Multiple sequence alignment - TraesCS3B01G352800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G352800 chr3B 100.000 4568 0 0 1 4568 562443480 562448047 0.000000e+00 8436.0
1 TraesCS3B01G352800 chr3B 83.776 715 83 13 2884 3593 70005596 70006282 0.000000e+00 647.0
2 TraesCS3B01G352800 chr3B 92.893 197 11 3 1 195 676607678 676607483 2.690000e-72 283.0
3 TraesCS3B01G352800 chr3B 91.724 145 11 1 2826 2970 182339098 182338955 2.790000e-47 200.0
4 TraesCS3B01G352800 chr3B 91.870 123 10 0 3071 3193 47630287 47630409 6.080000e-39 172.0
5 TraesCS3B01G352800 chr3B 87.234 94 10 2 2559 2650 815339952 815340045 6.250000e-19 106.0
6 TraesCS3B01G352800 chr3B 92.727 55 4 0 2488 2542 47610264 47610318 3.790000e-11 80.5
7 TraesCS3B01G352800 chr3A 87.413 2018 141 57 588 2531 568146865 568148843 0.000000e+00 2215.0
8 TraesCS3B01G352800 chr3A 95.529 850 33 5 3001 3847 568149673 568150520 0.000000e+00 1354.0
9 TraesCS3B01G352800 chr3A 87.150 607 44 16 3991 4568 568150617 568151218 0.000000e+00 658.0
10 TraesCS3B01G352800 chr3A 95.639 321 9 2 2694 3014 568149190 568149505 1.130000e-140 510.0
11 TraesCS3B01G352800 chr3A 80.893 403 36 23 195 578 568146286 568146666 3.480000e-71 279.0
12 TraesCS3B01G352800 chr3A 86.179 246 31 3 2559 2802 10621619 10621863 3.500000e-66 263.0
13 TraesCS3B01G352800 chr3A 94.444 90 3 2 3842 3930 568150541 568150629 2.220000e-28 137.0
14 TraesCS3B01G352800 chr3A 94.118 51 3 0 2492 2542 82905718 82905768 1.360000e-10 78.7
15 TraesCS3B01G352800 chr3D 94.365 1260 56 10 2592 3847 430148454 430149702 0.000000e+00 1919.0
16 TraesCS3B01G352800 chr3D 88.920 1444 96 29 578 1998 430146610 430148012 0.000000e+00 1722.0
17 TraesCS3B01G352800 chr3D 89.358 545 34 10 4045 4568 430149856 430150397 0.000000e+00 664.0
18 TraesCS3B01G352800 chr3D 90.759 303 19 5 2091 2388 430148155 430148453 3.310000e-106 396.0
19 TraesCS3B01G352800 chr3D 88.552 297 31 2 2826 3119 570263842 570264138 1.560000e-94 357.0
20 TraesCS3B01G352800 chr3D 87.745 204 23 2 2600 2802 208832898 208833100 2.120000e-58 237.0
21 TraesCS3B01G352800 chr3D 92.063 126 10 0 3071 3196 380274797 380274672 1.310000e-40 178.0
22 TraesCS3B01G352800 chr3D 91.870 123 10 0 3071 3193 401004211 401004333 6.080000e-39 172.0
23 TraesCS3B01G352800 chr3D 80.617 227 28 12 237 450 430145706 430145929 1.320000e-35 161.0
24 TraesCS3B01G352800 chr3D 79.213 178 18 11 2491 2650 380281101 380280925 6.250000e-19 106.0
25 TraesCS3B01G352800 chr5A 88.079 302 33 2 2826 3124 547799081 547798780 5.620000e-94 355.0
26 TraesCS3B01G352800 chr2D 87.748 302 33 3 2826 3124 578047344 578047044 2.620000e-92 350.0
27 TraesCS3B01G352800 chr2D 90.196 153 15 0 2719 2871 95199931 95199779 2.790000e-47 200.0
28 TraesCS3B01G352800 chr1D 87.748 302 34 2 2826 3124 58111596 58111295 2.620000e-92 350.0
29 TraesCS3B01G352800 chr1B 87.584 298 35 2 2826 3121 27366759 27367056 1.220000e-90 344.0
30 TraesCS3B01G352800 chr1B 87.584 298 35 2 2826 3121 27395968 27396265 1.220000e-90 344.0
31 TraesCS3B01G352800 chr1B 84.643 280 38 5 2529 2805 372096912 372096635 1.620000e-69 274.0
32 TraesCS3B01G352800 chr1B 91.414 198 15 2 1 196 319900803 319901000 2.090000e-68 270.0
33 TraesCS3B01G352800 chr1B 88.945 199 19 3 1 197 403418918 403418721 4.570000e-60 243.0
34 TraesCS3B01G352800 chr5B 91.176 204 15 3 1 202 526730063 526730265 1.620000e-69 274.0
35 TraesCS3B01G352800 chr5B 91.803 122 10 0 3072 3193 78212458 78212579 2.190000e-38 171.0
36 TraesCS3B01G352800 chr4A 89.320 206 19 3 1 203 513094932 513094727 5.860000e-64 255.0
37 TraesCS3B01G352800 chr4A 91.803 122 10 0 3072 3193 17750096 17749975 2.190000e-38 171.0
38 TraesCS3B01G352800 chr4A 92.727 55 4 0 2488 2542 740035217 740035271 3.790000e-11 80.5
39 TraesCS3B01G352800 chr7D 85.200 250 33 4 2559 2805 513994205 513993957 2.110000e-63 254.0
40 TraesCS3B01G352800 chr7D 91.200 125 11 0 3072 3196 566799054 566798930 2.190000e-38 171.0
41 TraesCS3B01G352800 chr7B 85.000 240 33 3 2565 2802 263152649 263152887 1.640000e-59 241.0
42 TraesCS3B01G352800 chr7B 88.889 153 16 1 2719 2871 317764432 317764583 2.170000e-43 187.0
43 TraesCS3B01G352800 chr6A 78.919 185 17 11 2488 2650 256835160 256835344 6.250000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G352800 chr3B 562443480 562448047 4567 False 8436.000000 8436 100.0000 1 4568 1 chr3B.!!$F4 4567
1 TraesCS3B01G352800 chr3B 70005596 70006282 686 False 647.000000 647 83.7760 2884 3593 1 chr3B.!!$F3 709
2 TraesCS3B01G352800 chr3A 568146286 568151218 4932 False 858.833333 2215 90.1780 195 4568 6 chr3A.!!$F3 4373
3 TraesCS3B01G352800 chr3D 430145706 430150397 4691 False 972.400000 1919 88.8038 237 4568 5 chr3D.!!$F4 4331

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1601 0.037734 GTTGGGTGGGATTTCTCGGT 59.962 55.0 0.0 0.0 0.00 4.69 F
2063 2754 0.107993 GGAGCACTGCAGCAGTATCA 60.108 55.0 27.8 0.0 43.43 2.15 F
2542 3290 0.178992 AGAACATGGTGTGTGGGTGG 60.179 55.0 0.0 0.0 41.14 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 3115 0.120991 AAAAATGAATGGGGCCCCCT 59.879 50.0 38.81 27.33 45.7 4.79 R
3555 4669 0.179073 AATCTGGTCATCTTCGGCCG 60.179 55.0 22.12 22.12 0.0 6.13 R
4028 5169 0.179197 CAGCGCATGAGCTTTGTGAG 60.179 55.0 22.17 5.49 46.8 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.626321 GTGTAACTGCTTGTAGACGAAC 57.374 45.455 0.00 0.00 0.00 3.95
34 35 4.296690 GTGTAACTGCTTGTAGACGAACT 58.703 43.478 0.00 0.00 0.00 3.01
35 36 5.455392 GTGTAACTGCTTGTAGACGAACTA 58.545 41.667 0.00 0.00 0.00 2.24
36 37 6.091437 GTGTAACTGCTTGTAGACGAACTAT 58.909 40.000 0.00 0.00 33.39 2.12
37 38 6.033619 GTGTAACTGCTTGTAGACGAACTATG 59.966 42.308 0.00 0.00 33.39 2.23
38 39 5.386958 AACTGCTTGTAGACGAACTATGA 57.613 39.130 0.00 0.00 33.39 2.15
39 40 4.987832 ACTGCTTGTAGACGAACTATGAG 58.012 43.478 0.00 0.00 33.39 2.90
40 41 4.459685 ACTGCTTGTAGACGAACTATGAGT 59.540 41.667 0.00 0.00 33.39 3.41
41 42 5.646793 ACTGCTTGTAGACGAACTATGAGTA 59.353 40.000 0.00 0.00 33.39 2.59
42 43 5.877031 TGCTTGTAGACGAACTATGAGTAC 58.123 41.667 0.00 0.00 33.39 2.73
43 44 4.962751 GCTTGTAGACGAACTATGAGTACG 59.037 45.833 0.00 0.00 33.39 3.67
44 45 5.475273 TTGTAGACGAACTATGAGTACGG 57.525 43.478 0.00 0.00 33.39 4.02
45 46 4.507710 TGTAGACGAACTATGAGTACGGT 58.492 43.478 0.00 0.00 33.39 4.83
46 47 4.937620 TGTAGACGAACTATGAGTACGGTT 59.062 41.667 0.00 0.00 33.39 4.44
47 48 4.352600 AGACGAACTATGAGTACGGTTG 57.647 45.455 0.00 0.00 0.00 3.77
48 49 2.850647 GACGAACTATGAGTACGGTTGC 59.149 50.000 0.00 0.00 0.00 4.17
49 50 2.490903 ACGAACTATGAGTACGGTTGCT 59.509 45.455 0.00 0.00 0.00 3.91
50 51 3.106672 CGAACTATGAGTACGGTTGCTC 58.893 50.000 5.73 5.73 35.13 4.26
55 56 2.654749 TGAGTACGGTTGCTCATGAG 57.345 50.000 18.84 18.84 39.34 2.90
56 57 1.893137 TGAGTACGGTTGCTCATGAGT 59.107 47.619 23.38 6.43 39.34 3.41
57 58 2.299013 TGAGTACGGTTGCTCATGAGTT 59.701 45.455 23.38 4.77 39.34 3.01
58 59 3.508402 TGAGTACGGTTGCTCATGAGTTA 59.492 43.478 23.38 10.77 39.34 2.24
59 60 4.106197 GAGTACGGTTGCTCATGAGTTAG 58.894 47.826 23.38 12.91 34.71 2.34
60 61 1.726853 ACGGTTGCTCATGAGTTAGC 58.273 50.000 23.38 18.26 39.25 3.09
61 62 1.001974 ACGGTTGCTCATGAGTTAGCA 59.998 47.619 23.38 13.52 46.59 3.49
68 69 5.050644 TGCTCATGAGTTAGCACAAATTG 57.949 39.130 23.38 0.00 43.56 2.32
69 70 4.082625 TGCTCATGAGTTAGCACAAATTGG 60.083 41.667 23.38 0.00 43.56 3.16
70 71 4.082571 GCTCATGAGTTAGCACAAATTGGT 60.083 41.667 23.38 0.00 38.63 3.67
71 72 5.565439 GCTCATGAGTTAGCACAAATTGGTT 60.565 40.000 23.38 0.00 38.63 3.67
72 73 5.771469 TCATGAGTTAGCACAAATTGGTTG 58.229 37.500 0.00 0.00 43.43 3.77
84 85 3.694043 AATTGGTTGTAATTGCCCACC 57.306 42.857 5.36 5.36 0.00 4.61
85 86 0.962489 TTGGTTGTAATTGCCCACCG 59.038 50.000 7.28 0.00 0.00 4.94
86 87 0.110678 TGGTTGTAATTGCCCACCGA 59.889 50.000 7.28 0.00 0.00 4.69
87 88 1.249407 GGTTGTAATTGCCCACCGAA 58.751 50.000 0.00 0.00 0.00 4.30
88 89 1.068125 GGTTGTAATTGCCCACCGAAC 60.068 52.381 0.00 0.00 0.00 3.95
89 90 1.609555 GTTGTAATTGCCCACCGAACA 59.390 47.619 0.00 0.00 0.00 3.18
90 91 2.208132 TGTAATTGCCCACCGAACAT 57.792 45.000 0.00 0.00 0.00 2.71
91 92 1.815613 TGTAATTGCCCACCGAACATG 59.184 47.619 0.00 0.00 0.00 3.21
92 93 1.816224 GTAATTGCCCACCGAACATGT 59.184 47.619 0.00 0.00 0.00 3.21
93 94 0.887933 AATTGCCCACCGAACATGTC 59.112 50.000 0.00 0.00 0.00 3.06
94 95 0.038166 ATTGCCCACCGAACATGTCT 59.962 50.000 0.00 0.00 0.00 3.41
95 96 0.888736 TTGCCCACCGAACATGTCTG 60.889 55.000 0.00 0.00 0.00 3.51
96 97 1.302511 GCCCACCGAACATGTCTGT 60.303 57.895 0.00 0.00 37.12 3.41
97 98 1.298859 GCCCACCGAACATGTCTGTC 61.299 60.000 0.00 0.00 33.36 3.51
98 99 1.014044 CCCACCGAACATGTCTGTCG 61.014 60.000 10.74 10.74 33.36 4.35
99 100 0.038618 CCACCGAACATGTCTGTCGA 60.039 55.000 17.73 0.00 33.36 4.20
100 101 1.340658 CACCGAACATGTCTGTCGAG 58.659 55.000 17.73 11.11 33.36 4.04
101 102 0.959553 ACCGAACATGTCTGTCGAGT 59.040 50.000 17.73 11.63 33.36 4.18
102 103 1.335964 ACCGAACATGTCTGTCGAGTG 60.336 52.381 17.73 5.96 33.36 3.51
103 104 1.340658 CGAACATGTCTGTCGAGTGG 58.659 55.000 12.05 0.00 33.36 4.00
104 105 1.714794 GAACATGTCTGTCGAGTGGG 58.285 55.000 0.00 0.00 33.36 4.61
105 106 1.272490 GAACATGTCTGTCGAGTGGGA 59.728 52.381 0.00 0.00 33.36 4.37
106 107 1.561643 ACATGTCTGTCGAGTGGGAT 58.438 50.000 0.00 0.00 0.00 3.85
107 108 2.735151 ACATGTCTGTCGAGTGGGATA 58.265 47.619 0.00 0.00 0.00 2.59
108 109 2.427453 ACATGTCTGTCGAGTGGGATAC 59.573 50.000 0.00 0.00 0.00 2.24
109 110 2.509166 TGTCTGTCGAGTGGGATACT 57.491 50.000 0.00 0.00 44.02 2.12
110 111 3.639672 TGTCTGTCGAGTGGGATACTA 57.360 47.619 0.00 0.00 40.53 1.82
111 112 4.166246 TGTCTGTCGAGTGGGATACTAT 57.834 45.455 0.00 0.00 40.53 2.12
112 113 4.533815 TGTCTGTCGAGTGGGATACTATT 58.466 43.478 0.00 0.00 40.53 1.73
113 114 4.338400 TGTCTGTCGAGTGGGATACTATTG 59.662 45.833 0.00 0.00 40.53 1.90
114 115 4.338682 GTCTGTCGAGTGGGATACTATTGT 59.661 45.833 0.00 0.00 40.53 2.71
115 116 5.530171 GTCTGTCGAGTGGGATACTATTGTA 59.470 44.000 0.00 0.00 40.53 2.41
116 117 5.530171 TCTGTCGAGTGGGATACTATTGTAC 59.470 44.000 0.00 0.00 40.53 2.90
117 118 4.581824 TGTCGAGTGGGATACTATTGTACC 59.418 45.833 0.00 0.00 40.53 3.34
118 119 3.817084 TCGAGTGGGATACTATTGTACCG 59.183 47.826 0.00 0.00 40.53 4.02
119 120 3.611057 CGAGTGGGATACTATTGTACCGC 60.611 52.174 0.00 0.00 40.53 5.68
120 121 2.631545 AGTGGGATACTATTGTACCGCC 59.368 50.000 4.61 0.93 38.04 6.13
121 122 1.972795 TGGGATACTATTGTACCGCCC 59.027 52.381 12.02 12.02 37.88 6.13
122 123 1.972795 GGGATACTATTGTACCGCCCA 59.027 52.381 13.29 0.00 37.59 5.36
123 124 2.369532 GGGATACTATTGTACCGCCCAA 59.630 50.000 13.29 0.00 37.59 4.12
124 125 3.181452 GGGATACTATTGTACCGCCCAAA 60.181 47.826 13.29 0.00 37.59 3.28
125 126 4.062991 GGATACTATTGTACCGCCCAAAG 58.937 47.826 0.00 0.00 0.00 2.77
126 127 4.443881 GGATACTATTGTACCGCCCAAAGT 60.444 45.833 0.00 0.00 0.00 2.66
127 128 2.706890 ACTATTGTACCGCCCAAAGTG 58.293 47.619 0.00 0.00 0.00 3.16
137 138 1.286880 CCCAAAGTGGCTTCTTGCG 59.713 57.895 0.00 0.00 44.05 4.85
138 139 1.455383 CCCAAAGTGGCTTCTTGCGT 61.455 55.000 0.00 0.00 44.05 5.24
139 140 0.318107 CCAAAGTGGCTTCTTGCGTG 60.318 55.000 0.00 0.00 44.05 5.34
140 141 0.381801 CAAAGTGGCTTCTTGCGTGT 59.618 50.000 0.00 0.00 44.05 4.49
141 142 0.663153 AAAGTGGCTTCTTGCGTGTC 59.337 50.000 0.00 0.00 44.05 3.67
142 143 1.498865 AAGTGGCTTCTTGCGTGTCG 61.499 55.000 0.00 0.00 44.05 4.35
143 144 2.664851 TGGCTTCTTGCGTGTCGG 60.665 61.111 0.00 0.00 44.05 4.79
144 145 3.423154 GGCTTCTTGCGTGTCGGG 61.423 66.667 0.00 0.00 44.05 5.14
145 146 4.090057 GCTTCTTGCGTGTCGGGC 62.090 66.667 0.00 0.00 0.00 6.13
146 147 2.664851 CTTCTTGCGTGTCGGGCA 60.665 61.111 0.00 0.00 38.93 5.36
147 148 2.031919 TTCTTGCGTGTCGGGCAT 59.968 55.556 0.00 0.00 40.62 4.40
148 149 0.739462 CTTCTTGCGTGTCGGGCATA 60.739 55.000 0.00 0.00 40.62 3.14
149 150 0.107897 TTCTTGCGTGTCGGGCATAT 60.108 50.000 0.00 0.00 40.62 1.78
150 151 0.809636 TCTTGCGTGTCGGGCATATG 60.810 55.000 0.00 0.00 40.62 1.78
151 152 0.809636 CTTGCGTGTCGGGCATATGA 60.810 55.000 6.97 0.00 40.62 2.15
152 153 1.087202 TTGCGTGTCGGGCATATGAC 61.087 55.000 6.97 2.47 40.62 3.06
153 154 2.244651 GCGTGTCGGGCATATGACC 61.245 63.158 18.62 18.62 40.84 4.02
161 162 1.148310 GGGCATATGACCGAACATCG 58.852 55.000 13.08 0.00 40.07 3.84
162 163 1.540363 GGGCATATGACCGAACATCGT 60.540 52.381 13.08 0.00 38.40 3.73
163 164 2.210116 GGCATATGACCGAACATCGTT 58.790 47.619 6.97 0.00 38.40 3.85
164 165 2.032894 GGCATATGACCGAACATCGTTG 60.033 50.000 6.97 0.00 38.40 4.10
165 166 2.863740 GCATATGACCGAACATCGTTGA 59.136 45.455 6.97 0.00 38.40 3.18
166 167 3.494626 GCATATGACCGAACATCGTTGAT 59.505 43.478 6.97 0.00 38.40 2.57
167 168 4.376413 GCATATGACCGAACATCGTTGATC 60.376 45.833 6.97 0.00 38.40 2.92
168 169 3.526931 ATGACCGAACATCGTTGATCT 57.473 42.857 0.00 0.00 38.40 2.75
169 170 4.649088 ATGACCGAACATCGTTGATCTA 57.351 40.909 0.00 0.00 38.40 1.98
170 171 4.649088 TGACCGAACATCGTTGATCTAT 57.351 40.909 0.00 0.00 38.40 1.98
171 172 5.761165 TGACCGAACATCGTTGATCTATA 57.239 39.130 0.00 0.00 38.40 1.31
172 173 6.139048 TGACCGAACATCGTTGATCTATAA 57.861 37.500 0.00 0.00 38.40 0.98
173 174 6.566141 TGACCGAACATCGTTGATCTATAAA 58.434 36.000 0.00 0.00 38.40 1.40
174 175 6.695713 TGACCGAACATCGTTGATCTATAAAG 59.304 38.462 0.00 0.00 38.40 1.85
175 176 5.462398 ACCGAACATCGTTGATCTATAAAGC 59.538 40.000 0.00 0.00 38.40 3.51
176 177 5.692204 CCGAACATCGTTGATCTATAAAGCT 59.308 40.000 0.00 0.00 38.40 3.74
177 178 6.201044 CCGAACATCGTTGATCTATAAAGCTT 59.799 38.462 0.00 0.00 38.40 3.74
178 179 7.254455 CCGAACATCGTTGATCTATAAAGCTTT 60.254 37.037 17.30 17.30 38.40 3.51
179 180 7.580523 CGAACATCGTTGATCTATAAAGCTTTG 59.419 37.037 22.02 5.30 34.72 2.77
180 181 6.719365 ACATCGTTGATCTATAAAGCTTTGC 58.281 36.000 22.02 4.80 0.00 3.68
181 182 6.540189 ACATCGTTGATCTATAAAGCTTTGCT 59.460 34.615 22.02 11.18 42.56 3.91
317 327 1.974957 TCACCATCGTTTTCTCCTCCA 59.025 47.619 0.00 0.00 0.00 3.86
328 338 5.278463 CGTTTTCTCCTCCATGATGTTTTGT 60.278 40.000 0.00 0.00 0.00 2.83
343 354 0.762082 TTTGTTGCCCCATCTGCCAA 60.762 50.000 0.00 0.00 0.00 4.52
352 363 1.300971 CCATCTGCCAACGTGGACTG 61.301 60.000 8.04 0.00 40.96 3.51
376 387 0.673437 TTTTTCTTGCTCCTTGCCGG 59.327 50.000 0.00 0.00 42.00 6.13
480 516 1.595109 CACAGCCAACGACTCTGCA 60.595 57.895 0.00 0.00 0.00 4.41
520 556 2.125106 GAGCGCCAAACCGGAGAT 60.125 61.111 9.46 0.00 36.49 2.75
522 558 2.435938 GCGCCAAACCGGAGATGA 60.436 61.111 9.46 0.00 36.49 2.92
523 559 2.464459 GCGCCAAACCGGAGATGAG 61.464 63.158 9.46 3.01 36.49 2.90
524 560 2.464459 CGCCAAACCGGAGATGAGC 61.464 63.158 9.46 8.58 36.49 4.26
525 561 2.115291 GCCAAACCGGAGATGAGCC 61.115 63.158 9.46 0.00 36.56 4.70
526 562 1.604378 CCAAACCGGAGATGAGCCT 59.396 57.895 9.46 0.00 36.56 4.58
527 563 0.745845 CCAAACCGGAGATGAGCCTG 60.746 60.000 9.46 0.00 36.56 4.85
528 564 0.745845 CAAACCGGAGATGAGCCTGG 60.746 60.000 9.46 0.00 0.00 4.45
529 565 2.543067 AAACCGGAGATGAGCCTGGC 62.543 60.000 9.46 11.65 0.00 4.85
530 566 3.473647 CCGGAGATGAGCCTGGCA 61.474 66.667 22.65 0.22 0.00 4.92
555 595 3.116531 GGGAACGGCTGTGTACGC 61.117 66.667 0.00 0.00 0.00 4.42
680 1306 2.285977 CAAACCCGGACCATAAGCTAC 58.714 52.381 0.73 0.00 0.00 3.58
758 1402 1.618888 CCCTTCTCTCTTCCACCGGTA 60.619 57.143 6.87 0.00 0.00 4.02
830 1474 1.759459 CTCCTCCTCATAACCCGCCC 61.759 65.000 0.00 0.00 0.00 6.13
858 1502 4.856607 CCGCCTCCTCTCGCGTTC 62.857 72.222 5.77 0.00 46.83 3.95
866 1511 3.701604 CTCTCGCGTTCCTTCCGGG 62.702 68.421 5.77 0.00 39.33 5.73
867 1512 4.065281 CTCGCGTTCCTTCCGGGT 62.065 66.667 5.77 0.00 39.07 5.28
870 1515 4.772687 GCGTTCCTTCCGGGTCCC 62.773 72.222 0.00 0.00 36.25 4.46
899 1545 1.373570 CAACCGAGCCTGATTTCTCC 58.626 55.000 0.00 0.00 0.00 3.71
900 1546 0.108138 AACCGAGCCTGATTTCTCCG 60.108 55.000 0.00 0.00 0.00 4.63
902 1548 0.108138 CCGAGCCTGATTTCTCCGTT 60.108 55.000 0.00 0.00 0.00 4.44
903 1549 1.002366 CGAGCCTGATTTCTCCGTTG 58.998 55.000 0.00 0.00 0.00 4.10
904 1550 1.673033 CGAGCCTGATTTCTCCGTTGT 60.673 52.381 0.00 0.00 0.00 3.32
905 1551 2.427506 GAGCCTGATTTCTCCGTTGTT 58.572 47.619 0.00 0.00 0.00 2.83
906 1552 2.154462 AGCCTGATTTCTCCGTTGTTG 58.846 47.619 0.00 0.00 0.00 3.33
907 1553 1.200020 GCCTGATTTCTCCGTTGTTGG 59.800 52.381 0.00 0.00 0.00 3.77
910 1556 2.139917 TGATTTCTCCGTTGTTGGTCG 58.860 47.619 0.00 0.00 0.00 4.79
912 1558 1.161563 TTTCTCCGTTGTTGGTCGGC 61.162 55.000 0.00 0.00 45.44 5.54
913 1559 2.999739 TTCTCCGTTGTTGGTCGGCC 63.000 60.000 0.00 0.00 45.44 6.13
914 1560 3.530910 CTCCGTTGTTGGTCGGCCT 62.531 63.158 7.97 0.00 45.44 5.19
917 1563 2.983592 GTTGTTGGTCGGCCTGGG 60.984 66.667 7.97 0.00 35.27 4.45
918 1564 4.278513 TTGTTGGTCGGCCTGGGG 62.279 66.667 7.97 0.00 35.27 4.96
949 1596 0.679960 CCGAGGTTGGGTGGGATTTC 60.680 60.000 0.00 0.00 0.00 2.17
952 1599 0.328258 AGGTTGGGTGGGATTTCTCG 59.672 55.000 0.00 0.00 0.00 4.04
954 1601 0.037734 GTTGGGTGGGATTTCTCGGT 59.962 55.000 0.00 0.00 0.00 4.69
959 1606 2.290450 GGGTGGGATTTCTCGGTTTGTA 60.290 50.000 0.00 0.00 0.00 2.41
962 1609 4.461431 GGTGGGATTTCTCGGTTTGTATTT 59.539 41.667 0.00 0.00 0.00 1.40
975 1622 2.822255 TATTTGAGCCGGCGGTGC 60.822 61.111 28.82 19.66 0.00 5.01
995 1649 2.247637 CGTTGATGTTTGATGCTGCTG 58.752 47.619 0.00 0.00 0.00 4.41
996 1650 1.990563 GTTGATGTTTGATGCTGCTGC 59.009 47.619 8.89 8.89 40.20 5.25
1153 1814 2.212812 TGTTGTCAGCATATGCCCAA 57.787 45.000 23.96 19.67 43.38 4.12
1223 1886 6.808829 TGCCATGGATCAATTATTTGACTTC 58.191 36.000 18.40 0.00 44.36 3.01
1226 1889 8.800332 GCCATGGATCAATTATTTGACTTCTAT 58.200 33.333 18.40 0.00 44.36 1.98
1237 1900 3.777465 TGACTTCTATCCTCCGTTTCG 57.223 47.619 0.00 0.00 0.00 3.46
1252 1915 3.058501 CCGTTTCGTGCCATTAACTCTTT 60.059 43.478 0.00 0.00 0.00 2.52
1300 1963 4.010349 GCACAAAGCCTACAAGAAGGTAT 58.990 43.478 0.00 0.00 39.02 2.73
1345 2008 3.657350 GCCCTGGCCACCCTTGTA 61.657 66.667 0.00 0.00 34.56 2.41
1427 2090 6.183360 GCAGACCAACATGATAGAGAAAGAAC 60.183 42.308 0.00 0.00 0.00 3.01
1435 2098 3.513912 TGATAGAGAAAGAACGGGAGCAA 59.486 43.478 0.00 0.00 0.00 3.91
1454 2117 4.278513 CTTGCCACCACCCCGGAA 62.279 66.667 0.73 0.00 38.63 4.30
1476 2139 1.007238 TCCAGAGACCGAGATCCCTTT 59.993 52.381 0.00 0.00 0.00 3.11
1477 2140 1.137872 CCAGAGACCGAGATCCCTTTG 59.862 57.143 0.00 0.00 0.00 2.77
1518 2181 8.685311 ACCCAATACTTATAGTAGGTATGGAGA 58.315 37.037 0.00 0.00 33.66 3.71
1548 2211 3.947910 ACACTTGGGCATCTGATTTTG 57.052 42.857 0.00 0.00 0.00 2.44
1573 2238 5.697633 CGTTTTAAGGCTGGTGAGTAACTTA 59.302 40.000 0.00 0.00 0.00 2.24
1574 2239 6.370718 CGTTTTAAGGCTGGTGAGTAACTTAT 59.629 38.462 0.00 0.00 0.00 1.73
1886 2560 8.911918 TCTTTTGCCATTAGTTTACTGTTAGA 57.088 30.769 0.00 0.00 0.00 2.10
1945 2619 8.871686 AAGACTTGCTCGTCAAATTAAATTTT 57.128 26.923 0.00 0.00 36.38 1.82
1955 2629 8.949953 TCGTCAAATTAAATTTTGAAGAACGTC 58.050 29.630 14.04 0.00 45.00 4.34
1978 2652 8.736742 CGTCATTTTGTTGCTGAATTATATGTC 58.263 33.333 0.00 0.00 0.00 3.06
2005 2696 4.910458 AATAGCTGTGTGACCCTTAACT 57.090 40.909 0.00 0.00 0.00 2.24
2032 2723 3.432890 GGAGATCACCCTGAAGAATGGTC 60.433 52.174 0.00 0.00 0.00 4.02
2038 2729 1.406069 CCCTGAAGAATGGTCGGTCAG 60.406 57.143 0.00 0.00 39.06 3.51
2040 2731 0.389817 TGAAGAATGGTCGGTCAGCG 60.390 55.000 0.00 0.00 0.00 5.18
2058 2749 1.285023 GTTTGGAGCACTGCAGCAG 59.715 57.895 21.54 21.54 37.52 4.24
2063 2754 0.107993 GGAGCACTGCAGCAGTATCA 60.108 55.000 27.80 0.00 43.43 2.15
2064 2755 1.474677 GGAGCACTGCAGCAGTATCAT 60.475 52.381 27.80 13.52 43.43 2.45
2117 2850 5.430886 TGTAATCATAGTTGATGCACTGCT 58.569 37.500 1.98 0.00 41.83 4.24
2122 2855 4.101430 TCATAGTTGATGCACTGCTCCATA 59.899 41.667 1.98 0.00 35.29 2.74
2136 2869 3.577848 TGCTCCATAACCATTGCAAACTT 59.422 39.130 1.71 0.00 0.00 2.66
2140 2873 6.024552 TCCATAACCATTGCAAACTTTCTC 57.975 37.500 1.71 0.00 0.00 2.87
2142 2875 6.267471 TCCATAACCATTGCAAACTTTCTCTT 59.733 34.615 1.71 0.00 0.00 2.85
2143 2876 6.930722 CCATAACCATTGCAAACTTTCTCTTT 59.069 34.615 1.71 0.00 0.00 2.52
2144 2877 8.087750 CCATAACCATTGCAAACTTTCTCTTTA 58.912 33.333 1.71 0.00 0.00 1.85
2145 2878 9.474920 CATAACCATTGCAAACTTTCTCTTTAA 57.525 29.630 1.71 0.00 0.00 1.52
2184 2917 2.158696 AGAAGTCAGCTTGCCAGAAAGT 60.159 45.455 0.00 0.00 34.61 2.66
2192 2925 2.289547 GCTTGCCAGAAAGTGTTAACGA 59.710 45.455 0.26 0.00 0.00 3.85
2195 2928 5.600908 TTGCCAGAAAGTGTTAACGATAC 57.399 39.130 0.26 0.00 0.00 2.24
2229 2962 5.010933 TGGAAATAACCTGCGAAAATACCA 58.989 37.500 0.00 0.00 0.00 3.25
2234 2970 4.976224 AACCTGCGAAAATACCATAACC 57.024 40.909 0.00 0.00 0.00 2.85
2238 2974 4.319477 CCTGCGAAAATACCATAACCATCG 60.319 45.833 0.00 0.00 0.00 3.84
2295 3035 4.458989 TCTTCTCGCCATTGCAATACTTTT 59.541 37.500 12.53 0.00 37.32 2.27
2371 3111 7.255139 GCTACCTATTAAATGTGTCCATTCCAC 60.255 40.741 0.00 0.00 40.42 4.02
2375 3115 8.310382 CCTATTAAATGTGTCCATTCCACAAAA 58.690 33.333 0.00 0.00 45.20 2.44
2380 3120 1.266178 GTCCATTCCACAAAAGGGGG 58.734 55.000 0.00 0.00 31.04 5.40
2382 3122 1.552799 CCATTCCACAAAAGGGGGCC 61.553 60.000 0.00 0.00 0.00 5.80
2384 3124 2.763988 ATTCCACAAAAGGGGGCCCC 62.764 60.000 35.78 35.78 45.90 5.80
2417 3157 3.150458 ACCAAAAACTGTAGGGTAGGC 57.850 47.619 0.00 0.00 0.00 3.93
2473 3221 9.033481 TGTACACAAAATGTATACCTTATACGC 57.967 33.333 0.00 0.00 45.59 4.42
2487 3235 4.512944 CCTTATACGCTGAAGATGCACAAT 59.487 41.667 0.00 0.00 0.00 2.71
2489 3237 6.369890 CCTTATACGCTGAAGATGCACAATAT 59.630 38.462 0.00 0.00 0.00 1.28
2494 3242 3.190118 GCTGAAGATGCACAATATAGCCC 59.810 47.826 0.00 0.00 0.00 5.19
2507 3255 6.148480 CACAATATAGCCCTCACATAAGAAGC 59.852 42.308 0.00 0.00 0.00 3.86
2509 3257 2.706339 AGCCCTCACATAAGAAGCTG 57.294 50.000 0.00 0.00 0.00 4.24
2531 3279 3.340814 ACACTAGAGGCAAGAACATGG 57.659 47.619 0.00 0.00 0.00 3.66
2533 3281 3.005554 CACTAGAGGCAAGAACATGGTG 58.994 50.000 0.00 0.00 0.00 4.17
2535 3283 1.901591 AGAGGCAAGAACATGGTGTG 58.098 50.000 0.00 0.00 0.00 3.82
2537 3285 1.267806 GAGGCAAGAACATGGTGTGTG 59.732 52.381 0.00 0.00 41.14 3.82
2538 3286 0.314935 GGCAAGAACATGGTGTGTGG 59.685 55.000 0.00 0.00 41.14 4.17
2539 3287 0.314935 GCAAGAACATGGTGTGTGGG 59.685 55.000 0.00 0.00 41.14 4.61
2540 3288 1.691196 CAAGAACATGGTGTGTGGGT 58.309 50.000 0.00 0.00 41.14 4.51
2541 3289 1.337703 CAAGAACATGGTGTGTGGGTG 59.662 52.381 0.00 0.00 41.14 4.61
2542 3290 0.178992 AGAACATGGTGTGTGGGTGG 60.179 55.000 0.00 0.00 41.14 4.61
2543 3291 1.152567 AACATGGTGTGTGGGTGGG 60.153 57.895 0.00 0.00 41.14 4.61
2544 3292 1.943730 AACATGGTGTGTGGGTGGGT 61.944 55.000 0.00 0.00 41.14 4.51
2545 3293 1.603455 CATGGTGTGTGGGTGGGTC 60.603 63.158 0.00 0.00 0.00 4.46
2546 3294 3.190738 ATGGTGTGTGGGTGGGTCG 62.191 63.158 0.00 0.00 0.00 4.79
2547 3295 4.636435 GGTGTGTGGGTGGGTCGG 62.636 72.222 0.00 0.00 0.00 4.79
2548 3296 4.636435 GTGTGTGGGTGGGTCGGG 62.636 72.222 0.00 0.00 0.00 5.14
2587 3335 7.808279 CCCCTGGGTATATATTCTCACTTAA 57.192 40.000 12.71 0.00 0.00 1.85
2588 3336 8.214721 CCCCTGGGTATATATTCTCACTTAAA 57.785 38.462 12.71 0.00 0.00 1.52
2589 3337 8.101419 CCCCTGGGTATATATTCTCACTTAAAC 58.899 40.741 12.71 0.00 0.00 2.01
2590 3338 8.656806 CCCTGGGTATATATTCTCACTTAAACA 58.343 37.037 3.97 0.00 0.00 2.83
2628 3376 7.992754 ATCTCAATGCTCTCTTTGTACTTTT 57.007 32.000 0.00 0.00 0.00 2.27
2638 3386 7.553881 TCTCTTTGTACTTTTGTCTTTGAGG 57.446 36.000 0.00 0.00 0.00 3.86
2640 3388 7.495934 TCTCTTTGTACTTTTGTCTTTGAGGAG 59.504 37.037 0.00 0.00 0.00 3.69
2651 3399 9.442047 TTTTGTCTTTGAGGAGATCTAAGATTC 57.558 33.333 7.89 0.00 46.65 2.52
2682 3431 8.485976 AAATCGTTTTTCCTTTGATTTGTTCA 57.514 26.923 0.00 0.00 37.73 3.18
2683 3432 6.879188 TCGTTTTTCCTTTGATTTGTTCAC 57.121 33.333 0.00 0.00 32.84 3.18
2687 3436 7.062839 CGTTTTTCCTTTGATTTGTTCACAAGA 59.937 33.333 0.00 0.00 37.15 3.02
2689 3438 9.447157 TTTTTCCTTTGATTTGTTCACAAGAAT 57.553 25.926 0.00 0.00 37.15 2.40
2738 3670 4.641541 TGTGGTGCATCTCTTCCAATAATG 59.358 41.667 0.00 0.00 0.00 1.90
2744 3676 6.261826 GTGCATCTCTTCCAATAATGTTAGCT 59.738 38.462 0.00 0.00 0.00 3.32
2751 3683 3.201930 TCCAATAATGTTAGCTGGCCTGA 59.798 43.478 14.77 0.00 0.00 3.86
2771 3703 7.415206 GGCCTGATTTACTTGTTTTGATACGAT 60.415 37.037 0.00 0.00 0.00 3.73
2892 3824 2.402305 CTTCTGCAGCGATATGTCTCC 58.598 52.381 9.47 0.00 0.00 3.71
2904 3836 5.617751 GCGATATGTCTCCATATTGGCAAAC 60.618 44.000 3.01 0.00 42.92 2.93
3063 4176 8.193953 ACTTTTGGTATCACAAATCAAGGATT 57.806 30.769 0.00 0.00 39.80 3.01
3096 4210 4.491676 TCTTAGCGCACCTTTAACTACTG 58.508 43.478 11.47 0.00 0.00 2.74
3322 4436 0.671472 TCAGCAATCGCACTGTGAGG 60.671 55.000 12.86 2.32 42.27 3.86
3325 4439 2.045926 AATCGCACTGTGAGGCCC 60.046 61.111 12.86 0.00 0.00 5.80
3541 4655 7.553881 AATACTTTGAATGGGACTCAATACG 57.446 36.000 0.00 0.00 32.98 3.06
3555 4669 5.164954 ACTCAATACGAGAGCTTCTTGAAC 58.835 41.667 7.24 0.00 45.45 3.18
3558 4672 0.667792 ACGAGAGCTTCTTGAACGGC 60.668 55.000 7.24 0.00 32.20 5.68
3571 4685 1.079127 AACGGCCGAAGATGACCAG 60.079 57.895 35.90 0.00 0.00 4.00
3616 4730 7.479980 TGTTGTAGTGAGTTTCATTCTTTTGG 58.520 34.615 0.00 0.00 0.00 3.28
3628 4742 1.616159 TCTTTTGGCCCCTTCTTTCG 58.384 50.000 0.00 0.00 0.00 3.46
3677 4791 2.071778 AGTTGGCACTTGTGTCCATT 57.928 45.000 14.26 6.76 0.00 3.16
3828 4943 2.826488 AGCTTGTAGTCTCCAGGACAT 58.174 47.619 0.00 0.00 46.72 3.06
3878 5019 8.739972 AGTTATGATCATCTTACACCAAAAACC 58.260 33.333 12.53 0.00 0.00 3.27
3879 5020 8.739972 GTTATGATCATCTTACACCAAAAACCT 58.260 33.333 12.53 0.00 0.00 3.50
3880 5021 6.817765 TGATCATCTTACACCAAAAACCTC 57.182 37.500 0.00 0.00 0.00 3.85
3882 5023 7.004086 TGATCATCTTACACCAAAAACCTCTT 58.996 34.615 0.00 0.00 0.00 2.85
3895 5036 6.597280 CCAAAAACCTCTTCCTTAGATCAGAG 59.403 42.308 0.00 0.00 33.77 3.35
3929 5070 9.874205 ATGGTTGATGATTACATTTTGTTTAGG 57.126 29.630 0.00 0.00 36.82 2.69
3930 5071 9.083422 TGGTTGATGATTACATTTTGTTTAGGA 57.917 29.630 0.00 0.00 36.82 2.94
3931 5072 9.353999 GGTTGATGATTACATTTTGTTTAGGAC 57.646 33.333 0.00 0.00 36.82 3.85
3975 5116 8.590204 TGACAATGTTTAGGTATCACTTCACTA 58.410 33.333 0.00 0.00 0.00 2.74
4013 5154 7.124347 TCATTTTGTTTAGGTATCACGTCAC 57.876 36.000 0.00 0.00 0.00 3.67
4014 5155 6.932400 TCATTTTGTTTAGGTATCACGTCACT 59.068 34.615 0.00 0.00 0.00 3.41
4015 5156 8.089597 TCATTTTGTTTAGGTATCACGTCACTA 58.910 33.333 0.00 0.00 0.00 2.74
4016 5157 8.879759 CATTTTGTTTAGGTATCACGTCACTAT 58.120 33.333 0.00 0.00 0.00 2.12
4017 5158 8.836268 TTTTGTTTAGGTATCACGTCACTATT 57.164 30.769 0.00 0.00 0.00 1.73
4018 5159 8.470040 TTTGTTTAGGTATCACGTCACTATTC 57.530 34.615 0.00 0.00 0.00 1.75
4019 5160 7.160547 TGTTTAGGTATCACGTCACTATTCA 57.839 36.000 0.00 0.00 0.00 2.57
4020 5161 7.778083 TGTTTAGGTATCACGTCACTATTCAT 58.222 34.615 0.00 0.00 0.00 2.57
4021 5162 8.255206 TGTTTAGGTATCACGTCACTATTCATT 58.745 33.333 0.00 0.00 0.00 2.57
4022 5163 9.740239 GTTTAGGTATCACGTCACTATTCATTA 57.260 33.333 0.00 0.00 0.00 1.90
4026 5167 9.261180 AGGTATCACGTCACTATTCATTATTTG 57.739 33.333 0.00 0.00 0.00 2.32
4027 5168 9.256477 GGTATCACGTCACTATTCATTATTTGA 57.744 33.333 0.00 0.00 0.00 2.69
4029 5170 8.948631 ATCACGTCACTATTCATTATTTGACT 57.051 30.769 0.00 0.00 32.84 3.41
4030 5171 8.407457 TCACGTCACTATTCATTATTTGACTC 57.593 34.615 0.00 0.00 32.84 3.36
4031 5172 8.032451 TCACGTCACTATTCATTATTTGACTCA 58.968 33.333 0.00 0.00 32.84 3.41
4032 5173 8.110612 CACGTCACTATTCATTATTTGACTCAC 58.889 37.037 0.00 0.00 32.84 3.51
4033 5174 7.817478 ACGTCACTATTCATTATTTGACTCACA 59.183 33.333 0.00 0.00 32.84 3.58
4034 5175 8.655970 CGTCACTATTCATTATTTGACTCACAA 58.344 33.333 0.00 0.00 32.84 3.33
4043 5184 3.631145 TTTGACTCACAAAGCTCATGC 57.369 42.857 0.00 0.00 42.57 4.06
4044 5185 1.150827 TGACTCACAAAGCTCATGCG 58.849 50.000 0.00 0.00 45.42 4.73
4045 5186 0.179205 GACTCACAAAGCTCATGCGC 60.179 55.000 0.00 0.00 45.42 6.09
4046 5187 0.604780 ACTCACAAAGCTCATGCGCT 60.605 50.000 9.73 3.86 45.42 5.92
4047 5188 0.179197 CTCACAAAGCTCATGCGCTG 60.179 55.000 11.65 3.02 45.42 5.18
4048 5189 0.886043 TCACAAAGCTCATGCGCTGT 60.886 50.000 11.65 1.90 45.42 4.40
4049 5190 0.798159 CACAAAGCTCATGCGCTGTA 59.202 50.000 11.65 0.00 45.42 2.74
4050 5191 1.081892 ACAAAGCTCATGCGCTGTAG 58.918 50.000 11.65 6.83 45.42 2.74
4051 5192 1.338105 ACAAAGCTCATGCGCTGTAGA 60.338 47.619 11.65 0.00 45.42 2.59
4092 5233 6.833416 TGATAAATGGGGAAACATAGTCCAAG 59.167 38.462 0.00 0.00 36.83 3.61
4098 5246 4.226620 GGGGAAACATAGTCCAAGAACCTA 59.773 45.833 0.00 0.00 36.83 3.08
4173 5321 8.519799 TTTCAGGACATAAGATGGGAAAATAC 57.480 34.615 0.00 0.00 33.60 1.89
4176 5324 6.263168 CAGGACATAAGATGGGAAAATACACC 59.737 42.308 0.00 0.00 33.60 4.16
4177 5325 5.238650 GGACATAAGATGGGAAAATACACCG 59.761 44.000 0.00 0.00 33.60 4.94
4231 5381 5.845985 TTCGAAGTTATTTGAGTGCTCAG 57.154 39.130 0.00 0.00 41.13 3.35
4235 5385 6.926826 TCGAAGTTATTTGAGTGCTCAGTTTA 59.073 34.615 1.98 0.00 41.13 2.01
4260 5410 7.334090 AGTGTCAGAACTTGATATACTGCAAT 58.666 34.615 0.00 0.00 38.29 3.56
4310 5460 4.505556 GCTGATGCCTAATTTTGCTTTAGC 59.494 41.667 12.30 12.30 37.19 3.09
4324 5474 5.261209 TGCTTTAGCTGTGATTTGTTTGT 57.739 34.783 0.00 0.00 42.66 2.83
4328 5478 6.421801 GCTTTAGCTGTGATTTGTTTGTGAAT 59.578 34.615 0.00 0.00 38.21 2.57
4335 5485 8.268738 GCTGTGATTTGTTTGTGAATTTAGAAC 58.731 33.333 0.00 0.00 0.00 3.01
4401 5554 7.508977 ACTTTGTTCCCTAATTTCATTCCAGAA 59.491 33.333 0.00 0.00 0.00 3.02
4402 5555 7.847711 TTGTTCCCTAATTTCATTCCAGAAA 57.152 32.000 0.00 0.00 41.31 2.52
4432 5585 4.101114 GGAAAATAATTGGGTTCCCACCT 58.899 43.478 10.41 3.32 43.65 4.00
4455 5608 4.275810 AGCTGAAACAATATGCTGATGGT 58.724 39.130 0.00 0.00 32.32 3.55
4456 5609 4.708421 AGCTGAAACAATATGCTGATGGTT 59.292 37.500 0.00 0.00 32.32 3.67
4485 5638 6.570672 AAAAACCCTCGTCTCTTTTATTCC 57.429 37.500 0.00 0.00 0.00 3.01
4565 5728 9.066892 GGAATATTAATGATGTGAGGTGCTTTA 57.933 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.127479 ACAAGCAGTTACACTCCATTTGAAAA 60.127 34.615 0.00 0.00 0.00 2.29
1 2 5.359576 ACAAGCAGTTACACTCCATTTGAAA 59.640 36.000 0.00 0.00 0.00 2.69
2 3 4.887071 ACAAGCAGTTACACTCCATTTGAA 59.113 37.500 0.00 0.00 0.00 2.69
3 4 4.460263 ACAAGCAGTTACACTCCATTTGA 58.540 39.130 0.00 0.00 0.00 2.69
4 5 4.836125 ACAAGCAGTTACACTCCATTTG 57.164 40.909 0.00 0.00 0.00 2.32
5 6 5.701290 GTCTACAAGCAGTTACACTCCATTT 59.299 40.000 0.00 0.00 0.00 2.32
7 8 4.618460 CGTCTACAAGCAGTTACACTCCAT 60.618 45.833 0.00 0.00 0.00 3.41
8 9 3.305131 CGTCTACAAGCAGTTACACTCCA 60.305 47.826 0.00 0.00 0.00 3.86
9 10 3.057736 TCGTCTACAAGCAGTTACACTCC 60.058 47.826 0.00 0.00 0.00 3.85
10 11 4.156664 TCGTCTACAAGCAGTTACACTC 57.843 45.455 0.00 0.00 0.00 3.51
11 12 4.037684 AGTTCGTCTACAAGCAGTTACACT 59.962 41.667 0.00 0.00 0.00 3.55
12 13 4.296690 AGTTCGTCTACAAGCAGTTACAC 58.703 43.478 0.00 0.00 0.00 2.90
13 14 4.579454 AGTTCGTCTACAAGCAGTTACA 57.421 40.909 0.00 0.00 0.00 2.41
14 15 6.320171 TCATAGTTCGTCTACAAGCAGTTAC 58.680 40.000 0.00 0.00 0.00 2.50
15 16 6.150641 ACTCATAGTTCGTCTACAAGCAGTTA 59.849 38.462 0.00 0.00 0.00 2.24
16 17 5.047943 ACTCATAGTTCGTCTACAAGCAGTT 60.048 40.000 0.00 0.00 0.00 3.16
17 18 4.459685 ACTCATAGTTCGTCTACAAGCAGT 59.540 41.667 0.00 0.00 0.00 4.40
18 19 4.987832 ACTCATAGTTCGTCTACAAGCAG 58.012 43.478 0.00 0.00 0.00 4.24
19 20 5.446875 CGTACTCATAGTTCGTCTACAAGCA 60.447 44.000 0.00 0.00 34.87 3.91
20 21 4.962751 CGTACTCATAGTTCGTCTACAAGC 59.037 45.833 0.00 0.00 34.87 4.01
21 22 5.064452 ACCGTACTCATAGTTCGTCTACAAG 59.936 44.000 5.56 0.00 37.31 3.16
22 23 4.937620 ACCGTACTCATAGTTCGTCTACAA 59.062 41.667 5.56 0.00 37.31 2.41
23 24 4.507710 ACCGTACTCATAGTTCGTCTACA 58.492 43.478 5.56 0.00 37.31 2.74
24 25 5.261661 CAACCGTACTCATAGTTCGTCTAC 58.738 45.833 5.56 0.00 37.31 2.59
25 26 4.201851 GCAACCGTACTCATAGTTCGTCTA 60.202 45.833 5.56 0.00 37.31 2.59
26 27 3.427233 GCAACCGTACTCATAGTTCGTCT 60.427 47.826 5.56 0.00 37.31 4.18
27 28 2.850647 GCAACCGTACTCATAGTTCGTC 59.149 50.000 5.56 0.00 37.31 4.20
28 29 2.490903 AGCAACCGTACTCATAGTTCGT 59.509 45.455 5.56 0.00 37.31 3.85
29 30 3.106672 GAGCAACCGTACTCATAGTTCG 58.893 50.000 0.00 0.00 38.48 3.95
30 31 4.106029 TGAGCAACCGTACTCATAGTTC 57.894 45.455 1.02 0.00 37.99 3.01
36 37 1.893137 ACTCATGAGCAACCGTACTCA 59.107 47.619 22.83 6.63 46.34 3.41
37 38 2.656560 ACTCATGAGCAACCGTACTC 57.343 50.000 22.83 0.00 0.00 2.59
38 39 3.676324 GCTAACTCATGAGCAACCGTACT 60.676 47.826 22.83 0.00 38.62 2.73
39 40 2.603560 GCTAACTCATGAGCAACCGTAC 59.396 50.000 22.83 0.90 38.62 3.67
40 41 2.232696 TGCTAACTCATGAGCAACCGTA 59.767 45.455 22.83 3.97 45.47 4.02
41 42 1.001974 TGCTAACTCATGAGCAACCGT 59.998 47.619 22.83 0.00 45.47 4.83
42 43 1.725641 TGCTAACTCATGAGCAACCG 58.274 50.000 22.83 8.00 45.47 4.44
46 47 4.082625 CCAATTTGTGCTAACTCATGAGCA 60.083 41.667 22.83 12.85 46.24 4.26
47 48 4.082571 ACCAATTTGTGCTAACTCATGAGC 60.083 41.667 22.83 10.16 39.25 4.26
48 49 5.633830 ACCAATTTGTGCTAACTCATGAG 57.366 39.130 21.37 21.37 0.00 2.90
49 50 5.771469 CAACCAATTTGTGCTAACTCATGA 58.229 37.500 0.00 0.00 0.00 3.07
62 63 3.750652 GGTGGGCAATTACAACCAATTTG 59.249 43.478 1.86 0.00 41.49 2.32
63 64 3.556004 CGGTGGGCAATTACAACCAATTT 60.556 43.478 6.67 0.00 34.26 1.82
64 65 2.028567 CGGTGGGCAATTACAACCAATT 60.029 45.455 6.67 0.00 34.26 2.32
65 66 1.548269 CGGTGGGCAATTACAACCAAT 59.452 47.619 6.67 0.00 34.26 3.16
66 67 0.962489 CGGTGGGCAATTACAACCAA 59.038 50.000 6.67 0.00 34.26 3.67
67 68 0.110678 TCGGTGGGCAATTACAACCA 59.889 50.000 6.67 0.00 0.00 3.67
68 69 1.068125 GTTCGGTGGGCAATTACAACC 60.068 52.381 0.00 0.00 0.00 3.77
69 70 1.609555 TGTTCGGTGGGCAATTACAAC 59.390 47.619 0.00 0.00 0.00 3.32
70 71 1.982660 TGTTCGGTGGGCAATTACAA 58.017 45.000 0.00 0.00 0.00 2.41
71 72 1.815613 CATGTTCGGTGGGCAATTACA 59.184 47.619 0.00 0.00 0.00 2.41
72 73 1.816224 ACATGTTCGGTGGGCAATTAC 59.184 47.619 0.00 0.00 0.00 1.89
73 74 2.088423 GACATGTTCGGTGGGCAATTA 58.912 47.619 0.00 0.00 0.00 1.40
74 75 0.887933 GACATGTTCGGTGGGCAATT 59.112 50.000 0.00 0.00 0.00 2.32
75 76 0.038166 AGACATGTTCGGTGGGCAAT 59.962 50.000 0.00 0.00 0.00 3.56
76 77 0.888736 CAGACATGTTCGGTGGGCAA 60.889 55.000 0.00 0.00 0.00 4.52
77 78 1.302431 CAGACATGTTCGGTGGGCA 60.302 57.895 0.00 0.00 0.00 5.36
78 79 1.298859 GACAGACATGTTCGGTGGGC 61.299 60.000 0.00 0.00 40.68 5.36
79 80 1.014044 CGACAGACATGTTCGGTGGG 61.014 60.000 9.99 0.00 40.68 4.61
80 81 0.038618 TCGACAGACATGTTCGGTGG 60.039 55.000 16.18 10.11 40.68 4.61
81 82 1.335964 ACTCGACAGACATGTTCGGTG 60.336 52.381 16.18 12.30 40.68 4.94
82 83 0.959553 ACTCGACAGACATGTTCGGT 59.040 50.000 16.18 11.03 40.68 4.69
83 84 1.340658 CACTCGACAGACATGTTCGG 58.659 55.000 16.18 10.52 40.68 4.30
84 85 1.340658 CCACTCGACAGACATGTTCG 58.659 55.000 11.34 11.34 40.68 3.95
85 86 1.272490 TCCCACTCGACAGACATGTTC 59.728 52.381 0.00 0.00 40.68 3.18
86 87 1.338107 TCCCACTCGACAGACATGTT 58.662 50.000 0.00 0.00 40.68 2.71
87 88 1.561643 ATCCCACTCGACAGACATGT 58.438 50.000 0.00 0.00 44.31 3.21
88 89 2.690497 AGTATCCCACTCGACAGACATG 59.310 50.000 0.00 0.00 28.33 3.21
89 90 3.019799 AGTATCCCACTCGACAGACAT 57.980 47.619 0.00 0.00 28.33 3.06
90 91 2.509166 AGTATCCCACTCGACAGACA 57.491 50.000 0.00 0.00 28.33 3.41
91 92 4.338682 ACAATAGTATCCCACTCGACAGAC 59.661 45.833 0.00 0.00 38.80 3.51
92 93 4.533815 ACAATAGTATCCCACTCGACAGA 58.466 43.478 0.00 0.00 38.80 3.41
93 94 4.920640 ACAATAGTATCCCACTCGACAG 57.079 45.455 0.00 0.00 38.80 3.51
94 95 4.581824 GGTACAATAGTATCCCACTCGACA 59.418 45.833 0.00 0.00 38.80 4.35
95 96 4.320057 CGGTACAATAGTATCCCACTCGAC 60.320 50.000 0.00 0.00 38.80 4.20
96 97 3.817084 CGGTACAATAGTATCCCACTCGA 59.183 47.826 0.00 0.00 38.80 4.04
97 98 3.611057 GCGGTACAATAGTATCCCACTCG 60.611 52.174 0.00 0.00 38.80 4.18
98 99 3.305881 GGCGGTACAATAGTATCCCACTC 60.306 52.174 0.00 0.00 38.80 3.51
99 100 2.631545 GGCGGTACAATAGTATCCCACT 59.368 50.000 0.00 0.00 41.62 4.00
100 101 2.289257 GGGCGGTACAATAGTATCCCAC 60.289 54.545 0.00 0.00 37.22 4.61
101 102 1.972795 GGGCGGTACAATAGTATCCCA 59.027 52.381 0.00 0.00 37.22 4.37
102 103 1.972795 TGGGCGGTACAATAGTATCCC 59.027 52.381 0.00 0.00 37.50 3.85
103 104 3.756933 TTGGGCGGTACAATAGTATCC 57.243 47.619 0.00 0.00 31.84 2.59
104 105 4.510340 CACTTTGGGCGGTACAATAGTATC 59.490 45.833 0.00 0.00 31.84 2.24
105 106 4.448210 CACTTTGGGCGGTACAATAGTAT 58.552 43.478 0.00 0.00 31.84 2.12
106 107 3.369681 CCACTTTGGGCGGTACAATAGTA 60.370 47.826 0.00 0.00 32.67 1.82
107 108 2.617021 CCACTTTGGGCGGTACAATAGT 60.617 50.000 0.00 0.00 32.67 2.12
108 109 2.014128 CCACTTTGGGCGGTACAATAG 58.986 52.381 0.00 0.00 32.67 1.73
109 110 1.951424 GCCACTTTGGGCGGTACAATA 60.951 52.381 0.00 0.00 45.40 1.90
110 111 1.248101 GCCACTTTGGGCGGTACAAT 61.248 55.000 0.00 0.00 45.40 2.71
111 112 1.899534 GCCACTTTGGGCGGTACAA 60.900 57.895 0.00 0.00 45.40 2.41
112 113 2.281900 GCCACTTTGGGCGGTACA 60.282 61.111 0.00 0.00 45.40 2.90
119 120 1.286880 CGCAAGAAGCCACTTTGGG 59.713 57.895 0.00 0.00 41.38 4.12
120 121 0.318107 CACGCAAGAAGCCACTTTGG 60.318 55.000 0.00 0.00 41.38 3.28
121 122 0.381801 ACACGCAAGAAGCCACTTTG 59.618 50.000 0.00 0.00 41.38 2.77
122 123 0.663153 GACACGCAAGAAGCCACTTT 59.337 50.000 0.00 0.00 41.38 2.66
123 124 1.498865 CGACACGCAAGAAGCCACTT 61.499 55.000 0.00 0.00 41.38 3.16
124 125 1.956170 CGACACGCAAGAAGCCACT 60.956 57.895 0.00 0.00 41.38 4.00
125 126 2.551270 CGACACGCAAGAAGCCAC 59.449 61.111 0.00 0.00 41.38 5.01
126 127 2.664851 CCGACACGCAAGAAGCCA 60.665 61.111 0.00 0.00 41.38 4.75
127 128 3.423154 CCCGACACGCAAGAAGCC 61.423 66.667 0.00 0.00 41.38 4.35
128 129 4.090057 GCCCGACACGCAAGAAGC 62.090 66.667 0.00 0.00 43.62 3.86
129 130 0.739462 TATGCCCGACACGCAAGAAG 60.739 55.000 0.00 0.00 40.22 2.85
130 131 0.107897 ATATGCCCGACACGCAAGAA 60.108 50.000 0.00 0.00 40.22 2.52
131 132 0.809636 CATATGCCCGACACGCAAGA 60.810 55.000 0.00 0.00 40.22 3.02
132 133 0.809636 TCATATGCCCGACACGCAAG 60.810 55.000 0.00 0.00 40.22 4.01
133 134 1.087202 GTCATATGCCCGACACGCAA 61.087 55.000 0.00 0.00 40.22 4.85
134 135 1.520564 GTCATATGCCCGACACGCA 60.521 57.895 0.00 0.00 41.28 5.24
135 136 2.244651 GGTCATATGCCCGACACGC 61.245 63.158 0.00 0.00 33.66 5.34
136 137 4.027755 GGTCATATGCCCGACACG 57.972 61.111 0.00 0.00 33.66 4.49
141 142 1.148310 GATGTTCGGTCATATGCCCG 58.852 55.000 18.91 18.91 45.55 6.13
142 143 1.148310 CGATGTTCGGTCATATGCCC 58.852 55.000 0.00 0.00 36.00 5.36
143 144 1.865865 ACGATGTTCGGTCATATGCC 58.134 50.000 0.00 1.98 45.59 4.40
144 145 2.863740 TCAACGATGTTCGGTCATATGC 59.136 45.455 0.00 0.00 37.97 3.14
145 146 4.984785 AGATCAACGATGTTCGGTCATATG 59.015 41.667 0.00 0.00 37.97 1.78
146 147 5.201713 AGATCAACGATGTTCGGTCATAT 57.798 39.130 0.00 0.00 37.97 1.78
147 148 4.649088 AGATCAACGATGTTCGGTCATA 57.351 40.909 0.00 0.00 37.97 2.15
148 149 3.526931 AGATCAACGATGTTCGGTCAT 57.473 42.857 0.00 0.00 37.97 3.06
149 150 4.649088 ATAGATCAACGATGTTCGGTCA 57.351 40.909 0.00 0.00 37.97 4.02
150 151 6.345882 GCTTTATAGATCAACGATGTTCGGTC 60.346 42.308 0.00 0.00 37.97 4.79
151 152 5.462398 GCTTTATAGATCAACGATGTTCGGT 59.538 40.000 0.00 0.00 42.68 4.69
152 153 5.692204 AGCTTTATAGATCAACGATGTTCGG 59.308 40.000 0.00 0.00 45.59 4.30
153 154 6.755461 AGCTTTATAGATCAACGATGTTCG 57.245 37.500 0.00 0.00 46.93 3.95
154 155 7.374491 GCAAAGCTTTATAGATCAACGATGTTC 59.626 37.037 12.25 0.00 0.00 3.18
155 156 7.066284 AGCAAAGCTTTATAGATCAACGATGTT 59.934 33.333 12.25 0.00 33.89 2.71
156 157 6.540189 AGCAAAGCTTTATAGATCAACGATGT 59.460 34.615 12.25 0.00 33.89 3.06
157 158 6.952743 AGCAAAGCTTTATAGATCAACGATG 58.047 36.000 12.25 0.00 33.89 3.84
239 242 6.654582 ACACCAAAGAGCATTTTCAAACTTTT 59.345 30.769 0.00 0.00 0.00 2.27
243 246 5.351458 AGACACCAAAGAGCATTTTCAAAC 58.649 37.500 0.00 0.00 0.00 2.93
244 247 5.596836 AGACACCAAAGAGCATTTTCAAA 57.403 34.783 0.00 0.00 0.00 2.69
245 248 5.596836 AAGACACCAAAGAGCATTTTCAA 57.403 34.783 0.00 0.00 0.00 2.69
247 250 9.860898 AATATAAAGACACCAAAGAGCATTTTC 57.139 29.630 0.00 0.00 0.00 2.29
248 251 9.643693 CAATATAAAGACACCAAAGAGCATTTT 57.356 29.630 0.00 0.00 0.00 1.82
286 293 9.244799 GAGAAAACGATGGTGATTTTAACTTTT 57.755 29.630 0.00 0.00 0.00 2.27
290 297 6.909909 AGGAGAAAACGATGGTGATTTTAAC 58.090 36.000 0.00 0.00 0.00 2.01
317 327 3.055675 CAGATGGGGCAACAAAACATCAT 60.056 43.478 0.00 0.00 40.17 2.45
376 387 4.357947 TCTCGCCGACACAGCCAC 62.358 66.667 0.00 0.00 0.00 5.01
467 503 2.358737 GGGGTGCAGAGTCGTTGG 60.359 66.667 0.00 0.00 0.00 3.77
513 549 3.473647 TGCCAGGCTCATCTCCGG 61.474 66.667 14.15 0.00 0.00 5.14
573 613 1.639298 GAAAGGAATCAGCTGCGCGT 61.639 55.000 9.47 0.00 0.00 6.01
574 614 1.061570 GAAAGGAATCAGCTGCGCG 59.938 57.895 9.47 0.00 0.00 6.86
575 615 1.028868 AGGAAAGGAATCAGCTGCGC 61.029 55.000 9.47 0.00 0.00 6.09
576 616 1.399791 GAAGGAAAGGAATCAGCTGCG 59.600 52.381 9.47 0.00 0.00 5.18
578 618 2.373224 GGGAAGGAAAGGAATCAGCTG 58.627 52.381 7.63 7.63 0.00 4.24
579 619 1.286257 GGGGAAGGAAAGGAATCAGCT 59.714 52.381 0.00 0.00 0.00 4.24
580 620 1.769026 GGGGAAGGAAAGGAATCAGC 58.231 55.000 0.00 0.00 0.00 4.26
581 621 1.559682 TCGGGGAAGGAAAGGAATCAG 59.440 52.381 0.00 0.00 0.00 2.90
582 622 1.559682 CTCGGGGAAGGAAAGGAATCA 59.440 52.381 0.00 0.00 0.00 2.57
583 623 1.134068 CCTCGGGGAAGGAAAGGAATC 60.134 57.143 0.00 0.00 38.87 2.52
584 624 0.919710 CCTCGGGGAAGGAAAGGAAT 59.080 55.000 0.00 0.00 38.87 3.01
585 625 2.383608 CCTCGGGGAAGGAAAGGAA 58.616 57.895 0.00 0.00 38.87 3.36
586 626 4.147135 CCTCGGGGAAGGAAAGGA 57.853 61.111 0.00 0.00 38.87 3.36
680 1306 2.081462 GGGGTTATGTTCGTTCTGGTG 58.919 52.381 0.00 0.00 0.00 4.17
882 1528 1.258445 ACGGAGAAATCAGGCTCGGT 61.258 55.000 0.00 0.00 39.09 4.69
885 1531 2.100605 ACAACGGAGAAATCAGGCTC 57.899 50.000 0.00 0.00 0.00 4.70
890 1536 2.139917 CGACCAACAACGGAGAAATCA 58.860 47.619 0.00 0.00 0.00 2.57
899 1545 3.353836 CCAGGCCGACCAACAACG 61.354 66.667 0.00 0.00 39.06 4.10
900 1546 2.983592 CCCAGGCCGACCAACAAC 60.984 66.667 0.00 0.00 39.06 3.32
903 1549 4.410400 CTCCCCAGGCCGACCAAC 62.410 72.222 0.00 0.00 39.06 3.77
907 1553 4.779733 TCTCCTCCCCAGGCCGAC 62.780 72.222 0.00 0.00 40.12 4.79
910 1556 2.766229 GAGTCTCCTCCCCAGGCC 60.766 72.222 0.00 0.00 40.12 5.19
918 1564 3.213402 CCTCGGCGGAGTCTCCTC 61.213 72.222 17.00 8.89 38.70 3.71
919 1565 3.587170 AACCTCGGCGGAGTCTCCT 62.587 63.158 17.00 0.00 38.70 3.69
923 1570 4.452733 CCCAACCTCGGCGGAGTC 62.453 72.222 18.79 0.00 38.70 3.36
932 1579 1.679032 CGAGAAATCCCACCCAACCTC 60.679 57.143 0.00 0.00 0.00 3.85
935 1582 0.037734 ACCGAGAAATCCCACCCAAC 59.962 55.000 0.00 0.00 0.00 3.77
949 1596 1.396996 CCGGCTCAAATACAAACCGAG 59.603 52.381 0.00 0.00 43.19 4.63
952 1599 0.179174 CGCCGGCTCAAATACAAACC 60.179 55.000 26.68 0.00 0.00 3.27
954 1601 0.606944 ACCGCCGGCTCAAATACAAA 60.607 50.000 26.68 0.00 0.00 2.83
975 1622 2.247637 CAGCAGCATCAAACATCAACG 58.752 47.619 0.00 0.00 0.00 4.10
976 1623 1.990563 GCAGCAGCATCAAACATCAAC 59.009 47.619 0.00 0.00 41.58 3.18
977 1624 1.067425 GGCAGCAGCATCAAACATCAA 60.067 47.619 2.65 0.00 44.61 2.57
979 1626 0.179119 GGGCAGCAGCATCAAACATC 60.179 55.000 2.65 0.00 44.61 3.06
995 1649 3.242291 CTACCCCCTCCATCGGGC 61.242 72.222 0.00 0.00 43.86 6.13
996 1650 2.526873 CCTACCCCCTCCATCGGG 60.527 72.222 0.00 0.00 45.70 5.14
1128 1789 4.580167 GGGCATATGCTGACAACAATCTAA 59.420 41.667 26.12 0.00 41.70 2.10
1153 1814 4.256920 GTGTACATGAGCTGATTCCAGTT 58.743 43.478 0.00 0.00 42.35 3.16
1223 1886 0.174845 TGGCACGAAACGGAGGATAG 59.825 55.000 0.00 0.00 0.00 2.08
1226 1889 0.609151 TAATGGCACGAAACGGAGGA 59.391 50.000 0.00 0.00 0.00 3.71
1237 1900 5.229423 TGCATTTGAAAGAGTTAATGGCAC 58.771 37.500 0.00 0.00 0.00 5.01
1252 1915 2.754552 GCTGGTTGTATCCTGCATTTGA 59.245 45.455 9.14 0.00 46.73 2.69
1294 1957 1.735376 ATGACGCGAGCGGATACCTT 61.735 55.000 21.69 0.00 44.69 3.50
1390 2053 2.347490 GTCTGCCTGAGCCCGAAA 59.653 61.111 0.00 0.00 38.69 3.46
1454 2117 1.219213 AGGGATCTCGGTCTCTGGAAT 59.781 52.381 0.00 0.00 0.00 3.01
1477 2140 2.597510 GGTGTGGGGAAGTGCACC 60.598 66.667 14.63 0.00 43.52 5.01
1518 2181 6.956435 TCAGATGCCCAAGTGTATCTATCTAT 59.044 38.462 0.00 0.00 35.80 1.98
1548 2211 1.235724 ACTCACCAGCCTTAAAACGC 58.764 50.000 0.00 0.00 0.00 4.84
1573 2238 8.966868 TCCTAACAAAGAAACAAACAGAAGAAT 58.033 29.630 0.00 0.00 0.00 2.40
1574 2239 8.343168 TCCTAACAAAGAAACAAACAGAAGAA 57.657 30.769 0.00 0.00 0.00 2.52
1911 2585 9.817809 ATTTGACGAGCAAGTCTTATCTATTTA 57.182 29.630 11.86 0.00 41.47 1.40
1915 2589 9.647797 TTTAATTTGACGAGCAAGTCTTATCTA 57.352 29.630 11.86 0.00 41.47 1.98
1916 2590 8.547967 TTTAATTTGACGAGCAAGTCTTATCT 57.452 30.769 11.86 0.00 41.47 1.98
1917 2591 9.774742 AATTTAATTTGACGAGCAAGTCTTATC 57.225 29.630 11.86 0.00 41.47 1.75
1925 2599 8.864069 TCTTCAAAATTTAATTTGACGAGCAA 57.136 26.923 3.51 0.00 46.06 3.91
1945 2619 4.095632 TCAGCAACAAAATGACGTTCTTCA 59.904 37.500 0.00 0.00 0.00 3.02
1955 2629 9.027129 CAGGACATATAATTCAGCAACAAAATG 57.973 33.333 0.00 0.00 0.00 2.32
1963 2637 9.219603 GCTATTTACAGGACATATAATTCAGCA 57.780 33.333 0.00 0.00 0.00 4.41
1978 2652 3.055094 AGGGTCACACAGCTATTTACAGG 60.055 47.826 0.00 0.00 0.00 4.00
1992 2666 2.107552 CTCCCCAAAGTTAAGGGTCACA 59.892 50.000 11.31 0.00 43.89 3.58
2010 2701 2.507471 ACCATTCTTCAGGGTGATCTCC 59.493 50.000 5.18 5.18 32.60 3.71
2011 2702 3.739519 CGACCATTCTTCAGGGTGATCTC 60.740 52.174 0.00 0.00 34.39 2.75
2013 2704 2.555199 CGACCATTCTTCAGGGTGATC 58.445 52.381 0.00 0.00 34.39 2.92
2016 2707 0.324943 ACCGACCATTCTTCAGGGTG 59.675 55.000 0.00 0.00 34.39 4.61
2020 2711 1.363744 GCTGACCGACCATTCTTCAG 58.636 55.000 0.00 0.00 34.66 3.02
2032 2723 2.664851 TGCTCCAAACGCTGACCG 60.665 61.111 0.00 0.00 44.21 4.79
2038 2729 2.253452 CTGCAGTGCTCCAAACGC 59.747 61.111 17.60 0.00 0.00 4.84
2040 2731 1.285023 CTGCTGCAGTGCTCCAAAC 59.715 57.895 21.21 0.00 0.00 2.93
2090 2823 7.467675 GCAGTGCATCAACTATGATTACATTCA 60.468 37.037 11.09 0.00 43.89 2.57
2093 2826 6.060136 AGCAGTGCATCAACTATGATTACAT 58.940 36.000 19.20 0.00 43.89 2.29
2094 2827 5.430886 AGCAGTGCATCAACTATGATTACA 58.569 37.500 19.20 0.00 43.89 2.41
2095 2828 5.049818 GGAGCAGTGCATCAACTATGATTAC 60.050 44.000 19.20 0.00 43.89 1.89
2096 2829 5.059161 GGAGCAGTGCATCAACTATGATTA 58.941 41.667 19.20 0.00 43.89 1.75
2097 2830 3.881688 GGAGCAGTGCATCAACTATGATT 59.118 43.478 19.20 0.00 43.89 2.57
2099 2832 2.236893 TGGAGCAGTGCATCAACTATGA 59.763 45.455 19.20 0.00 37.86 2.15
2100 2833 2.635714 TGGAGCAGTGCATCAACTATG 58.364 47.619 19.20 0.00 38.74 2.23
2101 2834 3.572632 ATGGAGCAGTGCATCAACTAT 57.427 42.857 19.20 3.89 25.56 2.12
2117 2850 5.774690 AGAGAAAGTTTGCAATGGTTATGGA 59.225 36.000 0.00 0.00 0.00 3.41
2122 2855 8.664798 GTTTTAAAGAGAAAGTTTGCAATGGTT 58.335 29.630 0.00 0.00 0.00 3.67
2229 2962 6.121776 TGCCCTTATCATTACGATGGTTAT 57.878 37.500 0.00 0.00 35.39 1.89
2234 2970 2.744202 GGCTGCCCTTATCATTACGATG 59.256 50.000 7.66 0.00 35.39 3.84
2238 2974 3.555966 ACTTGGCTGCCCTTATCATTAC 58.444 45.455 17.53 0.00 0.00 1.89
2295 3035 8.317679 CAAACATACAAGATTAAAAATGGGGGA 58.682 33.333 0.00 0.00 0.00 4.81
2345 3085 6.770785 TGGAATGGACACATTTAATAGGTAGC 59.229 38.462 0.00 0.00 46.89 3.58
2363 3103 1.552799 GGCCCCCTTTTGTGGAATGG 61.553 60.000 0.00 0.00 33.43 3.16
2371 3111 0.621280 ATGAATGGGGCCCCCTTTTG 60.621 55.000 38.81 0.00 45.70 2.44
2375 3115 0.120991 AAAAATGAATGGGGCCCCCT 59.879 50.000 38.81 27.33 45.70 4.79
2411 3151 8.935614 AGAAAAATTATATACAAGGGCCTACC 57.064 34.615 6.41 0.00 40.67 3.18
2448 3188 9.252962 AGCGTATAAGGTATACATTTTGTGTAC 57.747 33.333 8.23 6.13 45.59 2.90
2451 3191 8.360325 TCAGCGTATAAGGTATACATTTTGTG 57.640 34.615 8.23 0.00 40.78 3.33
2462 3202 4.098807 TGTGCATCTTCAGCGTATAAGGTA 59.901 41.667 0.00 0.00 33.85 3.08
2463 3203 3.118775 TGTGCATCTTCAGCGTATAAGGT 60.119 43.478 0.00 0.00 33.85 3.50
2465 3205 5.663795 ATTGTGCATCTTCAGCGTATAAG 57.336 39.130 0.00 0.00 33.85 1.73
2471 3219 3.120408 GGCTATATTGTGCATCTTCAGCG 60.120 47.826 0.00 0.00 33.85 5.18
2473 3221 4.649692 AGGGCTATATTGTGCATCTTCAG 58.350 43.478 0.00 0.00 0.00 3.02
2487 3235 4.901849 ACAGCTTCTTATGTGAGGGCTATA 59.098 41.667 0.00 0.00 0.00 1.31
2489 3237 3.107601 ACAGCTTCTTATGTGAGGGCTA 58.892 45.455 0.00 0.00 0.00 3.93
2494 3242 7.089770 TCTAGTGTACAGCTTCTTATGTGAG 57.910 40.000 0.00 0.00 0.00 3.51
2507 3255 4.521130 TGTTCTTGCCTCTAGTGTACAG 57.479 45.455 0.00 0.00 0.00 2.74
2509 3257 4.184629 CCATGTTCTTGCCTCTAGTGTAC 58.815 47.826 0.00 0.00 0.00 2.90
2531 3279 4.636435 CCCGACCCACCCACACAC 62.636 72.222 0.00 0.00 0.00 3.82
2563 3311 7.808279 TTAAGTGAGAATATATACCCAGGGG 57.192 40.000 11.37 6.87 42.03 4.79
2564 3312 8.656806 TGTTTAAGTGAGAATATATACCCAGGG 58.343 37.037 2.85 2.85 0.00 4.45
2565 3313 9.712305 CTGTTTAAGTGAGAATATATACCCAGG 57.288 37.037 0.00 0.00 0.00 4.45
2628 3376 6.378564 ACGAATCTTAGATCTCCTCAAAGACA 59.621 38.462 0.00 0.00 0.00 3.41
2638 3386 8.563289 ACGATTTACAACGAATCTTAGATCTC 57.437 34.615 0.00 0.00 32.60 2.75
2640 3388 9.968743 AAAACGATTTACAACGAATCTTAGATC 57.031 29.630 0.00 0.00 32.60 2.75
2651 3399 7.617533 ATCAAAGGAAAAACGATTTACAACG 57.382 32.000 0.00 0.00 0.00 4.10
2738 3670 4.010349 ACAAGTAAATCAGGCCAGCTAAC 58.990 43.478 5.01 0.00 0.00 2.34
2744 3676 6.348950 CGTATCAAAACAAGTAAATCAGGCCA 60.349 38.462 5.01 0.00 0.00 5.36
2771 3703 5.659079 AGACCCTGTAATTCCACAAAACAAA 59.341 36.000 0.00 0.00 0.00 2.83
2904 3836 8.916654 AGTTGCTTCGTATTTCTATCATAATCG 58.083 33.333 0.00 0.00 0.00 3.34
2933 3865 2.880890 ACATGAGCTTTGTGAGTTCCAC 59.119 45.455 0.00 0.00 45.88 4.02
3063 4176 1.335145 GCGCTAAGATGTAGGGGGTA 58.665 55.000 0.00 0.00 0.00 3.69
3096 4210 7.169982 GCACATCCACAATAGTACAGAAGATAC 59.830 40.741 0.00 0.00 0.00 2.24
3151 4265 1.207570 AGAACATCAGCCTGCAGAGAG 59.792 52.381 17.39 3.96 0.00 3.20
3322 4436 3.490348 ACATGAATATAGTGCAAGGGGC 58.510 45.455 0.00 0.00 45.13 5.80
3325 4439 5.593909 TCCCAAACATGAATATAGTGCAAGG 59.406 40.000 0.00 0.00 0.00 3.61
3541 4655 1.355066 CGGCCGTTCAAGAAGCTCTC 61.355 60.000 19.50 0.00 0.00 3.20
3555 4669 0.179073 AATCTGGTCATCTTCGGCCG 60.179 55.000 22.12 22.12 0.00 6.13
3558 4672 3.742433 AGCTAATCTGGTCATCTTCGG 57.258 47.619 0.00 0.00 0.00 4.30
3616 4730 4.048470 AGGGGCGAAAGAAGGGGC 62.048 66.667 0.00 0.00 0.00 5.80
3628 4742 2.033294 GCTAGCTATGGCAGGGGC 59.967 66.667 7.70 0.00 41.70 5.80
3677 4791 3.201930 TGAGCCCTTTGGATTAGCACATA 59.798 43.478 0.00 0.00 0.00 2.29
3797 4912 5.215252 AGACTACAAGCTTAAACTGAGCA 57.785 39.130 0.00 0.00 42.56 4.26
3798 4913 4.627900 GGAGACTACAAGCTTAAACTGAGC 59.372 45.833 0.00 0.00 40.43 4.26
3800 4915 5.279506 CCTGGAGACTACAAGCTTAAACTGA 60.280 44.000 0.00 0.00 0.00 3.41
3828 4943 2.988010 ATGCTCTACTTTGCGATCCA 57.012 45.000 0.00 0.00 0.00 3.41
3903 5044 9.874205 CCTAAACAAAATGTAATCATCAACCAT 57.126 29.630 0.00 0.00 32.56 3.55
3942 5083 9.811995 GTGATACCTAAACATTGTCATACAGTA 57.188 33.333 0.00 0.00 0.00 2.74
3943 5084 8.540388 AGTGATACCTAAACATTGTCATACAGT 58.460 33.333 0.00 0.00 0.00 3.55
3944 5085 8.948631 AGTGATACCTAAACATTGTCATACAG 57.051 34.615 0.00 0.00 0.00 2.74
3945 5086 9.378551 GAAGTGATACCTAAACATTGTCATACA 57.621 33.333 0.00 0.00 0.00 2.29
3946 5087 9.378551 TGAAGTGATACCTAAACATTGTCATAC 57.621 33.333 0.00 0.00 0.00 2.39
3947 5088 9.378551 GTGAAGTGATACCTAAACATTGTCATA 57.621 33.333 0.00 0.00 0.00 2.15
3948 5089 8.103305 AGTGAAGTGATACCTAAACATTGTCAT 58.897 33.333 0.00 0.00 0.00 3.06
3949 5090 7.450074 AGTGAAGTGATACCTAAACATTGTCA 58.550 34.615 0.00 0.00 0.00 3.58
3950 5091 7.907214 AGTGAAGTGATACCTAAACATTGTC 57.093 36.000 0.00 0.00 0.00 3.18
3951 5092 9.959721 AATAGTGAAGTGATACCTAAACATTGT 57.040 29.630 0.00 0.00 0.00 2.71
3987 5128 8.234546 GTGACGTGATACCTAAACAAAATGATT 58.765 33.333 0.00 0.00 0.00 2.57
3988 5129 7.606456 AGTGACGTGATACCTAAACAAAATGAT 59.394 33.333 0.00 0.00 0.00 2.45
3990 5131 7.129109 AGTGACGTGATACCTAAACAAAATG 57.871 36.000 0.00 0.00 0.00 2.32
3991 5132 9.444600 AATAGTGACGTGATACCTAAACAAAAT 57.555 29.630 0.00 0.00 0.00 1.82
3992 5133 8.836268 AATAGTGACGTGATACCTAAACAAAA 57.164 30.769 0.00 0.00 0.00 2.44
3993 5134 8.089597 TGAATAGTGACGTGATACCTAAACAAA 58.910 33.333 0.00 0.00 0.00 2.83
3994 5135 7.604549 TGAATAGTGACGTGATACCTAAACAA 58.395 34.615 0.00 0.00 0.00 2.83
3995 5136 7.160547 TGAATAGTGACGTGATACCTAAACA 57.839 36.000 0.00 0.00 0.00 2.83
3996 5137 8.644318 AATGAATAGTGACGTGATACCTAAAC 57.356 34.615 0.00 0.00 0.00 2.01
4000 5141 9.261180 CAAATAATGAATAGTGACGTGATACCT 57.739 33.333 0.00 0.00 0.00 3.08
4001 5142 9.256477 TCAAATAATGAATAGTGACGTGATACC 57.744 33.333 0.00 0.00 34.30 2.73
4006 5147 8.110612 GTGAGTCAAATAATGAATAGTGACGTG 58.889 37.037 0.00 0.00 40.50 4.49
4007 5148 7.817478 TGTGAGTCAAATAATGAATAGTGACGT 59.183 33.333 0.00 0.00 40.50 4.34
4011 5152 9.282247 GCTTTGTGAGTCAAATAATGAATAGTG 57.718 33.333 0.00 0.00 43.78 2.74
4013 5154 9.713740 GAGCTTTGTGAGTCAAATAATGAATAG 57.286 33.333 0.00 0.00 43.78 1.73
4014 5155 9.230122 TGAGCTTTGTGAGTCAAATAATGAATA 57.770 29.630 0.00 0.00 43.78 1.75
4015 5156 8.114331 TGAGCTTTGTGAGTCAAATAATGAAT 57.886 30.769 0.00 0.00 43.78 2.57
4016 5157 7.509141 TGAGCTTTGTGAGTCAAATAATGAA 57.491 32.000 0.00 0.00 43.78 2.57
4017 5158 7.532571 CATGAGCTTTGTGAGTCAAATAATGA 58.467 34.615 0.00 0.00 43.78 2.57
4018 5159 6.252869 GCATGAGCTTTGTGAGTCAAATAATG 59.747 38.462 0.00 0.00 43.78 1.90
4019 5160 6.327934 GCATGAGCTTTGTGAGTCAAATAAT 58.672 36.000 0.00 0.00 43.78 1.28
4020 5161 5.617529 CGCATGAGCTTTGTGAGTCAAATAA 60.618 40.000 0.00 0.00 43.78 1.40
4021 5162 4.142838 CGCATGAGCTTTGTGAGTCAAATA 60.143 41.667 0.00 0.00 43.78 1.40
4022 5163 3.365666 CGCATGAGCTTTGTGAGTCAAAT 60.366 43.478 0.00 0.00 43.78 2.32
4023 5164 2.031769 CGCATGAGCTTTGTGAGTCAAA 60.032 45.455 0.00 0.00 42.72 2.69
4024 5165 1.532437 CGCATGAGCTTTGTGAGTCAA 59.468 47.619 0.00 0.00 39.10 3.18
4025 5166 1.150827 CGCATGAGCTTTGTGAGTCA 58.849 50.000 0.00 0.00 39.10 3.41
4026 5167 0.179205 GCGCATGAGCTTTGTGAGTC 60.179 55.000 14.75 0.00 39.10 3.36
4027 5168 0.604780 AGCGCATGAGCTTTGTGAGT 60.605 50.000 19.02 0.00 46.80 3.41
4028 5169 0.179197 CAGCGCATGAGCTTTGTGAG 60.179 55.000 22.17 5.49 46.80 3.51
4029 5170 0.886043 ACAGCGCATGAGCTTTGTGA 60.886 50.000 22.17 0.00 46.80 3.58
4030 5171 0.798159 TACAGCGCATGAGCTTTGTG 59.202 50.000 22.17 13.62 46.80 3.33
4031 5172 1.081892 CTACAGCGCATGAGCTTTGT 58.918 50.000 22.17 19.61 46.80 2.83
4032 5173 1.362768 TCTACAGCGCATGAGCTTTG 58.637 50.000 22.17 14.72 46.80 2.77
4033 5174 2.322355 ATCTACAGCGCATGAGCTTT 57.678 45.000 22.17 18.08 46.80 3.51
4034 5175 2.322355 AATCTACAGCGCATGAGCTT 57.678 45.000 22.17 14.88 46.80 3.74
4036 5177 1.935873 TCAAATCTACAGCGCATGAGC 59.064 47.619 14.17 14.17 37.42 4.26
4037 5178 2.034254 CGTCAAATCTACAGCGCATGAG 60.034 50.000 11.47 2.70 0.00 2.90
4038 5179 1.926510 CGTCAAATCTACAGCGCATGA 59.073 47.619 11.47 1.69 0.00 3.07
4039 5180 1.004610 CCGTCAAATCTACAGCGCATG 60.005 52.381 11.47 7.81 0.00 4.06
4040 5181 1.290203 CCGTCAAATCTACAGCGCAT 58.710 50.000 11.47 0.00 0.00 4.73
4041 5182 1.358725 GCCGTCAAATCTACAGCGCA 61.359 55.000 11.47 0.00 0.00 6.09
4042 5183 1.084370 AGCCGTCAAATCTACAGCGC 61.084 55.000 0.00 0.00 0.00 5.92
4043 5184 0.647410 CAGCCGTCAAATCTACAGCG 59.353 55.000 0.00 0.00 0.00 5.18
4044 5185 1.726853 ACAGCCGTCAAATCTACAGC 58.273 50.000 0.00 0.00 0.00 4.40
4045 5186 4.327357 CAGTTACAGCCGTCAAATCTACAG 59.673 45.833 0.00 0.00 0.00 2.74
4046 5187 4.021807 TCAGTTACAGCCGTCAAATCTACA 60.022 41.667 0.00 0.00 0.00 2.74
4047 5188 4.491676 TCAGTTACAGCCGTCAAATCTAC 58.508 43.478 0.00 0.00 0.00 2.59
4048 5189 4.794278 TCAGTTACAGCCGTCAAATCTA 57.206 40.909 0.00 0.00 0.00 1.98
4049 5190 3.678056 TCAGTTACAGCCGTCAAATCT 57.322 42.857 0.00 0.00 0.00 2.40
4050 5191 6.417191 TTTATCAGTTACAGCCGTCAAATC 57.583 37.500 0.00 0.00 0.00 2.17
4051 5192 6.183360 CCATTTATCAGTTACAGCCGTCAAAT 60.183 38.462 0.00 0.00 0.00 2.32
4126 5274 9.865152 TGAAATCATGAACATCTAATATCCCAA 57.135 29.630 0.00 0.00 0.00 4.12
4173 5321 6.677781 ATGTACTTGGAAATCATAACGGTG 57.322 37.500 0.00 0.00 0.00 4.94
4208 5358 5.934625 ACTGAGCACTCAAATAACTTCGAAT 59.065 36.000 0.00 0.00 39.39 3.34
4212 5362 8.012241 CACTAAACTGAGCACTCAAATAACTTC 58.988 37.037 1.42 0.00 39.39 3.01
4231 5381 8.596380 GCAGTATATCAAGTTCTGACACTAAAC 58.404 37.037 0.00 0.00 36.69 2.01
4235 5385 6.286240 TGCAGTATATCAAGTTCTGACACT 57.714 37.500 0.00 0.00 36.69 3.55
4260 5410 7.998383 ACCTATGCAATGTTGGATTAATAGTCA 59.002 33.333 5.08 0.00 39.95 3.41
4282 5432 3.381272 GCAAAATTAGGCATCAGCACCTA 59.619 43.478 0.00 0.00 44.61 3.08
4291 5441 5.185635 TCACAGCTAAAGCAAAATTAGGCAT 59.814 36.000 4.54 0.00 45.16 4.40
4310 5460 9.299963 TGTTCTAAATTCACAAACAAATCACAG 57.700 29.630 0.00 0.00 0.00 3.66
4372 5525 9.148879 TGGAATGAAATTAGGGAACAAAGTAAA 57.851 29.630 0.00 0.00 36.07 2.01
4397 5550 7.983484 CCCAATTATTTTCCTCAGGATTTTCTG 59.017 37.037 0.00 0.00 36.17 3.02
4401 5554 7.092891 GGAACCCAATTATTTTCCTCAGGATTT 60.093 37.037 0.00 0.00 35.56 2.17
4402 5555 6.384015 GGAACCCAATTATTTTCCTCAGGATT 59.616 38.462 0.00 0.00 35.56 3.01
4432 5585 5.439721 ACCATCAGCATATTGTTTCAGCTA 58.560 37.500 0.00 0.00 33.59 3.32
4514 5667 6.918067 TGTCTCAAACTCTCAATTCCTAGA 57.082 37.500 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.