Multiple sequence alignment - TraesCS3B01G354500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G354500 chr3B 100.000 3488 0 0 1 3488 564780373 564783860 0.000000e+00 6442.0
1 TraesCS3B01G354500 chr3B 78.272 1597 314 27 922 2505 786715005 786716581 0.000000e+00 996.0
2 TraesCS3B01G354500 chr3B 91.080 213 18 1 704 916 528679129 528679340 1.580000e-73 287.0
3 TraesCS3B01G354500 chr3B 90.556 180 17 0 1 180 528661107 528661286 4.500000e-59 239.0
4 TraesCS3B01G354500 chr3B 88.966 145 12 4 1 142 143598679 143598536 3.580000e-40 176.0
5 TraesCS3B01G354500 chr7B 97.506 2085 37 2 916 2986 232264602 232262519 0.000000e+00 3548.0
6 TraesCS3B01G354500 chr7B 96.997 333 9 1 590 922 421068563 421068894 3.040000e-155 558.0
7 TraesCS3B01G354500 chr7B 93.675 332 18 2 263 591 727134232 727134563 8.700000e-136 494.0
8 TraesCS3B01G354500 chr7B 93.617 329 15 2 590 918 727134612 727134934 1.460000e-133 486.0
9 TraesCS3B01G354500 chr7B 96.552 261 8 1 3 263 727133832 727134091 6.920000e-117 431.0
10 TraesCS3B01G354500 chr7B 98.182 220 4 0 1 220 421068124 421068343 5.460000e-103 385.0
11 TraesCS3B01G354500 chr7B 97.076 171 4 1 421 591 421068345 421068514 1.580000e-73 287.0
12 TraesCS3B01G354500 chr2B 97.054 1358 26 1 1639 2982 521442722 521444079 0.000000e+00 2274.0
13 TraesCS3B01G354500 chr2B 95.965 347 10 3 263 606 769545646 769545301 8.450000e-156 560.0
14 TraesCS3B01G354500 chr2B 95.783 332 9 1 590 916 769545267 769544936 6.630000e-147 531.0
15 TraesCS3B01G354500 chr2B 91.255 263 3 1 1 263 769546579 769546337 1.200000e-89 340.0
16 TraesCS3B01G354500 chr1B 83.089 1703 269 19 939 2634 26328853 26327163 0.000000e+00 1531.0
17 TraesCS3B01G354500 chr7A 82.512 1704 283 13 937 2634 681669031 681670725 0.000000e+00 1482.0
18 TraesCS3B01G354500 chr7A 83.573 347 40 5 2657 2986 543348687 543349033 3.380000e-80 309.0
19 TraesCS3B01G354500 chr4A 82.374 1702 280 17 939 2634 232517624 232515937 0.000000e+00 1463.0
20 TraesCS3B01G354500 chr4A 98.187 331 6 0 590 920 705243943 705244273 2.330000e-161 579.0
21 TraesCS3B01G354500 chr4A 97.281 331 7 1 263 591 705243564 705243894 8.450000e-156 560.0
22 TraesCS3B01G354500 chr4A 97.744 266 3 1 1 263 705242750 705243015 4.100000e-124 455.0
23 TraesCS3B01G354500 chr4A 89.256 242 12 6 263 493 659017126 659017364 1.220000e-74 291.0
24 TraesCS3B01G354500 chr4A 90.385 52 5 0 611 662 659017499 659017550 6.250000e-08 69.4
25 TraesCS3B01G354500 chr1D 84.291 1496 221 12 1000 2489 470746628 470748115 0.000000e+00 1448.0
26 TraesCS3B01G354500 chr1D 94.118 153 9 0 3141 3293 481315168 481315016 2.090000e-57 233.0
27 TraesCS3B01G354500 chr1D 94.000 150 9 0 3144 3293 261725115 261725264 9.740000e-56 228.0
28 TraesCS3B01G354500 chr1D 93.506 154 9 1 3141 3293 481168322 481168169 9.740000e-56 228.0
29 TraesCS3B01G354500 chr2A 81.631 1704 293 17 939 2634 722244313 722242622 0.000000e+00 1395.0
30 TraesCS3B01G354500 chr2D 79.310 1595 308 16 917 2505 23412678 23414256 0.000000e+00 1098.0
31 TraesCS3B01G354500 chr2D 94.702 151 8 0 3143 3293 647863561 647863711 5.820000e-58 235.0
32 TraesCS3B01G354500 chr2D 84.264 197 19 7 3289 3473 606504275 606504471 7.690000e-42 182.0
33 TraesCS3B01G354500 chr5A 79.161 1598 311 17 917 2505 4979222 4980806 0.000000e+00 1086.0
34 TraesCS3B01G354500 chr5A 84.012 344 38 7 2660 2986 484824150 484824493 7.270000e-82 315.0
35 TraesCS3B01G354500 chr5A 83.105 219 32 5 700 916 30648042 30648257 9.880000e-46 195.0
36 TraesCS3B01G354500 chrUn 78.759 1483 306 8 916 2395 94576134 94574658 0.000000e+00 985.0
37 TraesCS3B01G354500 chr6B 96.254 347 9 3 263 606 643247751 643247406 1.820000e-157 566.0
38 TraesCS3B01G354500 chr6B 93.656 331 13 3 590 920 643247372 643247050 4.050000e-134 488.0
39 TraesCS3B01G354500 chr6B 96.958 263 8 0 1 263 643248703 643248441 3.200000e-120 442.0
40 TraesCS3B01G354500 chr5D 81.146 541 57 25 424 920 360900558 360901097 3.260000e-105 392.0
41 TraesCS3B01G354500 chr5D 88.947 190 16 2 1 190 360900259 360900443 2.710000e-56 230.0
42 TraesCS3B01G354500 chr5D 97.059 34 1 0 437 470 360900447 360900480 1.350000e-04 58.4
43 TraesCS3B01G354500 chr4B 91.636 275 21 2 318 591 621812680 621812953 2.540000e-101 379.0
44 TraesCS3B01G354500 chr4B 95.041 242 11 1 591 832 621813003 621813243 2.540000e-101 379.0
45 TraesCS3B01G354500 chr4B 73.684 893 224 9 916 1802 653499908 653500795 1.550000e-88 337.0
46 TraesCS3B01G354500 chr4B 98.291 117 2 0 1 117 621811969 621812085 4.560000e-49 206.0
47 TraesCS3B01G354500 chr4B 100.000 76 0 0 843 918 621818176 621818251 1.310000e-29 141.0
48 TraesCS3B01G354500 chr3A 85.965 342 32 5 590 916 642169956 642169616 5.540000e-93 351.0
49 TraesCS3B01G354500 chr3A 91.772 158 13 0 3136 3293 555647841 555647684 1.630000e-53 220.0
50 TraesCS3B01G354500 chr3A 85.455 165 13 6 2986 3143 570798828 570798988 1.000000e-35 161.0
51 TraesCS3B01G354500 chr7D 94.000 150 9 0 3144 3293 94461975 94461826 9.740000e-56 228.0
52 TraesCS3B01G354500 chr7D 93.464 153 10 0 3141 3293 562227113 562226961 9.740000e-56 228.0
53 TraesCS3B01G354500 chr7D 93.377 151 10 0 3143 3293 94454544 94454694 1.260000e-54 224.0
54 TraesCS3B01G354500 chr7D 93.377 151 10 0 3143 3293 562219840 562219990 1.260000e-54 224.0
55 TraesCS3B01G354500 chr7D 78.853 279 58 1 2216 2494 549098074 549098351 1.650000e-43 187.0
56 TraesCS3B01G354500 chr7D 84.574 188 24 4 3292 3479 562226933 562226751 7.690000e-42 182.0
57 TraesCS3B01G354500 chr6D 84.264 197 19 7 3289 3473 17866927 17867123 7.690000e-42 182.0
58 TraesCS3B01G354500 chr3D 82.500 200 23 7 3292 3479 171327273 171327074 7.750000e-37 165.0
59 TraesCS3B01G354500 chr3D 84.459 148 18 4 3289 3436 609964881 609965023 1.310000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G354500 chr3B 564780373 564783860 3487 False 6442.000000 6442 100.000000 1 3488 1 chr3B.!!$F3 3487
1 TraesCS3B01G354500 chr3B 786715005 786716581 1576 False 996.000000 996 78.272000 922 2505 1 chr3B.!!$F4 1583
2 TraesCS3B01G354500 chr7B 232262519 232264602 2083 True 3548.000000 3548 97.506000 916 2986 1 chr7B.!!$R1 2070
3 TraesCS3B01G354500 chr7B 727133832 727134934 1102 False 470.333333 494 94.614667 3 918 3 chr7B.!!$F2 915
4 TraesCS3B01G354500 chr7B 421068124 421068894 770 False 410.000000 558 97.418333 1 922 3 chr7B.!!$F1 921
5 TraesCS3B01G354500 chr2B 521442722 521444079 1357 False 2274.000000 2274 97.054000 1639 2982 1 chr2B.!!$F1 1343
6 TraesCS3B01G354500 chr2B 769544936 769546579 1643 True 477.000000 560 94.334333 1 916 3 chr2B.!!$R1 915
7 TraesCS3B01G354500 chr1B 26327163 26328853 1690 True 1531.000000 1531 83.089000 939 2634 1 chr1B.!!$R1 1695
8 TraesCS3B01G354500 chr7A 681669031 681670725 1694 False 1482.000000 1482 82.512000 937 2634 1 chr7A.!!$F2 1697
9 TraesCS3B01G354500 chr4A 232515937 232517624 1687 True 1463.000000 1463 82.374000 939 2634 1 chr4A.!!$R1 1695
10 TraesCS3B01G354500 chr4A 705242750 705244273 1523 False 531.333333 579 97.737333 1 920 3 chr4A.!!$F2 919
11 TraesCS3B01G354500 chr1D 470746628 470748115 1487 False 1448.000000 1448 84.291000 1000 2489 1 chr1D.!!$F2 1489
12 TraesCS3B01G354500 chr2A 722242622 722244313 1691 True 1395.000000 1395 81.631000 939 2634 1 chr2A.!!$R1 1695
13 TraesCS3B01G354500 chr2D 23412678 23414256 1578 False 1098.000000 1098 79.310000 917 2505 1 chr2D.!!$F1 1588
14 TraesCS3B01G354500 chr5A 4979222 4980806 1584 False 1086.000000 1086 79.161000 917 2505 1 chr5A.!!$F1 1588
15 TraesCS3B01G354500 chrUn 94574658 94576134 1476 True 985.000000 985 78.759000 916 2395 1 chrUn.!!$R1 1479
16 TraesCS3B01G354500 chr6B 643247050 643248703 1653 True 498.666667 566 95.622667 1 920 3 chr6B.!!$R1 919
17 TraesCS3B01G354500 chr5D 360900259 360901097 838 False 226.800000 392 89.050667 1 920 3 chr5D.!!$F1 919
18 TraesCS3B01G354500 chr4B 653499908 653500795 887 False 337.000000 337 73.684000 916 1802 1 chr4B.!!$F2 886
19 TraesCS3B01G354500 chr4B 621811969 621813243 1274 False 321.333333 379 94.989333 1 832 3 chr4B.!!$F3 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 263 0.114364 GGTTTCCTGGGGTGAATGGT 59.886 55.000 0.00 0.0 0.0 3.55 F
697 1517 0.573521 TTCGTGCGTTTCTGTTCGAC 59.426 50.000 0.00 0.0 0.0 4.20 F
1447 2289 3.069586 GCTTCCTAGGGTGCAAACTTTTT 59.930 43.478 9.46 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 2188 1.134907 GCAGGCACATTTCTGGGATTG 60.135 52.381 0.00 0.0 0.00 2.67 R
1601 2443 4.543590 TCAGATCTGAGAAACCAAGGAC 57.456 45.455 21.67 0.0 34.14 3.85 R
3244 4105 0.038343 CCGCCCATCAGTGGTTTTTG 60.038 55.000 0.00 0.0 44.48 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 263 0.114364 GGTTTCCTGGGGTGAATGGT 59.886 55.000 0.00 0.00 0.00 3.55
382 1115 5.046304 CACCATAGGAAAGAAGACAGAGGAA 60.046 44.000 0.00 0.00 0.00 3.36
677 1497 0.894184 GGGGAGATATGACCGAGCGA 60.894 60.000 0.00 0.00 0.00 4.93
697 1517 0.573521 TTCGTGCGTTTCTGTTCGAC 59.426 50.000 0.00 0.00 0.00 4.20
1043 1884 8.279103 GGCTCATTCTTTCTATCAATTAACTCG 58.721 37.037 0.00 0.00 0.00 4.18
1146 1987 6.885922 TGGCTTTAGTTATCCCTCTTTAGTC 58.114 40.000 0.00 0.00 0.00 2.59
1298 2139 3.391296 TGGGATCTTACTCCTAATGGCAC 59.609 47.826 0.00 0.00 35.50 5.01
1347 2188 6.038714 AGCTTAGTTTGCAGCAGATTTATACC 59.961 38.462 0.00 0.00 38.61 2.73
1447 2289 3.069586 GCTTCCTAGGGTGCAAACTTTTT 59.930 43.478 9.46 0.00 0.00 1.94
1601 2443 2.597217 TGCGGCCTGGTTTTCCTG 60.597 61.111 0.00 0.00 41.38 3.86
1832 2674 3.980646 TTTGGACTTTGATGGTGTTCG 57.019 42.857 0.00 0.00 0.00 3.95
1918 2760 3.594603 TGCAAGGTACTACTCTCAAGC 57.405 47.619 0.00 0.00 38.49 4.01
2211 3055 2.562738 TCTTGCTAAGTGTGCTGCTCTA 59.437 45.455 0.00 0.00 0.00 2.43
2722 3569 7.460071 AGGATGATGCTGCTATTTAATCTCTT 58.540 34.615 0.00 0.00 0.00 2.85
2827 3674 5.850557 TTTTGGTCATGTTGTTCATCAGT 57.149 34.783 0.00 0.00 34.09 3.41
2916 3777 7.337942 CCTATTTCTTGGCAGATCTTGTAACTT 59.662 37.037 0.00 0.00 0.00 2.66
3005 3866 7.499321 AAAAACTGGGTTTTCGTTTTCTTTT 57.501 28.000 8.52 0.00 43.67 2.27
3006 3867 7.499321 AAAACTGGGTTTTCGTTTTCTTTTT 57.501 28.000 2.99 0.00 41.11 1.94
3007 3868 6.715344 AACTGGGTTTTCGTTTTCTTTTTC 57.285 33.333 0.00 0.00 0.00 2.29
3008 3869 5.785243 ACTGGGTTTTCGTTTTCTTTTTCA 58.215 33.333 0.00 0.00 0.00 2.69
3009 3870 5.867174 ACTGGGTTTTCGTTTTCTTTTTCAG 59.133 36.000 0.00 0.00 0.00 3.02
3010 3871 5.172205 TGGGTTTTCGTTTTCTTTTTCAGG 58.828 37.500 0.00 0.00 0.00 3.86
3011 3872 5.047235 TGGGTTTTCGTTTTCTTTTTCAGGA 60.047 36.000 0.00 0.00 0.00 3.86
3012 3873 5.518847 GGGTTTTCGTTTTCTTTTTCAGGAG 59.481 40.000 0.00 0.00 0.00 3.69
3013 3874 6.327154 GGTTTTCGTTTTCTTTTTCAGGAGA 58.673 36.000 0.00 0.00 0.00 3.71
3014 3875 6.252869 GGTTTTCGTTTTCTTTTTCAGGAGAC 59.747 38.462 0.00 0.00 0.00 3.36
3015 3876 6.503589 TTTCGTTTTCTTTTTCAGGAGACA 57.496 33.333 0.00 0.00 0.00 3.41
3016 3877 6.693315 TTCGTTTTCTTTTTCAGGAGACAT 57.307 33.333 0.00 0.00 0.00 3.06
3017 3878 6.300354 TCGTTTTCTTTTTCAGGAGACATC 57.700 37.500 0.00 0.00 0.00 3.06
3018 3879 5.820423 TCGTTTTCTTTTTCAGGAGACATCA 59.180 36.000 0.00 0.00 0.00 3.07
3019 3880 6.486657 TCGTTTTCTTTTTCAGGAGACATCAT 59.513 34.615 0.00 0.00 0.00 2.45
3020 3881 6.580041 CGTTTTCTTTTTCAGGAGACATCATG 59.420 38.462 0.00 0.00 38.59 3.07
3021 3882 6.579666 TTTCTTTTTCAGGAGACATCATGG 57.420 37.500 0.00 0.00 37.81 3.66
3022 3883 5.503634 TCTTTTTCAGGAGACATCATGGA 57.496 39.130 0.00 0.00 37.81 3.41
3023 3884 5.879763 TCTTTTTCAGGAGACATCATGGAA 58.120 37.500 0.00 0.00 37.81 3.53
3024 3885 5.707298 TCTTTTTCAGGAGACATCATGGAAC 59.293 40.000 0.00 0.00 34.51 3.62
3039 3900 3.535280 TGGAACAAAAGCTTTTCACCC 57.465 42.857 21.45 19.83 31.92 4.61
3040 3901 2.159170 TGGAACAAAAGCTTTTCACCCG 60.159 45.455 21.45 12.39 31.92 5.28
3041 3902 2.469826 GAACAAAAGCTTTTCACCCGG 58.530 47.619 21.45 11.70 0.00 5.73
3042 3903 1.480789 ACAAAAGCTTTTCACCCGGT 58.519 45.000 21.45 12.33 0.00 5.28
3043 3904 1.828595 ACAAAAGCTTTTCACCCGGTT 59.171 42.857 21.45 0.00 0.00 4.44
3044 3905 2.235155 ACAAAAGCTTTTCACCCGGTTT 59.765 40.909 21.45 0.00 0.00 3.27
3045 3906 2.595124 AAAGCTTTTCACCCGGTTTG 57.405 45.000 5.69 0.00 0.00 2.93
3046 3907 1.480789 AAGCTTTTCACCCGGTTTGT 58.519 45.000 0.00 0.00 0.00 2.83
3047 3908 0.744281 AGCTTTTCACCCGGTTTGTG 59.256 50.000 0.00 1.12 35.01 3.33
3048 3909 0.741915 GCTTTTCACCCGGTTTGTGA 59.258 50.000 7.82 7.82 40.80 3.58
3051 3912 2.395651 TTCACCCGGTTTGTGAACG 58.604 52.632 17.57 0.00 45.19 3.95
3052 3913 0.107800 TTCACCCGGTTTGTGAACGA 60.108 50.000 17.57 0.45 45.19 3.85
3053 3914 0.107081 TCACCCGGTTTGTGAACGAT 59.893 50.000 9.30 0.00 39.66 3.73
3054 3915 0.237235 CACCCGGTTTGTGAACGATG 59.763 55.000 0.00 0.00 36.61 3.84
3055 3916 0.887387 ACCCGGTTTGTGAACGATGG 60.887 55.000 0.00 0.00 36.61 3.51
3056 3917 0.604243 CCCGGTTTGTGAACGATGGA 60.604 55.000 0.00 0.00 36.61 3.41
3057 3918 1.448985 CCGGTTTGTGAACGATGGAT 58.551 50.000 0.00 0.00 36.61 3.41
3058 3919 1.396996 CCGGTTTGTGAACGATGGATC 59.603 52.381 0.00 0.00 36.61 3.36
3071 3932 1.728971 GATGGATCGAATCATCCGTGC 59.271 52.381 16.06 1.34 45.03 5.34
3072 3933 0.597377 TGGATCGAATCATCCGTGCG 60.597 55.000 0.00 0.00 45.03 5.34
3073 3934 1.488957 GATCGAATCATCCGTGCGC 59.511 57.895 0.00 0.00 0.00 6.09
3074 3935 0.941463 GATCGAATCATCCGTGCGCT 60.941 55.000 9.73 0.00 0.00 5.92
3075 3936 1.217585 ATCGAATCATCCGTGCGCTG 61.218 55.000 9.73 0.08 0.00 5.18
3076 3937 2.167219 CGAATCATCCGTGCGCTGT 61.167 57.895 9.73 0.00 0.00 4.40
3077 3938 1.638467 GAATCATCCGTGCGCTGTC 59.362 57.895 9.73 0.00 0.00 3.51
3078 3939 2.082437 GAATCATCCGTGCGCTGTCG 62.082 60.000 9.73 11.00 39.07 4.35
3079 3940 2.835701 AATCATCCGTGCGCTGTCGT 62.836 55.000 9.73 0.00 38.14 4.34
3080 3941 2.000215 ATCATCCGTGCGCTGTCGTA 62.000 55.000 9.73 0.00 38.14 3.43
3081 3942 1.588932 CATCCGTGCGCTGTCGTAT 60.589 57.895 9.73 0.54 38.14 3.06
3082 3943 1.588932 ATCCGTGCGCTGTCGTATG 60.589 57.895 9.73 0.00 37.13 2.39
3083 3944 3.913573 CCGTGCGCTGTCGTATGC 61.914 66.667 9.73 0.00 36.25 3.14
3084 3945 3.178592 CGTGCGCTGTCGTATGCA 61.179 61.111 9.73 0.00 38.14 3.96
3085 3946 2.697425 GTGCGCTGTCGTATGCAG 59.303 61.111 9.73 2.98 38.14 4.41
3086 3947 1.805539 GTGCGCTGTCGTATGCAGA 60.806 57.895 9.73 0.00 38.14 4.26
3087 3948 1.517039 TGCGCTGTCGTATGCAGAG 60.517 57.895 9.73 7.76 36.12 3.35
3088 3949 3.303605 CGCTGTCGTATGCAGAGC 58.696 61.111 9.65 0.00 36.12 4.09
3089 3950 1.517039 CGCTGTCGTATGCAGAGCA 60.517 57.895 9.65 0.00 44.86 4.26
3090 3951 1.477826 CGCTGTCGTATGCAGAGCAG 61.478 60.000 9.65 0.00 43.65 4.24
3091 3952 0.459237 GCTGTCGTATGCAGAGCAGT 60.459 55.000 9.65 0.00 43.65 4.40
3092 3953 2.001812 CTGTCGTATGCAGAGCAGTT 57.998 50.000 0.00 0.00 43.65 3.16
3093 3954 2.341257 CTGTCGTATGCAGAGCAGTTT 58.659 47.619 0.00 0.00 43.65 2.66
3094 3955 2.337583 TGTCGTATGCAGAGCAGTTTC 58.662 47.619 0.00 0.00 43.65 2.78
3095 3956 1.321743 GTCGTATGCAGAGCAGTTTCG 59.678 52.381 0.00 0.60 43.65 3.46
3096 3957 1.201414 TCGTATGCAGAGCAGTTTCGA 59.799 47.619 0.00 2.82 43.65 3.71
3097 3958 2.159240 TCGTATGCAGAGCAGTTTCGAT 60.159 45.455 0.00 0.00 43.65 3.59
3098 3959 2.034254 CGTATGCAGAGCAGTTTCGATG 60.034 50.000 0.00 0.00 43.65 3.84
3099 3960 2.391616 ATGCAGAGCAGTTTCGATGA 57.608 45.000 0.00 0.00 43.65 2.92
3100 3961 2.168326 TGCAGAGCAGTTTCGATGAA 57.832 45.000 0.00 0.00 33.32 2.57
3101 3962 2.493035 TGCAGAGCAGTTTCGATGAAA 58.507 42.857 0.00 0.00 33.32 2.69
3135 3996 4.736126 AAAAATACAGGGCCATACAAGC 57.264 40.909 6.18 0.00 0.00 4.01
3136 3997 3.380471 AAATACAGGGCCATACAAGCA 57.620 42.857 6.18 0.00 0.00 3.91
3137 3998 3.380471 AATACAGGGCCATACAAGCAA 57.620 42.857 6.18 0.00 0.00 3.91
3138 3999 3.600448 ATACAGGGCCATACAAGCAAT 57.400 42.857 6.18 0.00 0.00 3.56
3139 4000 2.236489 ACAGGGCCATACAAGCAATT 57.764 45.000 6.18 0.00 0.00 2.32
3140 4001 2.539302 ACAGGGCCATACAAGCAATTT 58.461 42.857 6.18 0.00 0.00 1.82
3141 4002 3.707316 ACAGGGCCATACAAGCAATTTA 58.293 40.909 6.18 0.00 0.00 1.40
3142 4003 3.701040 ACAGGGCCATACAAGCAATTTAG 59.299 43.478 6.18 0.00 0.00 1.85
3143 4004 3.068590 CAGGGCCATACAAGCAATTTAGG 59.931 47.826 6.18 0.00 0.00 2.69
3144 4005 3.052944 AGGGCCATACAAGCAATTTAGGA 60.053 43.478 6.18 0.00 0.00 2.94
3145 4006 3.319122 GGGCCATACAAGCAATTTAGGAG 59.681 47.826 4.39 0.00 0.00 3.69
3146 4007 3.954258 GGCCATACAAGCAATTTAGGAGT 59.046 43.478 0.00 0.00 0.00 3.85
3147 4008 5.130350 GGCCATACAAGCAATTTAGGAGTA 58.870 41.667 0.00 0.00 0.00 2.59
3148 4009 5.592688 GGCCATACAAGCAATTTAGGAGTAA 59.407 40.000 0.00 0.00 0.00 2.24
3149 4010 6.096282 GGCCATACAAGCAATTTAGGAGTAAA 59.904 38.462 0.00 0.00 32.60 2.01
3150 4011 7.201911 GGCCATACAAGCAATTTAGGAGTAAAT 60.202 37.037 0.00 0.00 40.04 1.40
3151 4012 8.197439 GCCATACAAGCAATTTAGGAGTAAATT 58.803 33.333 0.00 0.00 45.75 1.82
3167 4028 9.975218 AGGAGTAAATTACATAAAACCATCACT 57.025 29.630 5.89 0.00 0.00 3.41
3173 4034 9.927668 AAATTACATAAAACCATCACTTTGAGG 57.072 29.630 0.00 0.00 0.00 3.86
3179 4040 2.338577 CCATCACTTTGAGGGCTAGG 57.661 55.000 0.00 0.00 41.71 3.02
3180 4041 1.561542 CCATCACTTTGAGGGCTAGGT 59.438 52.381 0.00 0.00 41.71 3.08
3181 4042 2.025887 CCATCACTTTGAGGGCTAGGTT 60.026 50.000 0.00 0.00 41.71 3.50
3182 4043 3.562176 CCATCACTTTGAGGGCTAGGTTT 60.562 47.826 0.00 0.00 41.71 3.27
3183 4044 3.140325 TCACTTTGAGGGCTAGGTTTG 57.860 47.619 0.00 0.00 0.00 2.93
3184 4045 1.541588 CACTTTGAGGGCTAGGTTTGC 59.458 52.381 0.00 0.00 0.00 3.68
3185 4046 0.804989 CTTTGAGGGCTAGGTTTGCG 59.195 55.000 0.00 0.00 0.00 4.85
3186 4047 0.398696 TTTGAGGGCTAGGTTTGCGA 59.601 50.000 0.00 0.00 0.00 5.10
3187 4048 0.398696 TTGAGGGCTAGGTTTGCGAA 59.601 50.000 0.00 0.00 0.00 4.70
3188 4049 0.398696 TGAGGGCTAGGTTTGCGAAA 59.601 50.000 0.00 0.00 0.00 3.46
3189 4050 1.202830 TGAGGGCTAGGTTTGCGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
3190 4051 1.883926 GAGGGCTAGGTTTGCGAAAAA 59.116 47.619 0.00 0.00 0.00 1.94
3191 4052 1.611977 AGGGCTAGGTTTGCGAAAAAC 59.388 47.619 0.00 0.00 0.00 2.43
3192 4053 1.338655 GGGCTAGGTTTGCGAAAAACA 59.661 47.619 6.70 0.00 32.04 2.83
3193 4054 2.223852 GGGCTAGGTTTGCGAAAAACAA 60.224 45.455 6.70 0.00 32.04 2.83
3194 4055 3.554129 GGGCTAGGTTTGCGAAAAACAAT 60.554 43.478 6.70 2.22 32.04 2.71
3195 4056 4.321378 GGGCTAGGTTTGCGAAAAACAATA 60.321 41.667 6.70 3.19 32.04 1.90
3196 4057 5.407502 GGCTAGGTTTGCGAAAAACAATAT 58.592 37.500 6.70 0.00 32.04 1.28
3197 4058 5.288472 GGCTAGGTTTGCGAAAAACAATATG 59.712 40.000 6.70 0.00 32.04 1.78
3198 4059 6.090129 GCTAGGTTTGCGAAAAACAATATGA 58.910 36.000 6.70 0.00 32.04 2.15
3199 4060 6.751888 GCTAGGTTTGCGAAAAACAATATGAT 59.248 34.615 6.70 0.00 32.04 2.45
3200 4061 7.913297 GCTAGGTTTGCGAAAAACAATATGATA 59.087 33.333 6.70 0.00 32.04 2.15
3201 4062 9.221775 CTAGGTTTGCGAAAAACAATATGATAC 57.778 33.333 6.70 0.00 32.04 2.24
3202 4063 7.598278 AGGTTTGCGAAAAACAATATGATACA 58.402 30.769 6.70 0.00 32.04 2.29
3203 4064 7.754924 AGGTTTGCGAAAAACAATATGATACAG 59.245 33.333 6.70 0.00 32.04 2.74
3204 4065 7.753132 GGTTTGCGAAAAACAATATGATACAGA 59.247 33.333 0.00 0.00 32.04 3.41
3205 4066 9.289303 GTTTGCGAAAAACAATATGATACAGAT 57.711 29.630 8.72 0.00 0.00 2.90
3206 4067 9.853555 TTTGCGAAAAACAATATGATACAGATT 57.146 25.926 0.00 0.00 0.00 2.40
3207 4068 9.502145 TTGCGAAAAACAATATGATACAGATTC 57.498 29.630 0.00 0.00 0.00 2.52
3208 4069 8.892723 TGCGAAAAACAATATGATACAGATTCT 58.107 29.630 0.00 0.00 0.00 2.40
3209 4070 9.374960 GCGAAAAACAATATGATACAGATTCTC 57.625 33.333 0.00 0.00 0.00 2.87
3229 4090 3.164028 GCAAAAAGCACCACGTCTC 57.836 52.632 0.00 0.00 44.79 3.36
3230 4091 0.657368 GCAAAAAGCACCACGTCTCG 60.657 55.000 0.00 0.00 44.79 4.04
3231 4092 0.657368 CAAAAAGCACCACGTCTCGC 60.657 55.000 0.00 0.00 0.00 5.03
3244 4105 1.896193 CGTCTCGCGTAATTGTTTTGC 59.104 47.619 5.77 0.00 35.54 3.68
3245 4106 2.660631 CGTCTCGCGTAATTGTTTTGCA 60.661 45.455 5.77 0.00 35.54 4.08
3246 4107 3.293262 GTCTCGCGTAATTGTTTTGCAA 58.707 40.909 5.77 0.00 41.89 4.08
3247 4108 3.726730 GTCTCGCGTAATTGTTTTGCAAA 59.273 39.130 8.05 8.05 40.91 3.68
3248 4109 4.205385 GTCTCGCGTAATTGTTTTGCAAAA 59.795 37.500 20.46 20.46 40.91 2.44
3249 4110 4.798907 TCTCGCGTAATTGTTTTGCAAAAA 59.201 33.333 25.40 12.25 40.91 1.94
3250 4111 4.812293 TCGCGTAATTGTTTTGCAAAAAC 58.188 34.783 25.40 17.78 40.91 2.43
3251 4112 3.956920 CGCGTAATTGTTTTGCAAAAACC 59.043 39.130 25.40 14.86 40.91 3.27
3252 4113 4.492570 CGCGTAATTGTTTTGCAAAAACCA 60.493 37.500 25.40 17.22 40.91 3.67
3253 4114 4.726229 GCGTAATTGTTTTGCAAAAACCAC 59.274 37.500 25.40 14.68 40.91 4.16
3254 4115 5.446607 GCGTAATTGTTTTGCAAAAACCACT 60.447 36.000 25.40 11.99 40.91 4.00
3255 4116 5.956645 CGTAATTGTTTTGCAAAAACCACTG 59.043 36.000 25.40 9.88 40.91 3.66
3256 4117 6.183360 CGTAATTGTTTTGCAAAAACCACTGA 60.183 34.615 25.40 6.08 40.91 3.41
3257 4118 6.756299 AATTGTTTTGCAAAAACCACTGAT 57.244 29.167 25.40 8.81 40.91 2.90
3258 4119 5.542616 TTGTTTTGCAAAAACCACTGATG 57.457 34.783 25.40 0.00 33.53 3.07
3259 4120 4.394300 TTGTTTTGCAAAAACCACTGATGG 59.606 37.500 25.40 0.00 42.31 3.51
3260 4121 6.601545 TTGTTTTGCAAAAACCACTGATGGG 61.602 40.000 25.40 0.00 41.50 4.00
3267 4128 2.280389 CCACTGATGGGCGGATCG 60.280 66.667 0.00 0.00 43.04 3.69
3268 4129 2.280389 CACTGATGGGCGGATCGG 60.280 66.667 0.00 0.00 35.19 4.18
3269 4130 3.550431 ACTGATGGGCGGATCGGG 61.550 66.667 2.13 0.00 33.58 5.14
3270 4131 4.996434 CTGATGGGCGGATCGGGC 62.996 72.222 17.31 17.31 0.00 6.13
3278 4139 2.184836 CGGATCGGGCCGTGTTAA 59.815 61.111 27.32 6.22 46.07 2.01
3279 4140 1.881252 CGGATCGGGCCGTGTTAAG 60.881 63.158 27.32 9.96 46.07 1.85
3280 4141 1.219935 GGATCGGGCCGTGTTAAGT 59.780 57.895 27.32 4.27 0.00 2.24
3281 4142 1.087771 GGATCGGGCCGTGTTAAGTG 61.088 60.000 27.32 0.00 0.00 3.16
3282 4143 0.108520 GATCGGGCCGTGTTAAGTGA 60.109 55.000 27.32 2.67 0.00 3.41
3283 4144 0.108329 ATCGGGCCGTGTTAAGTGAG 60.108 55.000 27.32 0.00 0.00 3.51
3284 4145 1.005394 CGGGCCGTGTTAAGTGAGT 60.005 57.895 19.97 0.00 0.00 3.41
3285 4146 0.601841 CGGGCCGTGTTAAGTGAGTT 60.602 55.000 19.97 0.00 0.00 3.01
3286 4147 1.601166 GGGCCGTGTTAAGTGAGTTT 58.399 50.000 0.00 0.00 0.00 2.66
3287 4148 2.769893 GGGCCGTGTTAAGTGAGTTTA 58.230 47.619 0.00 0.00 0.00 2.01
3288 4149 3.340928 GGGCCGTGTTAAGTGAGTTTAT 58.659 45.455 0.00 0.00 0.00 1.40
3289 4150 3.126343 GGGCCGTGTTAAGTGAGTTTATG 59.874 47.826 0.00 0.00 0.00 1.90
3290 4151 3.998341 GGCCGTGTTAAGTGAGTTTATGA 59.002 43.478 0.00 0.00 0.00 2.15
3291 4152 4.142966 GGCCGTGTTAAGTGAGTTTATGAC 60.143 45.833 0.00 0.00 0.00 3.06
3292 4153 4.449743 GCCGTGTTAAGTGAGTTTATGACA 59.550 41.667 0.00 0.00 0.00 3.58
3293 4154 5.614013 GCCGTGTTAAGTGAGTTTATGACAC 60.614 44.000 0.00 0.00 34.41 3.67
3294 4155 5.107220 CCGTGTTAAGTGAGTTTATGACACC 60.107 44.000 0.00 0.00 34.28 4.16
3295 4156 5.107220 CGTGTTAAGTGAGTTTATGACACCC 60.107 44.000 0.00 0.00 34.28 4.61
3296 4157 5.180680 GTGTTAAGTGAGTTTATGACACCCC 59.819 44.000 0.00 0.00 35.47 4.95
3297 4158 5.163184 TGTTAAGTGAGTTTATGACACCCCA 60.163 40.000 0.00 0.00 35.47 4.96
3298 4159 3.703001 AGTGAGTTTATGACACCCCAG 57.297 47.619 0.00 0.00 35.47 4.45
3299 4160 2.305927 AGTGAGTTTATGACACCCCAGG 59.694 50.000 0.00 0.00 35.47 4.45
3300 4161 1.004277 TGAGTTTATGACACCCCAGGC 59.996 52.381 0.00 0.00 0.00 4.85
3301 4162 0.331616 AGTTTATGACACCCCAGGCC 59.668 55.000 0.00 0.00 0.00 5.19
3302 4163 1.029947 GTTTATGACACCCCAGGCCG 61.030 60.000 0.00 0.00 0.00 6.13
3303 4164 2.830186 TTTATGACACCCCAGGCCGC 62.830 60.000 0.00 0.00 0.00 6.53
3332 4193 2.882876 GCAGACGGCCTTAGACGA 59.117 61.111 0.00 0.00 36.11 4.20
3333 4194 1.516603 GCAGACGGCCTTAGACGAC 60.517 63.158 0.00 0.00 36.11 4.34
3334 4195 1.226323 CAGACGGCCTTAGACGACG 60.226 63.158 0.00 0.00 0.00 5.12
3335 4196 2.578981 GACGGCCTTAGACGACGC 60.579 66.667 0.00 0.00 0.00 5.19
3336 4197 3.048941 GACGGCCTTAGACGACGCT 62.049 63.158 0.00 0.00 0.00 5.07
3337 4198 2.579787 CGGCCTTAGACGACGCTG 60.580 66.667 0.00 0.00 0.00 5.18
3338 4199 2.572284 GGCCTTAGACGACGCTGT 59.428 61.111 0.00 0.00 0.00 4.40
3339 4200 1.080025 GGCCTTAGACGACGCTGTT 60.080 57.895 0.00 0.00 0.00 3.16
3340 4201 1.077089 GGCCTTAGACGACGCTGTTC 61.077 60.000 0.00 0.00 0.00 3.18
3341 4202 1.403972 GCCTTAGACGACGCTGTTCG 61.404 60.000 0.00 0.00 44.87 3.95
3342 4203 0.797249 CCTTAGACGACGCTGTTCGG 60.797 60.000 0.00 0.00 43.58 4.30
3343 4204 0.109873 CTTAGACGACGCTGTTCGGT 60.110 55.000 0.00 0.00 43.58 4.69
3344 4205 0.311790 TTAGACGACGCTGTTCGGTT 59.688 50.000 0.00 0.00 43.58 4.44
3345 4206 0.110056 TAGACGACGCTGTTCGGTTC 60.110 55.000 0.00 0.00 43.58 3.62
3346 4207 1.371389 GACGACGCTGTTCGGTTCT 60.371 57.895 0.00 0.00 43.58 3.01
3347 4208 0.110056 GACGACGCTGTTCGGTTCTA 60.110 55.000 0.00 0.00 43.58 2.10
3348 4209 0.109873 ACGACGCTGTTCGGTTCTAG 60.110 55.000 0.00 0.00 43.58 2.43
3349 4210 1.403972 CGACGCTGTTCGGTTCTAGC 61.404 60.000 0.00 0.00 43.86 3.42
3350 4211 0.388134 GACGCTGTTCGGTTCTAGCA 60.388 55.000 0.00 0.00 43.86 3.49
3351 4212 0.388649 ACGCTGTTCGGTTCTAGCAG 60.389 55.000 0.00 0.00 43.86 4.24
3352 4213 0.388649 CGCTGTTCGGTTCTAGCAGT 60.389 55.000 0.00 0.00 35.98 4.40
3353 4214 1.351153 GCTGTTCGGTTCTAGCAGTC 58.649 55.000 0.00 0.00 36.24 3.51
3354 4215 1.336887 GCTGTTCGGTTCTAGCAGTCA 60.337 52.381 0.00 0.00 36.24 3.41
3355 4216 2.866460 GCTGTTCGGTTCTAGCAGTCAA 60.866 50.000 0.00 0.00 36.24 3.18
3356 4217 3.390135 CTGTTCGGTTCTAGCAGTCAAA 58.610 45.455 0.00 0.00 0.00 2.69
3357 4218 3.799366 TGTTCGGTTCTAGCAGTCAAAA 58.201 40.909 0.00 0.00 0.00 2.44
3358 4219 3.807622 TGTTCGGTTCTAGCAGTCAAAAG 59.192 43.478 0.00 0.00 0.00 2.27
3359 4220 4.056050 GTTCGGTTCTAGCAGTCAAAAGA 58.944 43.478 0.00 0.00 0.00 2.52
3360 4221 3.914312 TCGGTTCTAGCAGTCAAAAGAG 58.086 45.455 0.00 0.00 0.00 2.85
3361 4222 2.413453 CGGTTCTAGCAGTCAAAAGAGC 59.587 50.000 0.00 0.00 0.00 4.09
3362 4223 2.413453 GGTTCTAGCAGTCAAAAGAGCG 59.587 50.000 0.00 0.00 0.00 5.03
3363 4224 3.318017 GTTCTAGCAGTCAAAAGAGCGA 58.682 45.455 0.00 0.00 0.00 4.93
3364 4225 3.660501 TCTAGCAGTCAAAAGAGCGAA 57.339 42.857 0.00 0.00 0.00 4.70
3365 4226 3.318017 TCTAGCAGTCAAAAGAGCGAAC 58.682 45.455 0.00 0.00 0.00 3.95
3366 4227 1.230324 AGCAGTCAAAAGAGCGAACC 58.770 50.000 0.00 0.00 0.00 3.62
3367 4228 0.110644 GCAGTCAAAAGAGCGAACCG 60.111 55.000 0.00 0.00 0.00 4.44
3368 4229 1.217882 CAGTCAAAAGAGCGAACCGT 58.782 50.000 0.00 0.00 0.00 4.83
3369 4230 1.597663 CAGTCAAAAGAGCGAACCGTT 59.402 47.619 0.00 0.00 0.00 4.44
3370 4231 2.798283 CAGTCAAAAGAGCGAACCGTTA 59.202 45.455 0.00 0.00 0.00 3.18
3371 4232 2.798847 AGTCAAAAGAGCGAACCGTTAC 59.201 45.455 0.00 0.00 0.00 2.50
3372 4233 2.798847 GTCAAAAGAGCGAACCGTTACT 59.201 45.455 0.00 0.00 0.00 2.24
3373 4234 3.054878 TCAAAAGAGCGAACCGTTACTC 58.945 45.455 5.88 5.88 0.00 2.59
3374 4235 2.075979 AAAGAGCGAACCGTTACTCC 57.924 50.000 9.23 0.00 0.00 3.85
3375 4236 1.254954 AAGAGCGAACCGTTACTCCT 58.745 50.000 9.23 0.00 0.00 3.69
3376 4237 1.254954 AGAGCGAACCGTTACTCCTT 58.745 50.000 9.23 0.00 0.00 3.36
3377 4238 2.440409 AGAGCGAACCGTTACTCCTTA 58.560 47.619 9.23 0.00 0.00 2.69
3378 4239 3.022406 AGAGCGAACCGTTACTCCTTAT 58.978 45.455 9.23 0.00 0.00 1.73
3379 4240 3.066481 AGAGCGAACCGTTACTCCTTATC 59.934 47.826 9.23 0.00 0.00 1.75
3380 4241 2.100418 AGCGAACCGTTACTCCTTATCC 59.900 50.000 0.00 0.00 0.00 2.59
3381 4242 2.159198 GCGAACCGTTACTCCTTATCCA 60.159 50.000 0.00 0.00 0.00 3.41
3382 4243 3.442100 CGAACCGTTACTCCTTATCCAC 58.558 50.000 0.00 0.00 0.00 4.02
3383 4244 3.129988 CGAACCGTTACTCCTTATCCACT 59.870 47.826 0.00 0.00 0.00 4.00
3384 4245 4.381292 CGAACCGTTACTCCTTATCCACTT 60.381 45.833 0.00 0.00 0.00 3.16
3385 4246 5.485620 GAACCGTTACTCCTTATCCACTTT 58.514 41.667 0.00 0.00 0.00 2.66
3386 4247 4.828829 ACCGTTACTCCTTATCCACTTTG 58.171 43.478 0.00 0.00 0.00 2.77
3387 4248 3.621715 CCGTTACTCCTTATCCACTTTGC 59.378 47.826 0.00 0.00 0.00 3.68
3388 4249 4.504858 CGTTACTCCTTATCCACTTTGCT 58.495 43.478 0.00 0.00 0.00 3.91
3389 4250 4.567159 CGTTACTCCTTATCCACTTTGCTC 59.433 45.833 0.00 0.00 0.00 4.26
3390 4251 5.488341 GTTACTCCTTATCCACTTTGCTCA 58.512 41.667 0.00 0.00 0.00 4.26
3391 4252 3.944087 ACTCCTTATCCACTTTGCTCAC 58.056 45.455 0.00 0.00 0.00 3.51
3392 4253 3.584848 ACTCCTTATCCACTTTGCTCACT 59.415 43.478 0.00 0.00 0.00 3.41
3393 4254 4.187694 CTCCTTATCCACTTTGCTCACTC 58.812 47.826 0.00 0.00 0.00 3.51
3394 4255 2.932614 CCTTATCCACTTTGCTCACTCG 59.067 50.000 0.00 0.00 0.00 4.18
3395 4256 2.010145 TATCCACTTTGCTCACTCGC 57.990 50.000 0.00 0.00 0.00 5.03
3396 4257 0.322975 ATCCACTTTGCTCACTCGCT 59.677 50.000 0.00 0.00 0.00 4.93
3397 4258 0.319900 TCCACTTTGCTCACTCGCTC 60.320 55.000 0.00 0.00 0.00 5.03
3398 4259 0.601046 CCACTTTGCTCACTCGCTCA 60.601 55.000 0.00 0.00 0.00 4.26
3399 4260 1.436600 CACTTTGCTCACTCGCTCAT 58.563 50.000 0.00 0.00 0.00 2.90
3400 4261 1.392853 CACTTTGCTCACTCGCTCATC 59.607 52.381 0.00 0.00 0.00 2.92
3401 4262 0.644331 CTTTGCTCACTCGCTCATCG 59.356 55.000 0.00 0.00 40.15 3.84
3402 4263 1.354337 TTTGCTCACTCGCTCATCGC 61.354 55.000 0.00 0.00 38.27 4.58
3403 4264 2.103934 GCTCACTCGCTCATCGCT 59.896 61.111 0.00 0.00 38.27 4.93
3404 4265 1.943693 GCTCACTCGCTCATCGCTC 60.944 63.158 0.00 0.00 38.27 5.03
3405 4266 1.653835 CTCACTCGCTCATCGCTCG 60.654 63.158 0.00 0.00 38.27 5.03
3406 4267 3.318555 CACTCGCTCATCGCTCGC 61.319 66.667 0.00 0.00 38.27 5.03
3407 4268 3.513438 ACTCGCTCATCGCTCGCT 61.513 61.111 0.00 0.00 38.27 4.93
3408 4269 2.725450 CTCGCTCATCGCTCGCTC 60.725 66.667 0.00 0.00 38.27 5.03
3409 4270 3.460854 CTCGCTCATCGCTCGCTCA 62.461 63.158 0.00 0.00 38.27 4.26
3410 4271 2.354422 CGCTCATCGCTCGCTCAT 60.354 61.111 0.00 0.00 36.13 2.90
3411 4272 2.363555 CGCTCATCGCTCGCTCATC 61.364 63.158 0.00 0.00 36.13 2.92
3412 4273 1.007502 GCTCATCGCTCGCTCATCT 60.008 57.895 0.00 0.00 35.14 2.90
3413 4274 1.003262 GCTCATCGCTCGCTCATCTC 61.003 60.000 0.00 0.00 35.14 2.75
3414 4275 0.592637 CTCATCGCTCGCTCATCTCT 59.407 55.000 0.00 0.00 0.00 3.10
3415 4276 0.590682 TCATCGCTCGCTCATCTCTC 59.409 55.000 0.00 0.00 0.00 3.20
3416 4277 0.725451 CATCGCTCGCTCATCTCTCG 60.725 60.000 0.00 0.00 0.00 4.04
3417 4278 2.456594 ATCGCTCGCTCATCTCTCGC 62.457 60.000 0.00 0.00 0.00 5.03
3418 4279 2.721231 GCTCGCTCATCTCTCGCT 59.279 61.111 0.00 0.00 0.00 4.93
3419 4280 1.370414 GCTCGCTCATCTCTCGCTC 60.370 63.158 0.00 0.00 0.00 5.03
3420 4281 1.785041 GCTCGCTCATCTCTCGCTCT 61.785 60.000 0.00 0.00 0.00 4.09
3421 4282 0.235665 CTCGCTCATCTCTCGCTCTC 59.764 60.000 0.00 0.00 0.00 3.20
3422 4283 0.179059 TCGCTCATCTCTCGCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
3423 4284 0.662619 CGCTCATCTCTCGCTCTCTT 59.337 55.000 0.00 0.00 0.00 2.85
3424 4285 1.334059 CGCTCATCTCTCGCTCTCTTC 60.334 57.143 0.00 0.00 0.00 2.87
3425 4286 1.949525 GCTCATCTCTCGCTCTCTTCT 59.050 52.381 0.00 0.00 0.00 2.85
3426 4287 3.138304 GCTCATCTCTCGCTCTCTTCTA 58.862 50.000 0.00 0.00 0.00 2.10
3427 4288 3.187227 GCTCATCTCTCGCTCTCTTCTAG 59.813 52.174 0.00 0.00 0.00 2.43
3428 4289 3.138304 TCATCTCTCGCTCTCTTCTAGC 58.862 50.000 0.00 0.00 36.60 3.42
3429 4290 3.141398 CATCTCTCGCTCTCTTCTAGCT 58.859 50.000 0.00 0.00 37.85 3.32
3430 4291 2.833794 TCTCTCGCTCTCTTCTAGCTC 58.166 52.381 0.00 0.00 37.85 4.09
3431 4292 2.434336 TCTCTCGCTCTCTTCTAGCTCT 59.566 50.000 0.00 0.00 37.85 4.09
3432 4293 2.802816 CTCTCGCTCTCTTCTAGCTCTC 59.197 54.545 0.00 0.00 37.85 3.20
3433 4294 1.526887 CTCGCTCTCTTCTAGCTCTCG 59.473 57.143 0.00 0.00 37.85 4.04
3434 4295 0.041312 CGCTCTCTTCTAGCTCTCGC 60.041 60.000 0.00 0.00 37.85 5.03
3436 4297 2.489971 GCTCTCTTCTAGCTCTCGCTA 58.510 52.381 0.00 0.00 46.79 4.26
3437 4298 3.074412 GCTCTCTTCTAGCTCTCGCTAT 58.926 50.000 0.00 0.00 46.93 2.97
3438 4299 3.120199 GCTCTCTTCTAGCTCTCGCTATG 60.120 52.174 0.00 0.00 46.93 2.23
3439 4300 4.065088 CTCTCTTCTAGCTCTCGCTATGT 58.935 47.826 0.00 0.00 46.93 2.29
3440 4301 4.456535 TCTCTTCTAGCTCTCGCTATGTT 58.543 43.478 0.00 0.00 46.93 2.71
3441 4302 4.513692 TCTCTTCTAGCTCTCGCTATGTTC 59.486 45.833 0.00 0.00 46.93 3.18
3442 4303 4.456535 TCTTCTAGCTCTCGCTATGTTCT 58.543 43.478 0.00 0.00 46.93 3.01
3443 4304 4.884744 TCTTCTAGCTCTCGCTATGTTCTT 59.115 41.667 0.00 0.00 46.93 2.52
3444 4305 4.560136 TCTAGCTCTCGCTATGTTCTTG 57.440 45.455 0.00 0.00 46.93 3.02
3445 4306 2.593346 AGCTCTCGCTATGTTCTTGG 57.407 50.000 0.00 0.00 46.79 3.61
3446 4307 0.933796 GCTCTCGCTATGTTCTTGGC 59.066 55.000 0.00 0.00 0.00 4.52
3447 4308 1.576356 CTCTCGCTATGTTCTTGGCC 58.424 55.000 0.00 0.00 0.00 5.36
3448 4309 0.179111 TCTCGCTATGTTCTTGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
3449 4310 0.460284 CTCGCTATGTTCTTGGCCGT 60.460 55.000 0.00 0.00 0.00 5.68
3450 4311 0.459585 TCGCTATGTTCTTGGCCGTC 60.460 55.000 0.00 0.00 0.00 4.79
3451 4312 1.752501 CGCTATGTTCTTGGCCGTCG 61.753 60.000 0.00 0.00 0.00 5.12
3452 4313 2.006772 CTATGTTCTTGGCCGTCGC 58.993 57.895 0.00 0.00 0.00 5.19
3453 4314 0.739462 CTATGTTCTTGGCCGTCGCA 60.739 55.000 0.00 0.00 36.38 5.10
3454 4315 0.107897 TATGTTCTTGGCCGTCGCAT 60.108 50.000 0.00 1.48 36.38 4.73
3455 4316 1.369091 ATGTTCTTGGCCGTCGCATC 61.369 55.000 0.00 0.00 36.38 3.91
3456 4317 2.435938 TTCTTGGCCGTCGCATCC 60.436 61.111 0.00 0.00 36.38 3.51
3457 4318 4.812476 TCTTGGCCGTCGCATCCG 62.812 66.667 0.00 0.00 36.38 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 0.111253 CAAGAACCTGGGCTTCACCT 59.889 55.000 0.00 0.00 39.10 4.00
382 1115 1.959085 CCCAAAGCGCAATGTGAGT 59.041 52.632 11.47 0.00 0.00 3.41
677 1497 1.191647 GTCGAACAGAAACGCACGAAT 59.808 47.619 0.00 0.00 0.00 3.34
687 1507 1.655885 TTCGCTCGGTCGAACAGAA 59.344 52.632 0.00 0.00 42.68 3.02
1043 1884 4.158394 TGCTCCAAATTGAAATGCTACCTC 59.842 41.667 0.00 0.00 0.00 3.85
1074 1915 4.070716 GGATAGAATCCCAATGAGCACAG 58.929 47.826 0.00 0.00 43.88 3.66
1298 2139 4.991056 TGTAAGCAGACTTTGTAGAGCAAG 59.009 41.667 0.00 0.00 38.47 4.01
1347 2188 1.134907 GCAGGCACATTTCTGGGATTG 60.135 52.381 0.00 0.00 0.00 2.67
1447 2289 5.281314 AGCCTTTCTAAGTAATCTCCAGGA 58.719 41.667 0.00 0.00 0.00 3.86
1601 2443 4.543590 TCAGATCTGAGAAACCAAGGAC 57.456 45.455 21.67 0.00 34.14 3.85
1832 2674 4.875544 TGCTTATTACGAAGGCATGAAC 57.124 40.909 0.00 0.00 0.00 3.18
1918 2760 5.048364 TCGGTCCAACAATTAACAAATCAGG 60.048 40.000 0.00 0.00 0.00 3.86
2211 3055 4.731313 AGAGGAATCCAAGGTGTTTCTT 57.269 40.909 0.61 0.00 0.00 2.52
2722 3569 4.758688 TGAAGCAGCAATTAGATCGAGAA 58.241 39.130 0.00 0.00 0.00 2.87
2827 3674 1.892329 GCAAAGGAGCAAGAATCCCCA 60.892 52.381 0.00 0.00 37.57 4.96
2916 3777 7.317390 TCAGCTCAACGTCATAGTACATAAAA 58.683 34.615 0.00 0.00 0.00 1.52
2986 3847 5.290885 CCTGAAAAAGAAAACGAAAACCCAG 59.709 40.000 0.00 0.00 0.00 4.45
2987 3848 5.047235 TCCTGAAAAAGAAAACGAAAACCCA 60.047 36.000 0.00 0.00 0.00 4.51
2988 3849 5.412640 TCCTGAAAAAGAAAACGAAAACCC 58.587 37.500 0.00 0.00 0.00 4.11
2989 3850 6.252869 GTCTCCTGAAAAAGAAAACGAAAACC 59.747 38.462 0.00 0.00 0.00 3.27
2990 3851 6.804783 TGTCTCCTGAAAAAGAAAACGAAAAC 59.195 34.615 0.00 0.00 0.00 2.43
2991 3852 6.915349 TGTCTCCTGAAAAAGAAAACGAAAA 58.085 32.000 0.00 0.00 0.00 2.29
2992 3853 6.503589 TGTCTCCTGAAAAAGAAAACGAAA 57.496 33.333 0.00 0.00 0.00 3.46
2993 3854 6.317642 TGATGTCTCCTGAAAAAGAAAACGAA 59.682 34.615 0.00 0.00 0.00 3.85
2994 3855 5.820423 TGATGTCTCCTGAAAAAGAAAACGA 59.180 36.000 0.00 0.00 0.00 3.85
2995 3856 6.060028 TGATGTCTCCTGAAAAAGAAAACG 57.940 37.500 0.00 0.00 0.00 3.60
2996 3857 6.865205 CCATGATGTCTCCTGAAAAAGAAAAC 59.135 38.462 0.00 0.00 0.00 2.43
2997 3858 6.777091 TCCATGATGTCTCCTGAAAAAGAAAA 59.223 34.615 0.00 0.00 0.00 2.29
2998 3859 6.306199 TCCATGATGTCTCCTGAAAAAGAAA 58.694 36.000 0.00 0.00 0.00 2.52
2999 3860 5.879763 TCCATGATGTCTCCTGAAAAAGAA 58.120 37.500 0.00 0.00 0.00 2.52
3000 3861 5.503634 TCCATGATGTCTCCTGAAAAAGA 57.496 39.130 0.00 0.00 0.00 2.52
3001 3862 5.474532 TGTTCCATGATGTCTCCTGAAAAAG 59.525 40.000 0.00 0.00 0.00 2.27
3002 3863 5.384336 TGTTCCATGATGTCTCCTGAAAAA 58.616 37.500 0.00 0.00 0.00 1.94
3003 3864 4.984295 TGTTCCATGATGTCTCCTGAAAA 58.016 39.130 0.00 0.00 0.00 2.29
3004 3865 4.639078 TGTTCCATGATGTCTCCTGAAA 57.361 40.909 0.00 0.00 0.00 2.69
3005 3866 4.639078 TTGTTCCATGATGTCTCCTGAA 57.361 40.909 0.00 0.00 0.00 3.02
3006 3867 4.639078 TTTGTTCCATGATGTCTCCTGA 57.361 40.909 0.00 0.00 0.00 3.86
3007 3868 4.380233 GCTTTTGTTCCATGATGTCTCCTG 60.380 45.833 0.00 0.00 0.00 3.86
3008 3869 3.760684 GCTTTTGTTCCATGATGTCTCCT 59.239 43.478 0.00 0.00 0.00 3.69
3009 3870 3.760684 AGCTTTTGTTCCATGATGTCTCC 59.239 43.478 0.00 0.00 0.00 3.71
3010 3871 5.382618 AAGCTTTTGTTCCATGATGTCTC 57.617 39.130 0.00 0.00 0.00 3.36
3011 3872 5.796424 AAAGCTTTTGTTCCATGATGTCT 57.204 34.783 5.69 0.00 0.00 3.41
3012 3873 5.984926 TGAAAAGCTTTTGTTCCATGATGTC 59.015 36.000 28.42 10.08 0.00 3.06
3013 3874 5.754890 GTGAAAAGCTTTTGTTCCATGATGT 59.245 36.000 28.42 0.00 0.00 3.06
3014 3875 5.178067 GGTGAAAAGCTTTTGTTCCATGATG 59.822 40.000 28.42 0.00 0.00 3.07
3015 3876 5.299949 GGTGAAAAGCTTTTGTTCCATGAT 58.700 37.500 28.42 0.31 0.00 2.45
3016 3877 4.442753 GGGTGAAAAGCTTTTGTTCCATGA 60.443 41.667 28.42 0.00 0.00 3.07
3017 3878 3.809279 GGGTGAAAAGCTTTTGTTCCATG 59.191 43.478 28.42 0.00 0.00 3.66
3018 3879 3.492482 CGGGTGAAAAGCTTTTGTTCCAT 60.492 43.478 28.42 2.76 0.00 3.41
3019 3880 2.159170 CGGGTGAAAAGCTTTTGTTCCA 60.159 45.455 28.42 16.75 0.00 3.53
3020 3881 2.469826 CGGGTGAAAAGCTTTTGTTCC 58.530 47.619 28.42 23.07 0.00 3.62
3021 3882 2.159156 ACCGGGTGAAAAGCTTTTGTTC 60.159 45.455 28.42 15.06 0.00 3.18
3022 3883 1.828595 ACCGGGTGAAAAGCTTTTGTT 59.171 42.857 28.42 5.25 0.00 2.83
3023 3884 1.480789 ACCGGGTGAAAAGCTTTTGT 58.519 45.000 28.42 15.65 0.00 2.83
3024 3885 2.595124 AACCGGGTGAAAAGCTTTTG 57.405 45.000 28.42 15.02 0.00 2.44
3025 3886 2.235155 ACAAACCGGGTGAAAAGCTTTT 59.765 40.909 24.08 24.08 0.00 2.27
3026 3887 1.828595 ACAAACCGGGTGAAAAGCTTT 59.171 42.857 5.69 5.69 0.00 3.51
3027 3888 1.136110 CACAAACCGGGTGAAAAGCTT 59.864 47.619 13.82 0.00 38.54 3.74
3028 3889 0.744281 CACAAACCGGGTGAAAAGCT 59.256 50.000 13.82 0.00 38.54 3.74
3029 3890 0.741915 TCACAAACCGGGTGAAAAGC 59.258 50.000 13.82 0.00 41.96 3.51
3034 3895 0.107081 ATCGTTCACAAACCGGGTGA 59.893 50.000 13.82 10.81 43.12 4.02
3035 3896 0.237235 CATCGTTCACAAACCGGGTG 59.763 55.000 6.32 6.06 37.60 4.61
3036 3897 0.887387 CCATCGTTCACAAACCGGGT 60.887 55.000 6.32 0.00 31.27 5.28
3037 3898 0.604243 TCCATCGTTCACAAACCGGG 60.604 55.000 6.32 0.00 31.27 5.73
3038 3899 1.396996 GATCCATCGTTCACAAACCGG 59.603 52.381 0.00 0.00 31.27 5.28
3039 3900 1.060553 CGATCCATCGTTCACAAACCG 59.939 52.381 0.55 0.00 44.74 4.44
3040 3901 2.806288 CGATCCATCGTTCACAAACC 57.194 50.000 0.55 0.00 44.74 3.27
3051 3912 1.728971 GCACGGATGATTCGATCCATC 59.271 52.381 15.29 15.29 42.01 3.51
3052 3913 1.800805 GCACGGATGATTCGATCCAT 58.199 50.000 0.00 2.07 42.01 3.41
3053 3914 0.597377 CGCACGGATGATTCGATCCA 60.597 55.000 0.00 0.00 42.01 3.41
3054 3915 1.891060 GCGCACGGATGATTCGATCC 61.891 60.000 0.30 0.00 38.93 3.36
3055 3916 0.941463 AGCGCACGGATGATTCGATC 60.941 55.000 11.47 0.00 0.00 3.69
3056 3917 1.068083 AGCGCACGGATGATTCGAT 59.932 52.632 11.47 0.00 0.00 3.59
3057 3918 1.878069 CAGCGCACGGATGATTCGA 60.878 57.895 11.47 0.00 32.47 3.71
3058 3919 2.082437 GACAGCGCACGGATGATTCG 62.082 60.000 11.47 0.00 35.55 3.34
3059 3920 1.638467 GACAGCGCACGGATGATTC 59.362 57.895 11.47 0.00 35.55 2.52
3060 3921 2.167219 CGACAGCGCACGGATGATT 61.167 57.895 11.47 0.00 35.55 2.57
3061 3922 2.000215 TACGACAGCGCACGGATGAT 62.000 55.000 21.05 6.74 42.48 2.45
3062 3923 2.000215 ATACGACAGCGCACGGATGA 62.000 55.000 21.05 7.92 42.48 2.92
3063 3924 1.588932 ATACGACAGCGCACGGATG 60.589 57.895 21.05 9.00 42.48 3.51
3064 3925 1.588932 CATACGACAGCGCACGGAT 60.589 57.895 21.05 16.88 42.48 4.18
3065 3926 2.202557 CATACGACAGCGCACGGA 60.203 61.111 21.05 15.55 42.48 4.69
3066 3927 3.913573 GCATACGACAGCGCACGG 61.914 66.667 21.05 9.01 42.48 4.94
3067 3928 3.130424 CTGCATACGACAGCGCACG 62.130 63.158 11.47 15.05 42.48 5.34
3068 3929 1.746727 CTCTGCATACGACAGCGCAC 61.747 60.000 11.47 0.00 42.48 5.34
3069 3930 1.517039 CTCTGCATACGACAGCGCA 60.517 57.895 11.47 0.00 42.48 6.09
3070 3931 2.864931 GCTCTGCATACGACAGCGC 61.865 63.158 0.00 0.00 42.48 5.92
3071 3932 1.477826 CTGCTCTGCATACGACAGCG 61.478 60.000 0.00 0.00 38.13 5.18
3072 3933 0.459237 ACTGCTCTGCATACGACAGC 60.459 55.000 0.00 0.00 38.13 4.40
3073 3934 2.001812 AACTGCTCTGCATACGACAG 57.998 50.000 0.00 0.00 38.13 3.51
3074 3935 2.337583 GAAACTGCTCTGCATACGACA 58.662 47.619 0.00 0.00 38.13 4.35
3075 3936 1.321743 CGAAACTGCTCTGCATACGAC 59.678 52.381 0.00 0.00 38.13 4.34
3076 3937 1.201414 TCGAAACTGCTCTGCATACGA 59.799 47.619 0.00 0.00 38.13 3.43
3077 3938 1.629013 TCGAAACTGCTCTGCATACG 58.371 50.000 0.00 0.00 38.13 3.06
3078 3939 3.190079 TCATCGAAACTGCTCTGCATAC 58.810 45.455 0.00 0.00 38.13 2.39
3079 3940 3.525268 TCATCGAAACTGCTCTGCATA 57.475 42.857 0.00 0.00 38.13 3.14
3080 3941 2.391616 TCATCGAAACTGCTCTGCAT 57.608 45.000 0.00 0.00 38.13 3.96
3081 3942 2.168326 TTCATCGAAACTGCTCTGCA 57.832 45.000 0.00 0.00 36.92 4.41
3082 3943 2.844281 GTTTCATCGAAACTGCTCTGC 58.156 47.619 11.42 0.00 45.65 4.26
3114 3975 4.093011 TGCTTGTATGGCCCTGTATTTTT 58.907 39.130 0.00 0.00 0.00 1.94
3115 3976 3.707316 TGCTTGTATGGCCCTGTATTTT 58.293 40.909 0.00 0.00 0.00 1.82
3116 3977 3.380471 TGCTTGTATGGCCCTGTATTT 57.620 42.857 0.00 0.00 0.00 1.40
3117 3978 3.380471 TTGCTTGTATGGCCCTGTATT 57.620 42.857 0.00 0.00 0.00 1.89
3118 3979 3.600448 ATTGCTTGTATGGCCCTGTAT 57.400 42.857 0.00 0.00 0.00 2.29
3119 3980 3.380471 AATTGCTTGTATGGCCCTGTA 57.620 42.857 0.00 0.00 0.00 2.74
3120 3981 2.236489 AATTGCTTGTATGGCCCTGT 57.764 45.000 0.00 0.00 0.00 4.00
3121 3982 3.068590 CCTAAATTGCTTGTATGGCCCTG 59.931 47.826 0.00 0.00 0.00 4.45
3122 3983 3.052944 TCCTAAATTGCTTGTATGGCCCT 60.053 43.478 0.00 0.00 0.00 5.19
3123 3984 3.295973 TCCTAAATTGCTTGTATGGCCC 58.704 45.455 0.00 0.00 0.00 5.80
3124 3985 3.954258 ACTCCTAAATTGCTTGTATGGCC 59.046 43.478 0.00 0.00 0.00 5.36
3125 3986 6.693315 TTACTCCTAAATTGCTTGTATGGC 57.307 37.500 0.00 0.00 0.00 4.40
3141 4002 9.975218 AGTGATGGTTTTATGTAATTTACTCCT 57.025 29.630 7.99 0.00 0.00 3.69
3147 4008 9.927668 CCTCAAAGTGATGGTTTTATGTAATTT 57.072 29.630 0.00 0.00 0.00 1.82
3148 4009 8.531146 CCCTCAAAGTGATGGTTTTATGTAATT 58.469 33.333 0.00 0.00 29.02 1.40
3149 4010 7.363793 GCCCTCAAAGTGATGGTTTTATGTAAT 60.364 37.037 2.18 0.00 35.03 1.89
3150 4011 6.071616 GCCCTCAAAGTGATGGTTTTATGTAA 60.072 38.462 2.18 0.00 35.03 2.41
3151 4012 5.417580 GCCCTCAAAGTGATGGTTTTATGTA 59.582 40.000 2.18 0.00 35.03 2.29
3152 4013 4.220602 GCCCTCAAAGTGATGGTTTTATGT 59.779 41.667 2.18 0.00 35.03 2.29
3153 4014 4.463891 AGCCCTCAAAGTGATGGTTTTATG 59.536 41.667 2.18 0.00 35.03 1.90
3154 4015 4.677182 AGCCCTCAAAGTGATGGTTTTAT 58.323 39.130 2.18 0.00 35.03 1.40
3155 4016 4.112634 AGCCCTCAAAGTGATGGTTTTA 57.887 40.909 2.18 0.00 35.03 1.52
3156 4017 2.962859 AGCCCTCAAAGTGATGGTTTT 58.037 42.857 2.18 0.00 35.03 2.43
3157 4018 2.683211 AGCCCTCAAAGTGATGGTTT 57.317 45.000 2.18 0.00 35.03 3.27
3158 4019 2.025887 CCTAGCCCTCAAAGTGATGGTT 60.026 50.000 2.18 0.00 35.03 3.67
3159 4020 1.561542 CCTAGCCCTCAAAGTGATGGT 59.438 52.381 2.18 0.00 35.03 3.55
3160 4021 1.561542 ACCTAGCCCTCAAAGTGATGG 59.438 52.381 0.00 0.00 35.58 3.51
3161 4022 3.356529 AACCTAGCCCTCAAAGTGATG 57.643 47.619 0.00 0.00 0.00 3.07
3162 4023 3.690460 CAAACCTAGCCCTCAAAGTGAT 58.310 45.455 0.00 0.00 0.00 3.06
3163 4024 2.814097 GCAAACCTAGCCCTCAAAGTGA 60.814 50.000 0.00 0.00 0.00 3.41
3164 4025 1.541588 GCAAACCTAGCCCTCAAAGTG 59.458 52.381 0.00 0.00 0.00 3.16
3165 4026 1.882352 CGCAAACCTAGCCCTCAAAGT 60.882 52.381 0.00 0.00 0.00 2.66
3166 4027 0.804989 CGCAAACCTAGCCCTCAAAG 59.195 55.000 0.00 0.00 0.00 2.77
3167 4028 0.398696 TCGCAAACCTAGCCCTCAAA 59.601 50.000 0.00 0.00 0.00 2.69
3168 4029 0.398696 TTCGCAAACCTAGCCCTCAA 59.601 50.000 0.00 0.00 0.00 3.02
3169 4030 0.398696 TTTCGCAAACCTAGCCCTCA 59.601 50.000 0.00 0.00 0.00 3.86
3170 4031 1.530323 TTTTCGCAAACCTAGCCCTC 58.470 50.000 0.00 0.00 0.00 4.30
3171 4032 1.611977 GTTTTTCGCAAACCTAGCCCT 59.388 47.619 0.00 0.00 0.00 5.19
3172 4033 1.338655 TGTTTTTCGCAAACCTAGCCC 59.661 47.619 7.37 0.00 0.00 5.19
3173 4034 2.785713 TGTTTTTCGCAAACCTAGCC 57.214 45.000 7.37 0.00 0.00 3.93
3174 4035 6.090129 TCATATTGTTTTTCGCAAACCTAGC 58.910 36.000 7.37 0.00 0.00 3.42
3175 4036 9.221775 GTATCATATTGTTTTTCGCAAACCTAG 57.778 33.333 7.37 0.00 0.00 3.02
3176 4037 8.731605 TGTATCATATTGTTTTTCGCAAACCTA 58.268 29.630 7.37 1.71 0.00 3.08
3177 4038 7.598278 TGTATCATATTGTTTTTCGCAAACCT 58.402 30.769 7.37 0.00 0.00 3.50
3178 4039 7.753132 TCTGTATCATATTGTTTTTCGCAAACC 59.247 33.333 7.37 0.00 0.00 3.27
3179 4040 8.667987 TCTGTATCATATTGTTTTTCGCAAAC 57.332 30.769 3.73 3.73 0.00 2.93
3180 4041 9.853555 AATCTGTATCATATTGTTTTTCGCAAA 57.146 25.926 0.00 0.00 0.00 3.68
3181 4042 9.502145 GAATCTGTATCATATTGTTTTTCGCAA 57.498 29.630 0.00 0.00 0.00 4.85
3182 4043 8.892723 AGAATCTGTATCATATTGTTTTTCGCA 58.107 29.630 0.00 0.00 0.00 5.10
3183 4044 9.374960 GAGAATCTGTATCATATTGTTTTTCGC 57.625 33.333 0.00 0.00 0.00 4.70
3211 4072 0.657368 CGAGACGTGGTGCTTTTTGC 60.657 55.000 0.00 0.00 43.25 3.68
3212 4073 0.657368 GCGAGACGTGGTGCTTTTTG 60.657 55.000 0.00 0.00 0.00 2.44
3213 4074 1.647084 GCGAGACGTGGTGCTTTTT 59.353 52.632 0.00 0.00 0.00 1.94
3214 4075 2.594962 CGCGAGACGTGGTGCTTTT 61.595 57.895 0.00 0.00 36.87 2.27
3215 4076 3.036084 CGCGAGACGTGGTGCTTT 61.036 61.111 0.00 0.00 36.87 3.51
3223 4084 6.533975 TTGCAAAACAATTACGCGAGACGT 62.534 41.667 15.93 0.00 45.92 4.34
3224 4085 4.141637 TTGCAAAACAATTACGCGAGACG 61.142 43.478 15.93 0.00 39.93 4.18
3225 4086 2.911120 TGCAAAACAATTACGCGAGAC 58.089 42.857 15.93 0.00 0.00 3.36
3226 4087 3.610786 TTGCAAAACAATTACGCGAGA 57.389 38.095 15.93 0.00 31.73 4.04
3227 4088 4.684193 TTTTGCAAAACAATTACGCGAG 57.316 36.364 20.46 0.00 38.31 5.03
3228 4089 4.259850 GGTTTTTGCAAAACAATTACGCGA 60.260 37.500 23.79 2.87 38.31 5.87
3229 4090 3.956920 GGTTTTTGCAAAACAATTACGCG 59.043 39.130 23.79 3.53 38.31 6.01
3230 4091 4.726229 GTGGTTTTTGCAAAACAATTACGC 59.274 37.500 23.79 12.59 41.40 4.42
3231 4092 5.956645 CAGTGGTTTTTGCAAAACAATTACG 59.043 36.000 23.79 6.96 41.40 3.18
3232 4093 7.066374 TCAGTGGTTTTTGCAAAACAATTAC 57.934 32.000 23.79 17.69 41.40 1.89
3233 4094 7.201679 CCATCAGTGGTTTTTGCAAAACAATTA 60.202 33.333 23.79 10.95 41.40 1.40
3234 4095 6.404513 CCATCAGTGGTTTTTGCAAAACAATT 60.405 34.615 23.79 8.99 41.40 2.32
3235 4096 5.066246 CCATCAGTGGTTTTTGCAAAACAAT 59.934 36.000 23.79 15.57 41.40 2.71
3236 4097 4.394300 CCATCAGTGGTTTTTGCAAAACAA 59.606 37.500 23.79 8.16 41.40 2.83
3237 4098 3.937706 CCATCAGTGGTTTTTGCAAAACA 59.062 39.130 23.79 16.41 40.83 2.83
3238 4099 3.312146 CCCATCAGTGGTTTTTGCAAAAC 59.688 43.478 23.79 17.44 44.48 2.43
3239 4100 3.539604 CCCATCAGTGGTTTTTGCAAAA 58.460 40.909 20.46 20.46 44.48 2.44
3240 4101 2.744494 GCCCATCAGTGGTTTTTGCAAA 60.744 45.455 8.05 8.05 44.48 3.68
3241 4102 1.202627 GCCCATCAGTGGTTTTTGCAA 60.203 47.619 0.00 0.00 44.48 4.08
3242 4103 0.392336 GCCCATCAGTGGTTTTTGCA 59.608 50.000 0.00 0.00 44.48 4.08
3243 4104 0.667184 CGCCCATCAGTGGTTTTTGC 60.667 55.000 0.00 0.00 44.48 3.68
3244 4105 0.038343 CCGCCCATCAGTGGTTTTTG 60.038 55.000 0.00 0.00 44.48 2.44
3245 4106 0.178975 TCCGCCCATCAGTGGTTTTT 60.179 50.000 0.00 0.00 44.48 1.94
3246 4107 0.039618 ATCCGCCCATCAGTGGTTTT 59.960 50.000 0.00 0.00 44.48 2.43
3247 4108 0.394352 GATCCGCCCATCAGTGGTTT 60.394 55.000 0.00 0.00 44.48 3.27
3248 4109 1.224592 GATCCGCCCATCAGTGGTT 59.775 57.895 0.00 0.00 44.48 3.67
3249 4110 2.911143 GATCCGCCCATCAGTGGT 59.089 61.111 0.00 0.00 44.48 4.16
3250 4111 2.280389 CGATCCGCCCATCAGTGG 60.280 66.667 0.00 0.00 45.61 4.00
3251 4112 2.280389 CCGATCCGCCCATCAGTG 60.280 66.667 0.00 0.00 0.00 3.66
3252 4113 3.550431 CCCGATCCGCCCATCAGT 61.550 66.667 0.00 0.00 0.00 3.41
3253 4114 4.996434 GCCCGATCCGCCCATCAG 62.996 72.222 0.00 0.00 0.00 2.90
3262 4123 1.087771 CACTTAACACGGCCCGATCC 61.088 60.000 11.71 0.00 0.00 3.36
3263 4124 0.108520 TCACTTAACACGGCCCGATC 60.109 55.000 11.71 0.00 0.00 3.69
3264 4125 0.108329 CTCACTTAACACGGCCCGAT 60.108 55.000 11.71 0.00 0.00 4.18
3265 4126 1.290955 CTCACTTAACACGGCCCGA 59.709 57.895 11.71 0.00 0.00 5.14
3266 4127 0.601841 AACTCACTTAACACGGCCCG 60.602 55.000 0.00 0.00 0.00 6.13
3267 4128 1.601166 AAACTCACTTAACACGGCCC 58.399 50.000 0.00 0.00 0.00 5.80
3268 4129 3.998341 TCATAAACTCACTTAACACGGCC 59.002 43.478 0.00 0.00 0.00 6.13
3269 4130 4.449743 TGTCATAAACTCACTTAACACGGC 59.550 41.667 0.00 0.00 0.00 5.68
3270 4131 5.107220 GGTGTCATAAACTCACTTAACACGG 60.107 44.000 0.00 0.00 37.28 4.94
3271 4132 5.107220 GGGTGTCATAAACTCACTTAACACG 60.107 44.000 0.00 0.00 37.28 4.49
3272 4133 5.180680 GGGGTGTCATAAACTCACTTAACAC 59.819 44.000 0.00 0.00 36.04 3.32
3273 4134 5.163184 TGGGGTGTCATAAACTCACTTAACA 60.163 40.000 0.00 0.00 33.30 2.41
3274 4135 5.310451 TGGGGTGTCATAAACTCACTTAAC 58.690 41.667 0.00 0.00 33.30 2.01
3275 4136 5.514136 CCTGGGGTGTCATAAACTCACTTAA 60.514 44.000 0.00 0.00 33.30 1.85
3276 4137 4.019681 CCTGGGGTGTCATAAACTCACTTA 60.020 45.833 0.00 0.00 33.30 2.24
3277 4138 3.244911 CCTGGGGTGTCATAAACTCACTT 60.245 47.826 0.00 0.00 33.30 3.16
3278 4139 2.305927 CCTGGGGTGTCATAAACTCACT 59.694 50.000 0.00 0.00 33.30 3.41
3279 4140 2.711542 CCTGGGGTGTCATAAACTCAC 58.288 52.381 0.00 0.00 0.00 3.51
3280 4141 1.004277 GCCTGGGGTGTCATAAACTCA 59.996 52.381 0.00 0.00 0.00 3.41
3281 4142 1.682087 GGCCTGGGGTGTCATAAACTC 60.682 57.143 0.00 0.00 0.00 3.01
3282 4143 0.331616 GGCCTGGGGTGTCATAAACT 59.668 55.000 0.00 0.00 0.00 2.66
3283 4144 1.029947 CGGCCTGGGGTGTCATAAAC 61.030 60.000 0.00 0.00 0.00 2.01
3284 4145 1.301623 CGGCCTGGGGTGTCATAAA 59.698 57.895 0.00 0.00 0.00 1.40
3285 4146 2.994699 CGGCCTGGGGTGTCATAA 59.005 61.111 0.00 0.00 0.00 1.90
3286 4147 3.792736 GCGGCCTGGGGTGTCATA 61.793 66.667 0.00 0.00 0.00 2.15
3315 4176 1.516603 GTCGTCTAAGGCCGTCTGC 60.517 63.158 0.00 0.00 40.16 4.26
3316 4177 1.226323 CGTCGTCTAAGGCCGTCTG 60.226 63.158 0.00 0.00 0.00 3.51
3317 4178 3.048941 GCGTCGTCTAAGGCCGTCT 62.049 63.158 0.00 0.00 0.00 4.18
3318 4179 2.578981 GCGTCGTCTAAGGCCGTC 60.579 66.667 0.00 0.00 0.00 4.79
3319 4180 3.060615 AGCGTCGTCTAAGGCCGT 61.061 61.111 0.00 0.00 0.00 5.68
3320 4181 2.579787 CAGCGTCGTCTAAGGCCG 60.580 66.667 0.00 0.00 0.00 6.13
3321 4182 1.077089 GAACAGCGTCGTCTAAGGCC 61.077 60.000 0.00 0.00 0.00 5.19
3322 4183 1.403972 CGAACAGCGTCGTCTAAGGC 61.404 60.000 0.00 0.00 36.26 4.35
3323 4184 0.797249 CCGAACAGCGTCGTCTAAGG 60.797 60.000 6.72 0.00 39.43 2.69
3324 4185 0.109873 ACCGAACAGCGTCGTCTAAG 60.110 55.000 6.72 0.00 39.43 2.18
3325 4186 0.311790 AACCGAACAGCGTCGTCTAA 59.688 50.000 6.72 0.00 39.43 2.10
3326 4187 0.110056 GAACCGAACAGCGTCGTCTA 60.110 55.000 6.72 0.00 39.43 2.59
3327 4188 1.371389 GAACCGAACAGCGTCGTCT 60.371 57.895 6.72 0.00 39.43 4.18
3328 4189 0.110056 TAGAACCGAACAGCGTCGTC 60.110 55.000 6.72 0.09 39.43 4.20
3329 4190 0.109873 CTAGAACCGAACAGCGTCGT 60.110 55.000 6.72 0.00 39.43 4.34
3330 4191 1.403972 GCTAGAACCGAACAGCGTCG 61.404 60.000 0.00 1.11 40.77 5.12
3331 4192 0.388134 TGCTAGAACCGAACAGCGTC 60.388 55.000 0.00 0.00 38.67 5.19
3332 4193 0.388649 CTGCTAGAACCGAACAGCGT 60.389 55.000 0.00 0.00 38.67 5.07
3333 4194 0.388649 ACTGCTAGAACCGAACAGCG 60.389 55.000 0.00 0.00 36.81 5.18
3334 4195 1.336887 TGACTGCTAGAACCGAACAGC 60.337 52.381 0.00 0.00 34.56 4.40
3335 4196 2.724977 TGACTGCTAGAACCGAACAG 57.275 50.000 0.00 0.00 0.00 3.16
3336 4197 3.462483 TTTGACTGCTAGAACCGAACA 57.538 42.857 0.00 0.00 0.00 3.18
3337 4198 4.056050 TCTTTTGACTGCTAGAACCGAAC 58.944 43.478 0.00 0.00 0.00 3.95
3338 4199 4.307432 CTCTTTTGACTGCTAGAACCGAA 58.693 43.478 0.00 0.00 0.00 4.30
3339 4200 3.861131 GCTCTTTTGACTGCTAGAACCGA 60.861 47.826 0.00 0.00 0.00 4.69
3340 4201 2.413453 GCTCTTTTGACTGCTAGAACCG 59.587 50.000 0.00 0.00 0.00 4.44
3341 4202 2.413453 CGCTCTTTTGACTGCTAGAACC 59.587 50.000 0.00 0.00 0.00 3.62
3342 4203 3.318017 TCGCTCTTTTGACTGCTAGAAC 58.682 45.455 0.00 0.00 0.00 3.01
3343 4204 3.660501 TCGCTCTTTTGACTGCTAGAA 57.339 42.857 0.00 0.00 0.00 2.10
3344 4205 3.318017 GTTCGCTCTTTTGACTGCTAGA 58.682 45.455 0.00 0.00 0.00 2.43
3345 4206 2.413453 GGTTCGCTCTTTTGACTGCTAG 59.587 50.000 0.00 0.00 0.00 3.42
3346 4207 2.413837 GGTTCGCTCTTTTGACTGCTA 58.586 47.619 0.00 0.00 0.00 3.49
3347 4208 1.230324 GGTTCGCTCTTTTGACTGCT 58.770 50.000 0.00 0.00 0.00 4.24
3348 4209 0.110644 CGGTTCGCTCTTTTGACTGC 60.111 55.000 0.00 0.00 0.00 4.40
3349 4210 1.217882 ACGGTTCGCTCTTTTGACTG 58.782 50.000 0.00 0.00 0.00 3.51
3350 4211 1.949465 AACGGTTCGCTCTTTTGACT 58.051 45.000 0.00 0.00 0.00 3.41
3351 4212 2.798847 AGTAACGGTTCGCTCTTTTGAC 59.201 45.455 0.00 0.00 0.00 3.18
3352 4213 3.054878 GAGTAACGGTTCGCTCTTTTGA 58.945 45.455 14.31 0.00 0.00 2.69
3353 4214 2.157085 GGAGTAACGGTTCGCTCTTTTG 59.843 50.000 18.41 0.00 0.00 2.44
3354 4215 2.036862 AGGAGTAACGGTTCGCTCTTTT 59.963 45.455 18.41 7.80 0.00 2.27
3355 4216 1.617357 AGGAGTAACGGTTCGCTCTTT 59.383 47.619 18.41 9.47 0.00 2.52
3356 4217 1.254954 AGGAGTAACGGTTCGCTCTT 58.745 50.000 18.41 12.11 0.00 2.85
3357 4218 1.254954 AAGGAGTAACGGTTCGCTCT 58.745 50.000 18.41 6.47 0.00 4.09
3358 4219 2.927553 TAAGGAGTAACGGTTCGCTC 57.072 50.000 13.61 13.61 0.00 5.03
3359 4220 2.100418 GGATAAGGAGTAACGGTTCGCT 59.900 50.000 0.00 0.00 0.00 4.93
3360 4221 2.159198 TGGATAAGGAGTAACGGTTCGC 60.159 50.000 0.00 0.00 0.00 4.70
3361 4222 3.129988 AGTGGATAAGGAGTAACGGTTCG 59.870 47.826 0.00 0.00 0.00 3.95
3362 4223 4.732672 AGTGGATAAGGAGTAACGGTTC 57.267 45.455 0.00 0.00 0.00 3.62
3363 4224 5.243207 CAAAGTGGATAAGGAGTAACGGTT 58.757 41.667 0.00 0.00 0.00 4.44
3364 4225 4.828829 CAAAGTGGATAAGGAGTAACGGT 58.171 43.478 0.00 0.00 0.00 4.83
3365 4226 3.621715 GCAAAGTGGATAAGGAGTAACGG 59.378 47.826 0.00 0.00 0.00 4.44
3366 4227 4.504858 AGCAAAGTGGATAAGGAGTAACG 58.495 43.478 0.00 0.00 0.00 3.18
3367 4228 5.351740 GTGAGCAAAGTGGATAAGGAGTAAC 59.648 44.000 0.00 0.00 0.00 2.50
3368 4229 5.248477 AGTGAGCAAAGTGGATAAGGAGTAA 59.752 40.000 0.00 0.00 0.00 2.24
3369 4230 4.777896 AGTGAGCAAAGTGGATAAGGAGTA 59.222 41.667 0.00 0.00 0.00 2.59
3370 4231 3.584848 AGTGAGCAAAGTGGATAAGGAGT 59.415 43.478 0.00 0.00 0.00 3.85
3371 4232 4.187694 GAGTGAGCAAAGTGGATAAGGAG 58.812 47.826 0.00 0.00 0.00 3.69
3372 4233 3.368427 CGAGTGAGCAAAGTGGATAAGGA 60.368 47.826 0.00 0.00 0.00 3.36
3373 4234 2.932614 CGAGTGAGCAAAGTGGATAAGG 59.067 50.000 0.00 0.00 0.00 2.69
3374 4235 2.349886 GCGAGTGAGCAAAGTGGATAAG 59.650 50.000 0.00 0.00 37.05 1.73
3375 4236 2.028112 AGCGAGTGAGCAAAGTGGATAA 60.028 45.455 0.00 0.00 40.15 1.75
3376 4237 1.550524 AGCGAGTGAGCAAAGTGGATA 59.449 47.619 0.00 0.00 40.15 2.59
3377 4238 0.322975 AGCGAGTGAGCAAAGTGGAT 59.677 50.000 0.00 0.00 40.15 3.41
3378 4239 0.319900 GAGCGAGTGAGCAAAGTGGA 60.320 55.000 0.00 0.00 40.15 4.02
3379 4240 0.601046 TGAGCGAGTGAGCAAAGTGG 60.601 55.000 0.00 0.00 40.15 4.00
3380 4241 1.392853 GATGAGCGAGTGAGCAAAGTG 59.607 52.381 0.00 0.00 40.15 3.16
3381 4242 1.719600 GATGAGCGAGTGAGCAAAGT 58.280 50.000 0.00 0.00 40.15 2.66
3382 4243 0.644331 CGATGAGCGAGTGAGCAAAG 59.356 55.000 0.00 0.00 44.57 2.77
3383 4244 1.354337 GCGATGAGCGAGTGAGCAAA 61.354 55.000 0.00 0.00 44.57 3.68
3384 4245 1.807165 GCGATGAGCGAGTGAGCAA 60.807 57.895 0.00 0.00 44.57 3.91
3385 4246 2.202663 GCGATGAGCGAGTGAGCA 60.203 61.111 0.00 0.00 44.57 4.26
3395 4256 0.592637 AGAGATGAGCGAGCGATGAG 59.407 55.000 0.00 0.00 0.00 2.90
3396 4257 0.590682 GAGAGATGAGCGAGCGATGA 59.409 55.000 0.00 0.00 0.00 2.92
3397 4258 0.725451 CGAGAGATGAGCGAGCGATG 60.725 60.000 0.00 0.00 0.00 3.84
3398 4259 1.573932 CGAGAGATGAGCGAGCGAT 59.426 57.895 0.00 0.00 0.00 4.58
3399 4260 3.018147 CGAGAGATGAGCGAGCGA 58.982 61.111 0.00 0.00 0.00 4.93
3400 4261 2.725450 GCGAGAGATGAGCGAGCG 60.725 66.667 0.00 0.00 0.00 5.03
3401 4262 1.370414 GAGCGAGAGATGAGCGAGC 60.370 63.158 0.00 0.00 35.78 5.03
3402 4263 0.235665 GAGAGCGAGAGATGAGCGAG 59.764 60.000 0.00 0.00 35.78 5.03
3403 4264 0.179059 AGAGAGCGAGAGATGAGCGA 60.179 55.000 0.00 0.00 35.78 4.93
3404 4265 0.662619 AAGAGAGCGAGAGATGAGCG 59.337 55.000 0.00 0.00 35.78 5.03
3405 4266 1.949525 AGAAGAGAGCGAGAGATGAGC 59.050 52.381 0.00 0.00 0.00 4.26
3406 4267 3.187227 GCTAGAAGAGAGCGAGAGATGAG 59.813 52.174 0.00 0.00 0.00 2.90
3407 4268 3.138304 GCTAGAAGAGAGCGAGAGATGA 58.862 50.000 0.00 0.00 0.00 2.92
3408 4269 3.141398 AGCTAGAAGAGAGCGAGAGATG 58.859 50.000 0.00 0.00 44.98 2.90
3409 4270 3.071602 AGAGCTAGAAGAGAGCGAGAGAT 59.928 47.826 0.00 0.00 44.98 2.75
3410 4271 2.434336 AGAGCTAGAAGAGAGCGAGAGA 59.566 50.000 0.00 0.00 44.98 3.10
3411 4272 2.802816 GAGAGCTAGAAGAGAGCGAGAG 59.197 54.545 0.00 0.00 44.98 3.20
3412 4273 2.801699 CGAGAGCTAGAAGAGAGCGAGA 60.802 54.545 0.00 0.00 44.98 4.04
3413 4274 1.526887 CGAGAGCTAGAAGAGAGCGAG 59.473 57.143 0.00 0.00 44.98 5.03
3414 4275 1.577468 CGAGAGCTAGAAGAGAGCGA 58.423 55.000 0.00 0.00 44.98 4.93
3428 4289 1.576356 GGCCAAGAACATAGCGAGAG 58.424 55.000 0.00 0.00 0.00 3.20
3429 4290 0.179111 CGGCCAAGAACATAGCGAGA 60.179 55.000 2.24 0.00 0.00 4.04
3430 4291 0.460284 ACGGCCAAGAACATAGCGAG 60.460 55.000 2.24 0.00 0.00 5.03
3431 4292 0.459585 GACGGCCAAGAACATAGCGA 60.460 55.000 2.24 0.00 0.00 4.93
3432 4293 1.752501 CGACGGCCAAGAACATAGCG 61.753 60.000 2.24 0.00 0.00 4.26
3433 4294 2.006772 CGACGGCCAAGAACATAGC 58.993 57.895 2.24 0.00 0.00 2.97
3434 4295 0.739462 TGCGACGGCCAAGAACATAG 60.739 55.000 2.24 0.00 38.85 2.23
3435 4296 0.107897 ATGCGACGGCCAAGAACATA 60.108 50.000 2.24 0.00 38.85 2.29
3436 4297 1.369091 GATGCGACGGCCAAGAACAT 61.369 55.000 2.24 0.00 38.85 2.71
3437 4298 2.031919 ATGCGACGGCCAAGAACA 59.968 55.556 2.24 0.00 38.85 3.18
3438 4299 2.750888 GGATGCGACGGCCAAGAAC 61.751 63.158 2.24 0.00 38.85 3.01
3439 4300 2.435938 GGATGCGACGGCCAAGAA 60.436 61.111 2.24 0.00 38.85 2.52
3440 4301 4.812476 CGGATGCGACGGCCAAGA 62.812 66.667 0.00 0.00 38.85 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.