Multiple sequence alignment - TraesCS3B01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G353600 chr3B 100.000 4149 0 0 1 4149 564046650 564042502 0.000000e+00 7662.0
1 TraesCS3B01G353600 chr3B 83.499 503 30 15 2374 2874 85351856 85351405 1.780000e-113 420.0
2 TraesCS3B01G353600 chr3B 78.846 312 28 16 1829 2131 59466744 59466462 4.260000e-40 176.0
3 TraesCS3B01G353600 chr3B 91.919 99 7 1 1342 1439 85352486 85352388 2.010000e-28 137.0
4 TraesCS3B01G353600 chr3D 91.753 2595 103 47 811 3377 431841827 431839316 0.000000e+00 3504.0
5 TraesCS3B01G353600 chr3D 79.873 631 54 30 3584 4149 431839117 431838495 1.080000e-105 394.0
6 TraesCS3B01G353600 chr3D 87.870 338 31 7 190 517 431842929 431842592 5.030000e-104 388.0
7 TraesCS3B01G353600 chr3D 97.561 164 4 0 519 682 431842096 431841933 8.780000e-72 281.0
8 TraesCS3B01G353600 chr3D 93.605 172 10 1 3 174 71527568 71527738 5.320000e-64 255.0
9 TraesCS3B01G353600 chr3D 86.567 134 7 5 3402 3534 431839252 431839129 2.010000e-28 137.0
10 TraesCS3B01G353600 chr3A 88.419 2625 133 71 811 3377 569238306 569235795 0.000000e+00 3005.0
11 TraesCS3B01G353600 chr3A 83.081 792 57 30 3382 4109 569235759 569234981 0.000000e+00 649.0
12 TraesCS3B01G353600 chr3A 86.377 345 31 10 179 509 569239331 569238989 3.050000e-96 363.0
13 TraesCS3B01G353600 chr3A 88.261 230 11 6 517 730 569238581 569238352 1.140000e-65 261.0
14 TraesCS3B01G353600 chr2D 94.767 172 9 0 1 172 591983180 591983009 6.840000e-68 268.0
15 TraesCS3B01G353600 chr2D 94.643 168 9 0 3 170 249399421 249399254 1.140000e-65 261.0
16 TraesCS3B01G353600 chr2D 93.605 172 11 0 1 172 591997884 591997713 1.480000e-64 257.0
17 TraesCS3B01G353600 chr7B 94.643 168 9 0 3 170 657200476 657200643 1.140000e-65 261.0
18 TraesCS3B01G353600 chr5D 94.643 168 9 0 3 170 350380312 350380479 1.140000e-65 261.0
19 TraesCS3B01G353600 chr4B 93.642 173 11 0 1 173 625223698 625223526 4.110000e-65 259.0
20 TraesCS3B01G353600 chr4B 93.043 115 8 0 1132 1246 39302628 39302514 7.130000e-38 169.0
21 TraesCS3B01G353600 chr5B 93.642 173 10 1 1 173 214123339 214123510 1.480000e-64 257.0
22 TraesCS3B01G353600 chr5B 93.103 174 12 0 1 174 588535443 588535270 5.320000e-64 255.0
23 TraesCS3B01G353600 chr4D 91.971 137 9 2 1299 1435 26926515 26926381 1.520000e-44 191.0
24 TraesCS3B01G353600 chr4D 91.071 112 10 0 1132 1243 26926632 26926521 7.180000e-33 152.0
25 TraesCS3B01G353600 chr4D 85.542 83 11 1 2554 2635 90989970 90989888 7.390000e-13 86.1
26 TraesCS3B01G353600 chr4A 94.545 110 6 0 1134 1243 576565706 576565815 1.980000e-38 171.0
27 TraesCS3B01G353600 chr4A 85.542 83 11 1 2554 2635 502902914 502902832 7.390000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G353600 chr3B 564042502 564046650 4148 True 7662.0 7662 100.0000 1 4149 1 chr3B.!!$R2 4148
1 TraesCS3B01G353600 chr3B 85351405 85352486 1081 True 278.5 420 87.7090 1342 2874 2 chr3B.!!$R3 1532
2 TraesCS3B01G353600 chr3D 431838495 431842929 4434 True 940.8 3504 88.7248 190 4149 5 chr3D.!!$R1 3959
3 TraesCS3B01G353600 chr3A 569234981 569239331 4350 True 1069.5 3005 86.5345 179 4109 4 chr3A.!!$R1 3930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 1338 0.035630 GCTGCACCATTCCTCAGAGT 60.036 55.000 0.0 0.0 0.00 3.24 F
797 1349 0.389166 CCTCAGAGTGTCTCGGCAAC 60.389 60.000 0.0 0.0 35.36 4.17 F
802 1354 0.458716 GAGTGTCTCGGCAACCTAGC 60.459 60.000 0.0 0.0 0.00 3.42 F
2248 2832 1.071542 TGTGGGTTGAGATTCTGCGAA 59.928 47.619 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2538 1.069296 TGCTGAAATGCGAAAAGGACG 60.069 47.619 0.00 0.00 35.36 4.79 R
2432 3148 1.080230 CCAGCTCCGTCACTGACAG 60.080 63.158 9.84 0.00 35.90 3.51 R
2788 3504 2.282180 TCCTTCTTGGCGTTGGGC 60.282 61.111 0.00 0.00 42.51 5.36 R
4114 4983 0.029834 CGATATGGCTTGGCAAGTGC 59.970 55.000 26.71 15.33 41.14 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.356186 GTCCTAAGACTTTTTCTAGTCCCA 57.644 41.667 0.00 0.00 44.50 4.37
30 31 6.399743 GTCCTAAGACTTTTTCTAGTCCCAG 58.600 44.000 0.00 0.00 44.50 4.45
31 32 5.484290 TCCTAAGACTTTTTCTAGTCCCAGG 59.516 44.000 11.96 11.96 44.50 4.45
32 33 4.642466 AAGACTTTTTCTAGTCCCAGGG 57.358 45.455 0.00 0.00 44.50 4.45
33 34 3.870559 AGACTTTTTCTAGTCCCAGGGA 58.129 45.455 3.01 3.01 44.50 4.20
34 35 4.041815 AAGACTTTTTCTAGTCCCAGGGAC 59.958 45.833 29.64 29.64 44.50 4.46
60 61 2.365408 AAAAAGACTCGCCCGTAGAG 57.635 50.000 0.00 0.00 41.27 2.43
64 65 4.738829 ACTCGCCCGTAGAGTCTT 57.261 55.556 0.00 0.00 44.87 3.01
65 66 2.958513 ACTCGCCCGTAGAGTCTTT 58.041 52.632 0.00 0.00 44.87 2.52
66 67 1.254954 ACTCGCCCGTAGAGTCTTTT 58.745 50.000 0.00 0.00 44.87 2.27
67 68 1.617357 ACTCGCCCGTAGAGTCTTTTT 59.383 47.619 0.00 0.00 44.87 1.94
68 69 2.260481 CTCGCCCGTAGAGTCTTTTTC 58.740 52.381 0.00 0.00 0.00 2.29
69 70 1.891150 TCGCCCGTAGAGTCTTTTTCT 59.109 47.619 0.00 0.00 0.00 2.52
70 71 3.084039 TCGCCCGTAGAGTCTTTTTCTA 58.916 45.455 0.00 0.00 0.00 2.10
71 72 3.128242 TCGCCCGTAGAGTCTTTTTCTAG 59.872 47.826 0.00 0.00 0.00 2.43
72 73 3.119566 CGCCCGTAGAGTCTTTTTCTAGT 60.120 47.826 0.00 0.00 0.00 2.57
73 74 4.422840 GCCCGTAGAGTCTTTTTCTAGTC 58.577 47.826 0.00 0.00 0.00 2.59
74 75 4.677514 GCCCGTAGAGTCTTTTTCTAGTCC 60.678 50.000 0.00 0.00 0.00 3.85
75 76 4.142204 CCCGTAGAGTCTTTTTCTAGTCCC 60.142 50.000 0.00 0.00 0.00 4.46
76 77 4.705991 CCGTAGAGTCTTTTTCTAGTCCCT 59.294 45.833 0.00 0.00 0.00 4.20
77 78 5.393243 CCGTAGAGTCTTTTTCTAGTCCCTG 60.393 48.000 0.00 0.00 0.00 4.45
78 79 5.183522 CGTAGAGTCTTTTTCTAGTCCCTGT 59.816 44.000 0.00 0.00 0.00 4.00
79 80 6.373774 CGTAGAGTCTTTTTCTAGTCCCTGTA 59.626 42.308 0.00 0.00 0.00 2.74
80 81 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
81 82 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
82 83 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
83 84 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
103 104 4.848562 AAAAATCCCTCTCGTTTGGTTC 57.151 40.909 0.00 0.00 0.00 3.62
104 105 2.491675 AATCCCTCTCGTTTGGTTCC 57.508 50.000 0.00 0.00 0.00 3.62
105 106 1.657804 ATCCCTCTCGTTTGGTTCCT 58.342 50.000 0.00 0.00 0.00 3.36
106 107 2.314071 TCCCTCTCGTTTGGTTCCTA 57.686 50.000 0.00 0.00 0.00 2.94
107 108 2.176889 TCCCTCTCGTTTGGTTCCTAG 58.823 52.381 0.00 0.00 0.00 3.02
108 109 1.207329 CCCTCTCGTTTGGTTCCTAGG 59.793 57.143 0.82 0.82 0.00 3.02
109 110 1.207329 CCTCTCGTTTGGTTCCTAGGG 59.793 57.143 9.46 0.00 0.00 3.53
110 111 2.176889 CTCTCGTTTGGTTCCTAGGGA 58.823 52.381 9.46 0.00 0.00 4.20
111 112 1.897802 TCTCGTTTGGTTCCTAGGGAC 59.102 52.381 12.35 12.35 0.00 4.46
112 113 1.900486 CTCGTTTGGTTCCTAGGGACT 59.100 52.381 20.08 0.00 46.37 3.85
113 114 2.302157 CTCGTTTGGTTCCTAGGGACTT 59.698 50.000 20.08 0.00 41.75 3.01
114 115 2.707257 TCGTTTGGTTCCTAGGGACTTT 59.293 45.455 20.08 0.00 41.75 2.66
115 116 3.136992 TCGTTTGGTTCCTAGGGACTTTT 59.863 43.478 20.08 0.00 41.75 2.27
116 117 3.887110 CGTTTGGTTCCTAGGGACTTTTT 59.113 43.478 20.08 0.00 41.75 1.94
117 118 5.065235 CGTTTGGTTCCTAGGGACTTTTTA 58.935 41.667 20.08 0.00 41.75 1.52
118 119 5.180680 CGTTTGGTTCCTAGGGACTTTTTAG 59.819 44.000 20.08 4.22 41.75 1.85
119 120 4.921644 TGGTTCCTAGGGACTTTTTAGG 57.078 45.455 20.08 0.00 41.75 2.69
120 121 3.590182 TGGTTCCTAGGGACTTTTTAGGG 59.410 47.826 20.08 0.00 41.75 3.53
121 122 3.848377 GGTTCCTAGGGACTTTTTAGGGA 59.152 47.826 20.08 0.00 41.75 4.20
122 123 4.324099 GGTTCCTAGGGACTTTTTAGGGAC 60.324 50.000 20.08 0.45 40.79 4.46
123 124 4.431158 TCCTAGGGACTTTTTAGGGACT 57.569 45.455 9.46 0.00 41.75 3.85
124 125 4.771338 TCCTAGGGACTTTTTAGGGACTT 58.229 43.478 9.46 0.00 39.49 3.01
125 126 5.167921 TCCTAGGGACTTTTTAGGGACTTT 58.832 41.667 9.46 0.00 39.49 2.66
126 127 5.613973 TCCTAGGGACTTTTTAGGGACTTTT 59.386 40.000 9.46 0.00 39.49 2.27
127 128 6.103649 TCCTAGGGACTTTTTAGGGACTTTTT 59.896 38.462 9.46 0.00 39.49 1.94
128 129 6.433404 CCTAGGGACTTTTTAGGGACTTTTTC 59.567 42.308 0.00 0.00 39.49 2.29
129 130 6.027025 AGGGACTTTTTAGGGACTTTTTCT 57.973 37.500 0.00 0.00 34.75 2.52
130 131 7.157947 AGGGACTTTTTAGGGACTTTTTCTA 57.842 36.000 0.00 0.00 34.75 2.10
131 132 7.232188 AGGGACTTTTTAGGGACTTTTTCTAG 58.768 38.462 0.00 0.00 34.75 2.43
132 133 7.002879 GGGACTTTTTAGGGACTTTTTCTAGT 58.997 38.462 0.00 0.00 41.75 2.57
133 134 7.174599 GGGACTTTTTAGGGACTTTTTCTAGTC 59.825 40.741 0.00 0.00 43.05 2.59
134 135 7.937942 GGACTTTTTAGGGACTTTTTCTAGTCT 59.062 37.037 0.00 0.00 43.26 3.24
135 136 8.905660 ACTTTTTAGGGACTTTTTCTAGTCTC 57.094 34.615 0.00 0.00 44.42 3.36
140 141 5.986501 GGGACTTTTTCTAGTCTCTGAGA 57.013 43.478 2.58 2.58 41.50 3.27
141 142 5.716094 GGGACTTTTTCTAGTCTCTGAGAC 58.284 45.833 26.43 26.43 45.38 3.36
164 165 8.890718 AGACTAAAAAGTCTCTAAACCAAACAC 58.109 33.333 2.22 0.00 45.09 3.32
165 166 7.993101 ACTAAAAAGTCTCTAAACCAAACACC 58.007 34.615 0.00 0.00 0.00 4.16
166 167 5.494632 AAAAGTCTCTAAACCAAACACCG 57.505 39.130 0.00 0.00 0.00 4.94
167 168 2.490991 AGTCTCTAAACCAAACACCGC 58.509 47.619 0.00 0.00 0.00 5.68
168 169 1.534163 GTCTCTAAACCAAACACCGCC 59.466 52.381 0.00 0.00 0.00 6.13
169 170 1.418637 TCTCTAAACCAAACACCGCCT 59.581 47.619 0.00 0.00 0.00 5.52
170 171 1.804748 CTCTAAACCAAACACCGCCTC 59.195 52.381 0.00 0.00 0.00 4.70
171 172 1.141254 TCTAAACCAAACACCGCCTCA 59.859 47.619 0.00 0.00 0.00 3.86
172 173 1.950909 CTAAACCAAACACCGCCTCAA 59.049 47.619 0.00 0.00 0.00 3.02
173 174 1.187087 AAACCAAACACCGCCTCAAA 58.813 45.000 0.00 0.00 0.00 2.69
174 175 1.187087 AACCAAACACCGCCTCAAAA 58.813 45.000 0.00 0.00 0.00 2.44
175 176 1.408969 ACCAAACACCGCCTCAAAAT 58.591 45.000 0.00 0.00 0.00 1.82
176 177 1.760029 ACCAAACACCGCCTCAAAATT 59.240 42.857 0.00 0.00 0.00 1.82
177 178 2.134346 CCAAACACCGCCTCAAAATTG 58.866 47.619 0.00 0.00 0.00 2.32
224 225 1.271325 TGTGCCCTACAGTGGACAATG 60.271 52.381 0.00 0.00 33.42 2.82
228 229 2.936993 GCCCTACAGTGGACAATGTGAG 60.937 54.545 14.81 6.38 40.12 3.51
233 234 3.415212 ACAGTGGACAATGTGAGATTGG 58.585 45.455 7.26 0.00 38.29 3.16
237 238 1.089920 GACAATGTGAGATTGGCGCT 58.910 50.000 7.64 0.00 33.56 5.92
239 240 2.874701 GACAATGTGAGATTGGCGCTAT 59.125 45.455 7.64 0.39 33.56 2.97
242 243 1.939974 TGTGAGATTGGCGCTATGAC 58.060 50.000 7.64 0.00 0.00 3.06
278 289 6.427853 ACTTGAAAATATTTTTGCAGGCTTCC 59.572 34.615 14.45 0.00 32.03 3.46
309 320 2.349580 CACGATGTATGTGGTGCTCTTG 59.650 50.000 0.00 0.00 33.69 3.02
311 322 2.292267 GATGTATGTGGTGCTCTTGGG 58.708 52.381 0.00 0.00 0.00 4.12
348 363 5.132502 TCAAACACCTATGGCTAATGGATG 58.867 41.667 0.00 0.00 0.00 3.51
363 378 2.481441 TGGATGTAGCAGTTGGGAGAT 58.519 47.619 0.00 0.00 0.00 2.75
384 399 2.093341 TGGTAGATTTAACCGGTCTGGC 60.093 50.000 8.04 0.00 43.94 4.85
421 436 6.401047 CGATATGTCGTGTGAGTCAACAAAAT 60.401 38.462 3.37 0.00 42.78 1.82
428 443 4.803613 GTGTGAGTCAACAAAATTTGGTCC 59.196 41.667 10.71 0.00 34.12 4.46
466 481 1.626356 ATGGTCTGGATGACGGTGGG 61.626 60.000 0.00 0.00 46.24 4.61
495 510 3.072184 AGTTGGCTATGGCTAGAAGATGG 59.928 47.826 0.00 0.00 38.73 3.51
499 514 3.367498 GGCTATGGCTAGAAGATGGTACG 60.367 52.174 0.00 0.00 38.73 3.67
500 515 2.821991 ATGGCTAGAAGATGGTACGC 57.178 50.000 0.00 0.00 0.00 4.42
509 524 3.070159 AGAAGATGGTACGCATGCATACT 59.930 43.478 21.91 4.65 0.00 2.12
511 526 2.365293 AGATGGTACGCATGCATACTCA 59.635 45.455 21.91 17.78 0.00 3.41
704 1256 2.122369 GGTCCCCATCTCCCCGAT 60.122 66.667 0.00 0.00 0.00 4.18
713 1265 2.639839 CCATCTCCCCGATACCAATCTT 59.360 50.000 0.00 0.00 0.00 2.40
734 1286 3.535691 GAGCGTCTCGTGTCCATAG 57.464 57.895 0.00 0.00 0.00 2.23
735 1287 1.015109 GAGCGTCTCGTGTCCATAGA 58.985 55.000 0.00 0.00 0.00 1.98
736 1288 0.733729 AGCGTCTCGTGTCCATAGAC 59.266 55.000 0.00 0.00 43.83 2.59
737 1289 0.248539 GCGTCTCGTGTCCATAGACC 60.249 60.000 0.00 0.00 42.81 3.85
739 1291 1.202154 CGTCTCGTGTCCATAGACCAC 60.202 57.143 0.00 0.00 42.81 4.16
741 1293 2.092323 TCTCGTGTCCATAGACCACAG 58.908 52.381 0.00 0.00 42.81 3.66
742 1294 1.135139 CTCGTGTCCATAGACCACAGG 59.865 57.143 0.00 0.00 42.81 4.00
743 1295 0.460284 CGTGTCCATAGACCACAGGC 60.460 60.000 0.00 0.00 42.81 4.85
744 1296 0.460284 GTGTCCATAGACCACAGGCG 60.460 60.000 0.00 0.00 42.81 5.52
745 1297 1.521681 GTCCATAGACCACAGGCGC 60.522 63.158 0.00 0.00 37.00 6.53
746 1298 2.586079 CCATAGACCACAGGCGCG 60.586 66.667 0.00 0.00 0.00 6.86
748 1300 3.461773 ATAGACCACAGGCGCGCT 61.462 61.111 32.29 14.46 0.00 5.92
777 1329 3.573558 CGTTACCGCTGCACCATT 58.426 55.556 0.00 0.00 0.00 3.16
778 1330 1.423845 CGTTACCGCTGCACCATTC 59.576 57.895 0.00 0.00 0.00 2.67
779 1331 1.800681 GTTACCGCTGCACCATTCC 59.199 57.895 0.00 0.00 0.00 3.01
780 1332 0.676782 GTTACCGCTGCACCATTCCT 60.677 55.000 0.00 0.00 0.00 3.36
781 1333 0.392461 TTACCGCTGCACCATTCCTC 60.392 55.000 0.00 0.00 0.00 3.71
782 1334 1.549243 TACCGCTGCACCATTCCTCA 61.549 55.000 0.00 0.00 0.00 3.86
783 1335 2.110967 CCGCTGCACCATTCCTCAG 61.111 63.158 0.00 0.00 0.00 3.35
784 1336 1.078918 CGCTGCACCATTCCTCAGA 60.079 57.895 0.00 0.00 0.00 3.27
785 1337 1.088340 CGCTGCACCATTCCTCAGAG 61.088 60.000 0.00 0.00 0.00 3.35
786 1338 0.035630 GCTGCACCATTCCTCAGAGT 60.036 55.000 0.00 0.00 0.00 3.24
787 1339 1.735386 CTGCACCATTCCTCAGAGTG 58.265 55.000 0.00 0.00 0.00 3.51
788 1340 1.002888 CTGCACCATTCCTCAGAGTGT 59.997 52.381 0.00 0.00 0.00 3.55
789 1341 1.002430 TGCACCATTCCTCAGAGTGTC 59.998 52.381 0.00 0.00 0.00 3.67
790 1342 1.277557 GCACCATTCCTCAGAGTGTCT 59.722 52.381 0.00 0.00 0.00 3.41
791 1343 2.676463 GCACCATTCCTCAGAGTGTCTC 60.676 54.545 0.00 0.00 0.00 3.36
792 1344 1.821753 ACCATTCCTCAGAGTGTCTCG 59.178 52.381 0.00 0.00 35.36 4.04
793 1345 1.135915 CCATTCCTCAGAGTGTCTCGG 59.864 57.143 0.00 0.00 35.36 4.63
794 1346 0.820871 ATTCCTCAGAGTGTCTCGGC 59.179 55.000 0.00 0.00 35.36 5.54
795 1347 0.539669 TTCCTCAGAGTGTCTCGGCA 60.540 55.000 0.00 0.00 35.36 5.69
796 1348 0.539669 TCCTCAGAGTGTCTCGGCAA 60.540 55.000 0.00 0.00 35.36 4.52
797 1349 0.389166 CCTCAGAGTGTCTCGGCAAC 60.389 60.000 0.00 0.00 35.36 4.17
798 1350 0.389166 CTCAGAGTGTCTCGGCAACC 60.389 60.000 0.00 0.00 35.36 3.77
799 1351 0.827925 TCAGAGTGTCTCGGCAACCT 60.828 55.000 0.00 0.00 35.36 3.50
800 1352 0.888619 CAGAGTGTCTCGGCAACCTA 59.111 55.000 0.00 0.00 35.36 3.08
801 1353 1.135257 CAGAGTGTCTCGGCAACCTAG 60.135 57.143 0.00 0.00 35.36 3.02
802 1354 0.458716 GAGTGTCTCGGCAACCTAGC 60.459 60.000 0.00 0.00 0.00 3.42
803 1355 1.805945 GTGTCTCGGCAACCTAGCG 60.806 63.158 0.00 0.00 34.64 4.26
804 1356 1.974875 TGTCTCGGCAACCTAGCGA 60.975 57.895 0.00 0.00 34.64 4.93
805 1357 1.226717 GTCTCGGCAACCTAGCGAG 60.227 63.158 9.61 9.61 36.89 5.03
806 1358 2.583593 CTCGGCAACCTAGCGAGC 60.584 66.667 4.18 0.00 34.64 5.03
807 1359 4.143333 TCGGCAACCTAGCGAGCC 62.143 66.667 7.31 7.31 43.61 4.70
809 1361 2.820037 GGCAACCTAGCGAGCCAC 60.820 66.667 11.33 0.00 46.26 5.01
827 1379 2.125753 GCACAGCGGACCAGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
828 1380 2.640302 GCACAGCGGACCAGAGAGA 61.640 63.158 0.00 0.00 0.00 3.10
979 1537 1.597742 CTGCGCCTGCCATAAGTAAT 58.402 50.000 4.18 0.00 41.78 1.89
1074 1632 3.222855 CGAGAGGAGGAGGCGCAT 61.223 66.667 10.83 0.00 0.00 4.73
1236 1794 2.515757 GCCCAAGGCTAGCAGCTC 60.516 66.667 18.24 0.00 46.69 4.09
1237 1795 2.191641 CCCAAGGCTAGCAGCTCC 59.808 66.667 18.24 0.00 41.99 4.70
1238 1796 2.673200 CCCAAGGCTAGCAGCTCCA 61.673 63.158 18.24 0.00 41.99 3.86
1239 1797 1.153208 CCAAGGCTAGCAGCTCCAG 60.153 63.158 18.24 0.00 41.99 3.86
1240 1798 1.818785 CAAGGCTAGCAGCTCCAGC 60.819 63.158 18.24 8.50 41.99 4.85
1889 2468 1.262151 CTGCATTGCTTTTGTTGGTGC 59.738 47.619 10.49 0.00 0.00 5.01
1959 2538 1.139654 GGGTACCGGAATGTTACTCCC 59.860 57.143 9.46 2.24 40.86 4.30
1960 2539 1.202452 GGTACCGGAATGTTACTCCCG 60.202 57.143 9.46 0.00 41.47 5.14
2059 2638 7.652507 GGATAGTGCCACTTCAATTACTAGTAC 59.347 40.741 1.02 0.00 0.00 2.73
2061 2640 7.713734 AGTGCCACTTCAATTACTAGTACTA 57.286 36.000 0.91 1.89 0.00 1.82
2077 2656 6.999871 ACTAGTACTACCATTTCTCTAGCTCC 59.000 42.308 0.00 0.00 0.00 4.70
2081 2660 5.983540 ACTACCATTTCTCTAGCTCCAAAG 58.016 41.667 0.00 0.00 0.00 2.77
2082 2661 4.917906 ACCATTTCTCTAGCTCCAAAGT 57.082 40.909 0.00 0.00 0.00 2.66
2093 2677 3.500343 AGCTCCAAAGTTACATGGCTTT 58.500 40.909 0.00 2.09 36.62 3.51
2094 2678 3.897505 AGCTCCAAAGTTACATGGCTTTT 59.102 39.130 0.00 0.00 36.62 2.27
2155 2739 5.269505 CCACTAGGTTTCTCCAGATACTG 57.730 47.826 0.00 0.00 39.02 2.74
2248 2832 1.071542 TGTGGGTTGAGATTCTGCGAA 59.928 47.619 0.00 0.00 0.00 4.70
2282 2866 3.452627 CCTCCTGTAGCCTACAATCACTT 59.547 47.826 5.98 0.00 38.38 3.16
2283 2867 4.080863 CCTCCTGTAGCCTACAATCACTTT 60.081 45.833 5.98 0.00 38.38 2.66
2284 2868 5.491982 CTCCTGTAGCCTACAATCACTTTT 58.508 41.667 5.98 0.00 38.38 2.27
2285 2869 5.876357 TCCTGTAGCCTACAATCACTTTTT 58.124 37.500 5.98 0.00 38.38 1.94
2286 2870 5.938125 TCCTGTAGCCTACAATCACTTTTTC 59.062 40.000 5.98 0.00 38.38 2.29
2287 2871 5.940470 CCTGTAGCCTACAATCACTTTTTCT 59.060 40.000 5.98 0.00 38.38 2.52
2288 2872 6.128172 CCTGTAGCCTACAATCACTTTTTCTG 60.128 42.308 5.98 0.00 38.38 3.02
2289 2873 4.773323 AGCCTACAATCACTTTTTCTGC 57.227 40.909 0.00 0.00 0.00 4.26
2290 2874 3.507622 AGCCTACAATCACTTTTTCTGCC 59.492 43.478 0.00 0.00 0.00 4.85
2291 2875 3.367395 GCCTACAATCACTTTTTCTGCCC 60.367 47.826 0.00 0.00 0.00 5.36
2308 2897 4.019051 TCTGCCCTCCATTATGATGTATGG 60.019 45.833 0.00 0.00 42.18 2.74
2335 2924 4.548494 CATGAAACATTTACAGTGCAGCA 58.452 39.130 0.00 0.00 0.00 4.41
2336 2925 4.227512 TGAAACATTTACAGTGCAGCAG 57.772 40.909 0.00 0.00 0.00 4.24
2337 2926 3.631686 TGAAACATTTACAGTGCAGCAGT 59.368 39.130 0.00 0.00 0.00 4.40
2338 2927 4.819088 TGAAACATTTACAGTGCAGCAGTA 59.181 37.500 1.26 0.00 0.00 2.74
2387 3095 7.727181 AGTAGGCTATAATGTTTGACTAGTGG 58.273 38.462 0.00 0.00 0.00 4.00
2388 3096 5.368989 AGGCTATAATGTTTGACTAGTGGC 58.631 41.667 0.00 0.00 0.00 5.01
2389 3097 5.104527 AGGCTATAATGTTTGACTAGTGGCA 60.105 40.000 0.00 0.00 0.00 4.92
2390 3098 5.237344 GGCTATAATGTTTGACTAGTGGCAG 59.763 44.000 0.00 0.00 0.00 4.85
2391 3099 5.817816 GCTATAATGTTTGACTAGTGGCAGT 59.182 40.000 0.00 0.00 0.00 4.40
2394 3102 4.617253 ATGTTTGACTAGTGGCAGTGTA 57.383 40.909 0.00 0.00 0.00 2.90
2432 3148 4.949856 ACTTTAATGATGATGGTGGGTGTC 59.050 41.667 0.00 0.00 0.00 3.67
2788 3504 1.106944 GCTTCTCCTCCTCCTCCTCG 61.107 65.000 0.00 0.00 0.00 4.63
2789 3505 1.076632 TTCTCCTCCTCCTCCTCGC 60.077 63.158 0.00 0.00 0.00 5.03
2795 3511 4.148825 CCTCCTCCTCGCCCAACG 62.149 72.222 0.00 0.00 45.62 4.10
3216 3964 3.082579 GCGGCTGCCTGCTAGTAGT 62.083 63.158 22.23 0.00 42.39 2.73
3219 3967 1.341531 CGGCTGCCTGCTAGTAGTATT 59.658 52.381 17.92 0.00 42.39 1.89
3230 3978 3.244215 GCTAGTAGTATTGGCCAGATGCA 60.244 47.826 5.11 0.00 43.89 3.96
3281 4029 1.292223 GCCTTCACGTGTAGGAGCA 59.708 57.895 36.73 6.07 34.90 4.26
3306 4054 0.110373 CTTCGCCGTTTTCCTTTCCG 60.110 55.000 0.00 0.00 0.00 4.30
3354 4102 1.065928 GCTAGACGACATGGACGGG 59.934 63.158 16.32 6.96 34.93 5.28
3377 4125 1.808411 CAACGATGGCTGTTGGTACT 58.192 50.000 9.10 0.00 42.27 2.73
3378 4126 2.967362 CAACGATGGCTGTTGGTACTA 58.033 47.619 9.10 0.00 42.27 1.82
3379 4127 2.667473 ACGATGGCTGTTGGTACTAC 57.333 50.000 0.00 0.00 0.00 2.73
3380 4128 1.135199 ACGATGGCTGTTGGTACTACG 60.135 52.381 0.00 0.00 0.00 3.51
3439 4226 1.336440 CGCATGGACACCTGAACAAAA 59.664 47.619 0.00 0.00 0.00 2.44
3451 4240 4.083696 ACCTGAACAAAATTTACCGTAGCG 60.084 41.667 0.00 0.00 0.00 4.26
3480 4269 7.281774 GCATCAAGAATCATTCAAGAGAGGTAA 59.718 37.037 0.00 0.00 0.00 2.85
3496 4285 6.431234 AGAGAGGTAAAAAGTGCCTATGTTTG 59.569 38.462 0.00 0.00 43.49 2.93
3498 4287 7.228590 AGAGGTAAAAAGTGCCTATGTTTGTA 58.771 34.615 0.00 0.00 43.49 2.41
3519 4311 1.134371 GGAGTAGGGTCAATGCACCTC 60.134 57.143 0.00 0.00 36.57 3.85
3553 4345 4.740268 CAAGTGCAGTTGTACTCCGTATA 58.260 43.478 23.55 0.00 40.09 1.47
3555 4347 6.500910 CAAGTGCAGTTGTACTCCGTATATA 58.499 40.000 23.55 0.00 40.09 0.86
3558 4350 6.994496 AGTGCAGTTGTACTCCGTATATACTA 59.006 38.462 11.05 0.00 36.19 1.82
3562 4354 5.942826 AGTTGTACTCCGTATATACTAGCCC 59.057 44.000 11.05 3.89 0.00 5.19
3569 4361 3.696051 CCGTATATACTAGCCCGCCTAAA 59.304 47.826 11.05 0.00 0.00 1.85
3575 4367 0.530870 CTAGCCCGCCTAAAGCAGAC 60.531 60.000 0.00 0.00 44.04 3.51
3581 4373 0.460987 CGCCTAAAGCAGACAGAGGG 60.461 60.000 0.00 0.00 44.04 4.30
3594 4386 2.688958 GACAGAGGGCGTAGAGTTGTAT 59.311 50.000 0.00 0.00 0.00 2.29
3620 4412 6.377327 TTCAAATGTTTGTCTGACTTCTCC 57.623 37.500 9.51 0.00 39.18 3.71
3679 4477 5.747197 GCATGTATTTTCAAATCCTGCTCTG 59.253 40.000 0.00 0.00 0.00 3.35
3706 4504 2.747989 CTGCATTGAATGTGCTCTGACT 59.252 45.455 7.05 0.00 42.92 3.41
3715 4513 3.631145 TGTGCTCTGACTTTTTGCATC 57.369 42.857 0.00 0.00 36.04 3.91
3725 4523 1.396996 CTTTTTGCATCGTCGTAGGGG 59.603 52.381 0.00 0.00 0.00 4.79
3735 4534 1.689233 TCGTAGGGGCTCCATTGCT 60.689 57.895 4.79 0.00 34.83 3.91
3750 4549 6.616774 TCCATTGCTTGTTTCAAAAATTCC 57.383 33.333 0.00 0.00 0.00 3.01
3768 4567 2.676822 TTCGGCGGCTCTCACTCT 60.677 61.111 7.21 0.00 0.00 3.24
3769 4568 2.606155 CTTCGGCGGCTCTCACTCTC 62.606 65.000 7.21 0.00 0.00 3.20
3770 4569 3.443925 CGGCGGCTCTCACTCTCA 61.444 66.667 7.61 0.00 0.00 3.27
3771 4570 2.780094 CGGCGGCTCTCACTCTCAT 61.780 63.158 7.61 0.00 0.00 2.90
3794 4593 1.147153 GGATAGCCAGCCACTGACC 59.853 63.158 0.00 0.00 32.44 4.02
3823 4625 3.254411 TCAAAATTGTGCTGCGAATACCA 59.746 39.130 0.00 0.00 0.00 3.25
3942 4788 3.635591 TGGATACAGTGCAGATCAGAGA 58.364 45.455 0.00 0.00 46.17 3.10
3992 4838 4.767255 GCAGCAGCGCCCTGTAGT 62.767 66.667 21.99 0.00 41.26 2.73
3995 4841 2.582498 GCAGCGCCCTGTAGTACG 60.582 66.667 2.29 0.00 41.26 3.67
3997 4843 1.064296 CAGCGCCCTGTAGTACGAG 59.936 63.158 2.29 0.00 34.31 4.18
3998 4844 1.077930 AGCGCCCTGTAGTACGAGA 60.078 57.895 2.29 0.00 0.00 4.04
3999 4845 0.679002 AGCGCCCTGTAGTACGAGAA 60.679 55.000 2.29 0.00 0.00 2.87
4000 4846 0.171903 GCGCCCTGTAGTACGAGAAA 59.828 55.000 0.00 0.00 0.00 2.52
4001 4847 1.905449 CGCCCTGTAGTACGAGAAAC 58.095 55.000 0.00 0.00 0.00 2.78
4002 4848 1.468736 CGCCCTGTAGTACGAGAAACC 60.469 57.143 0.00 0.00 0.00 3.27
4003 4849 1.134877 GCCCTGTAGTACGAGAAACCC 60.135 57.143 0.00 0.00 0.00 4.11
4005 4851 2.086869 CCTGTAGTACGAGAAACCCGA 58.913 52.381 0.00 0.00 0.00 5.14
4007 4853 3.005554 CTGTAGTACGAGAAACCCGAGA 58.994 50.000 0.00 0.00 0.00 4.04
4008 4854 3.411446 TGTAGTACGAGAAACCCGAGAA 58.589 45.455 0.00 0.00 0.00 2.87
4009 4855 3.820467 TGTAGTACGAGAAACCCGAGAAA 59.180 43.478 0.00 0.00 0.00 2.52
4068 4935 2.484062 CCATTGGCCCGTGCTCATC 61.484 63.158 0.00 0.00 37.74 2.92
4070 4937 1.452651 ATTGGCCCGTGCTCATCTG 60.453 57.895 0.00 0.00 37.74 2.90
4079 4946 3.372206 CCCGTGCTCATCTGAAAAGTTAG 59.628 47.826 0.00 0.00 0.00 2.34
4082 4949 4.686091 CGTGCTCATCTGAAAAGTTAGTGA 59.314 41.667 0.00 0.00 0.00 3.41
4109 4978 2.634453 TCATGTGTGAAGAAGAGGCTCA 59.366 45.455 18.26 0.00 0.00 4.26
4112 4981 2.435805 TGTGTGAAGAAGAGGCTCACTT 59.564 45.455 18.26 19.85 33.01 3.16
4114 4983 2.224378 TGTGAAGAAGAGGCTCACTTGG 60.224 50.000 24.07 0.00 33.01 3.61
4118 4988 0.036022 GAAGAGGCTCACTTGGCACT 59.964 55.000 18.26 0.00 35.25 4.40
4140 5010 2.143925 GCCAAGCCATATCGGTTACTC 58.856 52.381 0.00 0.00 36.97 2.59
4143 5013 3.181454 CCAAGCCATATCGGTTACTCCTT 60.181 47.826 0.00 0.00 36.97 3.36
4144 5014 4.451900 CAAGCCATATCGGTTACTCCTTT 58.548 43.478 0.00 0.00 36.97 3.11
4145 5015 4.338379 AGCCATATCGGTTACTCCTTTC 57.662 45.455 0.00 0.00 36.97 2.62
4146 5016 3.071167 AGCCATATCGGTTACTCCTTTCC 59.929 47.826 0.00 0.00 36.97 3.13
4147 5017 3.806157 GCCATATCGGTTACTCCTTTCCC 60.806 52.174 0.00 0.00 36.97 3.97
4148 5018 3.389983 CCATATCGGTTACTCCTTTCCCA 59.610 47.826 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.484290 CCTGGGACTAGAAAAAGTCTTAGGA 59.516 44.000 15.65 0.00 43.97 2.94
8 9 5.338463 CCCTGGGACTAGAAAAAGTCTTAGG 60.338 48.000 7.01 14.58 44.42 2.69
9 10 5.484290 TCCCTGGGACTAGAAAAAGTCTTAG 59.516 44.000 12.53 3.48 44.42 2.18
10 11 5.408824 TCCCTGGGACTAGAAAAAGTCTTA 58.591 41.667 12.53 0.00 44.42 2.10
11 12 4.240323 TCCCTGGGACTAGAAAAAGTCTT 58.760 43.478 12.53 0.00 44.42 3.01
12 13 3.870559 TCCCTGGGACTAGAAAAAGTCT 58.129 45.455 12.53 0.00 44.42 3.24
41 42 1.617357 ACTCTACGGGCGAGTCTTTTT 59.383 47.619 0.00 0.00 37.13 1.94
42 43 1.254954 ACTCTACGGGCGAGTCTTTT 58.745 50.000 0.00 0.00 37.13 2.27
43 44 2.958513 ACTCTACGGGCGAGTCTTT 58.041 52.632 0.00 0.00 37.13 2.52
44 45 4.738829 ACTCTACGGGCGAGTCTT 57.261 55.556 0.00 0.00 37.13 3.01
47 48 1.254954 AAAAGACTCTACGGGCGAGT 58.745 50.000 3.62 3.62 43.97 4.18
48 49 2.094649 AGAAAAAGACTCTACGGGCGAG 60.095 50.000 0.00 0.00 34.70 5.03
49 50 1.891150 AGAAAAAGACTCTACGGGCGA 59.109 47.619 0.00 0.00 0.00 5.54
50 51 2.365408 AGAAAAAGACTCTACGGGCG 57.635 50.000 0.00 0.00 0.00 6.13
51 52 4.422840 GACTAGAAAAAGACTCTACGGGC 58.577 47.826 0.00 0.00 0.00 6.13
52 53 4.142204 GGGACTAGAAAAAGACTCTACGGG 60.142 50.000 0.00 0.00 0.00 5.28
53 54 4.705991 AGGGACTAGAAAAAGACTCTACGG 59.294 45.833 0.00 0.00 36.02 4.02
54 55 5.183522 ACAGGGACTAGAAAAAGACTCTACG 59.816 44.000 0.00 0.00 36.02 3.51
55 56 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
56 57 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
57 58 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
58 59 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
59 60 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
60 61 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
82 83 3.572682 GGAACCAAACGAGAGGGATTTTT 59.427 43.478 0.00 0.00 0.00 1.94
83 84 3.154710 GGAACCAAACGAGAGGGATTTT 58.845 45.455 0.00 0.00 0.00 1.82
84 85 2.375509 AGGAACCAAACGAGAGGGATTT 59.624 45.455 0.00 0.00 0.00 2.17
85 86 1.985895 AGGAACCAAACGAGAGGGATT 59.014 47.619 0.00 0.00 0.00 3.01
86 87 1.657804 AGGAACCAAACGAGAGGGAT 58.342 50.000 0.00 0.00 0.00 3.85
87 88 2.176889 CTAGGAACCAAACGAGAGGGA 58.823 52.381 0.00 0.00 0.00 4.20
88 89 1.207329 CCTAGGAACCAAACGAGAGGG 59.793 57.143 1.05 0.00 0.00 4.30
89 90 1.207329 CCCTAGGAACCAAACGAGAGG 59.793 57.143 11.48 0.00 0.00 3.69
90 91 2.094130 GTCCCTAGGAACCAAACGAGAG 60.094 54.545 11.48 0.00 31.38 3.20
91 92 1.897802 GTCCCTAGGAACCAAACGAGA 59.102 52.381 11.48 0.00 31.38 4.04
92 93 1.900486 AGTCCCTAGGAACCAAACGAG 59.100 52.381 11.48 0.00 31.38 4.18
93 94 2.019807 AGTCCCTAGGAACCAAACGA 57.980 50.000 11.48 0.00 31.38 3.85
94 95 2.853235 AAGTCCCTAGGAACCAAACG 57.147 50.000 11.48 0.00 31.38 3.60
95 96 5.475909 CCTAAAAAGTCCCTAGGAACCAAAC 59.524 44.000 11.48 0.00 35.17 2.93
96 97 5.458508 CCCTAAAAAGTCCCTAGGAACCAAA 60.459 44.000 11.48 0.00 35.17 3.28
97 98 4.043686 CCCTAAAAAGTCCCTAGGAACCAA 59.956 45.833 11.48 0.00 35.17 3.67
98 99 3.590182 CCCTAAAAAGTCCCTAGGAACCA 59.410 47.826 11.48 0.00 35.17 3.67
99 100 3.848377 TCCCTAAAAAGTCCCTAGGAACC 59.152 47.826 11.48 0.00 35.17 3.62
100 101 4.535294 AGTCCCTAAAAAGTCCCTAGGAAC 59.465 45.833 11.48 0.00 35.17 3.62
101 102 4.771338 AGTCCCTAAAAAGTCCCTAGGAA 58.229 43.478 11.48 0.00 35.17 3.36
102 103 4.431158 AGTCCCTAAAAAGTCCCTAGGA 57.569 45.455 11.48 0.00 35.17 2.94
103 104 5.516059 AAAGTCCCTAAAAAGTCCCTAGG 57.484 43.478 0.06 0.06 33.30 3.02
104 105 7.232188 AGAAAAAGTCCCTAAAAAGTCCCTAG 58.768 38.462 0.00 0.00 0.00 3.02
105 106 7.157947 AGAAAAAGTCCCTAAAAAGTCCCTA 57.842 36.000 0.00 0.00 0.00 3.53
106 107 6.027025 AGAAAAAGTCCCTAAAAAGTCCCT 57.973 37.500 0.00 0.00 0.00 4.20
107 108 7.002879 ACTAGAAAAAGTCCCTAAAAAGTCCC 58.997 38.462 0.00 0.00 0.00 4.46
108 109 7.937942 AGACTAGAAAAAGTCCCTAAAAAGTCC 59.062 37.037 0.00 0.00 45.86 3.85
109 110 8.905660 AGACTAGAAAAAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 45.86 3.01
110 111 8.715842 AGAGACTAGAAAAAGTCCCTAAAAAGT 58.284 33.333 0.00 0.00 45.86 2.66
111 112 8.994170 CAGAGACTAGAAAAAGTCCCTAAAAAG 58.006 37.037 0.00 0.00 45.86 2.27
112 113 8.711170 TCAGAGACTAGAAAAAGTCCCTAAAAA 58.289 33.333 0.00 0.00 45.86 1.94
113 114 8.258850 TCAGAGACTAGAAAAAGTCCCTAAAA 57.741 34.615 0.00 0.00 45.86 1.52
114 115 7.728981 TCTCAGAGACTAGAAAAAGTCCCTAAA 59.271 37.037 0.00 0.00 45.86 1.85
115 116 7.177041 GTCTCAGAGACTAGAAAAAGTCCCTAA 59.823 40.741 21.67 0.00 45.86 2.69
116 117 6.660094 GTCTCAGAGACTAGAAAAAGTCCCTA 59.340 42.308 21.67 0.00 45.86 3.53
117 118 5.479027 GTCTCAGAGACTAGAAAAAGTCCCT 59.521 44.000 21.67 0.00 45.86 4.20
118 119 5.716094 GTCTCAGAGACTAGAAAAAGTCCC 58.284 45.833 21.67 0.00 45.86 4.46
139 140 8.127327 GGTGTTTGGTTTAGAGACTTTTTAGTC 58.873 37.037 0.00 0.00 39.00 2.59
140 141 7.201670 CGGTGTTTGGTTTAGAGACTTTTTAGT 60.202 37.037 0.00 0.00 0.00 2.24
141 142 7.130269 CGGTGTTTGGTTTAGAGACTTTTTAG 58.870 38.462 0.00 0.00 0.00 1.85
142 143 6.458615 GCGGTGTTTGGTTTAGAGACTTTTTA 60.459 38.462 0.00 0.00 0.00 1.52
143 144 5.677852 GCGGTGTTTGGTTTAGAGACTTTTT 60.678 40.000 0.00 0.00 0.00 1.94
144 145 4.201980 GCGGTGTTTGGTTTAGAGACTTTT 60.202 41.667 0.00 0.00 0.00 2.27
145 146 3.314357 GCGGTGTTTGGTTTAGAGACTTT 59.686 43.478 0.00 0.00 0.00 2.66
146 147 2.876550 GCGGTGTTTGGTTTAGAGACTT 59.123 45.455 0.00 0.00 0.00 3.01
147 148 2.490991 GCGGTGTTTGGTTTAGAGACT 58.509 47.619 0.00 0.00 0.00 3.24
148 149 1.534163 GGCGGTGTTTGGTTTAGAGAC 59.466 52.381 0.00 0.00 0.00 3.36
149 150 1.418637 AGGCGGTGTTTGGTTTAGAGA 59.581 47.619 0.00 0.00 0.00 3.10
150 151 1.804748 GAGGCGGTGTTTGGTTTAGAG 59.195 52.381 0.00 0.00 0.00 2.43
151 152 1.141254 TGAGGCGGTGTTTGGTTTAGA 59.859 47.619 0.00 0.00 0.00 2.10
152 153 1.600023 TGAGGCGGTGTTTGGTTTAG 58.400 50.000 0.00 0.00 0.00 1.85
153 154 2.054232 TTGAGGCGGTGTTTGGTTTA 57.946 45.000 0.00 0.00 0.00 2.01
154 155 1.187087 TTTGAGGCGGTGTTTGGTTT 58.813 45.000 0.00 0.00 0.00 3.27
155 156 1.187087 TTTTGAGGCGGTGTTTGGTT 58.813 45.000 0.00 0.00 0.00 3.67
156 157 1.408969 ATTTTGAGGCGGTGTTTGGT 58.591 45.000 0.00 0.00 0.00 3.67
157 158 2.134346 CAATTTTGAGGCGGTGTTTGG 58.866 47.619 0.00 0.00 0.00 3.28
158 159 3.090952 TCAATTTTGAGGCGGTGTTTG 57.909 42.857 0.00 0.00 32.50 2.93
159 160 3.492482 CCTTCAATTTTGAGGCGGTGTTT 60.492 43.478 0.00 0.00 38.61 2.83
160 161 2.035832 CCTTCAATTTTGAGGCGGTGTT 59.964 45.455 0.00 0.00 38.61 3.32
161 162 1.613437 CCTTCAATTTTGAGGCGGTGT 59.387 47.619 0.00 0.00 38.61 4.16
162 163 1.669795 GCCTTCAATTTTGAGGCGGTG 60.670 52.381 13.97 0.00 39.68 4.94
163 164 0.603065 GCCTTCAATTTTGAGGCGGT 59.397 50.000 13.97 0.00 39.68 5.68
164 165 0.602562 TGCCTTCAATTTTGAGGCGG 59.397 50.000 19.54 11.94 45.83 6.13
165 166 1.000385 TGTGCCTTCAATTTTGAGGCG 60.000 47.619 19.54 7.45 45.83 5.52
166 167 2.818130 TGTGCCTTCAATTTTGAGGC 57.182 45.000 18.74 18.74 44.50 4.70
167 168 5.127519 TGGATATGTGCCTTCAATTTTGAGG 59.872 40.000 0.00 0.00 38.61 3.86
168 169 6.095860 TCTGGATATGTGCCTTCAATTTTGAG 59.904 38.462 0.00 0.00 38.61 3.02
169 170 5.951148 TCTGGATATGTGCCTTCAATTTTGA 59.049 36.000 0.00 0.00 34.92 2.69
170 171 6.211587 TCTGGATATGTGCCTTCAATTTTG 57.788 37.500 0.00 0.00 0.00 2.44
171 172 6.183360 CCATCTGGATATGTGCCTTCAATTTT 60.183 38.462 0.00 0.00 37.39 1.82
172 173 5.303589 CCATCTGGATATGTGCCTTCAATTT 59.696 40.000 0.00 0.00 37.39 1.82
173 174 4.831155 CCATCTGGATATGTGCCTTCAATT 59.169 41.667 0.00 0.00 37.39 2.32
174 175 4.404640 CCATCTGGATATGTGCCTTCAAT 58.595 43.478 0.00 0.00 37.39 2.57
175 176 3.435457 CCCATCTGGATATGTGCCTTCAA 60.435 47.826 0.00 0.00 37.39 2.69
176 177 2.107031 CCCATCTGGATATGTGCCTTCA 59.893 50.000 0.00 0.00 37.39 3.02
177 178 2.373169 TCCCATCTGGATATGTGCCTTC 59.627 50.000 0.00 0.00 38.61 3.46
224 225 2.231215 AGTCATAGCGCCAATCTCAC 57.769 50.000 2.29 0.00 0.00 3.51
228 229 3.121944 CGTTCATAGTCATAGCGCCAATC 59.878 47.826 2.29 0.00 0.00 2.67
233 234 3.797256 AGTTTCGTTCATAGTCATAGCGC 59.203 43.478 0.00 0.00 0.00 5.92
278 289 3.798878 CACATACATCGTGTAGCTTGGAG 59.201 47.826 0.00 0.00 36.14 3.86
309 320 2.178912 TTGATCCTTCACACGTTCCC 57.821 50.000 0.00 0.00 0.00 3.97
311 322 3.303791 GGTGTTTGATCCTTCACACGTTC 60.304 47.826 11.39 0.00 35.69 3.95
348 363 3.031736 TCTACCATCTCCCAACTGCTAC 58.968 50.000 0.00 0.00 0.00 3.58
363 378 2.093341 GCCAGACCGGTTAAATCTACCA 60.093 50.000 9.42 0.00 35.31 3.25
421 436 0.768622 AGATTGTCACCCGGACCAAA 59.231 50.000 0.73 0.00 46.38 3.28
428 443 3.245797 CATATCGCTAGATTGTCACCCG 58.754 50.000 0.00 0.00 38.26 5.28
488 503 3.393800 AGTATGCATGCGTACCATCTTC 58.606 45.455 35.45 17.02 38.75 2.87
495 510 5.651172 TTTATGTGAGTATGCATGCGTAC 57.349 39.130 33.42 33.42 38.37 3.67
499 514 5.512788 GTGTGTTTTATGTGAGTATGCATGC 59.487 40.000 11.82 11.82 0.00 4.06
500 515 5.734035 CGTGTGTTTTATGTGAGTATGCATG 59.266 40.000 10.16 0.00 0.00 4.06
509 524 0.236187 GGCGCGTGTGTTTTATGTGA 59.764 50.000 8.43 0.00 0.00 3.58
511 526 1.577421 GGGCGCGTGTGTTTTATGT 59.423 52.632 8.43 0.00 0.00 2.29
694 1239 2.907042 GGAAGATTGGTATCGGGGAGAT 59.093 50.000 0.00 0.00 43.19 2.75
704 1256 1.404391 GAGACGCTCGGAAGATTGGTA 59.596 52.381 0.00 0.00 40.84 3.25
727 1279 1.521681 GCGCCTGTGGTCTATGGAC 60.522 63.158 0.00 0.00 41.43 4.02
730 1282 3.264897 GCGCGCCTGTGGTCTATG 61.265 66.667 23.24 0.00 0.00 2.23
731 1283 3.432051 GAGCGCGCCTGTGGTCTAT 62.432 63.158 30.33 4.23 46.77 1.98
732 1284 4.129737 GAGCGCGCCTGTGGTCTA 62.130 66.667 30.33 0.00 46.77 2.59
761 1313 0.676782 AGGAATGGTGCAGCGGTAAC 60.677 55.000 11.91 0.40 0.00 2.50
762 1314 0.392461 GAGGAATGGTGCAGCGGTAA 60.392 55.000 11.91 0.00 0.00 2.85
764 1316 2.045926 GAGGAATGGTGCAGCGGT 60.046 61.111 11.91 0.46 0.00 5.68
765 1317 2.046023 TGAGGAATGGTGCAGCGG 60.046 61.111 11.91 0.00 0.00 5.52
767 1319 0.035630 ACTCTGAGGAATGGTGCAGC 60.036 55.000 9.47 9.47 0.00 5.25
769 1321 1.002430 GACACTCTGAGGAATGGTGCA 59.998 52.381 9.85 0.00 0.00 4.57
770 1322 1.277557 AGACACTCTGAGGAATGGTGC 59.722 52.381 9.85 0.00 0.00 5.01
772 1324 1.821753 CGAGACACTCTGAGGAATGGT 59.178 52.381 9.85 0.00 0.00 3.55
773 1325 1.135915 CCGAGACACTCTGAGGAATGG 59.864 57.143 9.85 0.00 0.00 3.16
774 1326 1.470632 GCCGAGACACTCTGAGGAATG 60.471 57.143 9.85 0.91 0.00 2.67
775 1327 0.820871 GCCGAGACACTCTGAGGAAT 59.179 55.000 9.85 0.00 0.00 3.01
776 1328 0.539669 TGCCGAGACACTCTGAGGAA 60.540 55.000 9.85 0.00 0.00 3.36
777 1329 0.539669 TTGCCGAGACACTCTGAGGA 60.540 55.000 9.85 0.00 0.00 3.71
778 1330 0.389166 GTTGCCGAGACACTCTGAGG 60.389 60.000 9.85 0.76 0.00 3.86
779 1331 0.389166 GGTTGCCGAGACACTCTGAG 60.389 60.000 2.45 2.45 0.00 3.35
780 1332 0.827925 AGGTTGCCGAGACACTCTGA 60.828 55.000 0.00 0.00 0.00 3.27
781 1333 0.888619 TAGGTTGCCGAGACACTCTG 59.111 55.000 0.00 0.00 0.00 3.35
782 1334 1.178276 CTAGGTTGCCGAGACACTCT 58.822 55.000 0.00 0.00 0.00 3.24
783 1335 0.458716 GCTAGGTTGCCGAGACACTC 60.459 60.000 0.00 0.00 0.00 3.51
784 1336 1.592223 GCTAGGTTGCCGAGACACT 59.408 57.895 0.00 0.00 0.00 3.55
785 1337 1.805945 CGCTAGGTTGCCGAGACAC 60.806 63.158 0.00 0.00 0.00 3.67
786 1338 1.934220 CTCGCTAGGTTGCCGAGACA 61.934 60.000 10.17 0.00 36.48 3.41
787 1339 1.226717 CTCGCTAGGTTGCCGAGAC 60.227 63.158 10.17 0.00 36.48 3.36
788 1340 3.064987 GCTCGCTAGGTTGCCGAGA 62.065 63.158 17.48 0.00 36.48 4.04
789 1341 2.583593 GCTCGCTAGGTTGCCGAG 60.584 66.667 11.09 11.09 36.99 4.63
790 1342 4.143333 GGCTCGCTAGGTTGCCGA 62.143 66.667 0.00 0.00 35.79 5.54
792 1344 2.820037 GTGGCTCGCTAGGTTGCC 60.820 66.667 0.00 0.00 45.10 4.52
793 1345 3.188786 CGTGGCTCGCTAGGTTGC 61.189 66.667 0.00 0.00 0.00 4.17
882 1434 1.555967 GGGCAGAGGCAATTAAACCA 58.444 50.000 0.00 0.00 43.71 3.67
1889 2468 3.945921 TCGATCTGAACCAGTACCACTAG 59.054 47.826 0.00 0.00 32.61 2.57
1959 2538 1.069296 TGCTGAAATGCGAAAAGGACG 60.069 47.619 0.00 0.00 35.36 4.79
1960 2539 2.589014 CTGCTGAAATGCGAAAAGGAC 58.411 47.619 0.00 0.00 35.36 3.85
2059 2638 5.983540 ACTTTGGAGCTAGAGAAATGGTAG 58.016 41.667 0.00 0.00 0.00 3.18
2061 2640 4.917906 ACTTTGGAGCTAGAGAAATGGT 57.082 40.909 0.00 0.00 0.00 3.55
2077 2656 5.163513 CCAGCTAAAAGCCATGTAACTTTG 58.836 41.667 6.43 0.00 43.77 2.77
2081 2660 2.491693 TGCCAGCTAAAAGCCATGTAAC 59.508 45.455 0.00 0.00 43.77 2.50
2082 2661 2.801483 TGCCAGCTAAAAGCCATGTAA 58.199 42.857 0.00 0.00 43.77 2.41
2093 2677 4.301072 AACTGAAACCTATGCCAGCTAA 57.699 40.909 0.00 0.00 0.00 3.09
2094 2678 4.301072 AAACTGAAACCTATGCCAGCTA 57.699 40.909 0.00 0.00 0.00 3.32
2166 2750 2.819595 GGATTCGCGCCAAGAGCA 60.820 61.111 0.00 0.00 44.04 4.26
2173 2757 1.587088 CAAAGCATGGATTCGCGCC 60.587 57.895 0.00 0.00 0.00 6.53
2174 2758 3.987187 CAAAGCATGGATTCGCGC 58.013 55.556 0.00 0.00 0.00 6.86
2200 2784 4.154015 CGCAGTTATTGTGATTTGTGGAGA 59.846 41.667 0.00 0.00 39.74 3.71
2201 2785 4.406069 CGCAGTTATTGTGATTTGTGGAG 58.594 43.478 0.00 0.00 39.74 3.86
2203 2787 3.500982 CCGCAGTTATTGTGATTTGTGG 58.499 45.455 0.00 0.00 39.74 4.17
2248 2832 3.137360 GCTACAGGAGGGGATGAAAGATT 59.863 47.826 0.00 0.00 0.00 2.40
2282 2866 4.870636 ACATCATAATGGAGGGCAGAAAA 58.129 39.130 0.00 0.00 37.19 2.29
2283 2867 4.524802 ACATCATAATGGAGGGCAGAAA 57.475 40.909 0.00 0.00 37.19 2.52
2284 2868 5.515359 CCATACATCATAATGGAGGGCAGAA 60.515 44.000 0.00 0.00 40.64 3.02
2285 2869 4.019051 CCATACATCATAATGGAGGGCAGA 60.019 45.833 0.00 0.00 40.64 4.26
2286 2870 4.267536 CCATACATCATAATGGAGGGCAG 58.732 47.826 0.00 0.00 40.64 4.85
2287 2871 4.305539 CCATACATCATAATGGAGGGCA 57.694 45.455 0.00 0.00 40.64 5.36
2290 2874 2.679837 GCGCCATACATCATAATGGAGG 59.320 50.000 0.00 0.00 44.62 4.30
2291 2875 2.679837 GGCGCCATACATCATAATGGAG 59.320 50.000 24.80 3.32 44.62 3.86
2308 2897 2.094752 ACTGTAAATGTTTCATGGGCGC 60.095 45.455 0.00 0.00 0.00 6.53
2335 2924 5.047235 GTGAACACCATCAGACCTACTTACT 60.047 44.000 0.00 0.00 0.00 2.24
2336 2925 5.169295 GTGAACACCATCAGACCTACTTAC 58.831 45.833 0.00 0.00 0.00 2.34
2337 2926 5.401531 GTGAACACCATCAGACCTACTTA 57.598 43.478 0.00 0.00 0.00 2.24
2338 2927 4.273148 GTGAACACCATCAGACCTACTT 57.727 45.455 0.00 0.00 0.00 2.24
2387 3095 7.611213 AGTAAAACACCATTAGATACACTGC 57.389 36.000 0.00 0.00 0.00 4.40
2418 3126 1.280133 CTGACAGACACCCACCATCAT 59.720 52.381 0.00 0.00 0.00 2.45
2432 3148 1.080230 CCAGCTCCGTCACTGACAG 60.080 63.158 9.84 0.00 35.90 3.51
2788 3504 2.282180 TCCTTCTTGGCGTTGGGC 60.282 61.111 0.00 0.00 42.51 5.36
2789 3505 2.325082 CGTCCTTCTTGGCGTTGGG 61.325 63.158 0.00 0.00 35.26 4.12
2816 3538 4.719369 GGTGAAGACGCCGACGCT 62.719 66.667 0.00 0.00 45.53 5.07
3121 3862 9.147732 AGAAAAAGAATGGTTAATTTGAGGAGT 57.852 29.630 0.00 0.00 0.00 3.85
3124 3865 9.631452 GAGAGAAAAAGAATGGTTAATTTGAGG 57.369 33.333 0.00 0.00 0.00 3.86
3216 3964 3.132646 GGACAAAATGCATCTGGCCAATA 59.867 43.478 22.97 0.00 43.89 1.90
3219 3967 0.896923 GGACAAAATGCATCTGGCCA 59.103 50.000 22.97 4.71 43.89 5.36
3230 3978 7.722949 ACATTCACAGGAATATGGACAAAAT 57.277 32.000 0.00 0.00 41.78 1.82
3325 4073 4.188247 TGTCGTCTAGCAAATTAGCACT 57.812 40.909 0.00 0.00 36.85 4.40
3354 4102 3.773117 CAACAGCCATCGTTGGTTC 57.227 52.632 13.90 0.00 45.57 3.62
3360 4108 1.135199 CGTAGTACCAACAGCCATCGT 60.135 52.381 0.00 0.00 0.00 3.73
3369 4117 0.665369 AGCACGCACGTAGTACCAAC 60.665 55.000 0.00 0.00 41.61 3.77
3377 4125 1.153842 CCAGATGAGCACGCACGTA 60.154 57.895 0.00 0.00 0.00 3.57
3378 4126 2.433145 CCAGATGAGCACGCACGT 60.433 61.111 0.00 0.00 0.00 4.49
3379 4127 2.889154 TAGCCAGATGAGCACGCACG 62.889 60.000 0.00 0.00 0.00 5.34
3380 4128 1.153568 TAGCCAGATGAGCACGCAC 60.154 57.895 0.00 0.00 0.00 5.34
3451 4240 5.821470 TCTCTTGAATGATTCTTGATGCTCC 59.179 40.000 6.73 0.00 0.00 4.70
3462 4251 7.309438 GGCACTTTTTACCTCTCTTGAATGATT 60.309 37.037 0.00 0.00 0.00 2.57
3463 4252 6.151817 GGCACTTTTTACCTCTCTTGAATGAT 59.848 38.462 0.00 0.00 0.00 2.45
3464 4253 5.473504 GGCACTTTTTACCTCTCTTGAATGA 59.526 40.000 0.00 0.00 0.00 2.57
3465 4254 5.474876 AGGCACTTTTTACCTCTCTTGAATG 59.525 40.000 0.00 0.00 27.25 2.67
3480 4269 5.631119 ACTCCTACAAACATAGGCACTTTT 58.369 37.500 0.00 0.00 41.51 2.27
3496 4285 2.158943 GGTGCATTGACCCTACTCCTAC 60.159 54.545 0.00 0.00 0.00 3.18
3498 4287 0.912486 GGTGCATTGACCCTACTCCT 59.088 55.000 0.00 0.00 0.00 3.69
3519 4311 1.067916 GCACTTGCACAAACCAGGG 59.932 57.895 0.00 0.00 41.59 4.45
3553 4345 1.344763 CTGCTTTAGGCGGGCTAGTAT 59.655 52.381 11.34 0.00 45.43 2.12
3555 4347 0.976073 TCTGCTTTAGGCGGGCTAGT 60.976 55.000 11.34 0.00 46.69 2.57
3562 4354 0.460987 CCCTCTGTCTGCTTTAGGCG 60.461 60.000 0.00 0.00 45.43 5.52
3569 4361 1.000771 TCTACGCCCTCTGTCTGCT 60.001 57.895 0.00 0.00 0.00 4.24
3575 4367 3.802948 AATACAACTCTACGCCCTCTG 57.197 47.619 0.00 0.00 0.00 3.35
3581 4373 8.502161 AACATTTGAAAAATACAACTCTACGC 57.498 30.769 0.00 0.00 0.00 4.42
3594 4386 7.759433 GGAGAAGTCAGACAAACATTTGAAAAA 59.241 33.333 11.24 0.00 40.55 1.94
3617 4409 0.246635 ATTCCAAGACGACCACGGAG 59.753 55.000 0.00 0.00 44.46 4.63
3620 4412 2.933495 TCTATTCCAAGACGACCACG 57.067 50.000 0.00 0.00 45.75 4.94
3679 4477 0.458669 CACATTCAATGCAGAGCCCC 59.541 55.000 0.00 0.00 0.00 5.80
3706 4504 1.444836 CCCCTACGACGATGCAAAAA 58.555 50.000 0.00 0.00 0.00 1.94
3715 4513 1.227263 CAATGGAGCCCCTACGACG 60.227 63.158 0.00 0.00 0.00 5.12
3725 4523 5.678132 ATTTTTGAAACAAGCAATGGAGC 57.322 34.783 0.00 0.00 0.00 4.70
3750 4549 2.202676 GAGTGAGAGCCGCCGAAG 60.203 66.667 0.00 0.00 0.00 3.79
3768 4567 1.776063 TGGCTGGCTATCCATGAATGA 59.224 47.619 2.00 0.00 42.51 2.57
3769 4568 1.884579 GTGGCTGGCTATCCATGAATG 59.115 52.381 0.00 0.00 42.51 2.67
3770 4569 1.779092 AGTGGCTGGCTATCCATGAAT 59.221 47.619 0.00 0.00 42.51 2.57
3771 4570 1.134007 CAGTGGCTGGCTATCCATGAA 60.134 52.381 0.00 0.00 42.51 2.57
3794 4593 1.794116 CAGCACAATTTTGAAAGCGGG 59.206 47.619 0.00 0.00 32.48 6.13
3823 4625 3.812053 GCCATCGATAAGATTTGCTCAGT 59.188 43.478 0.00 0.00 37.52 3.41
3942 4788 4.156190 GGTCCATCGTATGATCGTATCACT 59.844 45.833 0.00 0.00 43.01 3.41
3992 4838 4.053295 CAAACTTTCTCGGGTTTCTCGTA 58.947 43.478 0.00 0.00 34.01 3.43
3995 4841 2.031069 GGCAAACTTTCTCGGGTTTCTC 60.031 50.000 0.00 0.00 34.01 2.87
3997 4843 1.334689 CGGCAAACTTTCTCGGGTTTC 60.335 52.381 0.00 0.00 34.01 2.78
3998 4844 0.666374 CGGCAAACTTTCTCGGGTTT 59.334 50.000 0.00 0.00 36.27 3.27
3999 4845 0.464916 ACGGCAAACTTTCTCGGGTT 60.465 50.000 0.00 0.00 0.00 4.11
4000 4846 0.883370 GACGGCAAACTTTCTCGGGT 60.883 55.000 0.00 0.00 0.00 5.28
4001 4847 1.866925 GACGGCAAACTTTCTCGGG 59.133 57.895 0.00 0.00 0.00 5.14
4002 4848 1.491563 CGACGGCAAACTTTCTCGG 59.508 57.895 0.00 0.00 0.00 4.63
4003 4849 1.219522 ACCGACGGCAAACTTTCTCG 61.220 55.000 15.39 0.00 0.00 4.04
4005 4851 1.064952 CAAACCGACGGCAAACTTTCT 59.935 47.619 15.39 0.00 0.00 2.52
4007 4853 0.526739 GCAAACCGACGGCAAACTTT 60.527 50.000 15.39 3.48 0.00 2.66
4008 4854 1.065109 GCAAACCGACGGCAAACTT 59.935 52.632 15.39 0.00 0.00 2.66
4009 4855 0.533308 TAGCAAACCGACGGCAAACT 60.533 50.000 15.39 9.50 0.00 2.66
4033 4894 2.092882 GGCCGACGAACTTTCTCGG 61.093 63.158 18.08 18.08 43.93 4.63
4068 4935 9.013490 CACATGACTTTTTCACTAACTTTTCAG 57.987 33.333 0.00 0.00 36.92 3.02
4070 4937 8.798153 CACACATGACTTTTTCACTAACTTTTC 58.202 33.333 0.00 0.00 36.92 2.29
4079 4946 6.785191 TCTTCTTCACACATGACTTTTTCAC 58.215 36.000 0.00 0.00 36.92 3.18
4082 4949 5.221126 GCCTCTTCTTCACACATGACTTTTT 60.221 40.000 0.00 0.00 33.38 1.94
4114 4983 0.029834 CGATATGGCTTGGCAAGTGC 59.970 55.000 26.71 15.33 41.14 4.40
4118 4988 2.092646 AGTAACCGATATGGCTTGGCAA 60.093 45.455 0.00 0.00 43.94 4.52
4123 4993 4.444449 GGAAAGGAGTAACCGATATGGCTT 60.444 45.833 0.00 0.00 43.94 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.