Multiple sequence alignment - TraesCS3B01G354900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G354900 chr3B 100.000 6379 0 0 1 6379 565264645 565271023 0.000000e+00 11780.0
1 TraesCS3B01G354900 chr3B 86.022 186 23 3 363 545 670692320 670692505 5.050000e-46 196.0
2 TraesCS3B01G354900 chr3B 91.667 96 8 0 5547 5642 565270286 565270191 4.010000e-27 134.0
3 TraesCS3B01G354900 chr3D 93.090 4356 180 40 1764 6077 433134157 433138433 0.000000e+00 6264.0
4 TraesCS3B01G354900 chr3D 91.473 1677 86 20 1 1652 433132439 433134083 0.000000e+00 2252.0
5 TraesCS3B01G354900 chr3D 95.833 144 3 2 6237 6379 433138432 433138573 4.970000e-56 230.0
6 TraesCS3B01G354900 chr3D 85.864 191 20 4 374 557 589577907 589577717 5.050000e-46 196.0
7 TraesCS3B01G354900 chr3D 87.069 116 9 6 1653 1767 185621639 185621529 6.710000e-25 126.0
8 TraesCS3B01G354900 chr3A 94.223 3029 123 21 3090 6077 571177110 571180127 0.000000e+00 4577.0
9 TraesCS3B01G354900 chr3A 91.991 1336 70 18 1 1327 571173940 571175247 0.000000e+00 1840.0
10 TraesCS3B01G354900 chr3A 91.995 862 41 11 1764 2620 571175685 571176523 0.000000e+00 1184.0
11 TraesCS3B01G354900 chr3A 89.823 452 38 3 2605 3052 571176541 571176988 1.990000e-159 573.0
12 TraesCS3B01G354900 chr3A 90.449 356 24 6 1304 1654 571175267 571175617 1.620000e-125 460.0
13 TraesCS3B01G354900 chr3A 94.857 175 7 2 6075 6247 265538906 265539080 8.150000e-69 272.0
14 TraesCS3B01G354900 chr3A 94.444 144 5 2 6237 6379 571180126 571180267 1.080000e-52 219.0
15 TraesCS3B01G354900 chr3A 100.000 31 0 0 1735 1765 571175618 571175648 2.480000e-04 58.4
16 TraesCS3B01G354900 chr6D 96.386 166 4 2 6075 6238 97856585 97856420 8.150000e-69 272.0
17 TraesCS3B01G354900 chr6D 94.253 174 8 2 6067 6238 128888368 128888195 1.360000e-66 265.0
18 TraesCS3B01G354900 chr4D 94.767 172 7 2 6074 6243 404108744 404108573 3.790000e-67 267.0
19 TraesCS3B01G354900 chr4D 92.632 95 5 2 1644 1737 41339506 41339599 1.120000e-27 135.0
20 TraesCS3B01G354900 chr4D 92.632 95 5 2 1644 1737 272009941 272010034 1.120000e-27 135.0
21 TraesCS3B01G354900 chr4D 92.553 94 6 1 5552 5645 450203791 450203699 4.010000e-27 134.0
22 TraesCS3B01G354900 chr1D 93.443 183 7 5 6063 6242 238940205 238940385 3.790000e-67 267.0
23 TraesCS3B01G354900 chr5A 94.253 174 8 2 6067 6238 206730843 206731016 1.360000e-66 265.0
24 TraesCS3B01G354900 chr5A 84.834 211 24 8 342 545 689612567 689612358 8.380000e-49 206.0
25 TraesCS3B01G354900 chr5A 89.000 100 9 2 5543 5642 569803298 569803201 8.690000e-24 122.0
26 TraesCS3B01G354900 chr2D 94.220 173 8 2 6075 6245 207665125 207664953 4.900000e-66 263.0
27 TraesCS3B01G354900 chr2D 89.720 107 9 2 1642 1746 263240489 263240595 1.120000e-27 135.0
28 TraesCS3B01G354900 chr1A 93.714 175 9 2 6066 6238 377500220 377500394 1.760000e-65 261.0
29 TraesCS3B01G354900 chr5B 92.778 180 12 1 6061 6239 532308877 532309056 6.340000e-65 259.0
30 TraesCS3B01G354900 chr5B 92.135 89 6 1 5549 5637 680853338 680853425 2.410000e-24 124.0
31 TraesCS3B01G354900 chr4A 85.644 202 21 5 363 557 568617552 568617752 8.380000e-49 206.0
32 TraesCS3B01G354900 chr4A 91.489 94 7 1 5552 5645 16469323 16469415 1.870000e-25 128.0
33 TraesCS3B01G354900 chr4B 86.702 188 20 5 363 546 48905096 48904910 3.020000e-48 204.0
34 TraesCS3B01G354900 chr4B 91.489 94 6 2 5552 5645 563210609 563210518 1.870000e-25 128.0
35 TraesCS3B01G354900 chr7A 85.789 190 19 3 363 544 102520474 102520663 1.810000e-45 195.0
36 TraesCS3B01G354900 chr6A 85.340 191 23 5 363 550 3643759 3643947 6.530000e-45 193.0
37 TraesCS3B01G354900 chr7B 93.750 96 6 0 1644 1739 715360408 715360313 1.850000e-30 145.0
38 TraesCS3B01G354900 chr1B 93.617 94 6 0 1646 1739 426463811 426463904 2.400000e-29 141.0
39 TraesCS3B01G354900 chr1B 89.623 106 9 2 1653 1757 117282743 117282847 4.010000e-27 134.0
40 TraesCS3B01G354900 chr5D 92.632 95 5 2 1644 1737 237195273 237195366 1.120000e-27 135.0
41 TraesCS3B01G354900 chr5D 94.382 89 4 1 5552 5640 539150919 539150832 1.120000e-27 135.0
42 TraesCS3B01G354900 chr2A 91.753 97 8 0 1643 1739 71560844 71560748 1.120000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G354900 chr3B 565264645 565271023 6378 False 11780.000000 11780 100.000000 1 6379 1 chr3B.!!$F1 6378
1 TraesCS3B01G354900 chr3D 433132439 433138573 6134 False 2915.333333 6264 93.465333 1 6379 3 chr3D.!!$F1 6378
2 TraesCS3B01G354900 chr3A 571173940 571180267 6327 False 1273.057143 4577 93.275000 1 6379 7 chr3A.!!$F2 6378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 602 1.065418 CACCCAGGCTATTTTCGTCCT 60.065 52.381 0.00 0.0 0.00 3.85 F
1327 1359 0.037326 TTCTGGCTAGAGGTGCAACG 60.037 55.000 0.00 0.0 38.12 4.10 F
1328 1360 0.898326 TCTGGCTAGAGGTGCAACGA 60.898 55.000 0.00 0.0 38.12 3.85 F
2831 2992 0.107703 TAAGACTGCATTCTGCCCCG 60.108 55.000 7.42 0.0 44.23 5.73 F
3005 3166 0.179020 TTGGCAGACTGTGTTCCAGG 60.179 55.000 3.99 0.0 46.06 4.45 F
3473 3748 0.249238 GAGGCTACTCGTGCTGATGG 60.249 60.000 0.00 0.0 33.35 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1803 0.115745 TTCTTCAGTACCCCCTCCGT 59.884 55.000 0.00 0.00 0.00 4.69 R
2193 2318 0.179240 CAAGTCATTGTCGCGTGCTC 60.179 55.000 5.77 0.00 0.00 4.26 R
3020 3181 0.460987 AGGCACGTCTAGCATTGCTC 60.461 55.000 15.81 0.00 40.44 4.26 R
4123 4404 0.317479 ACACTGAGTAAGGTGCCGAC 59.683 55.000 0.00 0.00 36.99 4.79 R
4136 4417 1.000394 TCGGAGCGAATCAAACACTGA 60.000 47.619 0.00 0.00 38.81 3.41 R
5423 5726 0.753867 GGGAACTAGCTAGGTGAGGC 59.246 60.000 24.35 6.19 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.911484 TGTGCAAACAATTTTCCCACC 58.089 42.857 0.00 0.00 0.00 4.61
42 43 1.610624 CCCAGGCGTGAGTGTAAACAT 60.611 52.381 8.24 0.00 0.00 2.71
45 46 1.346395 AGGCGTGAGTGTAAACATGGA 59.654 47.619 0.00 0.00 0.00 3.41
65 66 4.264668 TGGACCAGAGGTTTAGGATAGTGA 60.265 45.833 0.00 0.00 35.25 3.41
154 155 7.094592 GGCTAGCTAATCATTCCCTAATTGTTC 60.095 40.741 15.72 0.00 0.00 3.18
224 230 8.702163 AAGTCTGTTTTTGTTAACCATTTCAG 57.298 30.769 2.48 6.94 0.00 3.02
234 240 6.757237 TGTTAACCATTTCAGCATTCACAAT 58.243 32.000 2.48 0.00 0.00 2.71
241 247 7.148373 ACCATTTCAGCATTCACAATTTTATGC 60.148 33.333 0.00 0.00 42.76 3.14
327 347 8.192110 CCTCAGAACTCCTAAAATCTACTACAC 58.808 40.741 0.00 0.00 0.00 2.90
339 359 6.374417 AATCTACTACACATGTCCTGGTTT 57.626 37.500 0.00 0.00 0.00 3.27
340 360 7.490657 AATCTACTACACATGTCCTGGTTTA 57.509 36.000 0.00 0.00 0.00 2.01
341 361 6.276832 TCTACTACACATGTCCTGGTTTAC 57.723 41.667 0.00 0.00 0.00 2.01
342 362 4.281898 ACTACACATGTCCTGGTTTACC 57.718 45.455 0.00 0.00 0.00 2.85
343 363 3.908103 ACTACACATGTCCTGGTTTACCT 59.092 43.478 0.00 0.00 36.82 3.08
344 364 3.140325 ACACATGTCCTGGTTTACCTG 57.860 47.619 0.00 0.00 36.82 4.00
345 365 1.812571 CACATGTCCTGGTTTACCTGC 59.187 52.381 0.00 0.00 36.82 4.85
346 366 1.705186 ACATGTCCTGGTTTACCTGCT 59.295 47.619 0.00 0.00 36.82 4.24
347 367 2.108250 ACATGTCCTGGTTTACCTGCTT 59.892 45.455 0.00 0.00 36.82 3.91
348 368 3.157087 CATGTCCTGGTTTACCTGCTTT 58.843 45.455 0.00 0.00 36.82 3.51
349 369 4.202524 ACATGTCCTGGTTTACCTGCTTTA 60.203 41.667 0.00 0.00 36.82 1.85
350 370 3.746940 TGTCCTGGTTTACCTGCTTTAC 58.253 45.455 0.00 0.00 36.82 2.01
579 602 1.065418 CACCCAGGCTATTTTCGTCCT 60.065 52.381 0.00 0.00 0.00 3.85
869 893 6.696042 TGGCTATATATAGGTGGCAAAGAA 57.304 37.500 19.19 0.00 0.00 2.52
959 983 5.463724 GTGGATAGATTCTGATTTGGTCGAC 59.536 44.000 7.13 7.13 0.00 4.20
990 1014 1.153628 CGAGGGCGTCCGATCTTTT 60.154 57.895 0.00 0.00 38.33 2.27
1013 1037 1.019673 CCCAAGATGACTGGCAATCG 58.980 55.000 0.00 0.00 0.00 3.34
1067 1091 7.291411 TGTTTCCCTCATCTCTAATACTAGC 57.709 40.000 0.00 0.00 0.00 3.42
1239 1271 3.356529 CAGAAGTGCTACCTGGGATTT 57.643 47.619 0.00 0.00 0.00 2.17
1241 1273 4.082125 CAGAAGTGCTACCTGGGATTTTT 58.918 43.478 0.00 0.00 0.00 1.94
1327 1359 0.037326 TTCTGGCTAGAGGTGCAACG 60.037 55.000 0.00 0.00 38.12 4.10
1328 1360 0.898326 TCTGGCTAGAGGTGCAACGA 60.898 55.000 0.00 0.00 38.12 3.85
1504 1579 7.902920 ATCATAGCCCATTTGTTGTTCTAAT 57.097 32.000 0.00 0.00 0.00 1.73
1510 1586 6.719370 AGCCCATTTGTTGTTCTAATAGTTCA 59.281 34.615 0.00 0.00 0.00 3.18
1548 1626 5.777449 TCCATGGGAGACTTTACAGATCTA 58.223 41.667 13.02 0.00 0.00 1.98
1551 1629 6.778069 CCATGGGAGACTTTACAGATCTAGTA 59.222 42.308 2.85 0.00 0.00 1.82
1552 1630 7.040062 CCATGGGAGACTTTACAGATCTAGTAG 60.040 44.444 2.85 0.00 0.00 2.57
1554 1632 6.829298 TGGGAGACTTTACAGATCTAGTAGTG 59.171 42.308 0.00 1.18 0.00 2.74
1656 1734 8.801715 CAATTGTTTGCCCATATATTGTACTC 57.198 34.615 0.00 0.00 0.00 2.59
1657 1735 6.952773 TTGTTTGCCCATATATTGTACTCC 57.047 37.500 0.00 0.00 0.00 3.85
1658 1736 5.381757 TGTTTGCCCATATATTGTACTCCC 58.618 41.667 0.00 0.00 0.00 4.30
1659 1737 5.133660 TGTTTGCCCATATATTGTACTCCCT 59.866 40.000 0.00 0.00 0.00 4.20
1660 1738 5.499004 TTGCCCATATATTGTACTCCCTC 57.501 43.478 0.00 0.00 0.00 4.30
1661 1739 4.763355 TGCCCATATATTGTACTCCCTCT 58.237 43.478 0.00 0.00 0.00 3.69
1662 1740 4.532126 TGCCCATATATTGTACTCCCTCTG 59.468 45.833 0.00 0.00 0.00 3.35
1663 1741 4.532521 GCCCATATATTGTACTCCCTCTGT 59.467 45.833 0.00 0.00 0.00 3.41
1664 1742 5.337652 GCCCATATATTGTACTCCCTCTGTC 60.338 48.000 0.00 0.00 0.00 3.51
1665 1743 6.019748 CCCATATATTGTACTCCCTCTGTCT 58.980 44.000 0.00 0.00 0.00 3.41
1666 1744 6.153680 CCCATATATTGTACTCCCTCTGTCTC 59.846 46.154 0.00 0.00 0.00 3.36
1667 1745 6.721668 CCATATATTGTACTCCCTCTGTCTCA 59.278 42.308 0.00 0.00 0.00 3.27
1668 1746 7.233553 CCATATATTGTACTCCCTCTGTCTCAA 59.766 40.741 0.00 0.00 0.00 3.02
1669 1747 8.642432 CATATATTGTACTCCCTCTGTCTCAAA 58.358 37.037 0.00 0.00 0.00 2.69
1670 1748 5.825593 ATTGTACTCCCTCTGTCTCAAAA 57.174 39.130 0.00 0.00 0.00 2.44
1671 1749 5.825593 TTGTACTCCCTCTGTCTCAAAAT 57.174 39.130 0.00 0.00 0.00 1.82
1672 1750 6.928348 TTGTACTCCCTCTGTCTCAAAATA 57.072 37.500 0.00 0.00 0.00 1.40
1673 1751 7.496346 TTGTACTCCCTCTGTCTCAAAATAT 57.504 36.000 0.00 0.00 0.00 1.28
1674 1752 8.603898 TTGTACTCCCTCTGTCTCAAAATATA 57.396 34.615 0.00 0.00 0.00 0.86
1675 1753 8.603898 TGTACTCCCTCTGTCTCAAAATATAA 57.396 34.615 0.00 0.00 0.00 0.98
1676 1754 8.696374 TGTACTCCCTCTGTCTCAAAATATAAG 58.304 37.037 0.00 0.00 0.00 1.73
1677 1755 7.979786 ACTCCCTCTGTCTCAAAATATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
1678 1756 8.380742 ACTCCCTCTGTCTCAAAATATAAGAA 57.619 34.615 0.00 0.00 0.00 2.52
1679 1757 8.261522 ACTCCCTCTGTCTCAAAATATAAGAAC 58.738 37.037 0.00 0.00 0.00 3.01
1680 1758 7.265673 TCCCTCTGTCTCAAAATATAAGAACG 58.734 38.462 0.00 0.00 0.00 3.95
1681 1759 7.042335 CCCTCTGTCTCAAAATATAAGAACGT 58.958 38.462 0.00 0.00 0.00 3.99
1682 1760 7.549488 CCCTCTGTCTCAAAATATAAGAACGTT 59.451 37.037 0.00 0.00 0.00 3.99
1683 1761 8.936864 CCTCTGTCTCAAAATATAAGAACGTTT 58.063 33.333 0.46 0.00 0.00 3.60
1700 1778 9.925268 AAGAACGTTTTTAACACTACACTAATG 57.075 29.630 0.46 0.00 0.00 1.90
1701 1779 9.101655 AGAACGTTTTTAACACTACACTAATGT 57.898 29.630 0.46 0.00 43.30 2.71
1702 1780 9.361712 GAACGTTTTTAACACTACACTAATGTC 57.638 33.333 0.46 0.00 40.48 3.06
1703 1781 8.422973 ACGTTTTTAACACTACACTAATGTCA 57.577 30.769 0.00 0.00 40.48 3.58
1704 1782 8.881743 ACGTTTTTAACACTACACTAATGTCAA 58.118 29.630 0.00 0.00 40.48 3.18
1705 1783 9.705471 CGTTTTTAACACTACACTAATGTCAAA 57.295 29.630 0.00 0.00 40.48 2.69
1710 1788 7.875327 AACACTACACTAATGTCAAAAAGGT 57.125 32.000 0.00 0.00 40.48 3.50
1711 1789 7.875327 ACACTACACTAATGTCAAAAAGGTT 57.125 32.000 0.00 0.00 40.48 3.50
1712 1790 7.927048 ACACTACACTAATGTCAAAAAGGTTC 58.073 34.615 0.00 0.00 40.48 3.62
1713 1791 7.773690 ACACTACACTAATGTCAAAAAGGTTCT 59.226 33.333 0.00 0.00 40.48 3.01
1714 1792 8.621286 CACTACACTAATGTCAAAAAGGTTCTT 58.379 33.333 0.00 0.00 40.48 2.52
1715 1793 9.841295 ACTACACTAATGTCAAAAAGGTTCTTA 57.159 29.630 0.00 0.00 40.48 2.10
1730 1808 9.765795 AAAAGGTTCTTATATTATGAGACGGAG 57.234 33.333 0.00 0.00 0.00 4.63
1731 1809 7.469537 AGGTTCTTATATTATGAGACGGAGG 57.530 40.000 0.00 0.00 0.00 4.30
1732 1810 6.437793 AGGTTCTTATATTATGAGACGGAGGG 59.562 42.308 0.00 0.00 0.00 4.30
1733 1811 6.351117 GGTTCTTATATTATGAGACGGAGGGG 60.351 46.154 0.00 0.00 0.00 4.79
1799 1920 1.503818 TTCCTTGCTTCGTTCACCGC 61.504 55.000 0.00 0.00 36.19 5.68
1800 1921 1.961277 CCTTGCTTCGTTCACCGCT 60.961 57.895 0.00 0.00 36.19 5.52
1832 1953 5.163913 CGAGCCAAAGTCTACTTCATTCTTG 60.164 44.000 0.00 0.00 34.61 3.02
1833 1954 5.006386 AGCCAAAGTCTACTTCATTCTTGG 58.994 41.667 0.00 0.78 34.61 3.61
1834 1955 4.762251 GCCAAAGTCTACTTCATTCTTGGT 59.238 41.667 9.56 0.00 34.61 3.67
1884 2005 4.143543 GGTGTGGGTAGATACTAGAGTCC 58.856 52.174 0.00 0.00 0.00 3.85
1982 2103 1.807142 GCCCACTTGCTCTGTTAAGAC 59.193 52.381 0.00 0.00 0.00 3.01
2051 2172 1.470285 CCGAGGCAATTCAAAGCATGG 60.470 52.381 0.00 0.00 0.00 3.66
2233 2358 3.684305 TGGACATATCACAAAGCAACTCG 59.316 43.478 0.00 0.00 0.00 4.18
2257 2382 4.161295 CAAGATGGCGCCGAGGGA 62.161 66.667 23.90 3.26 0.00 4.20
2260 2385 3.928779 GATGGCGCCGAGGGATCA 61.929 66.667 23.90 0.49 0.00 2.92
2261 2386 4.241555 ATGGCGCCGAGGGATCAC 62.242 66.667 23.90 0.00 0.00 3.06
2325 2450 2.290896 CCCAAGTGCTTGAAGGGTATGA 60.291 50.000 12.99 0.00 42.93 2.15
2346 2471 6.834168 TGATTCCCACCAAAGAATTTAGTC 57.166 37.500 0.00 0.00 35.03 2.59
2458 2586 1.402896 GGATGGGGATGAGCGAGTCA 61.403 60.000 0.00 0.00 40.38 3.41
2525 2653 4.404073 AGAGGACACATATGAAGGTCTGTC 59.596 45.833 10.38 11.09 0.00 3.51
2540 2668 5.751586 AGGTCTGTCCTAAAACACTTTTCA 58.248 37.500 0.00 0.00 46.10 2.69
2541 2669 6.184789 AGGTCTGTCCTAAAACACTTTTCAA 58.815 36.000 0.00 0.00 46.10 2.69
2542 2670 6.095021 AGGTCTGTCCTAAAACACTTTTCAAC 59.905 38.462 0.00 0.00 46.10 3.18
2543 2671 6.095021 GGTCTGTCCTAAAACACTTTTCAACT 59.905 38.462 0.00 0.00 34.19 3.16
2546 2674 7.175990 TCTGTCCTAAAACACTTTTCAACTTGT 59.824 33.333 0.00 0.00 34.19 3.16
2583 2711 6.484643 ACACAGTTGGTCAATATATGCATCTC 59.515 38.462 0.19 0.00 0.00 2.75
2622 2783 8.972127 ACTACTGTACATTGTCATATCTTCACT 58.028 33.333 0.00 0.00 0.00 3.41
2625 2786 8.535335 ACTGTACATTGTCATATCTTCACTTCT 58.465 33.333 0.00 0.00 0.00 2.85
2630 2791 9.950496 ACATTGTCATATCTTCACTTCTTTAGT 57.050 29.630 0.00 0.00 37.68 2.24
2676 2837 3.944015 AGTAGGATCTGACATGCAAAAGC 59.056 43.478 0.00 0.00 0.00 3.51
2681 2842 4.439289 GGATCTGACATGCAAAAGCCTTAC 60.439 45.833 0.00 0.00 0.00 2.34
2702 2863 2.273557 GGCGGCAATCGTTCTAACTAA 58.726 47.619 3.07 0.00 41.72 2.24
2752 2913 5.544176 TGTGACTGGAAAAGAAGAGACCTAT 59.456 40.000 0.00 0.00 0.00 2.57
2819 2980 2.305405 GCATCGGCAGCTAAGACTG 58.695 57.895 0.00 0.00 40.72 3.51
2831 2992 0.107703 TAAGACTGCATTCTGCCCCG 60.108 55.000 7.42 0.00 44.23 5.73
2896 3057 3.010584 AGAGGCTAAGGCAGGAAAATGAA 59.989 43.478 0.00 0.00 40.87 2.57
2897 3058 3.956848 GAGGCTAAGGCAGGAAAATGAAT 59.043 43.478 0.00 0.00 40.87 2.57
2898 3059 3.956848 AGGCTAAGGCAGGAAAATGAATC 59.043 43.478 0.00 0.00 40.87 2.52
2924 3085 5.764131 TGAAGCAACAGGTAAATAAAACCG 58.236 37.500 0.00 0.00 42.15 4.44
2925 3086 5.531659 TGAAGCAACAGGTAAATAAAACCGA 59.468 36.000 0.00 0.00 42.15 4.69
2926 3087 5.366829 AGCAACAGGTAAATAAAACCGAC 57.633 39.130 0.00 0.00 42.15 4.79
2973 3134 5.574891 TCAATCAGCTCAACTCTCTCTAC 57.425 43.478 0.00 0.00 0.00 2.59
2994 3155 4.432712 ACACTTTGAAACATTTGGCAGAC 58.567 39.130 0.00 0.00 0.00 3.51
2996 3157 4.505191 CACTTTGAAACATTTGGCAGACTG 59.495 41.667 0.00 0.00 0.00 3.51
3005 3166 0.179020 TTGGCAGACTGTGTTCCAGG 60.179 55.000 3.99 0.00 46.06 4.45
3020 3181 7.103641 TGTGTTCCAGGCTTTAGTATCTTAAG 58.896 38.462 0.00 0.00 0.00 1.85
3036 3202 4.424626 TCTTAAGAGCAATGCTAGACGTG 58.575 43.478 8.12 0.00 39.88 4.49
3042 3208 1.795286 GCAATGCTAGACGTGCCTATC 59.205 52.381 0.00 0.00 0.00 2.08
3069 3341 9.974980 TTTGAAGTAACTTTGGTGGAATTATTC 57.025 29.630 0.00 0.00 0.00 1.75
3133 3405 5.993441 TCGAGTTAATTTTCCGTCCTCTTTT 59.007 36.000 0.00 0.00 0.00 2.27
3178 3450 6.467723 ACACTGATGTTGTATTCTTCGTTC 57.532 37.500 0.00 0.00 34.46 3.95
3260 3532 4.909695 TGACCCATCCACAGAGAATATCAT 59.090 41.667 0.00 0.00 0.00 2.45
3270 3542 7.126268 TCCACAGAGAATATCATTGGAAGAGAA 59.874 37.037 0.00 0.00 37.88 2.87
3337 3609 1.343465 AGTTTGTCGTCCTGTCCGAAT 59.657 47.619 0.00 0.00 35.89 3.34
3376 3648 2.757077 CTGTCCCTGGTGGTTCCC 59.243 66.667 0.00 0.00 34.77 3.97
3421 3693 0.318869 TGCTCAAACATTTGGCGCAG 60.319 50.000 10.83 0.00 38.80 5.18
3429 3701 2.998279 ATTTGGCGCAGGAAGCAGC 61.998 57.895 10.83 0.00 46.13 5.25
3437 3709 1.804326 CAGGAAGCAGCGCAAATGC 60.804 57.895 11.47 11.68 44.18 3.56
3438 3710 2.507769 GGAAGCAGCGCAAATGCC 60.508 61.111 15.62 4.78 44.97 4.40
3473 3748 0.249238 GAGGCTACTCGTGCTGATGG 60.249 60.000 0.00 0.00 33.35 3.51
3474 3749 0.972983 AGGCTACTCGTGCTGATGGT 60.973 55.000 0.00 0.00 0.00 3.55
3519 3794 6.763355 ACAGATTGTGGACTATATCATGGAC 58.237 40.000 0.00 0.00 0.00 4.02
3536 3811 5.189736 TCATGGACTCTGTAAGTTGCCTATT 59.810 40.000 0.00 0.00 38.74 1.73
3537 3812 5.499004 TGGACTCTGTAAGTTGCCTATTT 57.501 39.130 0.00 0.00 38.74 1.40
3538 3813 6.614694 TGGACTCTGTAAGTTGCCTATTTA 57.385 37.500 0.00 0.00 38.74 1.40
3539 3814 7.011499 TGGACTCTGTAAGTTGCCTATTTAA 57.989 36.000 0.00 0.00 38.74 1.52
3540 3815 7.630082 TGGACTCTGTAAGTTGCCTATTTAAT 58.370 34.615 0.00 0.00 38.74 1.40
3642 3918 2.088104 TCTGTCCTGGACTTGTGACT 57.912 50.000 26.03 0.00 33.15 3.41
3734 4010 9.331282 GGTATGTATGCTTTTCTTTCTCTATGT 57.669 33.333 0.00 0.00 0.00 2.29
3769 4045 5.452255 AGATGTTTGGCATGAGTATCCAAT 58.548 37.500 0.00 0.00 39.36 3.16
3770 4046 6.604171 AGATGTTTGGCATGAGTATCCAATA 58.396 36.000 0.00 0.00 39.36 1.90
3828 4104 5.011943 AGCATATCCTGAGGAGAAATCAGTC 59.988 44.000 7.50 0.00 42.18 3.51
3865 4142 3.553105 CAGTTTGTTTGCCTTCTTTCTGC 59.447 43.478 0.00 0.00 0.00 4.26
3883 4160 6.389830 TTCTGCTTGCTTGAAAACAATAGA 57.610 33.333 0.00 0.00 0.00 1.98
3918 4195 1.195442 TGTTCCCATCGCCACTGGTA 61.195 55.000 0.00 0.00 31.44 3.25
3924 4201 0.532862 CATCGCCACTGGTACCATCC 60.533 60.000 16.75 3.21 0.00 3.51
4042 4319 1.275856 GCCACAAAATGCCATCAGGAA 59.724 47.619 0.00 0.00 36.89 3.36
4044 4321 3.788937 CCACAAAATGCCATCAGGAATC 58.211 45.455 0.00 0.00 28.84 2.52
4048 4325 5.127519 CACAAAATGCCATCAGGAATCCTAA 59.872 40.000 0.00 0.00 28.84 2.69
4136 4417 3.031736 AGTATGATGTCGGCACCTTACT 58.968 45.455 4.16 4.16 0.00 2.24
4210 4491 4.578871 TGTCCAAGTGAATGATACTGGTG 58.421 43.478 0.00 0.00 0.00 4.17
4278 4559 2.434884 CGCTGGGTGTCGAGCATT 60.435 61.111 0.00 0.00 43.63 3.56
4339 4620 1.005867 AAAAGCGCCTCGAACGGTA 60.006 52.632 2.29 0.00 40.92 4.02
4406 4687 6.147821 ACTGAACATATCCTGAGAAACAAACG 59.852 38.462 0.00 0.00 0.00 3.60
4535 4816 1.451927 GCGGATGGACCATTCTGCA 60.452 57.895 22.60 0.00 38.90 4.41
4569 4850 2.166459 GGAAGACGACATCAGGATCACA 59.834 50.000 0.00 0.00 0.00 3.58
4617 4898 4.936823 GCCGTCGTGTCCGTGTGT 62.937 66.667 0.00 0.00 35.01 3.72
4743 5024 0.465460 CTCCTCTCTCAGCGGCTAGT 60.465 60.000 0.26 0.00 0.00 2.57
4967 5263 5.117745 TCGACTAACTCGAGTATACATACGC 59.882 44.000 20.39 1.17 46.75 4.42
5076 5372 1.171308 CTGCCCAGTCAACATCCAAG 58.829 55.000 0.00 0.00 0.00 3.61
5103 5399 0.964700 CGAGATCATGAGCCCTAGCA 59.035 55.000 7.49 0.00 43.56 3.49
5212 5508 1.569479 GGAGCAACTCTTGTGACCGC 61.569 60.000 0.00 0.00 0.00 5.68
5401 5697 5.665812 AGAATGTACCCAGGTAATTCTGCTA 59.334 40.000 21.05 0.00 37.24 3.49
5402 5698 5.968676 ATGTACCCAGGTAATTCTGCTAA 57.031 39.130 0.00 0.00 33.64 3.09
5403 5699 5.968676 TGTACCCAGGTAATTCTGCTAAT 57.031 39.130 0.00 0.00 33.64 1.73
5423 5726 6.539103 GCTAATTCCTGTTAAACTCCACTAGG 59.461 42.308 0.00 0.00 0.00 3.02
5443 5746 1.965318 GCCTCACCTAGCTAGTTCCCA 60.965 57.143 19.31 0.00 0.00 4.37
5452 5755 4.816925 CCTAGCTAGTTCCCAGTAATTTGC 59.183 45.833 19.31 0.00 0.00 3.68
5506 5810 1.817099 GGAGAAGCGATGCTGGTGG 60.817 63.158 0.00 0.00 39.62 4.61
5526 5830 3.565482 TGGAAGTCTGTCAAACTGCATTC 59.435 43.478 0.00 0.00 0.00 2.67
5578 5882 4.506654 CCCTCCGTTTCATAATAAGTGTCG 59.493 45.833 0.00 0.00 0.00 4.35
5590 5894 8.928733 TCATAATAAGTGTCGTGGTTTTAGTTC 58.071 33.333 0.00 0.00 0.00 3.01
5690 5996 7.762382 ACTTGCTATTTACAATAAGAACCTGC 58.238 34.615 0.00 0.00 0.00 4.85
5733 6039 9.796120 CTAGACTTGTCTTTATCGAGAAAAGAT 57.204 33.333 21.75 10.92 41.55 2.40
5744 6050 4.480115 TCGAGAAAAGATCCTGGCCTATA 58.520 43.478 3.32 0.00 0.00 1.31
5752 6058 4.219115 AGATCCTGGCCTATATATGGTCG 58.781 47.826 3.32 0.00 30.50 4.79
5817 6123 9.528018 AAACTTGTGTTGTAATAATGGTTCAAG 57.472 29.630 0.00 0.00 36.39 3.02
5836 6142 6.431198 TCAAGAACTAAACCTGTTGTTGTC 57.569 37.500 13.41 0.00 44.07 3.18
5839 6145 4.569564 AGAACTAAACCTGTTGTTGTCGTC 59.430 41.667 0.00 0.00 37.23 4.20
5842 6148 1.283736 AACCTGTTGTTGTCGTCGTC 58.716 50.000 0.00 0.00 35.31 4.20
5845 6166 0.497265 CTGTTGTTGTCGTCGTCGTC 59.503 55.000 1.33 0.00 38.33 4.20
5990 6311 5.534207 TGGTTCTCTTTCGGTTACTACAA 57.466 39.130 0.00 0.00 0.00 2.41
5997 6318 7.945134 TCTCTTTCGGTTACTACAAACTAAGT 58.055 34.615 0.00 0.00 0.00 2.24
6059 6380 6.542852 CACAATAGCACATTGTTACTACCAC 58.457 40.000 12.53 0.00 39.94 4.16
6077 6398 4.321718 ACCACTGCATGCATATCAGATAC 58.678 43.478 22.97 1.59 0.00 2.24
6078 6399 4.041321 ACCACTGCATGCATATCAGATACT 59.959 41.667 22.97 8.44 0.00 2.12
6079 6400 4.630505 CCACTGCATGCATATCAGATACTC 59.369 45.833 22.97 0.00 0.00 2.59
6080 6401 4.630505 CACTGCATGCATATCAGATACTCC 59.369 45.833 22.97 0.00 0.00 3.85
6081 6402 4.190001 CTGCATGCATATCAGATACTCCC 58.810 47.826 22.97 0.00 0.00 4.30
6082 6403 3.842436 TGCATGCATATCAGATACTCCCT 59.158 43.478 18.46 0.00 0.00 4.20
6083 6404 4.081254 TGCATGCATATCAGATACTCCCTC 60.081 45.833 18.46 0.00 0.00 4.30
6084 6405 4.161942 GCATGCATATCAGATACTCCCTCT 59.838 45.833 14.21 0.00 0.00 3.69
6085 6406 5.662456 CATGCATATCAGATACTCCCTCTG 58.338 45.833 0.00 0.00 41.23 3.35
6086 6407 4.745351 TGCATATCAGATACTCCCTCTGT 58.255 43.478 0.00 0.00 40.79 3.41
6087 6408 5.150715 TGCATATCAGATACTCCCTCTGTT 58.849 41.667 0.00 0.00 40.79 3.16
6088 6409 5.244851 TGCATATCAGATACTCCCTCTGTTC 59.755 44.000 0.00 0.00 40.79 3.18
6089 6410 5.337169 GCATATCAGATACTCCCTCTGTTCC 60.337 48.000 0.00 0.00 40.79 3.62
6090 6411 4.551215 ATCAGATACTCCCTCTGTTCCT 57.449 45.455 0.71 0.00 40.79 3.36
6091 6412 5.671463 ATCAGATACTCCCTCTGTTCCTA 57.329 43.478 0.71 0.00 40.79 2.94
6092 6413 5.467668 TCAGATACTCCCTCTGTTCCTAA 57.532 43.478 0.71 0.00 40.79 2.69
6093 6414 5.838955 TCAGATACTCCCTCTGTTCCTAAA 58.161 41.667 0.71 0.00 40.79 1.85
6094 6415 6.444704 TCAGATACTCCCTCTGTTCCTAAAT 58.555 40.000 0.71 0.00 40.79 1.40
6095 6416 7.592736 TCAGATACTCCCTCTGTTCCTAAATA 58.407 38.462 0.71 0.00 40.79 1.40
6096 6417 8.235230 TCAGATACTCCCTCTGTTCCTAAATAT 58.765 37.037 0.71 0.00 40.79 1.28
6097 6418 8.875168 CAGATACTCCCTCTGTTCCTAAATATT 58.125 37.037 0.00 0.00 36.26 1.28
6098 6419 9.453830 AGATACTCCCTCTGTTCCTAAATATTT 57.546 33.333 5.89 5.89 0.00 1.40
6099 6420 9.495572 GATACTCCCTCTGTTCCTAAATATTTG 57.504 37.037 11.05 1.40 0.00 2.32
6100 6421 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
6101 6422 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
6102 6423 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
6103 6424 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
6104 6425 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
6105 6426 9.025041 CCCTCTGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
6121 6442 9.985730 ATTTGTCTTTTTAGAGATTCAAATGCA 57.014 25.926 0.00 0.00 34.10 3.96
6122 6443 8.801715 TTGTCTTTTTAGAGATTCAAATGCAC 57.198 30.769 0.00 0.00 0.00 4.57
6123 6444 8.169977 TGTCTTTTTAGAGATTCAAATGCACT 57.830 30.769 0.00 0.00 0.00 4.40
6124 6445 9.283768 TGTCTTTTTAGAGATTCAAATGCACTA 57.716 29.630 0.00 0.00 0.00 2.74
6129 6450 8.791327 TTTAGAGATTCAAATGCACTATCACA 57.209 30.769 0.00 0.00 0.00 3.58
6130 6451 8.969260 TTAGAGATTCAAATGCACTATCACAT 57.031 30.769 0.00 0.00 0.00 3.21
6132 6453 8.375608 AGAGATTCAAATGCACTATCACATAC 57.624 34.615 0.00 0.00 0.00 2.39
6133 6454 7.170489 AGAGATTCAAATGCACTATCACATACG 59.830 37.037 0.00 0.00 0.00 3.06
6134 6455 5.733226 TTCAAATGCACTATCACATACGG 57.267 39.130 0.00 0.00 0.00 4.02
6135 6456 5.017294 TCAAATGCACTATCACATACGGA 57.983 39.130 0.00 0.00 0.00 4.69
6136 6457 5.610398 TCAAATGCACTATCACATACGGAT 58.390 37.500 0.00 0.00 0.00 4.18
6137 6458 5.466393 TCAAATGCACTATCACATACGGATG 59.534 40.000 5.94 5.94 39.16 3.51
6139 6460 5.722021 ATGCACTATCACATACGGATGTA 57.278 39.130 14.23 2.61 44.82 2.29
6140 6461 5.722021 TGCACTATCACATACGGATGTAT 57.278 39.130 14.23 10.02 44.82 2.29
6141 6462 6.827586 TGCACTATCACATACGGATGTATA 57.172 37.500 14.23 10.59 44.82 1.47
6142 6463 7.404671 TGCACTATCACATACGGATGTATAT 57.595 36.000 14.23 12.50 44.82 0.86
6143 6464 8.514330 TGCACTATCACATACGGATGTATATA 57.486 34.615 14.23 12.96 44.82 0.86
6144 6465 8.621286 TGCACTATCACATACGGATGTATATAG 58.379 37.037 26.27 26.27 44.82 1.31
6145 6466 8.837389 GCACTATCACATACGGATGTATATAGA 58.163 37.037 30.73 19.35 44.82 1.98
6147 6468 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
6175 6496 7.869016 TTTAAGTGTAGATTCACTCAGTTCG 57.131 36.000 0.00 0.00 46.25 3.95
6176 6497 3.839293 AGTGTAGATTCACTCAGTTCGC 58.161 45.455 0.00 0.00 44.07 4.70
6177 6498 3.508012 AGTGTAGATTCACTCAGTTCGCT 59.492 43.478 0.00 0.00 44.07 4.93
6178 6499 3.854809 GTGTAGATTCACTCAGTTCGCTC 59.145 47.826 0.00 0.00 35.68 5.03
6179 6500 2.663826 AGATTCACTCAGTTCGCTCC 57.336 50.000 0.00 0.00 0.00 4.70
6180 6501 1.135257 AGATTCACTCAGTTCGCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
6181 6502 0.603569 ATTCACTCAGTTCGCTCCGT 59.396 50.000 0.00 0.00 0.00 4.69
6182 6503 1.241165 TTCACTCAGTTCGCTCCGTA 58.759 50.000 0.00 0.00 0.00 4.02
6183 6504 1.460504 TCACTCAGTTCGCTCCGTAT 58.539 50.000 0.00 0.00 0.00 3.06
6184 6505 1.132453 TCACTCAGTTCGCTCCGTATG 59.868 52.381 0.00 0.00 0.00 2.39
6185 6506 1.135373 CACTCAGTTCGCTCCGTATGT 60.135 52.381 0.00 0.00 0.00 2.29
6186 6507 2.096980 CACTCAGTTCGCTCCGTATGTA 59.903 50.000 0.00 0.00 0.00 2.29
6187 6508 2.355132 ACTCAGTTCGCTCCGTATGTAG 59.645 50.000 0.00 0.00 0.00 2.74
6188 6509 2.355132 CTCAGTTCGCTCCGTATGTAGT 59.645 50.000 0.00 0.00 0.00 2.73
6189 6510 2.353889 TCAGTTCGCTCCGTATGTAGTC 59.646 50.000 0.00 0.00 0.00 2.59
6190 6511 2.096980 CAGTTCGCTCCGTATGTAGTCA 59.903 50.000 0.00 0.00 0.00 3.41
6191 6512 2.097142 AGTTCGCTCCGTATGTAGTCAC 59.903 50.000 0.00 0.00 0.00 3.67
6192 6513 2.034104 TCGCTCCGTATGTAGTCACT 57.966 50.000 0.00 0.00 0.00 3.41
6193 6514 2.362736 TCGCTCCGTATGTAGTCACTT 58.637 47.619 0.00 0.00 0.00 3.16
6194 6515 2.096980 TCGCTCCGTATGTAGTCACTTG 59.903 50.000 0.00 0.00 0.00 3.16
6195 6516 2.159421 CGCTCCGTATGTAGTCACTTGT 60.159 50.000 0.00 0.00 0.00 3.16
6196 6517 3.672511 CGCTCCGTATGTAGTCACTTGTT 60.673 47.826 0.00 0.00 0.00 2.83
6197 6518 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
6198 6519 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
6199 6520 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
6200 6521 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
6201 6522 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
6202 6523 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
6203 6524 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
6204 6525 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
6205 6526 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
6206 6527 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
6207 6528 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
6208 6529 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
6209 6530 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
6210 6531 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
6211 6532 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
6212 6533 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
6213 6534 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
6214 6535 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
6215 6536 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
6216 6537 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
6232 6553 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
6233 6554 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
6234 6555 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
6235 6556 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
6236 6557 7.129504 AGACAAATATTTAGGAATGGAGGGAGT 59.870 37.037 0.00 0.00 0.00 3.85
6237 6558 8.344939 ACAAATATTTAGGAATGGAGGGAGTA 57.655 34.615 0.00 0.00 0.00 2.59
6238 6559 8.787818 ACAAATATTTAGGAATGGAGGGAGTAA 58.212 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.055849 GCCTGGGTGGGAAAATTGTT 58.944 50.000 0.00 0.00 36.00 2.83
23 24 1.464608 CATGTTTACACTCACGCCTGG 59.535 52.381 0.00 0.00 0.00 4.45
42 43 4.030913 CACTATCCTAAACCTCTGGTCCA 58.969 47.826 0.00 0.00 33.12 4.02
45 46 6.272558 ACTTTTCACTATCCTAAACCTCTGGT 59.727 38.462 0.00 0.00 37.65 4.00
113 114 2.057922 CTAGCCCCACTTCACCCATAT 58.942 52.381 0.00 0.00 0.00 1.78
206 207 7.550551 TGTGAATGCTGAAATGGTTAACAAAAA 59.449 29.630 8.10 0.00 0.00 1.94
224 230 5.760193 TCAACGCATAAAATTGTGAATGC 57.240 34.783 0.00 0.00 41.00 3.56
234 240 5.010112 TCCATTTGACCTTCAACGCATAAAA 59.990 36.000 0.00 0.00 35.89 1.52
241 247 4.023279 TGAACATCCATTTGACCTTCAACG 60.023 41.667 0.00 0.00 35.89 4.10
327 347 2.496899 AGCAGGTAAACCAGGACATG 57.503 50.000 1.26 0.00 38.89 3.21
339 359 6.429521 ACAAAAGGACTAGTAAAGCAGGTA 57.570 37.500 0.00 0.00 0.00 3.08
340 360 5.306114 ACAAAAGGACTAGTAAAGCAGGT 57.694 39.130 0.00 0.00 0.00 4.00
341 361 6.438763 CAAACAAAAGGACTAGTAAAGCAGG 58.561 40.000 0.00 0.00 0.00 4.85
342 362 6.438763 CCAAACAAAAGGACTAGTAAAGCAG 58.561 40.000 0.00 0.00 0.00 4.24
343 363 5.300792 CCCAAACAAAAGGACTAGTAAAGCA 59.699 40.000 0.00 0.00 0.00 3.91
344 364 5.301045 ACCCAAACAAAAGGACTAGTAAAGC 59.699 40.000 0.00 0.00 0.00 3.51
345 365 6.544564 TGACCCAAACAAAAGGACTAGTAAAG 59.455 38.462 0.00 0.00 0.00 1.85
346 366 6.424883 TGACCCAAACAAAAGGACTAGTAAA 58.575 36.000 0.00 0.00 0.00 2.01
347 367 6.003859 TGACCCAAACAAAAGGACTAGTAA 57.996 37.500 0.00 0.00 0.00 2.24
348 368 5.633655 TGACCCAAACAAAAGGACTAGTA 57.366 39.130 0.00 0.00 0.00 1.82
349 369 4.513406 TGACCCAAACAAAAGGACTAGT 57.487 40.909 0.00 0.00 0.00 2.57
350 370 7.703058 AATATGACCCAAACAAAAGGACTAG 57.297 36.000 0.00 0.00 0.00 2.57
471 492 8.687824 ACTAGCAAAATGTTAATGCATGTTAC 57.312 30.769 0.00 0.00 42.45 2.50
472 493 8.518702 TGACTAGCAAAATGTTAATGCATGTTA 58.481 29.630 0.00 0.00 42.45 2.41
652 675 8.510243 TGCATGCGATATAATATGAGGAAAAT 57.490 30.769 14.09 0.00 0.00 1.82
819 842 2.916661 GCCTTACCCCTGGCCTAC 59.083 66.667 3.32 0.00 43.11 3.18
869 893 1.960689 CCGATGTGTTGTTTCCCCTTT 59.039 47.619 0.00 0.00 0.00 3.11
959 983 1.372087 GCCCTCGCCAAGTTGATCTG 61.372 60.000 3.87 0.00 0.00 2.90
990 1014 1.300963 GCCAGTCATCTTGGGCTCA 59.699 57.895 0.00 0.00 43.09 4.26
1013 1037 0.391263 CTTTCTCCTACGCCCACCAC 60.391 60.000 0.00 0.00 0.00 4.16
1067 1091 3.655276 AGCATGCAAGAAAACTTCCAG 57.345 42.857 21.98 0.00 0.00 3.86
1153 1185 7.867921 TCCTAAGAAATTCAAGCCCTTATGTA 58.132 34.615 0.00 0.00 0.00 2.29
1154 1186 6.731467 TCCTAAGAAATTCAAGCCCTTATGT 58.269 36.000 0.00 0.00 0.00 2.29
1155 1187 7.056635 TCTCCTAAGAAATTCAAGCCCTTATG 58.943 38.462 0.00 0.00 0.00 1.90
1156 1188 7.213178 TCTCCTAAGAAATTCAAGCCCTTAT 57.787 36.000 0.00 0.00 0.00 1.73
1157 1189 6.636454 TCTCCTAAGAAATTCAAGCCCTTA 57.364 37.500 0.00 0.00 0.00 2.69
1158 1190 5.520748 TCTCCTAAGAAATTCAAGCCCTT 57.479 39.130 0.00 0.00 0.00 3.95
1159 1191 5.044550 ACATCTCCTAAGAAATTCAAGCCCT 60.045 40.000 0.00 0.00 34.49 5.19
1160 1192 5.196695 ACATCTCCTAAGAAATTCAAGCCC 58.803 41.667 0.00 0.00 34.49 5.19
1309 1341 0.898326 TCGTTGCACCTCTAGCCAGA 60.898 55.000 0.00 0.00 0.00 3.86
1339 1413 4.644103 AACAGATGATGGTATTTGCTGC 57.356 40.909 0.00 0.00 0.00 5.25
1451 1526 7.443575 CCTCGATGACTTGATCAAGGAATTTAT 59.556 37.037 33.11 17.60 41.93 1.40
1466 1541 4.021016 GGGCTATGATAACCTCGATGACTT 60.021 45.833 0.00 0.00 0.00 3.01
1504 1579 9.859427 CATGGAAAAGCTTTTGATTATGAACTA 57.141 29.630 28.42 9.27 0.00 2.24
1510 1586 6.669154 TCTCCCATGGAAAAGCTTTTGATTAT 59.331 34.615 28.42 13.50 0.00 1.28
1548 1626 3.521560 CATTCCGTGCATGTACACTACT 58.478 45.455 14.55 0.00 38.45 2.57
1551 1629 1.277842 TCCATTCCGTGCATGTACACT 59.722 47.619 14.55 0.00 38.45 3.55
1552 1630 1.732941 TCCATTCCGTGCATGTACAC 58.267 50.000 14.55 4.15 37.19 2.90
1554 1632 3.427503 CCTTTTCCATTCCGTGCATGTAC 60.428 47.826 3.51 3.51 0.00 2.90
1654 1732 7.436673 CGTTCTTATATTTTGAGACAGAGGGAG 59.563 40.741 0.00 0.00 0.00 4.30
1655 1733 7.093465 ACGTTCTTATATTTTGAGACAGAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
1656 1734 7.042335 ACGTTCTTATATTTTGAGACAGAGGG 58.958 38.462 0.00 0.00 0.00 4.30
1657 1735 8.480643 AACGTTCTTATATTTTGAGACAGAGG 57.519 34.615 0.00 0.00 0.00 3.69
1674 1752 9.925268 CATTAGTGTAGTGTTAAAAACGTTCTT 57.075 29.630 0.00 0.00 0.00 2.52
1675 1753 9.101655 ACATTAGTGTAGTGTTAAAAACGTTCT 57.898 29.630 0.00 0.00 36.63 3.01
1676 1754 9.361712 GACATTAGTGTAGTGTTAAAAACGTTC 57.638 33.333 0.00 0.00 39.09 3.95
1677 1755 8.881743 TGACATTAGTGTAGTGTTAAAAACGTT 58.118 29.630 0.00 0.00 39.09 3.99
1678 1756 8.422973 TGACATTAGTGTAGTGTTAAAAACGT 57.577 30.769 0.00 0.00 39.09 3.99
1679 1757 9.705471 TTTGACATTAGTGTAGTGTTAAAAACG 57.295 29.630 0.00 0.00 39.09 3.60
1684 1762 9.398538 ACCTTTTTGACATTAGTGTAGTGTTAA 57.601 29.630 0.00 0.00 39.09 2.01
1685 1763 8.967664 ACCTTTTTGACATTAGTGTAGTGTTA 57.032 30.769 0.00 0.00 39.09 2.41
1686 1764 7.875327 ACCTTTTTGACATTAGTGTAGTGTT 57.125 32.000 0.00 0.00 39.09 3.32
1687 1765 7.773690 AGAACCTTTTTGACATTAGTGTAGTGT 59.226 33.333 0.00 0.00 39.09 3.55
1688 1766 8.154649 AGAACCTTTTTGACATTAGTGTAGTG 57.845 34.615 0.00 0.00 39.09 2.74
1689 1767 8.747538 AAGAACCTTTTTGACATTAGTGTAGT 57.252 30.769 0.00 0.00 39.09 2.73
1704 1782 9.765795 CTCCGTCTCATAATATAAGAACCTTTT 57.234 33.333 0.00 0.00 0.00 2.27
1705 1783 8.368668 CCTCCGTCTCATAATATAAGAACCTTT 58.631 37.037 0.00 0.00 0.00 3.11
1706 1784 7.038941 CCCTCCGTCTCATAATATAAGAACCTT 60.039 40.741 0.00 0.00 0.00 3.50
1707 1785 6.437793 CCCTCCGTCTCATAATATAAGAACCT 59.562 42.308 0.00 0.00 0.00 3.50
1708 1786 6.351117 CCCCTCCGTCTCATAATATAAGAACC 60.351 46.154 0.00 0.00 0.00 3.62
1709 1787 6.351117 CCCCCTCCGTCTCATAATATAAGAAC 60.351 46.154 0.00 0.00 0.00 3.01
1710 1788 5.720041 CCCCCTCCGTCTCATAATATAAGAA 59.280 44.000 0.00 0.00 0.00 2.52
1711 1789 5.222484 ACCCCCTCCGTCTCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1712 1790 5.024118 ACCCCCTCCGTCTCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1713 1791 5.019657 ACCCCCTCCGTCTCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1714 1792 4.687262 ACCCCCTCCGTCTCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1715 1793 3.562108 ACCCCCTCCGTCTCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1716 1794 3.400322 AGTACCCCCTCCGTCTCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
1717 1795 2.179424 AGTACCCCCTCCGTCTCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1718 1796 1.572415 AGTACCCCCTCCGTCTCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1719 1797 1.133575 CAGTACCCCCTCCGTCTCATA 60.134 57.143 0.00 0.00 0.00 2.15
1720 1798 0.397254 CAGTACCCCCTCCGTCTCAT 60.397 60.000 0.00 0.00 0.00 2.90
1721 1799 1.000019 CAGTACCCCCTCCGTCTCA 60.000 63.158 0.00 0.00 0.00 3.27
1722 1800 0.324091 TTCAGTACCCCCTCCGTCTC 60.324 60.000 0.00 0.00 0.00 3.36
1723 1801 0.324460 CTTCAGTACCCCCTCCGTCT 60.324 60.000 0.00 0.00 0.00 4.18
1724 1802 0.324091 TCTTCAGTACCCCCTCCGTC 60.324 60.000 0.00 0.00 0.00 4.79
1725 1803 0.115745 TTCTTCAGTACCCCCTCCGT 59.884 55.000 0.00 0.00 0.00 4.69
1726 1804 1.272807 TTTCTTCAGTACCCCCTCCG 58.727 55.000 0.00 0.00 0.00 4.63
1727 1805 4.226620 TGTTATTTCTTCAGTACCCCCTCC 59.773 45.833 0.00 0.00 0.00 4.30
1728 1806 5.431179 TGTTATTTCTTCAGTACCCCCTC 57.569 43.478 0.00 0.00 0.00 4.30
1729 1807 5.853572 TTGTTATTTCTTCAGTACCCCCT 57.146 39.130 0.00 0.00 0.00 4.79
1730 1808 6.661805 TGATTTGTTATTTCTTCAGTACCCCC 59.338 38.462 0.00 0.00 0.00 5.40
1731 1809 7.696992 TGATTTGTTATTTCTTCAGTACCCC 57.303 36.000 0.00 0.00 0.00 4.95
1765 1843 2.602257 AGGAAAACACAAGCAAAGCC 57.398 45.000 0.00 0.00 0.00 4.35
1799 1920 1.135333 GACTTTGGCTCGTAGGGAGAG 59.865 57.143 0.00 0.00 46.23 3.20
1800 1921 1.183549 GACTTTGGCTCGTAGGGAGA 58.816 55.000 0.00 0.00 46.23 3.71
1849 1970 1.273327 CCCACACCCTTTTCATGCTTC 59.727 52.381 0.00 0.00 0.00 3.86
1853 1974 3.433306 TCTACCCACACCCTTTTCATG 57.567 47.619 0.00 0.00 0.00 3.07
1962 2083 1.807142 GTCTTAACAGAGCAAGTGGGC 59.193 52.381 0.00 0.00 0.00 5.36
1982 2103 5.630661 AATATGCTCTACAGTACCGCTAG 57.369 43.478 0.00 0.00 0.00 3.42
2024 2145 4.452114 GCTTTGAATTGCCTCGGAATTTTT 59.548 37.500 0.00 0.00 0.00 1.94
2051 2172 4.564110 GTCCTATGCGGGGCCCAC 62.564 72.222 26.86 14.78 0.00 4.61
2060 2182 3.631250 TCTTGGGGATTTTGTCCTATGC 58.369 45.455 0.00 0.00 46.91 3.14
2193 2318 0.179240 CAAGTCATTGTCGCGTGCTC 60.179 55.000 5.77 0.00 0.00 4.26
2233 2358 2.189499 GGCGCCATCTTGTCCATCC 61.189 63.158 24.80 0.00 0.00 3.51
2257 2382 3.658398 CCTCTTGGGCTGTTGTGAT 57.342 52.632 0.00 0.00 0.00 3.06
2292 2417 2.201210 CTTGGGTTTGCTGGGGGT 59.799 61.111 0.00 0.00 0.00 4.95
2325 2450 8.971073 CATTAGACTAAATTCTTTGGTGGGAAT 58.029 33.333 0.00 0.00 34.29 3.01
2346 2471 6.867662 AGAGGGATGCGTTAAATTCATTAG 57.132 37.500 0.00 0.00 0.00 1.73
2458 2586 0.671781 GCTGCATCGTGAGACCTGTT 60.672 55.000 0.00 0.00 46.97 3.16
2537 2665 6.821160 TGTGTCACTGAGATTTACAAGTTGAA 59.179 34.615 10.54 0.00 0.00 2.69
2538 2666 6.345298 TGTGTCACTGAGATTTACAAGTTGA 58.655 36.000 10.54 0.00 0.00 3.18
2539 2667 6.258727 ACTGTGTCACTGAGATTTACAAGTTG 59.741 38.462 15.96 0.00 0.00 3.16
2540 2668 6.349300 ACTGTGTCACTGAGATTTACAAGTT 58.651 36.000 15.96 0.00 0.00 2.66
2541 2669 5.918608 ACTGTGTCACTGAGATTTACAAGT 58.081 37.500 15.96 0.00 0.00 3.16
2542 2670 6.293081 CCAACTGTGTCACTGAGATTTACAAG 60.293 42.308 15.96 0.00 0.00 3.16
2543 2671 5.527214 CCAACTGTGTCACTGAGATTTACAA 59.473 40.000 15.96 0.00 0.00 2.41
2546 2674 5.163353 TGACCAACTGTGTCACTGAGATTTA 60.163 40.000 15.96 0.00 37.80 1.40
2596 2724 8.972127 AGTGAAGATATGACAATGTACAGTAGT 58.028 33.333 0.33 0.00 0.00 2.73
2644 2805 5.445964 TGTCAGATCCTACTGTGCTACATA 58.554 41.667 0.00 0.00 38.79 2.29
2681 2842 1.082117 AGTTAGAACGATTGCCGCCG 61.082 55.000 0.00 0.00 43.32 6.46
2684 2845 5.464965 ACAATTAGTTAGAACGATTGCCG 57.535 39.130 17.17 0.00 39.10 5.69
2752 2913 3.132824 TCTCATTCTGCGCTTTCATCCTA 59.867 43.478 9.73 0.00 0.00 2.94
2831 2992 1.210155 CTGGTAAAGCAACGCAGGC 59.790 57.895 0.00 0.00 0.00 4.85
2865 3026 1.267574 CCTTAGCCTCTGCACCTCCA 61.268 60.000 0.00 0.00 41.13 3.86
2896 3057 7.759489 TTTATTTACCTGTTGCTTCAGTGAT 57.241 32.000 0.00 0.00 34.02 3.06
2897 3058 7.422399 GTTTTATTTACCTGTTGCTTCAGTGA 58.578 34.615 0.00 0.00 34.02 3.41
2898 3059 6.640907 GGTTTTATTTACCTGTTGCTTCAGTG 59.359 38.462 7.65 0.00 34.02 3.66
2924 3085 5.671493 TGCTAGAAGGGCTTGTTTATAGTC 58.329 41.667 0.00 0.00 0.00 2.59
2925 3086 5.693769 TGCTAGAAGGGCTTGTTTATAGT 57.306 39.130 0.00 0.00 0.00 2.12
2926 3087 7.573968 AAATGCTAGAAGGGCTTGTTTATAG 57.426 36.000 0.00 0.00 0.00 1.31
2973 3134 4.505191 CAGTCTGCCAAATGTTTCAAAGTG 59.495 41.667 0.00 0.00 0.00 3.16
2996 3157 7.328737 TCTTAAGATACTAAAGCCTGGAACAC 58.671 38.462 0.00 0.00 0.00 3.32
3005 3166 7.489574 AGCATTGCTCTTAAGATACTAAAGC 57.510 36.000 5.03 4.70 30.62 3.51
3006 3167 9.973450 TCTAGCATTGCTCTTAAGATACTAAAG 57.027 33.333 15.81 1.72 40.44 1.85
3020 3181 0.460987 AGGCACGTCTAGCATTGCTC 60.461 55.000 15.81 0.00 40.44 4.26
3036 3202 6.349363 CCACCAAAGTTACTTCAAAGATAGGC 60.349 42.308 0.00 0.00 0.00 3.93
3042 3208 9.981114 AATAATTCCACCAAAGTTACTTCAAAG 57.019 29.630 0.00 0.00 0.00 2.77
3069 3341 2.472695 TGGCAACTTAGTGCTACAGG 57.527 50.000 6.72 0.00 44.31 4.00
3070 3342 3.403038 ACTTGGCAACTTAGTGCTACAG 58.597 45.455 0.00 4.79 44.31 2.74
3071 3343 3.071023 AGACTTGGCAACTTAGTGCTACA 59.929 43.478 0.00 0.00 44.31 2.74
3073 3345 4.351874 AAGACTTGGCAACTTAGTGCTA 57.648 40.909 0.00 0.00 44.31 3.49
3075 3347 3.813166 TGTAAGACTTGGCAACTTAGTGC 59.187 43.478 9.75 0.00 44.14 4.40
3077 3349 6.354130 TCTTTGTAAGACTTGGCAACTTAGT 58.646 36.000 9.75 0.16 35.35 2.24
3078 3350 6.861065 TCTTTGTAAGACTTGGCAACTTAG 57.139 37.500 9.75 0.00 31.20 2.18
3079 3351 7.648142 CAATCTTTGTAAGACTTGGCAACTTA 58.352 34.615 0.00 0.68 41.01 2.24
3260 3532 5.105635 GCATCCATGTCATTTTCTCTTCCAA 60.106 40.000 0.00 0.00 0.00 3.53
3270 3542 2.691526 AGCAATCGCATCCATGTCATTT 59.308 40.909 0.00 0.00 42.27 2.32
3376 3648 2.096069 CCATCTTGTTCAGCACGTCAAG 60.096 50.000 6.17 6.17 38.69 3.02
3421 3693 2.507769 GGCATTTGCGCTGCTTCC 60.508 61.111 18.12 6.46 43.26 3.46
3429 3701 3.253921 TCATGAATCCTATGGCATTTGCG 59.746 43.478 4.78 0.00 43.26 4.85
3437 3709 2.613977 GCCTCGGTCATGAATCCTATGG 60.614 54.545 0.00 0.00 0.00 2.74
3438 3710 2.301296 AGCCTCGGTCATGAATCCTATG 59.699 50.000 0.00 0.00 0.00 2.23
3473 3748 1.202639 TGGCGTCCATCATGACCATAC 60.203 52.381 0.00 0.00 31.35 2.39
3474 3749 1.127343 TGGCGTCCATCATGACCATA 58.873 50.000 0.00 0.00 31.35 2.74
3828 4104 2.440539 AACTGTGAGTAACGAGGCAG 57.559 50.000 0.00 0.00 0.00 4.85
3865 4142 5.796935 CGGTCATCTATTGTTTTCAAGCAAG 59.203 40.000 0.00 0.00 43.41 4.01
3918 4195 2.537633 ATGTGCATTTCCTGGATGGT 57.462 45.000 0.00 0.00 37.07 3.55
3924 4201 2.159476 CCTCACGAATGTGCATTTCCTG 60.159 50.000 0.00 0.00 46.01 3.86
4042 4319 4.505742 GGAATTCAGGCTCCGAATTAGGAT 60.506 45.833 7.83 0.00 41.87 3.24
4044 4321 3.142174 GGAATTCAGGCTCCGAATTAGG 58.858 50.000 11.50 0.00 41.87 2.69
4123 4404 0.317479 ACACTGAGTAAGGTGCCGAC 59.683 55.000 0.00 0.00 36.99 4.79
4136 4417 1.000394 TCGGAGCGAATCAAACACTGA 60.000 47.619 0.00 0.00 38.81 3.41
4180 4461 4.507710 TCATTCACTTGGACATGCTCTAC 58.492 43.478 0.00 0.00 0.00 2.59
4210 4491 1.516603 GGCGGTAGAGCTCGTGAAC 60.517 63.158 8.37 5.60 37.29 3.18
4339 4620 8.752005 TGAATATTTGCAGGTTCTAGCTAATT 57.248 30.769 0.00 0.00 37.39 1.40
4406 4687 6.420903 GCCTGAAACAAACCAATAGAAAACTC 59.579 38.462 0.00 0.00 0.00 3.01
4569 4850 3.005050 TGTCGTCGTTGTTCTTCCTGTAT 59.995 43.478 0.00 0.00 0.00 2.29
4617 4898 2.434185 GGCAGATGGAACGACGCA 60.434 61.111 0.00 0.00 0.00 5.24
4967 5263 1.526917 GGTGGGCGGATCCTTCATG 60.527 63.158 10.75 0.00 34.39 3.07
5076 5372 2.799412 GGCTCATGATCTCGTTCATCAC 59.201 50.000 0.00 0.00 34.09 3.06
5103 5399 2.665185 GTTGCTCTCCGCCGTGTT 60.665 61.111 0.00 0.00 38.05 3.32
5123 5419 1.229400 GGTGGGGTAGAGGGACACA 60.229 63.158 0.00 0.00 33.91 3.72
5212 5508 1.140852 TGAGCATAATCTGGAACCCCG 59.859 52.381 0.00 0.00 34.29 5.73
5401 5697 5.254115 GCCTAGTGGAGTTTAACAGGAATT 58.746 41.667 0.00 0.00 34.57 2.17
5402 5698 4.324331 GGCCTAGTGGAGTTTAACAGGAAT 60.324 45.833 0.00 0.00 34.57 3.01
5403 5699 3.008704 GGCCTAGTGGAGTTTAACAGGAA 59.991 47.826 0.00 0.00 34.57 3.36
5423 5726 0.753867 GGGAACTAGCTAGGTGAGGC 59.246 60.000 24.35 6.19 0.00 4.70
5433 5736 4.261801 TCAGCAAATTACTGGGAACTAGC 58.738 43.478 8.18 0.00 35.78 3.42
5443 5746 2.679837 CAGGCGTCATCAGCAAATTACT 59.320 45.455 0.00 0.00 36.08 2.24
5452 5755 2.419673 TGCAAATAACAGGCGTCATCAG 59.580 45.455 0.00 0.00 0.00 2.90
5506 5810 3.364366 CGGAATGCAGTTTGACAGACTTC 60.364 47.826 0.00 0.00 0.00 3.01
5526 5830 0.249073 CAGTAACGCCAGGAGATCGG 60.249 60.000 0.00 0.00 0.00 4.18
5590 5894 6.750039 AGTGTCGTGGTTTTAGTTCAAATTTG 59.250 34.615 12.15 12.15 0.00 2.32
5733 6039 2.625883 CCCGACCATATATAGGCCAGGA 60.626 54.545 5.01 0.00 0.00 3.86
5744 6050 6.156429 AGAGAGTAAAGAAAACCCGACCATAT 59.844 38.462 0.00 0.00 0.00 1.78
5752 6058 4.822350 AGTTGCAGAGAGTAAAGAAAACCC 59.178 41.667 0.00 0.00 0.00 4.11
5817 6123 4.549489 CGACGACAACAACAGGTTTAGTTC 60.549 45.833 0.00 0.00 37.72 3.01
5823 6129 1.283736 GACGACGACAACAACAGGTT 58.716 50.000 0.00 0.00 41.47 3.50
5836 6142 0.379760 CAACAACAACGACGACGACG 60.380 55.000 17.60 17.60 42.66 5.12
5839 6145 2.975103 TAACAACAACAACGACGACG 57.025 45.000 5.58 5.58 45.75 5.12
5842 6148 7.653523 AGTTTTTATAACAACAACAACGACG 57.346 32.000 15.08 0.00 0.00 5.12
5912 6233 4.522114 TCCAACACATTCACTGAACTGAA 58.478 39.130 0.00 0.00 34.65 3.02
5959 6280 3.941483 CCGAAAGAGAACCATTATGCTGT 59.059 43.478 0.00 0.00 0.00 4.40
6059 6380 4.081031 AGGGAGTATCTGATATGCATGCAG 60.081 45.833 26.69 19.62 33.73 4.41
6077 6398 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
6078 6399 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
6079 6400 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
6095 6416 9.985730 TGCATTTGAATCTCTAAAAAGACAAAT 57.014 25.926 0.00 0.00 34.68 2.32
6096 6417 9.248291 GTGCATTTGAATCTCTAAAAAGACAAA 57.752 29.630 0.00 0.00 30.50 2.83
6097 6418 8.632679 AGTGCATTTGAATCTCTAAAAAGACAA 58.367 29.630 0.00 0.00 0.00 3.18
6098 6419 8.169977 AGTGCATTTGAATCTCTAAAAAGACA 57.830 30.769 0.00 0.00 0.00 3.41
6103 6424 9.230122 TGTGATAGTGCATTTGAATCTCTAAAA 57.770 29.630 0.00 0.00 0.00 1.52
6104 6425 8.791327 TGTGATAGTGCATTTGAATCTCTAAA 57.209 30.769 0.00 0.00 0.00 1.85
6105 6426 8.969260 ATGTGATAGTGCATTTGAATCTCTAA 57.031 30.769 0.00 0.00 0.00 2.10
6106 6427 9.481340 GTATGTGATAGTGCATTTGAATCTCTA 57.519 33.333 0.00 0.00 0.00 2.43
6107 6428 7.170489 CGTATGTGATAGTGCATTTGAATCTCT 59.830 37.037 0.00 0.00 0.00 3.10
6108 6429 7.286508 CGTATGTGATAGTGCATTTGAATCTC 58.713 38.462 0.00 0.00 0.00 2.75
6109 6430 6.203530 CCGTATGTGATAGTGCATTTGAATCT 59.796 38.462 0.00 0.00 0.00 2.40
6110 6431 6.202762 TCCGTATGTGATAGTGCATTTGAATC 59.797 38.462 0.00 0.00 0.00 2.52
6111 6432 6.054941 TCCGTATGTGATAGTGCATTTGAAT 58.945 36.000 0.00 0.00 0.00 2.57
6112 6433 5.423886 TCCGTATGTGATAGTGCATTTGAA 58.576 37.500 0.00 0.00 0.00 2.69
6113 6434 5.017294 TCCGTATGTGATAGTGCATTTGA 57.983 39.130 0.00 0.00 0.00 2.69
6114 6435 5.237127 ACATCCGTATGTGATAGTGCATTTG 59.763 40.000 0.00 0.00 44.79 2.32
6115 6436 5.368145 ACATCCGTATGTGATAGTGCATTT 58.632 37.500 0.00 0.00 44.79 2.32
6116 6437 4.960938 ACATCCGTATGTGATAGTGCATT 58.039 39.130 0.00 0.00 44.79 3.56
6117 6438 4.607293 ACATCCGTATGTGATAGTGCAT 57.393 40.909 0.00 0.00 44.79 3.96
6118 6439 5.722021 ATACATCCGTATGTGATAGTGCA 57.278 39.130 3.56 0.00 45.99 4.57
6119 6440 8.837389 TCTATATACATCCGTATGTGATAGTGC 58.163 37.037 17.08 0.00 45.99 4.40
6121 6442 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
6156 6477 3.839293 AGCGAACTGAGTGAATCTACAC 58.161 45.455 0.00 0.00 40.60 2.90
6157 6478 3.119459 GGAGCGAACTGAGTGAATCTACA 60.119 47.826 0.00 0.00 0.00 2.74
6158 6479 3.440228 GGAGCGAACTGAGTGAATCTAC 58.560 50.000 0.00 0.00 0.00 2.59
6159 6480 2.097629 CGGAGCGAACTGAGTGAATCTA 59.902 50.000 0.00 0.00 0.00 1.98
6160 6481 1.135257 CGGAGCGAACTGAGTGAATCT 60.135 52.381 0.00 0.00 0.00 2.40
6161 6482 1.272781 CGGAGCGAACTGAGTGAATC 58.727 55.000 0.00 0.00 0.00 2.52
6162 6483 0.603569 ACGGAGCGAACTGAGTGAAT 59.396 50.000 0.00 0.00 0.00 2.57
6163 6484 1.241165 TACGGAGCGAACTGAGTGAA 58.759 50.000 0.00 0.00 0.00 3.18
6164 6485 1.132453 CATACGGAGCGAACTGAGTGA 59.868 52.381 0.00 0.00 0.00 3.41
6165 6486 1.135373 ACATACGGAGCGAACTGAGTG 60.135 52.381 0.00 0.00 0.00 3.51
6166 6487 1.174783 ACATACGGAGCGAACTGAGT 58.825 50.000 0.00 0.00 0.00 3.41
6167 6488 2.355132 ACTACATACGGAGCGAACTGAG 59.645 50.000 0.00 0.00 0.00 3.35
6168 6489 2.353889 GACTACATACGGAGCGAACTGA 59.646 50.000 0.00 0.00 0.00 3.41
6169 6490 2.096980 TGACTACATACGGAGCGAACTG 59.903 50.000 0.00 0.00 0.00 3.16
6170 6491 2.097142 GTGACTACATACGGAGCGAACT 59.903 50.000 0.00 0.00 0.00 3.01
6171 6492 2.097142 AGTGACTACATACGGAGCGAAC 59.903 50.000 0.00 0.00 0.00 3.95
6172 6493 2.362736 AGTGACTACATACGGAGCGAA 58.637 47.619 0.00 0.00 0.00 4.70
6173 6494 2.034104 AGTGACTACATACGGAGCGA 57.966 50.000 0.00 0.00 0.00 4.93
6174 6495 2.159421 ACAAGTGACTACATACGGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
6175 6496 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
6176 6497 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
6177 6498 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
6178 6499 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
6179 6500 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
6180 6501 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
6182 6503 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
6183 6504 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
6184 6505 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
6185 6506 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
6186 6507 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
6187 6508 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
6188 6509 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
6189 6510 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
6190 6511 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
6206 6527 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
6207 6528 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
6208 6529 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
6209 6530 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
6210 6531 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
6211 6532 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
6212 6533 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
6213 6534 9.640952 TTTACTCCCTCCATTCCTAAATATTTG 57.359 33.333 11.05 1.40 0.00 2.32
6220 6541 8.887393 GGTATATTTTACTCCCTCCATTCCTAA 58.113 37.037 0.00 0.00 0.00 2.69
6221 6542 8.020253 TGGTATATTTTACTCCCTCCATTCCTA 58.980 37.037 0.00 0.00 0.00 2.94
6222 6543 6.855061 TGGTATATTTTACTCCCTCCATTCCT 59.145 38.462 0.00 0.00 0.00 3.36
6223 6544 6.940867 GTGGTATATTTTACTCCCTCCATTCC 59.059 42.308 0.00 0.00 0.00 3.01
6224 6545 6.940867 GGTGGTATATTTTACTCCCTCCATTC 59.059 42.308 0.00 0.00 0.00 2.67
6225 6546 6.391649 TGGTGGTATATTTTACTCCCTCCATT 59.608 38.462 0.00 0.00 0.00 3.16
6226 6547 5.914716 TGGTGGTATATTTTACTCCCTCCAT 59.085 40.000 0.00 0.00 0.00 3.41
6227 6548 5.290335 TGGTGGTATATTTTACTCCCTCCA 58.710 41.667 0.00 0.00 0.00 3.86
6228 6549 5.368816 ACTGGTGGTATATTTTACTCCCTCC 59.631 44.000 0.00 0.00 0.00 4.30
6229 6550 6.496144 ACTGGTGGTATATTTTACTCCCTC 57.504 41.667 0.00 0.00 0.00 4.30
6230 6551 6.445786 TGAACTGGTGGTATATTTTACTCCCT 59.554 38.462 0.00 0.00 0.00 4.20
6231 6552 6.655930 TGAACTGGTGGTATATTTTACTCCC 58.344 40.000 0.00 0.00 0.00 4.30
6232 6553 8.747538 ATTGAACTGGTGGTATATTTTACTCC 57.252 34.615 0.00 0.00 0.00 3.85
6238 6559 9.707957 TCCATTTATTGAACTGGTGGTATATTT 57.292 29.630 0.00 0.00 0.00 1.40
6314 6636 7.777440 TGGTGGAGTACATGCAAATATTATGAA 59.223 33.333 0.00 0.00 0.00 2.57
6315 6637 7.286313 TGGTGGAGTACATGCAAATATTATGA 58.714 34.615 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.