGCGGTTTTGTTTTATAAGGATTCTT 58.337 30.769 0.00 0.00 37.03 2.52
563 564 7.222000 TGCGGTTTTGTTTTATAAGGATTCT 57.778 32.000 0.00 0.00 0.00 2.40
564 565 7.757624 TGATGCGGTTTTGTTTTATAAGGATTC 59.242 33.333 0.00 0.00 0.00 2.52
565 566 7.607250 TGATGCGGTTTTGTTTTATAAGGATT 58.393 30.769 0.00 0.00 0.00 3.01
566 567 7.164230 TGATGCGGTTTTGTTTTATAAGGAT 57.836 32.000 0.00 0.00 0.00 3.24
567 568 6.576662 TGATGCGGTTTTGTTTTATAAGGA 57.423 33.333 0.00 0.00 0.00 3.36
568 569 7.644986 TTTGATGCGGTTTTGTTTTATAAGG 57.355 32.000 0.00 0.00 0.00 2.69
571 572 9.915629 ACTAATTTGATGCGGTTTTGTTTTATA 57.084 25.926 0.00 0.00 0.00 0.98
572 573 8.707839 CACTAATTTGATGCGGTTTTGTTTTAT 58.292 29.630 0.00 0.00 0.00 1.40
573 574 7.306866 GCACTAATTTGATGCGGTTTTGTTTTA 60.307 33.333 0.00 0.00 0.00 1.52
574 575 6.510960 GCACTAATTTGATGCGGTTTTGTTTT 60.511 34.615 0.00 0.00 0.00 2.43
575 576 5.050431 GCACTAATTTGATGCGGTTTTGTTT 60.050 36.000 0.00 0.00 0.00 2.83
576 577 4.447389 GCACTAATTTGATGCGGTTTTGTT 59.553 37.500 0.00 0.00 0.00 2.83
577 578 3.987220 GCACTAATTTGATGCGGTTTTGT 59.013 39.130 0.00 0.00 0.00 2.83
578 579 4.236935 AGCACTAATTTGATGCGGTTTTG 58.763 39.130 0.00 0.00 44.25 2.44
579 580 4.519540 AGCACTAATTTGATGCGGTTTT 57.480 36.364 0.00 0.00 44.25 2.43
580 581 4.519540 AAGCACTAATTTGATGCGGTTT 57.480 36.364 0.00 0.00 44.25 3.27
581 582 4.519540 AAAGCACTAATTTGATGCGGTT 57.480 36.364 0.00 0.00 44.25 4.44
582 583 4.941263 TCTAAAGCACTAATTTGATGCGGT 59.059 37.500 0.00 0.00 44.25 5.68
583 584 5.484173 TCTAAAGCACTAATTTGATGCGG 57.516 39.130 0.00 0.00 44.25 5.69
584 585 6.775088 TCTTCTAAAGCACTAATTTGATGCG 58.225 36.000 0.00 0.00 44.25 4.73
617 618 8.922676 CCGACAGCGTTTAGATATGTTTATTAT 58.077 33.333 0.00 0.00 35.23 1.28
618 619 7.922278 ACCGACAGCGTTTAGATATGTTTATTA 59.078 33.333 0.00 0.00 35.23 0.98
619 620 6.759827 ACCGACAGCGTTTAGATATGTTTATT 59.240 34.615 0.00 0.00 35.23 1.40
620 621 6.278363 ACCGACAGCGTTTAGATATGTTTAT 58.722 36.000 0.00 0.00 35.23 1.40
621 622 5.653507 ACCGACAGCGTTTAGATATGTTTA 58.346 37.500 0.00 0.00 35.23 2.01
622 623 4.501071 ACCGACAGCGTTTAGATATGTTT 58.499 39.130 0.00 0.00 35.23 2.83
623 624 4.119442 ACCGACAGCGTTTAGATATGTT 57.881 40.909 0.00 0.00 35.23 2.71
624 625 3.795623 ACCGACAGCGTTTAGATATGT 57.204 42.857 0.00 0.00 35.23 2.29
625 626 3.662645 CGTACCGACAGCGTTTAGATATG 59.337 47.826 0.00 0.00 35.23 1.78
626 627 3.304257 CCGTACCGACAGCGTTTAGATAT 60.304 47.826 0.00 0.00 35.23 1.63
627 628 2.032054 CCGTACCGACAGCGTTTAGATA 59.968 50.000 0.00 0.00 35.23 1.98
628 629 1.202222 CCGTACCGACAGCGTTTAGAT 60.202 52.381 0.00 0.00 35.23 1.98
629 630 0.168788 CCGTACCGACAGCGTTTAGA 59.831 55.000 0.00 0.00 35.23 2.10
630 631 0.109597 ACCGTACCGACAGCGTTTAG 60.110 55.000 0.00 0.00 35.23 1.85
631 632 0.313672 AACCGTACCGACAGCGTTTA 59.686 50.000 0.00 0.00 35.23 2.01
632 633 0.530431 AAACCGTACCGACAGCGTTT 60.530 50.000 0.00 0.00 35.23 3.60
633 634 1.067916 AAACCGTACCGACAGCGTT 59.932 52.632 0.00 0.00 35.23 4.84
634 635 1.662446 CAAACCGTACCGACAGCGT 60.662 57.895 0.00 0.00 35.23 5.07
635 636 3.007070 GCAAACCGTACCGACAGCG 62.007 63.158 0.00 0.00 37.24 5.18
636 637 2.674084 GGCAAACCGTACCGACAGC 61.674 63.158 0.00 0.00 0.00 4.40
637 638 1.301087 TGGCAAACCGTACCGACAG 60.301 57.895 0.00 0.00 39.70 3.51
638 639 1.594836 GTGGCAAACCGTACCGACA 60.595 57.895 0.00 0.00 39.70 4.35
639 640 1.594836 TGTGGCAAACCGTACCGAC 60.595 57.895 0.00 0.00 39.70 4.79
640 641 1.594836 GTGTGGCAAACCGTACCGA 60.595 57.895 0.00 0.00 39.70 4.69
641 642 2.609759 GGTGTGGCAAACCGTACCG 61.610 63.158 11.91 0.00 39.70 4.02
642 643 1.512156 CTGGTGTGGCAAACCGTACC 61.512 60.000 21.62 8.52 42.20 3.34
643 644 1.512156 CCTGGTGTGGCAAACCGTAC 61.512 60.000 21.62 0.00 40.86 3.67
644 645 1.228003 CCTGGTGTGGCAAACCGTA 60.228 57.895 21.62 4.50 40.86 4.02
645 646 2.351924 ATCCTGGTGTGGCAAACCGT 62.352 55.000 21.62 5.28 40.86 4.83
646 647 1.178534 AATCCTGGTGTGGCAAACCG 61.179 55.000 21.62 15.50 40.86 4.44
647 648 1.818674 CTAATCCTGGTGTGGCAAACC 59.181 52.381 20.43 20.43 38.26 3.27
648 649 2.790433 TCTAATCCTGGTGTGGCAAAC 58.210 47.619 0.00 0.00 0.00 2.93
649 650 3.153919 GTTCTAATCCTGGTGTGGCAAA 58.846 45.455 0.00 0.00 0.00 3.68
650 651 2.375174 AGTTCTAATCCTGGTGTGGCAA 59.625 45.455 0.00 0.00 0.00 4.52
651 652 1.985159 AGTTCTAATCCTGGTGTGGCA 59.015 47.619 0.00 0.00 0.00 4.92
652 653 2.027192 TGAGTTCTAATCCTGGTGTGGC 60.027 50.000 0.00 0.00 0.00 5.01
653 654 3.007940 TGTGAGTTCTAATCCTGGTGTGG 59.992 47.826 0.00 0.00 0.00 4.17
654 655 4.271696 TGTGAGTTCTAATCCTGGTGTG 57.728 45.455 0.00 0.00 0.00 3.82
655 656 4.348168 AGTTGTGAGTTCTAATCCTGGTGT 59.652 41.667 0.00 0.00 0.00 4.16
656 657 4.692625 CAGTTGTGAGTTCTAATCCTGGTG 59.307 45.833 0.00 0.00 0.00 4.17
657 658 4.593206 TCAGTTGTGAGTTCTAATCCTGGT 59.407 41.667 0.00 0.00 0.00 4.00
658 659 4.932200 GTCAGTTGTGAGTTCTAATCCTGG 59.068 45.833 0.00 0.00 31.53 4.45
659 660 4.932200 GGTCAGTTGTGAGTTCTAATCCTG 59.068 45.833 0.00 0.00 31.53 3.86
660 661 4.020128 GGGTCAGTTGTGAGTTCTAATCCT 60.020 45.833 0.00 0.00 31.53 3.24
661 662 4.254492 GGGTCAGTTGTGAGTTCTAATCC 58.746 47.826 0.00 0.00 31.53 3.01
662 663 4.894784 TGGGTCAGTTGTGAGTTCTAATC 58.105 43.478 0.00 0.00 31.53 1.75
663 664 4.263068 CCTGGGTCAGTTGTGAGTTCTAAT 60.263 45.833 0.00 0.00 31.53 1.73
664 665 3.071023 CCTGGGTCAGTTGTGAGTTCTAA 59.929 47.826 0.00 0.00 31.53 2.10
665 666 2.632996 CCTGGGTCAGTTGTGAGTTCTA 59.367 50.000 0.00 0.00 31.53 2.10
666 667 1.417890 CCTGGGTCAGTTGTGAGTTCT 59.582 52.381 0.00 0.00 31.53 3.01
667 668 1.141053 ACCTGGGTCAGTTGTGAGTTC 59.859 52.381 0.00 0.00 31.53 3.01
668 669 1.141053 GACCTGGGTCAGTTGTGAGTT 59.859 52.381 14.20 0.00 44.02 3.01
669 670 0.759346 GACCTGGGTCAGTTGTGAGT 59.241 55.000 14.20 0.00 44.02 3.41
670 671 3.614399 GACCTGGGTCAGTTGTGAG 57.386 57.895 14.20 0.00 44.02 3.51
679 680 2.519013 AGCAATTCTTTGACCTGGGTC 58.481 47.619 12.43 12.43 44.77 4.46
680 681 2.683211 AGCAATTCTTTGACCTGGGT 57.317 45.000 0.00 0.00 34.60 4.51
681 682 3.690460 AGTAGCAATTCTTTGACCTGGG 58.310 45.455 0.00 0.00 34.60 4.45
682 683 7.275920 ACTATAGTAGCAATTCTTTGACCTGG 58.724 38.462 2.75 0.00 34.60 4.45
683 684 7.168302 CGACTATAGTAGCAATTCTTTGACCTG 59.832 40.741 5.09 0.00 34.60 4.00
684 685 7.068348 TCGACTATAGTAGCAATTCTTTGACCT 59.932 37.037 5.09 0.00 34.60 3.85
685 686 7.201145 TCGACTATAGTAGCAATTCTTTGACC 58.799 38.462 5.09 0.00 34.60 4.02
686 687 8.804688 ATCGACTATAGTAGCAATTCTTTGAC 57.195 34.615 5.09 0.00 34.60 3.18
687 688 8.082852 GGATCGACTATAGTAGCAATTCTTTGA 58.917 37.037 5.09 0.00 34.60 2.69
688 689 7.329717 GGGATCGACTATAGTAGCAATTCTTTG 59.670 40.741 5.09 0.00 35.85 2.77
689 690 7.015292 TGGGATCGACTATAGTAGCAATTCTTT 59.985 37.037 5.09 0.00 0.00 2.52
690 691 6.493802 TGGGATCGACTATAGTAGCAATTCTT 59.506 38.462 5.09 0.00 0.00 2.52
691 692 6.010850 TGGGATCGACTATAGTAGCAATTCT 58.989 40.000 5.09 0.00 0.00 2.40
692 693 6.268825 TGGGATCGACTATAGTAGCAATTC 57.731 41.667 5.09 1.79 0.00 2.17
693 694 6.665680 AGATGGGATCGACTATAGTAGCAATT 59.334 38.462 5.09 0.00 0.00 2.32
694 695 6.191315 AGATGGGATCGACTATAGTAGCAAT 58.809 40.000 5.09 0.00 0.00 3.56
695 696 5.571285 AGATGGGATCGACTATAGTAGCAA 58.429 41.667 5.09 0.00 0.00 3.91
696 697 5.180810 AGATGGGATCGACTATAGTAGCA 57.819 43.478 5.09 0.00 0.00 3.49
697 698 5.883673 AGAAGATGGGATCGACTATAGTAGC 59.116 44.000 5.09 0.00 0.00 3.58
698 699 7.931578 AAGAAGATGGGATCGACTATAGTAG 57.068 40.000 5.09 5.97 0.00 2.57
699 700 7.309255 GCAAAGAAGATGGGATCGACTATAGTA 60.309 40.741 5.09 0.00 0.00 1.82
700 701 6.517529 GCAAAGAAGATGGGATCGACTATAGT 60.518 42.308 4.68 4.68 0.00 2.12
701 702 5.866633 GCAAAGAAGATGGGATCGACTATAG 59.133 44.000 0.00 0.00 0.00 1.31
702 703 5.564848 CGCAAAGAAGATGGGATCGACTATA 60.565 44.000 0.00 0.00 32.93 1.31
703 704 4.636249 GCAAAGAAGATGGGATCGACTAT 58.364 43.478 0.00 0.00 0.00 2.12
735 736 3.448093 TGTGCACCCCTCATCATTTTA 57.552 42.857 15.69 0.00 0.00 1.52
743 744 2.836154 GTCCTTGTGCACCCCTCA 59.164 61.111 15.69 0.00 0.00 3.86
777 778 1.463444 GGAAGTTGGTTTCCGATCGTG 59.537 52.381 15.09 5.81 37.48 4.35
835 843 5.300286 GCTAATTAGGAGTACGTACCTTCCA 59.700 44.000 26.84 13.80 37.68 3.53
836 844 5.300286 TGCTAATTAGGAGTACGTACCTTCC 59.700 44.000 21.80 21.27 37.68 3.46
838 846 5.301298 CCTGCTAATTAGGAGTACGTACCTT 59.699 44.000 26.49 12.11 39.78 3.50
840 848 4.022503 CCCTGCTAATTAGGAGTACGTACC 60.023 50.000 26.49 13.02 39.78 3.34
841 849 4.558296 GCCCTGCTAATTAGGAGTACGTAC 60.558 50.000 26.49 18.10 39.78 3.67
842 850 3.571401 GCCCTGCTAATTAGGAGTACGTA 59.429 47.826 26.49 0.00 39.78 3.57
843 851 2.364647 GCCCTGCTAATTAGGAGTACGT 59.635 50.000 26.49 0.00 39.78 3.57
844 852 2.364324 TGCCCTGCTAATTAGGAGTACG 59.636 50.000 26.49 16.80 39.78 3.67
845 853 4.101119 TCTTGCCCTGCTAATTAGGAGTAC 59.899 45.833 26.49 19.63 39.78 2.73
846 854 4.295201 TCTTGCCCTGCTAATTAGGAGTA 58.705 43.478 26.49 13.62 39.78 2.59
847 855 3.115390 TCTTGCCCTGCTAATTAGGAGT 58.885 45.455 26.49 0.00 39.78 3.85
848 856 3.845781 TCTTGCCCTGCTAATTAGGAG 57.154 47.619 23.21 23.21 40.91 3.69
849 857 3.780294 TCTTCTTGCCCTGCTAATTAGGA 59.220 43.478 14.28 10.50 37.52 2.94
850 858 4.133078 CTCTTCTTGCCCTGCTAATTAGG 58.867 47.826 14.28 0.00 35.01 2.69
851 859 4.133078 CCTCTTCTTGCCCTGCTAATTAG 58.867 47.826 8.20 8.20 0.00 1.73
852 860 3.117888 CCCTCTTCTTGCCCTGCTAATTA 60.118 47.826 0.00 0.00 0.00 1.40
853 861 2.357569 CCCTCTTCTTGCCCTGCTAATT 60.358 50.000 0.00 0.00 0.00 1.40
854 862 1.213926 CCCTCTTCTTGCCCTGCTAAT 59.786 52.381 0.00 0.00 0.00 1.73
855 863 0.620556 CCCTCTTCTTGCCCTGCTAA 59.379 55.000 0.00 0.00 0.00 3.09
856 864 0.252696 TCCCTCTTCTTGCCCTGCTA 60.253 55.000 0.00 0.00 0.00 3.49
857 865 1.539869 TCCCTCTTCTTGCCCTGCT 60.540 57.895 0.00 0.00 0.00 4.24
858 866 1.377856 GTCCCTCTTCTTGCCCTGC 60.378 63.158 0.00 0.00 0.00 4.85
859 867 0.251634 GAGTCCCTCTTCTTGCCCTG 59.748 60.000 0.00 0.00 0.00 4.45
860 868 1.261238 CGAGTCCCTCTTCTTGCCCT 61.261 60.000 0.00 0.00 0.00 5.19
861 869 1.219393 CGAGTCCCTCTTCTTGCCC 59.781 63.158 0.00 0.00 0.00 5.36
862 870 1.219393 CCGAGTCCCTCTTCTTGCC 59.781 63.158 0.00 0.00 0.00 4.52
863 871 0.108567 GTCCGAGTCCCTCTTCTTGC 60.109 60.000 0.00 0.00 0.00 4.01
864 872 1.551452 AGTCCGAGTCCCTCTTCTTG 58.449 55.000 0.00 0.00 0.00 3.02
865 873 2.172679 GAAGTCCGAGTCCCTCTTCTT 58.827 52.381 7.93 0.00 33.86 2.52
866 874 1.356398 AGAAGTCCGAGTCCCTCTTCT 59.644 52.381 10.57 10.57 39.60 2.85
867 875 1.842052 AGAAGTCCGAGTCCCTCTTC 58.158 55.000 7.38 7.38 35.98 2.87
868 876 2.312424 AAGAAGTCCGAGTCCCTCTT 57.688 50.000 0.00 0.00 0.00 2.85
869 877 2.312424 AAAGAAGTCCGAGTCCCTCT 57.688 50.000 0.00 0.00 0.00 3.69
870 878 3.404224 AAAAAGAAGTCCGAGTCCCTC 57.596 47.619 0.00 0.00 0.00 4.30
874 882 5.388408 TCCTCTAAAAAGAAGTCCGAGTC 57.612 43.478 0.00 0.00 0.00 3.36
932 1005 7.035840 AGGTTGGTACGTTATGTATGTCTAG 57.964 40.000 0.00 0.00 35.02 2.43
934 1007 5.927281 AGGTTGGTACGTTATGTATGTCT 57.073 39.130 0.00 0.00 35.02 3.41
947 1020 1.399791 CTCCGACGAGTAGGTTGGTAC 59.600 57.143 0.00 0.00 41.47 3.34
952 1043 0.035247 AGCTCTCCGACGAGTAGGTT 60.035 55.000 0.00 0.00 37.40 3.50
1038 1133 2.434884 CTCACGTGGAGCGGCATT 60.435 61.111 17.00 0.00 46.52 3.56
1100 1195 0.741221 GAATGTGCGGACAGTCTCCC 60.741 60.000 26.94 4.27 42.66 4.30
1130 1226 4.036027 CCACTGTGATTATCCACAAGATGC 59.964 45.833 9.86 0.00 45.27 3.91
1142 1238 2.037902 TGCTTCGGTTCCACTGTGATTA 59.962 45.455 9.86 0.00 0.00 1.75
1143 1239 1.202758 TGCTTCGGTTCCACTGTGATT 60.203 47.619 9.86 0.00 0.00 2.57
1160 1256 3.055385 TGCTAGACCCTCGTTAAATTGCT 60.055 43.478 0.00 0.00 0.00 3.91
1167 1263 2.219458 CGATCTGCTAGACCCTCGTTA 58.781 52.381 0.00 0.00 0.00 3.18
1176 1272 1.966354 ACATGGATGCGATCTGCTAGA 59.034 47.619 0.00 0.00 46.63 2.43
1199 1295 3.075641 GGGAGTGGAGGTCGACCC 61.076 72.222 30.82 21.02 36.42 4.46
1251 1347 3.574396 GGACTTCCATGGAGATGTCGATA 59.426 47.826 24.96 7.42 40.22 2.92
1275 1371 4.047059 TTCTCGCCGGTCACGTCC 62.047 66.667 1.90 0.00 38.78 4.79
1450 1549 2.994578 GCTCGTTAGGTTTGGAGAAGAC 59.005 50.000 0.00 0.00 0.00 3.01
1477 1576 3.706373 GACCTGCGGCTCCAAGGA 61.706 66.667 10.71 0.00 0.00 3.36
1516 1615 0.461548 TAGAAGCTGCCGATGGTGAG 59.538 55.000 0.00 0.00 0.00 3.51
1590 1689 2.124983 CATCTGCACCCTCCCACG 60.125 66.667 0.00 0.00 0.00 4.94
1756 1876 8.526978 CAGCCTGCATCTATAAAAGTATCTAGA 58.473 37.037 0.00 0.00 0.00 2.43
1758 1878 7.454694 TCCAGCCTGCATCTATAAAAGTATCTA 59.545 37.037 0.00 0.00 0.00 1.98
1760 1880 6.467677 TCCAGCCTGCATCTATAAAAGTATC 58.532 40.000 0.00 0.00 0.00 2.24
1767 1899 2.847327 GCTCCAGCCTGCATCTATAA 57.153 50.000 0.00 0.00 34.31 0.98
1806 1938 0.762418 ACCGAACAATGAGGTGGTCA 59.238 50.000 0.00 0.00 40.38 4.02
1811 1943 1.671054 CGGCACCGAACAATGAGGT 60.671 57.895 2.01 0.00 42.83 3.85
1837 1969 5.549619 AGCTTAGCCTCTCCACCATTATAAT 59.450 40.000 0.00 0.00 0.00 1.28
1847 1979 1.497161 GGGTAAGCTTAGCCTCTCCA 58.503 55.000 36.46 1.50 45.48 3.86
1857 1989 1.295020 TAGTGGCATGGGGTAAGCTT 58.705 50.000 3.48 3.48 0.00 3.74
1875 2007 3.938963 GTGGAATCTTCTCAACCGCAATA 59.061 43.478 0.00 0.00 0.00 1.90
1879 2011 0.721718 CGTGGAATCTTCTCAACCGC 59.278 55.000 0.00 0.00 0.00 5.68
1884 2016 7.393234 ACCATTATTTTTCGTGGAATCTTCTCA 59.607 33.333 0.00 0.00 35.69 3.27
1896 2028 4.157840 GGCTTCTCCACCATTATTTTTCGT 59.842 41.667 0.00 0.00 34.01 3.85
1899 2031 4.340617 TCGGCTTCTCCACCATTATTTTT 58.659 39.130 0.00 0.00 34.01 1.94
1900 2032 3.947834 CTCGGCTTCTCCACCATTATTTT 59.052 43.478 0.00 0.00 34.01 1.82
1901 2033 3.545703 CTCGGCTTCTCCACCATTATTT 58.454 45.455 0.00 0.00 34.01 1.40
1902 2034 2.746472 GCTCGGCTTCTCCACCATTATT 60.746 50.000 0.00 0.00 34.01 1.40
1903 2035 1.202698 GCTCGGCTTCTCCACCATTAT 60.203 52.381 0.00 0.00 34.01 1.28
1904 2036 0.178068 GCTCGGCTTCTCCACCATTA 59.822 55.000 0.00 0.00 34.01 1.90
1905 2037 1.078143 GCTCGGCTTCTCCACCATT 60.078 57.895 0.00 0.00 34.01 3.16
1906 2038 1.557269 AAGCTCGGCTTCTCCACCAT 61.557 55.000 5.44 0.00 46.77 3.55
1907 2039 2.217038 AAGCTCGGCTTCTCCACCA 61.217 57.895 5.44 0.00 46.77 4.17
1908 2040 1.743252 CAAGCTCGGCTTCTCCACC 60.743 63.158 7.99 0.00 46.77 4.61
1909 2041 2.394563 GCAAGCTCGGCTTCTCCAC 61.395 63.158 7.99 0.00 46.77 4.02
1910 2042 2.046892 GCAAGCTCGGCTTCTCCA 60.047 61.111 7.99 0.00 46.77 3.86
1911 2043 2.821810 GGCAAGCTCGGCTTCTCC 60.822 66.667 7.99 8.70 46.77 3.71
1912 2044 2.821810 GGGCAAGCTCGGCTTCTC 60.822 66.667 7.99 4.23 46.77 2.87
1913 2045 4.767255 CGGGCAAGCTCGGCTTCT 62.767 66.667 6.40 0.00 46.77 2.85
1919 2051 4.680237 TGTCCACGGGCAAGCTCG 62.680 66.667 13.48 13.48 46.76 5.03
1920 2052 2.281484 TTGTCCACGGGCAAGCTC 60.281 61.111 0.00 0.00 0.00 4.09
1921 2053 2.129555 ATCTTGTCCACGGGCAAGCT 62.130 55.000 22.87 12.73 41.15 3.74
1922 2054 1.244019 AATCTTGTCCACGGGCAAGC 61.244 55.000 22.87 0.00 41.15 4.01
1923 2055 0.804989 GAATCTTGTCCACGGGCAAG 59.195 55.000 21.90 21.90 42.32 4.01
1924 2056 0.608035 GGAATCTTGTCCACGGGCAA 60.608 55.000 2.61 2.61 37.65 4.52
1925 2057 1.002624 GGAATCTTGTCCACGGGCA 60.003 57.895 0.00 0.00 37.65 5.36
1926 2058 0.744771 GAGGAATCTTGTCCACGGGC 60.745 60.000 0.00 0.00 40.48 6.13
1927 2059 0.613260 TGAGGAATCTTGTCCACGGG 59.387 55.000 0.00 0.00 40.48 5.28
1928 2060 2.472695 TTGAGGAATCTTGTCCACGG 57.527 50.000 0.00 0.00 40.48 4.94
1929 2061 4.829064 TTTTTGAGGAATCTTGTCCACG 57.171 40.909 0.00 0.00 40.48 4.94
1955 2087 3.302347 AAGCTCGGCTTCTCCACCG 62.302 63.158 5.44 0.00 46.77 4.94
2008 2143 3.432252 GGAGTTTGTACTGATTCGGTGTG 59.568 47.826 8.44 0.00 33.84 3.82
2009 2144 3.323979 AGGAGTTTGTACTGATTCGGTGT 59.676 43.478 8.44 0.00 33.84 4.16
2020 2155 3.552294 GCGCTCAATAGAGGAGTTTGTAC 59.448 47.826 0.00 0.00 42.33 2.90
2022 2157 2.622436 GCGCTCAATAGAGGAGTTTGT 58.378 47.619 0.00 0.00 42.33 2.83
2024 2159 1.555075 TGGCGCTCAATAGAGGAGTTT 59.445 47.619 7.64 0.00 42.33 2.66
2035 2170 1.206849 TCAGTCATACATGGCGCTCAA 59.793 47.619 7.64 0.00 37.51 3.02
2052 2187 3.195182 TCCAAGCAGATCTCTTGTCTCAG 59.805 47.826 22.45 13.19 39.30 3.35
2073 2208 6.868339 ACTAGTTTTGCATTGGCTTTGTAATC 59.132 34.615 0.00 0.00 41.91 1.75
2133 2911 5.115480 TGGCAGTTCCTTCAAATTTGAAAC 58.885 37.500 28.49 23.78 45.61 2.78
2142 2920 2.665165 ACACAATGGCAGTTCCTTCAA 58.335 42.857 0.00 0.00 35.26 2.69
2143 2921 2.363306 ACACAATGGCAGTTCCTTCA 57.637 45.000 0.00 0.00 35.26 3.02
2144 2922 2.622942 TGAACACAATGGCAGTTCCTTC 59.377 45.455 12.93 2.61 40.58 3.46
2145 2923 2.665165 TGAACACAATGGCAGTTCCTT 58.335 42.857 12.93 0.00 40.58 3.36
2146 2924 2.363306 TGAACACAATGGCAGTTCCT 57.637 45.000 12.93 0.00 40.58 3.36
2147 2925 3.758554 AGTATGAACACAATGGCAGTTCC 59.241 43.478 12.93 1.12 40.58 3.62
2148 2926 5.065218 CCTAGTATGAACACAATGGCAGTTC 59.935 44.000 9.65 9.65 41.42 3.01
2149 2927 4.943705 CCTAGTATGAACACAATGGCAGTT 59.056 41.667 0.00 0.00 0.00 3.16
2150 2928 4.019321 ACCTAGTATGAACACAATGGCAGT 60.019 41.667 0.00 0.00 0.00 4.40
2151 2929 4.517285 ACCTAGTATGAACACAATGGCAG 58.483 43.478 0.00 0.00 0.00 4.85
2153 2931 5.897377 AAACCTAGTATGAACACAATGGC 57.103 39.130 0.00 0.00 0.00 4.40
2154 2932 7.040755 TGTGAAAACCTAGTATGAACACAATGG 60.041 37.037 0.00 0.00 33.82 3.16
2155 2933 7.870826 TGTGAAAACCTAGTATGAACACAATG 58.129 34.615 0.00 0.00 33.82 2.82
2156 2934 8.635765 ATGTGAAAACCTAGTATGAACACAAT 57.364 30.769 0.00 0.00 38.76 2.71
2157 2935 8.458573 AATGTGAAAACCTAGTATGAACACAA 57.541 30.769 0.00 0.00 38.76 3.33
2158 2936 9.733556 ATAATGTGAAAACCTAGTATGAACACA 57.266 29.630 0.00 0.00 39.40 3.72
2182 2960 7.816031 GCACGGGCATTCTACTAGTTAATAATA 59.184 37.037 3.77 0.00 40.72 0.98
2185 2963 5.535333 GCACGGGCATTCTACTAGTTAATA 58.465 41.667 3.77 0.00 40.72 0.98
2186 2964 4.377897 GCACGGGCATTCTACTAGTTAAT 58.622 43.478 3.77 0.00 40.72 1.40
2187 2965 3.735820 CGCACGGGCATTCTACTAGTTAA 60.736 47.826 11.77 0.00 41.24 2.01
2188 2966 2.223641 CGCACGGGCATTCTACTAGTTA 60.224 50.000 11.77 0.00 41.24 2.24
2291 3710 1.906574 AGTACCCGATTGTGTCCACAT 59.093 47.619 0.20 0.00 41.52 3.21
2310 3729 7.202016 TGCAAGTGAAGTGGACTTAAATTAG 57.798 36.000 0.00 0.00 36.11 1.73
2375 6368 1.340889 TGTTTTCCTGCATTGTGGCTC 59.659 47.619 0.00 0.00 34.04 4.70
2518 7945 7.378728 GGTTTGACTATTGCGGCTATATTTTTC 59.621 37.037 4.66 1.56 0.00 2.29
2729 8157 1.066858 AGTTGGAGCACCATAGTCACG 60.067 52.381 2.87 0.00 46.34 4.35
2748 8176 3.179443 TGTCGCAGCCCTAGAAATTAG 57.821 47.619 0.00 0.00 0.00 1.73
2749 8177 3.620427 TTGTCGCAGCCCTAGAAATTA 57.380 42.857 0.00 0.00 0.00 1.40
2750 8178 2.489938 TTGTCGCAGCCCTAGAAATT 57.510 45.000 0.00 0.00 0.00 1.82
2762 8218 3.153024 GGTGAAGCCTATTGTCGCA 57.847 52.632 0.00 0.00 0.00 5.10
2875 8472 1.847798 ATAAGGCGAAGGGGTGTGCA 61.848 55.000 0.00 0.00 0.00 4.57
2876 8473 0.679960 AATAAGGCGAAGGGGTGTGC 60.680 55.000 0.00 0.00 0.00 4.57
2942 8540 2.808906 AGTACTTGCCTTCCCCATTC 57.191 50.000 0.00 0.00 0.00 2.67
2945 8543 2.627933 ACTAAGTACTTGCCTTCCCCA 58.372 47.619 18.56 0.00 0.00 4.96
2949 8547 6.535508 CCTACATCAACTAAGTACTTGCCTTC 59.464 42.308 18.56 0.00 0.00 3.46
2962 8560 3.579586 ACGGTGTTTCCCTACATCAACTA 59.420 43.478 0.00 0.00 0.00 2.24
2987 8585 3.000727 GACCATTCTAACCTGTGAACCG 58.999 50.000 0.00 0.00 0.00 4.44
2995 8593 2.838202 ACGATGGTGACCATTCTAACCT 59.162 45.455 19.60 0.00 45.26 3.50
2997 8595 4.000988 ACAACGATGGTGACCATTCTAAC 58.999 43.478 19.60 4.32 45.26 2.34
3015 8613 3.356290 AGAAGGCATGGGTGATAACAAC 58.644 45.455 0.00 0.00 0.00 3.32
3019 8617 3.620488 GTGAAGAAGGCATGGGTGATAA 58.380 45.455 0.00 0.00 0.00 1.75
3026 8624 1.747355 GACATGGTGAAGAAGGCATGG 59.253 52.381 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.