Multiple sequence alignment - TraesCS3B01G353700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G353700 chr3B 100.000 2817 0 0 1 2817 564203829 564201013 0.000000e+00 5203.0
1 TraesCS3B01G353700 chr3D 93.675 1929 92 13 11 1933 432021561 432019657 0.000000e+00 2859.0
2 TraesCS3B01G353700 chr3A 92.006 1914 104 23 35 1933 569389609 569387730 0.000000e+00 2641.0
3 TraesCS3B01G353700 chrUn 97.727 88 2 0 1946 2033 45109318 45109231 4.860000e-33 152.0
4 TraesCS3B01G353700 chrUn 97.727 88 2 0 1946 2033 86497098 86497185 4.860000e-33 152.0
5 TraesCS3B01G353700 chrUn 97.727 88 2 0 1946 2033 186172303 186172216 4.860000e-33 152.0
6 TraesCS3B01G353700 chrUn 97.727 88 2 0 1946 2033 267450227 267450140 4.860000e-33 152.0
7 TraesCS3B01G353700 chrUn 97.727 88 2 0 1946 2033 304294674 304294587 4.860000e-33 152.0
8 TraesCS3B01G353700 chrUn 97.727 88 2 0 1946 2033 339808854 339808941 4.860000e-33 152.0
9 TraesCS3B01G353700 chr6D 97.727 88 2 0 1946 2033 430462367 430462454 4.860000e-33 152.0
10 TraesCS3B01G353700 chr4D 97.727 88 2 0 1946 2033 6630492 6630579 4.860000e-33 152.0
11 TraesCS3B01G353700 chr1D 97.727 88 2 0 1946 2033 204065190 204065103 4.860000e-33 152.0
12 TraesCS3B01G353700 chr5D 88.060 67 6 2 2588 2652 249538886 249538820 8.370000e-11 78.7
13 TraesCS3B01G353700 chr1A 83.908 87 9 3 2153 2234 484857520 484857606 8.370000e-11 78.7
14 TraesCS3B01G353700 chr7D 85.938 64 5 4 2271 2331 349944877 349944815 6.510000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G353700 chr3B 564201013 564203829 2816 True 5203 5203 100.000 1 2817 1 chr3B.!!$R1 2816
1 TraesCS3B01G353700 chr3D 432019657 432021561 1904 True 2859 2859 93.675 11 1933 1 chr3D.!!$R1 1922
2 TraesCS3B01G353700 chr3A 569387730 569389609 1879 True 2641 2641 92.006 35 1933 1 chr3A.!!$R1 1898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 317 0.042448 GAACACTTGGACGAACGCAC 60.042 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2073 0.034337 TAAACAGCACGAGGTGACCC 59.966 55.0 18.86 0.0 45.95 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.322466 CCTCAAGTCGGGCAGGGT 61.322 66.667 0.00 0.00 0.00 4.34
22 23 1.073199 CTCAAGTCGGGCAGGGTTT 59.927 57.895 0.00 0.00 0.00 3.27
23 24 0.537371 CTCAAGTCGGGCAGGGTTTT 60.537 55.000 0.00 0.00 0.00 2.43
37 38 3.684788 CAGGGTTTTACTCATCGTCCTTG 59.315 47.826 0.00 0.00 0.00 3.61
66 67 0.312102 CGCTCAGCTCCATCGTGATA 59.688 55.000 0.00 0.00 0.00 2.15
71 72 2.432146 TCAGCTCCATCGTGATAGCTTT 59.568 45.455 4.73 0.00 42.52 3.51
88 89 3.909258 TTCTCCGGCGCAGTTCGAC 62.909 63.158 10.83 0.00 44.49 4.20
147 149 1.409381 GCTTCAAGCTCCCCTGCTAAT 60.409 52.381 0.71 0.00 43.24 1.73
169 171 4.583871 TGGAAGAAGAAGAAATCCTCAGC 58.416 43.478 0.00 0.00 0.00 4.26
200 202 4.634349 TCGCTACGTTGTAAAATCACAC 57.366 40.909 0.00 0.00 0.00 3.82
211 213 8.247774 CGTTGTAAAATCACACGTAAAAGAAAC 58.752 33.333 0.00 0.00 0.00 2.78
239 244 5.972935 TCTGAAGTTCTGAACACAGTAACA 58.027 37.500 28.62 17.23 38.36 2.41
306 311 0.593008 CGTGTCGAACACTTGGACGA 60.593 55.000 13.65 0.00 46.46 4.20
307 312 1.563111 GTGTCGAACACTTGGACGAA 58.437 50.000 9.86 0.00 45.27 3.85
308 313 1.257155 GTGTCGAACACTTGGACGAAC 59.743 52.381 9.86 0.00 45.27 3.95
309 314 0.501435 GTCGAACACTTGGACGAACG 59.499 55.000 0.00 0.00 36.57 3.95
310 315 1.200839 CGAACACTTGGACGAACGC 59.799 57.895 0.00 0.00 0.00 4.84
311 316 1.484227 CGAACACTTGGACGAACGCA 61.484 55.000 0.00 0.00 0.00 5.24
312 317 0.042448 GAACACTTGGACGAACGCAC 60.042 55.000 0.00 0.00 0.00 5.34
313 318 1.433837 AACACTTGGACGAACGCACC 61.434 55.000 0.00 0.00 0.00 5.01
314 319 2.660552 ACTTGGACGAACGCACCG 60.661 61.111 0.00 0.00 0.00 4.94
344 349 3.717294 ATCCACCGCACCAGTCCC 61.717 66.667 0.00 0.00 0.00 4.46
388 393 2.110213 TATCGGTTGGCGCCATCC 59.890 61.111 36.72 36.72 33.64 3.51
405 410 3.461773 CCCCCTGTGCTCGATCGT 61.462 66.667 15.94 0.00 0.00 3.73
406 411 2.579201 CCCCTGTGCTCGATCGTT 59.421 61.111 15.94 0.00 0.00 3.85
415 420 3.417275 CTCGATCGTTCGGCAGCCT 62.417 63.158 15.94 0.00 45.53 4.58
482 490 2.127708 GTTCCATACCATCCACTCCCT 58.872 52.381 0.00 0.00 0.00 4.20
577 585 0.740868 CCTGCGTGACCACCATACAG 60.741 60.000 0.00 0.00 33.13 2.74
788 796 0.691332 AGATGCATGATCGGCTGGAT 59.309 50.000 2.46 4.02 38.35 3.41
814 822 2.890474 CGGACGTATGCACAGGGC 60.890 66.667 0.00 0.00 45.13 5.19
815 823 2.584608 GGACGTATGCACAGGGCT 59.415 61.111 0.00 0.00 45.15 5.19
816 824 1.078426 GGACGTATGCACAGGGCTT 60.078 57.895 0.00 0.00 45.15 4.35
885 894 0.243095 GACGCGTACCAACTCCTTCT 59.757 55.000 13.97 0.00 0.00 2.85
935 949 1.665916 GCTGTCTCTTGCACGCTGA 60.666 57.895 0.00 0.00 0.00 4.26
1009 1025 1.208052 GACACCAGAGCATGCCTTCTA 59.792 52.381 15.66 0.00 0.00 2.10
1025 1041 5.798125 CCTTCTACTATGAAGATGGCAGA 57.202 43.478 5.90 0.00 44.40 4.26
1026 1042 6.357579 CCTTCTACTATGAAGATGGCAGAT 57.642 41.667 5.90 0.00 44.40 2.90
1027 1043 7.473735 CCTTCTACTATGAAGATGGCAGATA 57.526 40.000 5.90 0.00 44.40 1.98
1037 1053 0.767375 ATGGCAGATATGAAGGCGGT 59.233 50.000 0.00 0.00 0.00 5.68
1039 1055 0.106708 GGCAGATATGAAGGCGGTGA 59.893 55.000 0.00 0.00 0.00 4.02
1074 1090 1.741145 GTGACGGTTGTTTCACTGGTT 59.259 47.619 0.00 0.00 39.30 3.67
1078 1094 1.064952 CGGTTGTTTCACTGGTTCACC 59.935 52.381 0.00 0.00 0.00 4.02
1229 1247 2.669364 ACGACGTAACTGGTTGTGATC 58.331 47.619 0.00 0.00 30.91 2.92
1272 1290 3.866910 ACGTTCTTTCTGCGACAAAACTA 59.133 39.130 0.00 0.00 0.00 2.24
1334 1352 2.176546 CCGCCGACGACTACGAAA 59.823 61.111 0.00 0.00 43.93 3.46
1387 1405 4.284550 AGCGGCACCACCACCATT 62.285 61.111 1.45 0.00 39.03 3.16
1565 1583 4.082523 CGAGGACATGGCCACCGT 62.083 66.667 22.78 8.90 0.00 4.83
1770 1788 0.548031 CATGGACAGTGGGGCTATGT 59.452 55.000 0.00 0.00 0.00 2.29
1877 1896 2.232941 TCCCTGTTCTCGTCCATTGTAC 59.767 50.000 0.00 0.00 0.00 2.90
1878 1897 2.233922 CCCTGTTCTCGTCCATTGTACT 59.766 50.000 0.00 0.00 0.00 2.73
1879 1898 3.446161 CCCTGTTCTCGTCCATTGTACTA 59.554 47.826 0.00 0.00 0.00 1.82
1880 1899 4.440250 CCCTGTTCTCGTCCATTGTACTAG 60.440 50.000 0.00 0.00 0.00 2.57
1881 1900 4.158025 CCTGTTCTCGTCCATTGTACTAGT 59.842 45.833 0.00 0.00 0.00 2.57
1882 1901 5.356190 CCTGTTCTCGTCCATTGTACTAGTA 59.644 44.000 0.00 0.00 0.00 1.82
1936 1955 9.832445 TTGTTGAGAGACCTGATAATAATAACC 57.168 33.333 0.00 0.00 0.00 2.85
1937 1956 8.141909 TGTTGAGAGACCTGATAATAATAACCG 58.858 37.037 0.00 0.00 0.00 4.44
1938 1957 6.688578 TGAGAGACCTGATAATAATAACCGC 58.311 40.000 0.00 0.00 0.00 5.68
1939 1958 6.493802 TGAGAGACCTGATAATAATAACCGCT 59.506 38.462 0.00 0.00 0.00 5.52
1940 1959 6.926313 AGAGACCTGATAATAATAACCGCTC 58.074 40.000 0.00 0.00 0.00 5.03
1941 1960 6.722129 AGAGACCTGATAATAATAACCGCTCT 59.278 38.462 0.00 0.00 0.00 4.09
1942 1961 7.233757 AGAGACCTGATAATAATAACCGCTCTT 59.766 37.037 0.00 0.00 0.00 2.85
1943 1962 7.736893 AGACCTGATAATAATAACCGCTCTTT 58.263 34.615 0.00 0.00 0.00 2.52
1944 1963 8.867097 AGACCTGATAATAATAACCGCTCTTTA 58.133 33.333 0.00 0.00 0.00 1.85
1945 1964 9.654663 GACCTGATAATAATAACCGCTCTTTAT 57.345 33.333 0.00 0.00 0.00 1.40
1952 1971 8.608844 AATAATAACCGCTCTTTATTCCTCAG 57.391 34.615 0.00 0.00 32.56 3.35
1953 1972 5.871396 ATAACCGCTCTTTATTCCTCAGA 57.129 39.130 0.00 0.00 0.00 3.27
1954 1973 4.762289 AACCGCTCTTTATTCCTCAGAT 57.238 40.909 0.00 0.00 0.00 2.90
1955 1974 4.329462 ACCGCTCTTTATTCCTCAGATC 57.671 45.455 0.00 0.00 0.00 2.75
1956 1975 3.070302 ACCGCTCTTTATTCCTCAGATCC 59.930 47.826 0.00 0.00 0.00 3.36
1957 1976 3.323403 CCGCTCTTTATTCCTCAGATCCT 59.677 47.826 0.00 0.00 0.00 3.24
1958 1977 4.524714 CCGCTCTTTATTCCTCAGATCCTA 59.475 45.833 0.00 0.00 0.00 2.94
1959 1978 5.011125 CCGCTCTTTATTCCTCAGATCCTAA 59.989 44.000 0.00 0.00 0.00 2.69
1960 1979 5.923684 CGCTCTTTATTCCTCAGATCCTAAC 59.076 44.000 0.00 0.00 0.00 2.34
1961 1980 6.227522 GCTCTTTATTCCTCAGATCCTAACC 58.772 44.000 0.00 0.00 0.00 2.85
1962 1981 6.742926 GCTCTTTATTCCTCAGATCCTAACCC 60.743 46.154 0.00 0.00 0.00 4.11
1963 1982 6.209774 TCTTTATTCCTCAGATCCTAACCCA 58.790 40.000 0.00 0.00 0.00 4.51
1964 1983 6.851836 TCTTTATTCCTCAGATCCTAACCCAT 59.148 38.462 0.00 0.00 0.00 4.00
1965 1984 7.350921 TCTTTATTCCTCAGATCCTAACCCATT 59.649 37.037 0.00 0.00 0.00 3.16
1966 1985 4.778213 TTCCTCAGATCCTAACCCATTG 57.222 45.455 0.00 0.00 0.00 2.82
1967 1986 3.048600 TCCTCAGATCCTAACCCATTGG 58.951 50.000 0.00 0.00 37.80 3.16
1979 1998 2.851195 ACCCATTGGTCATTATCGAGC 58.149 47.619 1.20 0.00 43.06 5.03
1980 1999 2.154462 CCCATTGGTCATTATCGAGCC 58.846 52.381 1.20 0.00 32.32 4.70
1981 2000 2.224621 CCCATTGGTCATTATCGAGCCT 60.225 50.000 1.20 0.00 32.32 4.58
1982 2001 3.480470 CCATTGGTCATTATCGAGCCTT 58.520 45.455 0.00 0.00 32.32 4.35
1983 2002 3.251729 CCATTGGTCATTATCGAGCCTTG 59.748 47.826 0.00 0.00 32.32 3.61
1984 2003 3.627395 TTGGTCATTATCGAGCCTTGT 57.373 42.857 0.00 0.00 32.32 3.16
1985 2004 2.905075 TGGTCATTATCGAGCCTTGTG 58.095 47.619 0.00 0.00 32.32 3.33
1986 2005 2.499693 TGGTCATTATCGAGCCTTGTGA 59.500 45.455 0.00 0.00 32.32 3.58
1987 2006 2.866762 GGTCATTATCGAGCCTTGTGAC 59.133 50.000 0.00 0.00 35.11 3.67
1988 2007 3.430929 GGTCATTATCGAGCCTTGTGACT 60.431 47.826 12.59 0.00 35.90 3.41
1989 2008 3.799420 GTCATTATCGAGCCTTGTGACTC 59.201 47.826 0.00 0.00 33.57 3.36
1990 2009 2.961526 TTATCGAGCCTTGTGACTCC 57.038 50.000 0.00 0.00 0.00 3.85
1991 2010 0.738975 TATCGAGCCTTGTGACTCCG 59.261 55.000 0.00 0.00 0.00 4.63
1992 2011 1.949847 ATCGAGCCTTGTGACTCCGG 61.950 60.000 0.00 0.00 0.00 5.14
1993 2012 2.435059 GAGCCTTGTGACTCCGGC 60.435 66.667 0.00 2.89 42.79 6.13
1995 2014 2.743928 GCCTTGTGACTCCGGCTG 60.744 66.667 0.00 0.00 39.42 4.85
1996 2015 2.743718 CCTTGTGACTCCGGCTGT 59.256 61.111 0.00 0.00 0.00 4.40
1997 2016 1.972198 CCTTGTGACTCCGGCTGTA 59.028 57.895 0.00 0.00 0.00 2.74
1998 2017 0.537188 CCTTGTGACTCCGGCTGTAT 59.463 55.000 0.00 0.00 0.00 2.29
1999 2018 1.066143 CCTTGTGACTCCGGCTGTATT 60.066 52.381 0.00 0.00 0.00 1.89
2000 2019 2.002586 CTTGTGACTCCGGCTGTATTG 58.997 52.381 0.00 0.00 0.00 1.90
2001 2020 1.262417 TGTGACTCCGGCTGTATTGA 58.738 50.000 0.00 0.00 0.00 2.57
2002 2021 1.831106 TGTGACTCCGGCTGTATTGAT 59.169 47.619 0.00 0.00 0.00 2.57
2003 2022 3.028130 TGTGACTCCGGCTGTATTGATA 58.972 45.455 0.00 0.00 0.00 2.15
2004 2023 3.641436 TGTGACTCCGGCTGTATTGATAT 59.359 43.478 0.00 0.00 0.00 1.63
2005 2024 4.238514 GTGACTCCGGCTGTATTGATATC 58.761 47.826 0.00 0.00 0.00 1.63
2006 2025 4.021894 GTGACTCCGGCTGTATTGATATCT 60.022 45.833 3.98 0.00 0.00 1.98
2007 2026 4.588951 TGACTCCGGCTGTATTGATATCTT 59.411 41.667 3.98 0.00 0.00 2.40
2008 2027 5.140747 ACTCCGGCTGTATTGATATCTTC 57.859 43.478 3.98 0.00 0.00 2.87
2009 2028 4.169508 CTCCGGCTGTATTGATATCTTCG 58.830 47.826 3.98 0.00 0.00 3.79
2010 2029 3.572682 TCCGGCTGTATTGATATCTTCGT 59.427 43.478 3.98 0.00 0.00 3.85
2011 2030 4.763279 TCCGGCTGTATTGATATCTTCGTA 59.237 41.667 3.98 0.00 0.00 3.43
2012 2031 5.417894 TCCGGCTGTATTGATATCTTCGTAT 59.582 40.000 3.98 0.00 0.00 3.06
2013 2032 6.071560 TCCGGCTGTATTGATATCTTCGTATT 60.072 38.462 3.98 0.00 0.00 1.89
2014 2033 7.121611 TCCGGCTGTATTGATATCTTCGTATTA 59.878 37.037 3.98 0.00 0.00 0.98
2015 2034 7.220300 CCGGCTGTATTGATATCTTCGTATTAC 59.780 40.741 3.98 0.00 0.00 1.89
2016 2035 7.220300 CGGCTGTATTGATATCTTCGTATTACC 59.780 40.741 3.98 0.00 0.00 2.85
2017 2036 8.251721 GGCTGTATTGATATCTTCGTATTACCT 58.748 37.037 3.98 0.00 0.00 3.08
2018 2037 9.077674 GCTGTATTGATATCTTCGTATTACCTG 57.922 37.037 3.98 0.00 0.00 4.00
2034 2053 9.574458 CGTATTACCTGTTATCATTCTATCTGG 57.426 37.037 0.00 0.00 0.00 3.86
2037 2056 8.547481 TTACCTGTTATCATTCTATCTGGTGA 57.453 34.615 0.00 0.00 30.15 4.02
2038 2057 7.060383 ACCTGTTATCATTCTATCTGGTGAG 57.940 40.000 0.00 0.00 0.00 3.51
2039 2058 5.931146 CCTGTTATCATTCTATCTGGTGAGC 59.069 44.000 0.00 0.00 0.00 4.26
2040 2059 6.239543 CCTGTTATCATTCTATCTGGTGAGCT 60.240 42.308 0.00 0.00 0.00 4.09
2041 2060 7.039434 CCTGTTATCATTCTATCTGGTGAGCTA 60.039 40.741 0.00 0.00 0.00 3.32
2042 2061 8.427902 TGTTATCATTCTATCTGGTGAGCTAT 57.572 34.615 0.00 0.00 0.00 2.97
2043 2062 9.533831 TGTTATCATTCTATCTGGTGAGCTATA 57.466 33.333 0.00 0.00 0.00 1.31
2046 2065 8.606754 ATCATTCTATCTGGTGAGCTATATGT 57.393 34.615 0.00 0.00 0.00 2.29
2047 2066 9.706529 ATCATTCTATCTGGTGAGCTATATGTA 57.293 33.333 0.00 0.00 0.00 2.29
2048 2067 9.183368 TCATTCTATCTGGTGAGCTATATGTAG 57.817 37.037 0.00 0.00 0.00 2.74
2049 2068 8.965819 CATTCTATCTGGTGAGCTATATGTAGT 58.034 37.037 0.00 0.00 0.00 2.73
2050 2069 8.568676 TTCTATCTGGTGAGCTATATGTAGTC 57.431 38.462 0.00 0.00 0.00 2.59
2051 2070 7.923461 TCTATCTGGTGAGCTATATGTAGTCT 58.077 38.462 0.00 0.00 0.00 3.24
2052 2071 8.387039 TCTATCTGGTGAGCTATATGTAGTCTT 58.613 37.037 0.00 0.00 0.00 3.01
2053 2072 7.847711 ATCTGGTGAGCTATATGTAGTCTTT 57.152 36.000 0.00 0.00 0.00 2.52
2054 2073 7.043961 TCTGGTGAGCTATATGTAGTCTTTG 57.956 40.000 0.00 0.00 0.00 2.77
2055 2074 6.040955 TCTGGTGAGCTATATGTAGTCTTTGG 59.959 42.308 0.00 0.00 0.00 3.28
2056 2075 5.070446 TGGTGAGCTATATGTAGTCTTTGGG 59.930 44.000 0.00 0.00 0.00 4.12
2057 2076 5.070580 GGTGAGCTATATGTAGTCTTTGGGT 59.929 44.000 0.00 0.00 0.00 4.51
2058 2077 6.217294 GTGAGCTATATGTAGTCTTTGGGTC 58.783 44.000 0.00 0.00 0.00 4.46
2059 2078 5.897250 TGAGCTATATGTAGTCTTTGGGTCA 59.103 40.000 0.00 0.00 0.00 4.02
2060 2079 6.163135 AGCTATATGTAGTCTTTGGGTCAC 57.837 41.667 0.00 0.00 0.00 3.67
2061 2080 5.070580 AGCTATATGTAGTCTTTGGGTCACC 59.929 44.000 0.00 0.00 37.24 4.02
2062 2081 5.070580 GCTATATGTAGTCTTTGGGTCACCT 59.929 44.000 0.00 0.00 37.76 4.00
2063 2082 3.983044 ATGTAGTCTTTGGGTCACCTC 57.017 47.619 0.00 0.00 37.76 3.85
2064 2083 1.616865 TGTAGTCTTTGGGTCACCTCG 59.383 52.381 0.00 0.00 37.76 4.63
2065 2084 1.617357 GTAGTCTTTGGGTCACCTCGT 59.383 52.381 0.00 0.00 37.76 4.18
2066 2085 0.393077 AGTCTTTGGGTCACCTCGTG 59.607 55.000 0.00 0.00 37.76 4.35
2067 2086 1.070786 TCTTTGGGTCACCTCGTGC 59.929 57.895 0.00 0.00 37.76 5.34
2068 2087 1.071471 CTTTGGGTCACCTCGTGCT 59.929 57.895 0.00 0.00 37.76 4.40
2069 2088 1.227823 TTTGGGTCACCTCGTGCTG 60.228 57.895 0.00 0.00 37.76 4.41
2070 2089 1.978455 TTTGGGTCACCTCGTGCTGT 61.978 55.000 0.00 0.00 37.76 4.40
2071 2090 1.978455 TTGGGTCACCTCGTGCTGTT 61.978 55.000 0.00 0.00 37.76 3.16
2072 2091 1.227853 GGGTCACCTCGTGCTGTTT 60.228 57.895 0.00 0.00 32.98 2.83
2073 2092 0.034337 GGGTCACCTCGTGCTGTTTA 59.966 55.000 0.00 0.00 32.98 2.01
2074 2093 1.145803 GGTCACCTCGTGCTGTTTAC 58.854 55.000 0.00 0.00 32.98 2.01
2075 2094 1.270147 GGTCACCTCGTGCTGTTTACT 60.270 52.381 0.00 0.00 32.98 2.24
2076 2095 2.480845 GTCACCTCGTGCTGTTTACTT 58.519 47.619 0.00 0.00 32.98 2.24
2077 2096 2.221055 GTCACCTCGTGCTGTTTACTTG 59.779 50.000 0.00 0.00 32.98 3.16
2078 2097 2.159014 TCACCTCGTGCTGTTTACTTGT 60.159 45.455 0.00 0.00 32.98 3.16
2079 2098 2.612212 CACCTCGTGCTGTTTACTTGTT 59.388 45.455 0.00 0.00 0.00 2.83
2080 2099 3.064820 CACCTCGTGCTGTTTACTTGTTT 59.935 43.478 0.00 0.00 0.00 2.83
2081 2100 3.692593 ACCTCGTGCTGTTTACTTGTTTT 59.307 39.130 0.00 0.00 0.00 2.43
2082 2101 4.877251 ACCTCGTGCTGTTTACTTGTTTTA 59.123 37.500 0.00 0.00 0.00 1.52
2083 2102 5.202640 CCTCGTGCTGTTTACTTGTTTTAC 58.797 41.667 0.00 0.00 0.00 2.01
2084 2103 5.220700 CCTCGTGCTGTTTACTTGTTTTACA 60.221 40.000 0.00 0.00 0.00 2.41
2085 2104 6.179504 TCGTGCTGTTTACTTGTTTTACAA 57.820 33.333 0.00 0.00 36.54 2.41
2097 2116 4.764050 TGTTTTACAAGAGTCCCTCACA 57.236 40.909 0.00 0.00 32.06 3.58
2098 2117 5.304686 TGTTTTACAAGAGTCCCTCACAT 57.695 39.130 0.00 0.00 32.06 3.21
2099 2118 5.690865 TGTTTTACAAGAGTCCCTCACATT 58.309 37.500 0.00 0.00 32.06 2.71
2100 2119 5.530915 TGTTTTACAAGAGTCCCTCACATTG 59.469 40.000 0.00 0.00 32.06 2.82
2101 2120 5.560722 TTTACAAGAGTCCCTCACATTGA 57.439 39.130 0.00 0.00 32.06 2.57
2102 2121 5.560722 TTACAAGAGTCCCTCACATTGAA 57.439 39.130 0.00 0.00 32.06 2.69
2103 2122 4.437682 ACAAGAGTCCCTCACATTGAAA 57.562 40.909 0.00 0.00 32.06 2.69
2104 2123 4.792068 ACAAGAGTCCCTCACATTGAAAA 58.208 39.130 0.00 0.00 32.06 2.29
2105 2124 5.388654 ACAAGAGTCCCTCACATTGAAAAT 58.611 37.500 0.00 0.00 32.06 1.82
2106 2125 5.242393 ACAAGAGTCCCTCACATTGAAAATG 59.758 40.000 0.00 0.00 32.06 2.32
2107 2126 4.990526 AGAGTCCCTCACATTGAAAATGT 58.009 39.130 0.00 0.00 32.06 2.71
2108 2127 6.126863 AGAGTCCCTCACATTGAAAATGTA 57.873 37.500 5.36 0.00 32.06 2.29
2109 2128 5.940470 AGAGTCCCTCACATTGAAAATGTAC 59.060 40.000 5.36 1.07 32.06 2.90
2110 2129 5.630121 AGTCCCTCACATTGAAAATGTACA 58.370 37.500 0.00 0.00 0.00 2.90
2111 2130 6.068010 AGTCCCTCACATTGAAAATGTACAA 58.932 36.000 0.00 0.00 0.00 2.41
2112 2131 6.721208 AGTCCCTCACATTGAAAATGTACAAT 59.279 34.615 0.00 0.00 37.22 2.71
2138 2157 9.944663 TGTGTATTTGAAAATGTACAAGAGTTC 57.055 29.630 0.00 2.15 31.85 3.01
2139 2158 9.394477 GTGTATTTGAAAATGTACAAGAGTTCC 57.606 33.333 0.00 0.00 31.85 3.62
2140 2159 9.349713 TGTATTTGAAAATGTACAAGAGTTCCT 57.650 29.630 0.00 0.00 28.50 3.36
2197 2216 9.100554 ACATAAATGTTTCGGATTTATACGACA 57.899 29.630 0.00 0.00 36.45 4.35
2198 2217 9.923786 CATAAATGTTTCGGATTTATACGACAA 57.076 29.630 0.00 0.00 43.92 3.18
2201 2220 8.835467 AATGTTTCGGATTTATACGACAAATG 57.165 30.769 0.00 0.00 43.92 2.32
2202 2221 7.367159 TGTTTCGGATTTATACGACAAATGT 57.633 32.000 0.00 0.00 43.92 2.71
2203 2222 8.476657 TGTTTCGGATTTATACGACAAATGTA 57.523 30.769 0.00 0.00 43.92 2.29
2204 2223 8.382130 TGTTTCGGATTTATACGACAAATGTAC 58.618 33.333 0.00 0.00 43.92 2.90
2205 2224 8.382130 GTTTCGGATTTATACGACAAATGTACA 58.618 33.333 0.00 0.00 43.92 2.90
2206 2225 8.476657 TTCGGATTTATACGACAAATGTACAA 57.523 30.769 0.00 0.00 43.92 2.41
2207 2226 8.651391 TCGGATTTATACGACAAATGTACAAT 57.349 30.769 0.00 0.00 38.41 2.71
2208 2227 8.544597 TCGGATTTATACGACAAATGTACAATG 58.455 33.333 0.00 5.00 38.41 2.82
2209 2228 8.332464 CGGATTTATACGACAAATGTACAATGT 58.668 33.333 15.25 15.25 35.77 2.71
2210 2229 9.433317 GGATTTATACGACAAATGTACAATGTG 57.567 33.333 18.98 11.16 0.00 3.21
2211 2230 9.982291 GATTTATACGACAAATGTACAATGTGT 57.018 29.630 18.98 13.89 0.00 3.72
2215 2234 6.176975 ACGACAAATGTACAATGTGTATGG 57.823 37.500 18.98 9.92 35.05 2.74
2216 2235 5.027737 CGACAAATGTACAATGTGTATGGC 58.972 41.667 18.98 0.00 35.05 4.40
2217 2236 5.391416 CGACAAATGTACAATGTGTATGGCA 60.391 40.000 18.98 0.00 35.05 4.92
2218 2237 6.338214 ACAAATGTACAATGTGTATGGCAA 57.662 33.333 14.73 0.00 35.05 4.52
2219 2238 6.155827 ACAAATGTACAATGTGTATGGCAAC 58.844 36.000 14.73 0.00 35.05 4.17
2220 2239 6.015519 ACAAATGTACAATGTGTATGGCAACT 60.016 34.615 14.73 0.00 35.05 3.16
2221 2240 7.175816 ACAAATGTACAATGTGTATGGCAACTA 59.824 33.333 14.73 0.00 35.05 2.24
2222 2241 6.925610 ATGTACAATGTGTATGGCAACTAG 57.074 37.500 0.00 0.00 35.05 2.57
2223 2242 6.043854 TGTACAATGTGTATGGCAACTAGA 57.956 37.500 0.00 0.00 35.05 2.43
2224 2243 5.872617 TGTACAATGTGTATGGCAACTAGAC 59.127 40.000 0.00 0.00 35.05 2.59
2225 2244 4.905429 ACAATGTGTATGGCAACTAGACA 58.095 39.130 0.00 0.00 41.62 3.41
2235 2254 5.375417 TGGCAACTAGACATGAAAACATG 57.625 39.130 0.00 8.38 36.61 3.21
2236 2255 4.826733 TGGCAACTAGACATGAAAACATGT 59.173 37.500 14.31 14.31 42.68 3.21
2237 2256 6.000840 TGGCAACTAGACATGAAAACATGTA 58.999 36.000 14.38 1.74 41.08 2.29
2238 2257 6.488344 TGGCAACTAGACATGAAAACATGTAA 59.512 34.615 14.38 6.73 41.08 2.41
2239 2258 7.176515 TGGCAACTAGACATGAAAACATGTAAT 59.823 33.333 14.38 9.72 41.08 1.89
2240 2259 8.028938 GGCAACTAGACATGAAAACATGTAATT 58.971 33.333 14.38 0.00 44.88 1.40
2241 2260 8.853345 GCAACTAGACATGAAAACATGTAATTG 58.147 33.333 14.38 15.14 44.88 2.32
2269 2288 8.674263 AAAAATGTTACTCATTGCATTTGGAA 57.326 26.923 0.00 0.00 44.85 3.53
2270 2289 8.674263 AAAATGTTACTCATTGCATTTGGAAA 57.326 26.923 0.00 0.00 44.85 3.13
2271 2290 8.674263 AAATGTTACTCATTGCATTTGGAAAA 57.326 26.923 0.00 0.00 44.85 2.29
2272 2291 8.851541 AATGTTACTCATTGCATTTGGAAAAT 57.148 26.923 0.00 0.00 44.06 1.82
2273 2292 7.655236 TGTTACTCATTGCATTTGGAAAATG 57.345 32.000 8.09 8.09 0.00 2.32
2274 2293 7.215789 TGTTACTCATTGCATTTGGAAAATGT 58.784 30.769 12.82 0.00 32.92 2.71
2275 2294 7.714377 TGTTACTCATTGCATTTGGAAAATGTT 59.286 29.630 12.82 0.00 32.92 2.71
2276 2295 9.202273 GTTACTCATTGCATTTGGAAAATGTTA 57.798 29.630 12.82 3.87 32.92 2.41
2277 2296 9.770097 TTACTCATTGCATTTGGAAAATGTTAA 57.230 25.926 12.82 9.53 32.92 2.01
2278 2297 8.674263 ACTCATTGCATTTGGAAAATGTTAAA 57.326 26.923 12.82 7.11 32.92 1.52
2279 2298 9.287373 ACTCATTGCATTTGGAAAATGTTAAAT 57.713 25.926 12.82 8.62 32.92 1.40
2280 2299 9.549509 CTCATTGCATTTGGAAAATGTTAAATG 57.450 29.630 18.95 18.95 41.23 2.32
2281 2300 9.064706 TCATTGCATTTGGAAAATGTTAAATGT 57.935 25.926 21.23 5.28 40.70 2.71
2282 2301 9.119329 CATTGCATTTGGAAAATGTTAAATGTG 57.881 29.630 12.82 3.60 40.70 3.21
2283 2302 7.798596 TGCATTTGGAAAATGTTAAATGTGT 57.201 28.000 12.82 0.00 40.70 3.72
2284 2303 8.218338 TGCATTTGGAAAATGTTAAATGTGTT 57.782 26.923 12.82 0.00 40.70 3.32
2285 2304 8.680903 TGCATTTGGAAAATGTTAAATGTGTTT 58.319 25.926 12.82 0.00 40.70 2.83
2350 2369 9.899226 ATAGAAAAACTAGACATCAAAAACAGC 57.101 29.630 0.00 0.00 34.35 4.40
2351 2370 8.000780 AGAAAAACTAGACATCAAAAACAGCT 57.999 30.769 0.00 0.00 0.00 4.24
2352 2371 9.120538 AGAAAAACTAGACATCAAAAACAGCTA 57.879 29.630 0.00 0.00 0.00 3.32
2353 2372 9.899226 GAAAAACTAGACATCAAAAACAGCTAT 57.101 29.630 0.00 0.00 0.00 2.97
2357 2376 9.899226 AACTAGACATCAAAAACAGCTATTTTC 57.101 29.630 2.63 0.00 31.35 2.29
2358 2377 9.066892 ACTAGACATCAAAAACAGCTATTTTCA 57.933 29.630 2.63 0.00 31.35 2.69
2359 2378 9.897744 CTAGACATCAAAAACAGCTATTTTCAA 57.102 29.630 2.63 0.00 31.35 2.69
2361 2380 9.034544 AGACATCAAAAACAGCTATTTTCAAAC 57.965 29.630 2.63 0.00 31.35 2.93
2362 2381 8.715191 ACATCAAAAACAGCTATTTTCAAACA 57.285 26.923 2.63 0.00 31.35 2.83
2363 2382 9.328845 ACATCAAAAACAGCTATTTTCAAACAT 57.671 25.926 2.63 0.00 31.35 2.71
2364 2383 9.588774 CATCAAAAACAGCTATTTTCAAACATG 57.411 29.630 2.63 0.00 31.35 3.21
2365 2384 8.715191 TCAAAAACAGCTATTTTCAAACATGT 57.285 26.923 2.63 0.00 31.35 3.21
2366 2385 9.160496 TCAAAAACAGCTATTTTCAAACATGTT 57.840 25.926 4.92 4.92 31.35 2.71
2371 2390 9.979578 AACAGCTATTTTCAAACATGTTAATGA 57.020 25.926 12.39 10.19 37.24 2.57
2616 2635 9.515226 TGCTAAACATGTATAGAAAAAGTTCCT 57.485 29.630 0.00 0.00 33.92 3.36
2617 2636 9.774742 GCTAAACATGTATAGAAAAAGTTCCTG 57.225 33.333 0.00 0.00 33.92 3.86
2621 2640 9.520515 AACATGTATAGAAAAAGTTCCTGATGT 57.479 29.630 0.00 0.00 33.92 3.06
2629 2648 8.842358 AGAAAAAGTTCCTGATGTATACGAAA 57.158 30.769 0.00 0.00 33.92 3.46
2630 2649 9.280174 AGAAAAAGTTCCTGATGTATACGAAAA 57.720 29.630 0.00 0.00 33.92 2.29
2645 2664 8.270111 TGTATACGAAAATATACATTGTGTGCG 58.730 33.333 0.00 0.00 41.16 5.34
2646 2665 5.788055 ACGAAAATATACATTGTGTGCGA 57.212 34.783 0.00 0.00 0.00 5.10
2647 2666 6.171932 ACGAAAATATACATTGTGTGCGAA 57.828 33.333 0.00 0.00 0.00 4.70
2648 2667 6.604012 ACGAAAATATACATTGTGTGCGAAA 58.396 32.000 0.00 0.00 0.00 3.46
2649 2668 7.078851 ACGAAAATATACATTGTGTGCGAAAA 58.921 30.769 0.00 0.00 0.00 2.29
2650 2669 7.591795 ACGAAAATATACATTGTGTGCGAAAAA 59.408 29.630 0.00 0.00 0.00 1.94
2651 2670 8.582930 CGAAAATATACATTGTGTGCGAAAAAT 58.417 29.630 0.00 0.00 0.00 1.82
2652 2671 9.674208 GAAAATATACATTGTGTGCGAAAAATG 57.326 29.630 0.00 0.89 36.35 2.32
2653 2672 8.755696 AAATATACATTGTGTGCGAAAAATGT 57.244 26.923 10.76 10.76 43.64 2.71
2654 2673 7.739022 ATATACATTGTGTGCGAAAAATGTG 57.261 32.000 14.30 0.00 41.88 3.21
2655 2674 3.122297 ACATTGTGTGCGAAAAATGTGG 58.878 40.909 6.26 0.00 40.71 4.17
2656 2675 3.181482 ACATTGTGTGCGAAAAATGTGGA 60.181 39.130 6.26 0.00 40.71 4.02
2657 2676 2.483583 TGTGTGCGAAAAATGTGGAC 57.516 45.000 0.00 0.00 0.00 4.02
2658 2677 1.745653 TGTGTGCGAAAAATGTGGACA 59.254 42.857 0.00 0.00 0.00 4.02
2659 2678 2.360483 TGTGTGCGAAAAATGTGGACAT 59.640 40.909 0.00 0.00 36.36 3.06
2660 2679 2.725723 GTGTGCGAAAAATGTGGACATG 59.274 45.455 0.00 0.00 36.36 3.21
2661 2680 2.288091 TGTGCGAAAAATGTGGACATGG 60.288 45.455 0.00 0.00 36.56 3.66
2662 2681 1.271934 TGCGAAAAATGTGGACATGGG 59.728 47.619 0.00 0.00 36.56 4.00
2663 2682 1.272212 GCGAAAAATGTGGACATGGGT 59.728 47.619 0.00 0.00 36.56 4.51
2664 2683 2.288763 GCGAAAAATGTGGACATGGGTT 60.289 45.455 0.00 0.00 36.56 4.11
2665 2684 3.574614 CGAAAAATGTGGACATGGGTTC 58.425 45.455 0.00 0.00 36.56 3.62
2666 2685 3.005261 CGAAAAATGTGGACATGGGTTCA 59.995 43.478 0.00 0.00 36.56 3.18
2667 2686 4.500545 CGAAAAATGTGGACATGGGTTCAA 60.501 41.667 0.00 0.00 33.26 2.69
2668 2687 5.363939 GAAAAATGTGGACATGGGTTCAAA 58.636 37.500 0.00 0.00 33.26 2.69
2669 2688 5.365021 AAAATGTGGACATGGGTTCAAAA 57.635 34.783 0.00 0.00 33.26 2.44
2670 2689 5.365021 AAATGTGGACATGGGTTCAAAAA 57.635 34.783 0.00 0.00 33.26 1.94
2706 2725 9.906660 AAAAGAAAAACAGAAAATGGAAAAACC 57.093 25.926 0.00 0.00 39.54 3.27
2719 2738 5.407407 TGGAAAAACCAAAGTAAGCAACA 57.593 34.783 0.00 0.00 46.75 3.33
2720 2739 5.983540 TGGAAAAACCAAAGTAAGCAACAT 58.016 33.333 0.00 0.00 46.75 2.71
2721 2740 7.113658 TGGAAAAACCAAAGTAAGCAACATA 57.886 32.000 0.00 0.00 46.75 2.29
2722 2741 7.556844 TGGAAAAACCAAAGTAAGCAACATAA 58.443 30.769 0.00 0.00 46.75 1.90
2723 2742 7.492994 TGGAAAAACCAAAGTAAGCAACATAAC 59.507 33.333 0.00 0.00 46.75 1.89
2724 2743 7.492994 GGAAAAACCAAAGTAAGCAACATAACA 59.507 33.333 0.00 0.00 38.79 2.41
2725 2744 8.779354 AAAAACCAAAGTAAGCAACATAACAA 57.221 26.923 0.00 0.00 0.00 2.83
2726 2745 8.419076 AAAACCAAAGTAAGCAACATAACAAG 57.581 30.769 0.00 0.00 0.00 3.16
2727 2746 6.084326 ACCAAAGTAAGCAACATAACAAGG 57.916 37.500 0.00 0.00 0.00 3.61
2728 2747 5.596772 ACCAAAGTAAGCAACATAACAAGGT 59.403 36.000 0.00 0.00 0.00 3.50
2729 2748 5.920273 CCAAAGTAAGCAACATAACAAGGTG 59.080 40.000 0.00 0.00 0.00 4.00
2730 2749 6.238897 CCAAAGTAAGCAACATAACAAGGTGA 60.239 38.462 0.00 0.00 0.00 4.02
2731 2750 6.952773 AAGTAAGCAACATAACAAGGTGAA 57.047 33.333 0.00 0.00 0.00 3.18
2732 2751 6.952773 AGTAAGCAACATAACAAGGTGAAA 57.047 33.333 0.00 0.00 0.00 2.69
2733 2752 7.341445 AGTAAGCAACATAACAAGGTGAAAA 57.659 32.000 0.00 0.00 0.00 2.29
2734 2753 7.200455 AGTAAGCAACATAACAAGGTGAAAAC 58.800 34.615 0.00 0.00 0.00 2.43
2735 2754 4.944048 AGCAACATAACAAGGTGAAAACC 58.056 39.130 0.00 0.00 0.00 3.27
2736 2755 4.404073 AGCAACATAACAAGGTGAAAACCA 59.596 37.500 0.00 0.00 0.00 3.67
2737 2756 5.105146 AGCAACATAACAAGGTGAAAACCAA 60.105 36.000 0.00 0.00 0.00 3.67
2738 2757 5.582665 GCAACATAACAAGGTGAAAACCAAA 59.417 36.000 0.00 0.00 0.00 3.28
2739 2758 6.238076 GCAACATAACAAGGTGAAAACCAAAG 60.238 38.462 0.00 0.00 0.00 2.77
2740 2759 6.783708 ACATAACAAGGTGAAAACCAAAGA 57.216 33.333 0.00 0.00 0.00 2.52
2741 2760 7.176589 ACATAACAAGGTGAAAACCAAAGAA 57.823 32.000 0.00 0.00 0.00 2.52
2742 2761 7.791029 ACATAACAAGGTGAAAACCAAAGAAT 58.209 30.769 0.00 0.00 0.00 2.40
2743 2762 8.919145 ACATAACAAGGTGAAAACCAAAGAATA 58.081 29.630 0.00 0.00 0.00 1.75
2744 2763 9.757227 CATAACAAGGTGAAAACCAAAGAATAA 57.243 29.630 0.00 0.00 0.00 1.40
2747 2766 9.508642 AACAAGGTGAAAACCAAAGAATAAAAA 57.491 25.926 0.00 0.00 0.00 1.94
2815 2834 7.765695 AAAGAGAGGAAAATGCTATTGTTCA 57.234 32.000 0.00 0.00 0.00 3.18
2816 2835 6.998968 AGAGAGGAAAATGCTATTGTTCAG 57.001 37.500 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.144936 CCTGCCCGACTTGAGGATC 59.855 63.158 0.00 0.00 0.00 3.36
1 2 2.370445 CCCTGCCCGACTTGAGGAT 61.370 63.158 0.00 0.00 0.00 3.24
2 3 3.003173 CCCTGCCCGACTTGAGGA 61.003 66.667 0.00 0.00 0.00 3.71
3 4 2.411765 AAACCCTGCCCGACTTGAGG 62.412 60.000 0.00 0.00 0.00 3.86
4 5 0.537371 AAAACCCTGCCCGACTTGAG 60.537 55.000 0.00 0.00 0.00 3.02
5 6 0.766131 TAAAACCCTGCCCGACTTGA 59.234 50.000 0.00 0.00 0.00 3.02
6 7 0.879090 GTAAAACCCTGCCCGACTTG 59.121 55.000 0.00 0.00 0.00 3.16
7 8 0.769247 AGTAAAACCCTGCCCGACTT 59.231 50.000 0.00 0.00 0.00 3.01
8 9 0.323957 GAGTAAAACCCTGCCCGACT 59.676 55.000 0.00 0.00 0.00 4.18
9 10 0.035739 TGAGTAAAACCCTGCCCGAC 59.964 55.000 0.00 0.00 0.00 4.79
20 21 3.410631 TGCCAAGGACGATGAGTAAAA 57.589 42.857 0.00 0.00 0.00 1.52
22 23 2.766263 AGATGCCAAGGACGATGAGTAA 59.234 45.455 0.00 0.00 0.00 2.24
23 24 2.388735 AGATGCCAAGGACGATGAGTA 58.611 47.619 0.00 0.00 0.00 2.59
37 38 3.885521 GCTGAGCGCCAAGATGCC 61.886 66.667 2.29 0.00 0.00 4.40
66 67 3.537206 AACTGCGCCGGAGAAAGCT 62.537 57.895 14.02 0.00 0.00 3.74
71 72 4.415332 GTCGAACTGCGCCGGAGA 62.415 66.667 14.02 0.00 40.61 3.71
117 118 1.398390 GAGCTTGAAGCCCAATGTACG 59.602 52.381 14.45 0.00 43.77 3.67
123 125 2.162906 AGGGGAGCTTGAAGCCCAA 61.163 57.895 20.89 0.00 43.77 4.12
147 149 4.566488 GGCTGAGGATTTCTTCTTCTTCCA 60.566 45.833 0.00 0.00 31.86 3.53
169 171 1.455786 CAACGTAGCGAACTCAACAGG 59.544 52.381 0.00 0.00 0.00 4.00
200 202 8.062448 AGAACTTCAGAATTCGTTTCTTTTACG 58.938 33.333 0.00 0.00 42.15 3.18
211 213 5.235186 ACTGTGTTCAGAACTTCAGAATTCG 59.765 40.000 28.75 13.99 43.76 3.34
239 244 2.091885 TGTCAGGGTTTCTTCAGGCTTT 60.092 45.455 0.00 0.00 0.00 3.51
388 393 2.907897 GAACGATCGAGCACAGGGGG 62.908 65.000 24.34 0.00 0.00 5.40
401 406 2.185350 CAGAGGCTGCCGAACGAT 59.815 61.111 13.96 0.00 0.00 3.73
482 490 2.792947 GGATCCGGCCAAGAGCGTA 61.793 63.158 2.24 0.00 45.17 4.42
510 518 1.016130 CAGTTCGCGCTGGAATCTGT 61.016 55.000 5.56 0.00 33.11 3.41
511 519 1.016130 ACAGTTCGCGCTGGAATCTG 61.016 55.000 16.46 13.95 40.59 2.90
577 585 4.404654 CGCCTTTTCACCGCTGCC 62.405 66.667 0.00 0.00 0.00 4.85
630 638 9.179909 TGTAAAGTAACAGGAAAGAATGTTCAA 57.820 29.630 0.00 0.00 31.83 2.69
788 796 1.017177 GCATACGTCCGTTTCCTGCA 61.017 55.000 0.00 0.00 0.00 4.41
814 822 2.256174 CGTTTTGGAGCATGCATCAAG 58.744 47.619 21.98 8.16 35.22 3.02
815 823 1.612950 ACGTTTTGGAGCATGCATCAA 59.387 42.857 21.98 19.49 35.22 2.57
816 824 1.068402 CACGTTTTGGAGCATGCATCA 60.068 47.619 21.98 14.49 35.22 3.07
885 894 0.539669 TGTCGGCAGACCAGAAGAGA 60.540 55.000 14.62 0.00 46.51 3.10
1009 1025 6.709281 CCTTCATATCTGCCATCTTCATAGT 58.291 40.000 0.00 0.00 0.00 2.12
1023 1039 2.880890 GCAAATCACCGCCTTCATATCT 59.119 45.455 0.00 0.00 0.00 1.98
1025 1041 2.653726 TGCAAATCACCGCCTTCATAT 58.346 42.857 0.00 0.00 0.00 1.78
1026 1042 2.121291 TGCAAATCACCGCCTTCATA 57.879 45.000 0.00 0.00 0.00 2.15
1027 1043 1.406539 GATGCAAATCACCGCCTTCAT 59.593 47.619 0.00 0.00 0.00 2.57
1037 1053 3.875039 CCGCGGCGATGCAAATCA 61.875 61.111 25.92 0.00 34.15 2.57
1039 1055 4.178214 CACCGCGGCGATGCAAAT 62.178 61.111 28.58 0.00 34.15 2.32
1062 1078 2.752354 CACAAGGTGAACCAGTGAAACA 59.248 45.455 15.92 0.00 42.91 2.83
1272 1290 2.681848 GAGCTGTACTTGAATGCTGCAT 59.318 45.455 9.81 9.81 33.83 3.96
1450 1468 1.273838 ACCTCCACCTCCAGCTTCATA 60.274 52.381 0.00 0.00 0.00 2.15
1543 1561 1.918293 TGGCCATGTCCTCGGAACT 60.918 57.895 0.00 0.00 0.00 3.01
1770 1788 3.449227 CTACGAGCCCCAGTGCGA 61.449 66.667 0.00 0.00 36.02 5.10
1877 1896 7.063898 CCTCACAATCTGAACACACAATACTAG 59.936 40.741 0.00 0.00 0.00 2.57
1878 1897 6.873605 CCTCACAATCTGAACACACAATACTA 59.126 38.462 0.00 0.00 0.00 1.82
1879 1898 5.702670 CCTCACAATCTGAACACACAATACT 59.297 40.000 0.00 0.00 0.00 2.12
1880 1899 5.470098 ACCTCACAATCTGAACACACAATAC 59.530 40.000 0.00 0.00 0.00 1.89
1881 1900 5.469760 CACCTCACAATCTGAACACACAATA 59.530 40.000 0.00 0.00 0.00 1.90
1882 1901 4.276678 CACCTCACAATCTGAACACACAAT 59.723 41.667 0.00 0.00 0.00 2.71
1933 1952 4.443598 GGATCTGAGGAATAAAGAGCGGTT 60.444 45.833 0.00 0.00 0.00 4.44
1934 1953 3.070302 GGATCTGAGGAATAAAGAGCGGT 59.930 47.826 0.00 0.00 0.00 5.68
1935 1954 3.323403 AGGATCTGAGGAATAAAGAGCGG 59.677 47.826 0.00 0.00 0.00 5.52
1936 1955 4.599047 AGGATCTGAGGAATAAAGAGCG 57.401 45.455 0.00 0.00 0.00 5.03
1937 1956 6.227522 GGTTAGGATCTGAGGAATAAAGAGC 58.772 44.000 0.00 0.00 0.00 4.09
1938 1957 6.327626 TGGGTTAGGATCTGAGGAATAAAGAG 59.672 42.308 0.00 0.00 0.00 2.85
1939 1958 6.209774 TGGGTTAGGATCTGAGGAATAAAGA 58.790 40.000 0.00 0.00 0.00 2.52
1940 1959 6.500589 TGGGTTAGGATCTGAGGAATAAAG 57.499 41.667 0.00 0.00 0.00 1.85
1941 1960 7.290061 CAATGGGTTAGGATCTGAGGAATAAA 58.710 38.462 0.00 0.00 0.00 1.40
1942 1961 6.183361 CCAATGGGTTAGGATCTGAGGAATAA 60.183 42.308 0.00 0.00 0.00 1.40
1943 1962 5.310594 CCAATGGGTTAGGATCTGAGGAATA 59.689 44.000 0.00 0.00 0.00 1.75
1944 1963 4.105377 CCAATGGGTTAGGATCTGAGGAAT 59.895 45.833 0.00 0.00 0.00 3.01
1945 1964 3.459598 CCAATGGGTTAGGATCTGAGGAA 59.540 47.826 0.00 0.00 0.00 3.36
1946 1965 3.048600 CCAATGGGTTAGGATCTGAGGA 58.951 50.000 0.00 0.00 0.00 3.71
1947 1966 3.498774 CCAATGGGTTAGGATCTGAGG 57.501 52.381 0.00 0.00 0.00 3.86
1960 1979 2.154462 GGCTCGATAATGACCAATGGG 58.846 52.381 3.55 0.00 41.29 4.00
1961 1980 3.131709 AGGCTCGATAATGACCAATGG 57.868 47.619 0.00 0.00 0.00 3.16
1962 1981 3.879295 ACAAGGCTCGATAATGACCAATG 59.121 43.478 0.00 0.00 0.00 2.82
1963 1982 3.879295 CACAAGGCTCGATAATGACCAAT 59.121 43.478 0.00 0.00 0.00 3.16
1964 1983 3.055458 TCACAAGGCTCGATAATGACCAA 60.055 43.478 0.00 0.00 0.00 3.67
1965 1984 2.499693 TCACAAGGCTCGATAATGACCA 59.500 45.455 0.00 0.00 0.00 4.02
1966 1985 2.866762 GTCACAAGGCTCGATAATGACC 59.133 50.000 0.00 0.00 30.98 4.02
1967 1986 3.786635 AGTCACAAGGCTCGATAATGAC 58.213 45.455 0.00 0.00 36.16 3.06
1968 1987 3.181475 GGAGTCACAAGGCTCGATAATGA 60.181 47.826 0.00 0.00 32.83 2.57
1969 1988 3.126831 GGAGTCACAAGGCTCGATAATG 58.873 50.000 0.00 0.00 32.83 1.90
1970 1989 2.223829 CGGAGTCACAAGGCTCGATAAT 60.224 50.000 0.00 0.00 32.83 1.28
1971 1990 1.134367 CGGAGTCACAAGGCTCGATAA 59.866 52.381 0.00 0.00 32.83 1.75
1972 1991 0.738975 CGGAGTCACAAGGCTCGATA 59.261 55.000 0.00 0.00 32.83 2.92
1973 1992 1.513158 CGGAGTCACAAGGCTCGAT 59.487 57.895 0.00 0.00 32.83 3.59
1974 1993 2.636412 CCGGAGTCACAAGGCTCGA 61.636 63.158 0.00 0.00 32.83 4.04
1975 1994 2.125912 CCGGAGTCACAAGGCTCG 60.126 66.667 0.00 0.00 32.83 5.03
1976 1995 2.435059 GCCGGAGTCACAAGGCTC 60.435 66.667 5.05 0.00 45.67 4.70
1979 1998 0.537188 ATACAGCCGGAGTCACAAGG 59.463 55.000 5.05 0.00 0.00 3.61
1980 1999 2.002586 CAATACAGCCGGAGTCACAAG 58.997 52.381 5.05 0.00 0.00 3.16
1981 2000 1.621317 TCAATACAGCCGGAGTCACAA 59.379 47.619 5.05 0.00 0.00 3.33
1982 2001 1.262417 TCAATACAGCCGGAGTCACA 58.738 50.000 5.05 0.00 0.00 3.58
1983 2002 2.604046 ATCAATACAGCCGGAGTCAC 57.396 50.000 5.05 0.00 0.00 3.67
1984 2003 4.152647 AGATATCAATACAGCCGGAGTCA 58.847 43.478 5.05 0.00 0.00 3.41
1985 2004 4.792521 AGATATCAATACAGCCGGAGTC 57.207 45.455 5.05 0.00 0.00 3.36
1986 2005 4.321304 CGAAGATATCAATACAGCCGGAGT 60.321 45.833 5.05 5.20 0.00 3.85
1987 2006 4.169508 CGAAGATATCAATACAGCCGGAG 58.830 47.826 5.05 0.00 0.00 4.63
1988 2007 3.572682 ACGAAGATATCAATACAGCCGGA 59.427 43.478 5.05 0.00 0.00 5.14
1989 2008 3.914312 ACGAAGATATCAATACAGCCGG 58.086 45.455 5.32 0.00 0.00 6.13
1990 2009 7.220300 GGTAATACGAAGATATCAATACAGCCG 59.780 40.741 5.32 0.00 0.00 5.52
1991 2010 8.251721 AGGTAATACGAAGATATCAATACAGCC 58.748 37.037 5.32 0.00 0.00 4.85
1992 2011 9.077674 CAGGTAATACGAAGATATCAATACAGC 57.922 37.037 5.32 0.00 0.00 4.40
2008 2027 9.574458 CCAGATAGAATGATAACAGGTAATACG 57.426 37.037 0.00 0.00 0.00 3.06
2011 2030 9.159254 TCACCAGATAGAATGATAACAGGTAAT 57.841 33.333 0.00 0.00 0.00 1.89
2012 2031 8.547481 TCACCAGATAGAATGATAACAGGTAA 57.453 34.615 0.00 0.00 0.00 2.85
2013 2032 7.255977 GCTCACCAGATAGAATGATAACAGGTA 60.256 40.741 0.00 0.00 0.00 3.08
2014 2033 6.463614 GCTCACCAGATAGAATGATAACAGGT 60.464 42.308 0.00 0.00 0.00 4.00
2015 2034 5.931146 GCTCACCAGATAGAATGATAACAGG 59.069 44.000 0.00 0.00 0.00 4.00
2016 2035 6.757237 AGCTCACCAGATAGAATGATAACAG 58.243 40.000 0.00 0.00 0.00 3.16
2017 2036 6.737720 AGCTCACCAGATAGAATGATAACA 57.262 37.500 0.00 0.00 0.00 2.41
2020 2039 9.706529 ACATATAGCTCACCAGATAGAATGATA 57.293 33.333 0.00 0.00 29.00 2.15
2021 2040 8.606754 ACATATAGCTCACCAGATAGAATGAT 57.393 34.615 0.00 0.00 29.00 2.45
2022 2041 9.183368 CTACATATAGCTCACCAGATAGAATGA 57.817 37.037 0.00 0.00 29.00 2.57
2023 2042 8.965819 ACTACATATAGCTCACCAGATAGAATG 58.034 37.037 0.00 0.00 30.75 2.67
2024 2043 9.184523 GACTACATATAGCTCACCAGATAGAAT 57.815 37.037 0.00 0.00 30.75 2.40
2025 2044 8.387039 AGACTACATATAGCTCACCAGATAGAA 58.613 37.037 0.00 0.00 30.75 2.10
2026 2045 7.923461 AGACTACATATAGCTCACCAGATAGA 58.077 38.462 0.00 0.00 30.75 1.98
2027 2046 8.574251 AAGACTACATATAGCTCACCAGATAG 57.426 38.462 0.00 0.00 30.75 2.08
2028 2047 8.797438 CAAAGACTACATATAGCTCACCAGATA 58.203 37.037 0.00 0.00 30.75 1.98
2029 2048 7.256119 CCAAAGACTACATATAGCTCACCAGAT 60.256 40.741 0.00 0.00 30.75 2.90
2030 2049 6.040955 CCAAAGACTACATATAGCTCACCAGA 59.959 42.308 0.00 0.00 30.75 3.86
2031 2050 6.219473 CCAAAGACTACATATAGCTCACCAG 58.781 44.000 0.00 0.00 30.75 4.00
2032 2051 5.070446 CCCAAAGACTACATATAGCTCACCA 59.930 44.000 0.00 0.00 30.75 4.17
2033 2052 5.070580 ACCCAAAGACTACATATAGCTCACC 59.929 44.000 0.00 0.00 30.75 4.02
2034 2053 6.163135 ACCCAAAGACTACATATAGCTCAC 57.837 41.667 0.00 0.00 30.75 3.51
2035 2054 5.897250 TGACCCAAAGACTACATATAGCTCA 59.103 40.000 0.00 0.00 30.75 4.26
2036 2055 6.217294 GTGACCCAAAGACTACATATAGCTC 58.783 44.000 0.00 0.00 30.75 4.09
2037 2056 5.070580 GGTGACCCAAAGACTACATATAGCT 59.929 44.000 0.00 0.00 30.75 3.32
2038 2057 5.070580 AGGTGACCCAAAGACTACATATAGC 59.929 44.000 0.00 0.00 30.75 2.97
2039 2058 6.515200 CGAGGTGACCCAAAGACTACATATAG 60.515 46.154 0.00 0.00 34.25 1.31
2040 2059 5.301045 CGAGGTGACCCAAAGACTACATATA 59.699 44.000 0.00 0.00 0.00 0.86
2041 2060 4.099573 CGAGGTGACCCAAAGACTACATAT 59.900 45.833 0.00 0.00 0.00 1.78
2042 2061 3.446161 CGAGGTGACCCAAAGACTACATA 59.554 47.826 0.00 0.00 0.00 2.29
2043 2062 2.233922 CGAGGTGACCCAAAGACTACAT 59.766 50.000 0.00 0.00 0.00 2.29
2044 2063 1.616865 CGAGGTGACCCAAAGACTACA 59.383 52.381 0.00 0.00 0.00 2.74
2045 2064 1.617357 ACGAGGTGACCCAAAGACTAC 59.383 52.381 0.00 0.00 0.00 2.73
2046 2065 1.616865 CACGAGGTGACCCAAAGACTA 59.383 52.381 0.00 0.00 35.23 2.59
2047 2066 0.393077 CACGAGGTGACCCAAAGACT 59.607 55.000 0.00 0.00 35.23 3.24
2048 2067 1.228657 GCACGAGGTGACCCAAAGAC 61.229 60.000 0.00 0.00 35.23 3.01
2049 2068 1.070786 GCACGAGGTGACCCAAAGA 59.929 57.895 0.00 0.00 35.23 2.52
2050 2069 1.071471 AGCACGAGGTGACCCAAAG 59.929 57.895 0.00 0.00 35.23 2.77
2051 2070 1.227823 CAGCACGAGGTGACCCAAA 60.228 57.895 6.14 0.00 45.95 3.28
2052 2071 1.978455 AACAGCACGAGGTGACCCAA 61.978 55.000 18.86 0.00 45.95 4.12
2053 2072 1.978455 AAACAGCACGAGGTGACCCA 61.978 55.000 18.86 0.00 45.95 4.51
2054 2073 0.034337 TAAACAGCACGAGGTGACCC 59.966 55.000 18.86 0.00 45.95 4.46
2055 2074 1.145803 GTAAACAGCACGAGGTGACC 58.854 55.000 18.86 0.00 45.95 4.02
2056 2075 2.150397 AGTAAACAGCACGAGGTGAC 57.850 50.000 18.86 6.65 45.95 3.67
2057 2076 2.159014 ACAAGTAAACAGCACGAGGTGA 60.159 45.455 18.86 0.00 45.95 4.02
2059 2078 2.614829 ACAAGTAAACAGCACGAGGT 57.385 45.000 0.00 0.00 0.00 3.85
2060 2079 3.963383 AAACAAGTAAACAGCACGAGG 57.037 42.857 0.00 0.00 0.00 4.63
2061 2080 5.802064 TGTAAAACAAGTAAACAGCACGAG 58.198 37.500 0.00 0.00 0.00 4.18
2062 2081 5.798015 TGTAAAACAAGTAAACAGCACGA 57.202 34.783 0.00 0.00 0.00 4.35
2086 2105 7.094205 ATTGTACATTTTCAATGTGAGGGACTC 60.094 37.037 11.59 0.00 42.85 3.36
2087 2106 5.630121 TGTACATTTTCAATGTGAGGGACT 58.370 37.500 11.59 0.00 35.64 3.85
2088 2107 5.957842 TGTACATTTTCAATGTGAGGGAC 57.042 39.130 11.59 3.23 33.76 4.46
2089 2108 6.923012 CATTGTACATTTTCAATGTGAGGGA 58.077 36.000 11.59 0.00 43.08 4.20
2112 2131 9.944663 GAACTCTTGTACATTTTCAAATACACA 57.055 29.630 0.00 0.00 0.00 3.72
2113 2132 9.394477 GGAACTCTTGTACATTTTCAAATACAC 57.606 33.333 0.00 0.00 0.00 2.90
2114 2133 9.349713 AGGAACTCTTGTACATTTTCAAATACA 57.650 29.630 0.00 0.00 0.00 2.29
2171 2190 9.100554 TGTCGTATAAATCCGAAACATTTATGT 57.899 29.630 7.59 0.00 44.20 2.29
2172 2191 9.923786 TTGTCGTATAAATCCGAAACATTTATG 57.076 29.630 7.59 0.00 37.14 1.90
2175 2194 9.284594 CATTTGTCGTATAAATCCGAAACATTT 57.715 29.630 0.00 0.00 34.47 2.32
2176 2195 8.455682 ACATTTGTCGTATAAATCCGAAACATT 58.544 29.630 0.00 0.00 34.47 2.71
2177 2196 7.981142 ACATTTGTCGTATAAATCCGAAACAT 58.019 30.769 0.00 0.00 34.47 2.71
2178 2197 7.367159 ACATTTGTCGTATAAATCCGAAACA 57.633 32.000 0.00 0.00 34.47 2.83
2179 2198 8.382130 TGTACATTTGTCGTATAAATCCGAAAC 58.618 33.333 0.00 0.00 34.47 2.78
2180 2199 8.476657 TGTACATTTGTCGTATAAATCCGAAA 57.523 30.769 0.00 0.00 34.47 3.46
2181 2200 8.476657 TTGTACATTTGTCGTATAAATCCGAA 57.523 30.769 0.00 0.00 34.47 4.30
2182 2201 8.544597 CATTGTACATTTGTCGTATAAATCCGA 58.455 33.333 0.00 0.00 0.00 4.55
2183 2202 8.332464 ACATTGTACATTTGTCGTATAAATCCG 58.668 33.333 0.00 0.00 0.00 4.18
2184 2203 9.433317 CACATTGTACATTTGTCGTATAAATCC 57.567 33.333 8.56 0.00 0.00 3.01
2185 2204 9.982291 ACACATTGTACATTTGTCGTATAAATC 57.018 29.630 8.56 0.00 0.00 2.17
2189 2208 9.036671 CCATACACATTGTACATTTGTCGTATA 57.963 33.333 19.59 9.99 35.42 1.47
2190 2209 7.466725 GCCATACACATTGTACATTTGTCGTAT 60.467 37.037 17.26 17.26 35.42 3.06
2191 2210 6.183360 GCCATACACATTGTACATTTGTCGTA 60.183 38.462 8.56 12.89 35.42 3.43
2192 2211 5.391523 GCCATACACATTGTACATTTGTCGT 60.392 40.000 8.56 11.62 35.42 4.34
2193 2212 5.027737 GCCATACACATTGTACATTTGTCG 58.972 41.667 8.56 7.67 35.42 4.35
2194 2213 5.948588 TGCCATACACATTGTACATTTGTC 58.051 37.500 8.56 0.00 35.42 3.18
2195 2214 5.973899 TGCCATACACATTGTACATTTGT 57.026 34.783 0.00 0.90 35.42 2.83
2196 2215 6.389091 AGTTGCCATACACATTGTACATTTG 58.611 36.000 0.00 0.19 35.42 2.32
2197 2216 6.588719 AGTTGCCATACACATTGTACATTT 57.411 33.333 0.00 0.00 35.42 2.32
2198 2217 7.065803 GTCTAGTTGCCATACACATTGTACATT 59.934 37.037 0.00 0.00 35.42 2.71
2199 2218 6.538742 GTCTAGTTGCCATACACATTGTACAT 59.461 38.462 0.00 0.00 35.42 2.29
2200 2219 5.872617 GTCTAGTTGCCATACACATTGTACA 59.127 40.000 0.00 0.00 35.42 2.90
2201 2220 5.872617 TGTCTAGTTGCCATACACATTGTAC 59.127 40.000 0.00 0.00 35.42 2.90
2202 2221 6.043854 TGTCTAGTTGCCATACACATTGTA 57.956 37.500 0.00 0.00 37.24 2.41
2203 2222 4.905429 TGTCTAGTTGCCATACACATTGT 58.095 39.130 0.00 0.00 0.00 2.71
2204 2223 5.585844 TCATGTCTAGTTGCCATACACATTG 59.414 40.000 0.00 0.00 0.00 2.82
2205 2224 5.744171 TCATGTCTAGTTGCCATACACATT 58.256 37.500 0.00 0.00 0.00 2.71
2206 2225 5.357742 TCATGTCTAGTTGCCATACACAT 57.642 39.130 0.00 0.00 0.00 3.21
2207 2226 4.817318 TCATGTCTAGTTGCCATACACA 57.183 40.909 0.00 0.00 0.00 3.72
2208 2227 6.072728 TGTTTTCATGTCTAGTTGCCATACAC 60.073 38.462 0.00 0.00 0.00 2.90
2209 2228 6.000840 TGTTTTCATGTCTAGTTGCCATACA 58.999 36.000 0.00 0.00 0.00 2.29
2210 2229 6.494893 TGTTTTCATGTCTAGTTGCCATAC 57.505 37.500 0.00 0.00 0.00 2.39
2244 2263 8.674263 TTCCAAATGCAATGAGTAACATTTTT 57.326 26.923 4.54 0.00 45.60 1.94
2245 2264 8.674263 TTTCCAAATGCAATGAGTAACATTTT 57.326 26.923 4.54 0.00 45.60 1.82
2246 2265 8.674263 TTTTCCAAATGCAATGAGTAACATTT 57.326 26.923 4.54 0.00 45.60 2.32
2248 2267 7.879160 ACATTTTCCAAATGCAATGAGTAACAT 59.121 29.630 8.77 0.00 41.45 2.71
2249 2268 7.215789 ACATTTTCCAAATGCAATGAGTAACA 58.784 30.769 8.77 0.00 32.07 2.41
2250 2269 7.656707 ACATTTTCCAAATGCAATGAGTAAC 57.343 32.000 8.77 0.00 32.07 2.50
2251 2270 9.770097 TTAACATTTTCCAAATGCAATGAGTAA 57.230 25.926 8.77 0.00 32.07 2.24
2252 2271 9.770097 TTTAACATTTTCCAAATGCAATGAGTA 57.230 25.926 8.77 0.00 32.07 2.59
2253 2272 8.674263 TTTAACATTTTCCAAATGCAATGAGT 57.326 26.923 8.77 0.00 32.07 3.41
2254 2273 9.549509 CATTTAACATTTTCCAAATGCAATGAG 57.450 29.630 15.96 0.00 33.18 2.90
2255 2274 9.064706 ACATTTAACATTTTCCAAATGCAATGA 57.935 25.926 21.84 6.15 40.43 2.57
2256 2275 9.119329 CACATTTAACATTTTCCAAATGCAATG 57.881 29.630 17.65 17.65 40.43 2.82
2257 2276 8.848182 ACACATTTAACATTTTCCAAATGCAAT 58.152 25.926 8.77 3.60 40.43 3.56
2258 2277 8.218338 ACACATTTAACATTTTCCAAATGCAA 57.782 26.923 8.77 2.11 40.43 4.08
2259 2278 7.798596 ACACATTTAACATTTTCCAAATGCA 57.201 28.000 8.77 0.00 40.43 3.96
2324 2343 9.899226 GCTGTTTTTGATGTCTAGTTTTTCTAT 57.101 29.630 0.00 0.00 0.00 1.98
2325 2344 9.120538 AGCTGTTTTTGATGTCTAGTTTTTCTA 57.879 29.630 0.00 0.00 0.00 2.10
2326 2345 8.000780 AGCTGTTTTTGATGTCTAGTTTTTCT 57.999 30.769 0.00 0.00 0.00 2.52
2327 2346 9.899226 ATAGCTGTTTTTGATGTCTAGTTTTTC 57.101 29.630 0.00 0.00 0.00 2.29
2331 2350 9.899226 GAAAATAGCTGTTTTTGATGTCTAGTT 57.101 29.630 20.38 0.00 31.80 2.24
2332 2351 9.066892 TGAAAATAGCTGTTTTTGATGTCTAGT 57.933 29.630 20.38 0.00 31.80 2.57
2333 2352 9.897744 TTGAAAATAGCTGTTTTTGATGTCTAG 57.102 29.630 20.38 0.00 31.80 2.43
2335 2354 9.034544 GTTTGAAAATAGCTGTTTTTGATGTCT 57.965 29.630 20.38 0.00 31.80 3.41
2336 2355 8.816144 TGTTTGAAAATAGCTGTTTTTGATGTC 58.184 29.630 20.38 8.91 31.80 3.06
2337 2356 8.715191 TGTTTGAAAATAGCTGTTTTTGATGT 57.285 26.923 20.38 0.00 31.80 3.06
2338 2357 9.588774 CATGTTTGAAAATAGCTGTTTTTGATG 57.411 29.630 20.38 13.87 31.80 3.07
2339 2358 9.328845 ACATGTTTGAAAATAGCTGTTTTTGAT 57.671 25.926 20.38 0.23 31.80 2.57
2340 2359 8.715191 ACATGTTTGAAAATAGCTGTTTTTGA 57.285 26.923 20.38 10.69 31.80 2.69
2345 2364 9.979578 TCATTAACATGTTTGAAAATAGCTGTT 57.020 25.926 17.78 0.00 0.00 3.16
2590 2609 9.515226 AGGAACTTTTTCTATACATGTTTAGCA 57.485 29.630 16.05 5.21 27.25 3.49
2591 2610 9.774742 CAGGAACTTTTTCTATACATGTTTAGC 57.225 33.333 16.05 2.76 34.60 3.09
2595 2614 9.520515 ACATCAGGAACTTTTTCTATACATGTT 57.479 29.630 2.30 0.00 34.60 2.71
2603 2622 9.932207 TTTCGTATACATCAGGAACTTTTTCTA 57.068 29.630 3.32 0.00 34.60 2.10
2604 2623 8.842358 TTTCGTATACATCAGGAACTTTTTCT 57.158 30.769 3.32 0.00 34.60 2.52
2619 2638 8.270111 CGCACACAATGTATATTTTCGTATACA 58.730 33.333 3.32 8.65 46.10 2.29
2620 2639 8.481641 TCGCACACAATGTATATTTTCGTATAC 58.518 33.333 0.00 0.00 37.81 1.47
2621 2640 8.576936 TCGCACACAATGTATATTTTCGTATA 57.423 30.769 0.00 0.00 0.00 1.47
2622 2641 7.471657 TCGCACACAATGTATATTTTCGTAT 57.528 32.000 0.00 0.00 0.00 3.06
2623 2642 6.889019 TCGCACACAATGTATATTTTCGTA 57.111 33.333 0.00 0.00 0.00 3.43
2624 2643 5.788055 TCGCACACAATGTATATTTTCGT 57.212 34.783 0.00 0.00 0.00 3.85
2625 2644 7.485825 TTTTCGCACACAATGTATATTTTCG 57.514 32.000 0.00 0.00 0.00 3.46
2626 2645 9.674208 CATTTTTCGCACACAATGTATATTTTC 57.326 29.630 0.00 0.00 0.00 2.29
2627 2646 9.202273 ACATTTTTCGCACACAATGTATATTTT 57.798 25.926 0.00 0.00 37.94 1.82
2628 2647 8.646356 CACATTTTTCGCACACAATGTATATTT 58.354 29.630 0.00 0.00 37.68 1.40
2629 2648 7.275341 CCACATTTTTCGCACACAATGTATATT 59.725 33.333 0.00 0.00 37.68 1.28
2630 2649 6.751425 CCACATTTTTCGCACACAATGTATAT 59.249 34.615 0.00 0.00 37.68 0.86
2631 2650 6.072452 TCCACATTTTTCGCACACAATGTATA 60.072 34.615 0.00 0.00 37.68 1.47
2632 2651 4.922692 CCACATTTTTCGCACACAATGTAT 59.077 37.500 0.00 0.00 37.68 2.29
2633 2652 4.036852 TCCACATTTTTCGCACACAATGTA 59.963 37.500 0.00 0.00 37.68 2.29
2634 2653 3.122297 CCACATTTTTCGCACACAATGT 58.878 40.909 0.00 0.00 39.85 2.71
2635 2654 3.182173 GTCCACATTTTTCGCACACAATG 59.818 43.478 0.00 0.00 33.58 2.82
2636 2655 3.181482 TGTCCACATTTTTCGCACACAAT 60.181 39.130 0.00 0.00 0.00 2.71
2637 2656 2.164422 TGTCCACATTTTTCGCACACAA 59.836 40.909 0.00 0.00 0.00 3.33
2638 2657 1.745653 TGTCCACATTTTTCGCACACA 59.254 42.857 0.00 0.00 0.00 3.72
2639 2658 2.483583 TGTCCACATTTTTCGCACAC 57.516 45.000 0.00 0.00 0.00 3.82
2640 2659 2.288091 CCATGTCCACATTTTTCGCACA 60.288 45.455 0.00 0.00 33.61 4.57
2641 2660 2.327568 CCATGTCCACATTTTTCGCAC 58.672 47.619 0.00 0.00 33.61 5.34
2642 2661 1.271934 CCCATGTCCACATTTTTCGCA 59.728 47.619 0.00 0.00 33.61 5.10
2643 2662 1.272212 ACCCATGTCCACATTTTTCGC 59.728 47.619 0.00 0.00 33.61 4.70
2644 2663 3.005261 TGAACCCATGTCCACATTTTTCG 59.995 43.478 0.00 0.00 33.61 3.46
2645 2664 4.599047 TGAACCCATGTCCACATTTTTC 57.401 40.909 0.00 0.00 33.61 2.29
2646 2665 5.365021 TTTGAACCCATGTCCACATTTTT 57.635 34.783 0.00 0.00 33.61 1.94
2647 2666 5.365021 TTTTGAACCCATGTCCACATTTT 57.635 34.783 0.00 0.00 33.61 1.82
2648 2667 5.365021 TTTTTGAACCCATGTCCACATTT 57.635 34.783 0.00 0.00 33.61 2.32
2680 2699 9.906660 GGTTTTTCCATTTTCTGTTTTTCTTTT 57.093 25.926 0.00 0.00 35.97 2.27
2681 2700 9.072375 TGGTTTTTCCATTTTCTGTTTTTCTTT 57.928 25.926 0.00 0.00 41.93 2.52
2682 2701 8.628630 TGGTTTTTCCATTTTCTGTTTTTCTT 57.371 26.923 0.00 0.00 41.93 2.52
2683 2702 8.628630 TTGGTTTTTCCATTTTCTGTTTTTCT 57.371 26.923 0.00 0.00 46.60 2.52
2684 2703 9.340695 CTTTGGTTTTTCCATTTTCTGTTTTTC 57.659 29.630 0.00 0.00 46.60 2.29
2685 2704 8.855110 ACTTTGGTTTTTCCATTTTCTGTTTTT 58.145 25.926 0.00 0.00 46.60 1.94
2686 2705 8.402798 ACTTTGGTTTTTCCATTTTCTGTTTT 57.597 26.923 0.00 0.00 46.60 2.43
2687 2706 7.994425 ACTTTGGTTTTTCCATTTTCTGTTT 57.006 28.000 0.00 0.00 46.60 2.83
2688 2707 9.161629 CTTACTTTGGTTTTTCCATTTTCTGTT 57.838 29.630 0.00 0.00 46.60 3.16
2689 2708 7.279981 GCTTACTTTGGTTTTTCCATTTTCTGT 59.720 33.333 0.00 0.00 46.60 3.41
2690 2709 7.279758 TGCTTACTTTGGTTTTTCCATTTTCTG 59.720 33.333 0.00 0.00 46.60 3.02
2691 2710 7.334858 TGCTTACTTTGGTTTTTCCATTTTCT 58.665 30.769 0.00 0.00 46.60 2.52
2692 2711 7.546778 TGCTTACTTTGGTTTTTCCATTTTC 57.453 32.000 0.00 0.00 46.60 2.29
2693 2712 7.391833 TGTTGCTTACTTTGGTTTTTCCATTTT 59.608 29.630 0.00 0.00 46.60 1.82
2694 2713 6.881602 TGTTGCTTACTTTGGTTTTTCCATTT 59.118 30.769 0.00 0.00 46.60 2.32
2695 2714 6.410540 TGTTGCTTACTTTGGTTTTTCCATT 58.589 32.000 0.00 0.00 46.60 3.16
2696 2715 5.983540 TGTTGCTTACTTTGGTTTTTCCAT 58.016 33.333 0.00 0.00 46.60 3.41
2697 2716 5.407407 TGTTGCTTACTTTGGTTTTTCCA 57.593 34.783 0.00 0.00 45.60 3.53
2698 2717 7.492994 TGTTATGTTGCTTACTTTGGTTTTTCC 59.507 33.333 0.00 0.00 0.00 3.13
2699 2718 8.413899 TGTTATGTTGCTTACTTTGGTTTTTC 57.586 30.769 0.00 0.00 0.00 2.29
2700 2719 8.779354 TTGTTATGTTGCTTACTTTGGTTTTT 57.221 26.923 0.00 0.00 0.00 1.94
2701 2720 7.494298 CCTTGTTATGTTGCTTACTTTGGTTTT 59.506 33.333 0.00 0.00 0.00 2.43
2702 2721 6.983890 CCTTGTTATGTTGCTTACTTTGGTTT 59.016 34.615 0.00 0.00 0.00 3.27
2703 2722 6.097696 ACCTTGTTATGTTGCTTACTTTGGTT 59.902 34.615 0.00 0.00 0.00 3.67
2704 2723 5.596772 ACCTTGTTATGTTGCTTACTTTGGT 59.403 36.000 0.00 0.00 0.00 3.67
2705 2724 5.920273 CACCTTGTTATGTTGCTTACTTTGG 59.080 40.000 0.00 0.00 0.00 3.28
2706 2725 6.734137 TCACCTTGTTATGTTGCTTACTTTG 58.266 36.000 0.00 0.00 0.00 2.77
2707 2726 6.952773 TCACCTTGTTATGTTGCTTACTTT 57.047 33.333 0.00 0.00 0.00 2.66
2708 2727 6.952773 TTCACCTTGTTATGTTGCTTACTT 57.047 33.333 0.00 0.00 0.00 2.24
2709 2728 6.952773 TTTCACCTTGTTATGTTGCTTACT 57.047 33.333 0.00 0.00 0.00 2.24
2710 2729 6.419710 GGTTTTCACCTTGTTATGTTGCTTAC 59.580 38.462 0.00 0.00 40.44 2.34
2711 2730 6.096987 TGGTTTTCACCTTGTTATGTTGCTTA 59.903 34.615 0.00 0.00 44.61 3.09
2712 2731 5.105146 TGGTTTTCACCTTGTTATGTTGCTT 60.105 36.000 0.00 0.00 44.61 3.91
2713 2732 4.404073 TGGTTTTCACCTTGTTATGTTGCT 59.596 37.500 0.00 0.00 44.61 3.91
2714 2733 4.688021 TGGTTTTCACCTTGTTATGTTGC 58.312 39.130 0.00 0.00 44.61 4.17
2715 2734 7.038659 TCTTTGGTTTTCACCTTGTTATGTTG 58.961 34.615 0.00 0.00 44.61 3.33
2716 2735 7.176589 TCTTTGGTTTTCACCTTGTTATGTT 57.823 32.000 0.00 0.00 44.61 2.71
2717 2736 6.783708 TCTTTGGTTTTCACCTTGTTATGT 57.216 33.333 0.00 0.00 44.61 2.29
2718 2737 9.757227 TTATTCTTTGGTTTTCACCTTGTTATG 57.243 29.630 0.00 0.00 44.61 1.90
2721 2740 9.508642 TTTTTATTCTTTGGTTTTCACCTTGTT 57.491 25.926 0.00 0.00 44.61 2.83
2746 2765 9.558396 TCCAATGCTTGTTTCTTTAATCATTTT 57.442 25.926 0.00 0.00 0.00 1.82
2747 2766 9.558396 TTCCAATGCTTGTTTCTTTAATCATTT 57.442 25.926 0.00 0.00 0.00 2.32
2748 2767 9.558396 TTTCCAATGCTTGTTTCTTTAATCATT 57.442 25.926 0.00 0.00 0.00 2.57
2749 2768 9.558396 TTTTCCAATGCTTGTTTCTTTAATCAT 57.442 25.926 0.00 0.00 0.00 2.45
2750 2769 8.954950 TTTTCCAATGCTTGTTTCTTTAATCA 57.045 26.923 0.00 0.00 0.00 2.57
2751 2770 9.260002 TCTTTTCCAATGCTTGTTTCTTTAATC 57.740 29.630 0.00 0.00 0.00 1.75
2752 2771 9.612066 TTCTTTTCCAATGCTTGTTTCTTTAAT 57.388 25.926 0.00 0.00 0.00 1.40
2753 2772 9.442047 TTTCTTTTCCAATGCTTGTTTCTTTAA 57.558 25.926 0.00 0.00 0.00 1.52
2754 2773 9.442047 TTTTCTTTTCCAATGCTTGTTTCTTTA 57.558 25.926 0.00 0.00 0.00 1.85
2755 2774 7.920160 TTTCTTTTCCAATGCTTGTTTCTTT 57.080 28.000 0.00 0.00 0.00 2.52
2756 2775 7.920160 TTTTCTTTTCCAATGCTTGTTTCTT 57.080 28.000 0.00 0.00 0.00 2.52
2757 2776 7.920160 TTTTTCTTTTCCAATGCTTGTTTCT 57.080 28.000 0.00 0.00 0.00 2.52
2789 2808 8.641541 TGAACAATAGCATTTTCCTCTCTTTTT 58.358 29.630 0.00 0.00 0.00 1.94
2790 2809 8.181904 TGAACAATAGCATTTTCCTCTCTTTT 57.818 30.769 0.00 0.00 0.00 2.27
2791 2810 7.765695 TGAACAATAGCATTTTCCTCTCTTT 57.234 32.000 0.00 0.00 0.00 2.52
2792 2811 7.388460 CTGAACAATAGCATTTTCCTCTCTT 57.612 36.000 0.00 0.00 0.00 2.85
2793 2812 6.998968 CTGAACAATAGCATTTTCCTCTCT 57.001 37.500 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.