Multiple sequence alignment - TraesCS3B01G352200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G352200 chr3B 100.000 2398 0 0 1 2398 561888208 561890605 0.000000e+00 4429
1 TraesCS3B01G352200 chr3B 81.707 1066 124 47 683 1704 561840494 561841532 0.000000e+00 822
2 TraesCS3B01G352200 chr3B 79.852 943 104 53 686 1584 561592299 561593199 5.670000e-171 610
3 TraesCS3B01G352200 chr3B 85.747 435 45 5 970 1403 561039113 561038695 6.080000e-121 444
4 TraesCS3B01G352200 chr3B 81.920 448 53 15 975 1403 561044758 561044320 1.050000e-93 353
5 TraesCS3B01G352200 chr3B 77.049 488 77 14 1840 2316 425729540 425730003 5.120000e-62 248
6 TraesCS3B01G352200 chr3B 79.023 348 52 16 1808 2148 820349687 820350020 4.010000e-53 219
7 TraesCS3B01G352200 chr3B 86.538 104 13 1 1604 1706 561596246 561596349 1.950000e-21 113
8 TraesCS3B01G352200 chr3A 87.939 1824 129 50 525 2324 556261319 556259563 0.000000e+00 2065
9 TraesCS3B01G352200 chr3A 82.791 1075 98 54 633 1656 556354331 556353293 0.000000e+00 880
10 TraesCS3B01G352200 chr3A 79.811 1060 121 61 686 1684 556340946 556339919 0.000000e+00 686
11 TraesCS3B01G352200 chr3A 82.299 435 52 13 970 1403 556683187 556683597 1.050000e-93 353
12 TraesCS3B01G352200 chr3A 80.000 455 65 19 970 1403 556678415 556678864 1.790000e-81 313
13 TraesCS3B01G352200 chr3D 90.306 949 39 22 525 1449 429647034 429647953 0.000000e+00 1194
14 TraesCS3B01G352200 chr3D 81.372 1079 117 54 620 1648 429636910 429637954 0.000000e+00 802
15 TraesCS3B01G352200 chr3D 90.133 375 19 4 1449 1805 429648038 429648412 2.790000e-129 472
16 TraesCS3B01G352200 chr3D 84.598 435 44 8 970 1403 428994403 428993991 6.170000e-111 411
17 TraesCS3B01G352200 chr3D 76.547 614 102 29 1796 2398 1650221 1649639 5.010000e-77 298
18 TraesCS3B01G352200 chr3D 77.969 522 77 19 1808 2320 44960773 44961265 2.330000e-75 292
19 TraesCS3B01G352200 chr3D 88.889 162 14 2 970 1128 429044261 429044101 1.880000e-46 196
20 TraesCS3B01G352200 chr3D 75.442 509 67 28 1814 2317 328552331 328552786 6.760000e-46 195
21 TraesCS3B01G352200 chr7B 80.114 528 74 15 1801 2320 104002115 104002619 4.870000e-97 364
22 TraesCS3B01G352200 chr5D 80.385 520 66 17 1810 2320 417389853 417390345 1.750000e-96 363
23 TraesCS3B01G352200 chr5D 78.161 609 99 30 1807 2398 20758727 20759318 8.150000e-95 357
24 TraesCS3B01G352200 chr6A 80.614 521 55 26 1807 2320 36689814 36689333 6.300000e-96 361
25 TraesCS3B01G352200 chr7D 77.362 561 89 25 1808 2354 26533855 26533319 5.010000e-77 298
26 TraesCS3B01G352200 chr7D 91.209 91 7 1 1851 1941 110885093 110885182 3.240000e-24 122
27 TraesCS3B01G352200 chr4D 78.004 491 69 21 1807 2285 84420583 84421046 3.040000e-69 272
28 TraesCS3B01G352200 chr4D 77.176 517 69 21 1808 2320 74153644 74153173 3.060000e-64 255
29 TraesCS3B01G352200 chr2D 76.673 523 82 25 1888 2398 572258433 572258927 1.100000e-63 254
30 TraesCS3B01G352200 chr2D 79.235 366 52 13 2024 2383 429922809 429922462 1.430000e-57 233
31 TraesCS3B01G352200 chrUn 75.292 599 86 35 1808 2393 35648585 35648036 1.850000e-56 230
32 TraesCS3B01G352200 chr1A 74.842 632 81 43 1807 2398 373323049 373323642 5.190000e-52 215
33 TraesCS3B01G352200 chr2B 83.550 231 27 6 2042 2264 52938828 52938601 3.120000e-49 206
34 TraesCS3B01G352200 chr6D 77.320 388 54 25 1812 2185 29367199 29367566 5.230000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G352200 chr3B 561888208 561890605 2397 False 4429.0 4429 100.0000 1 2398 1 chr3B.!!$F3 2397
1 TraesCS3B01G352200 chr3B 561840494 561841532 1038 False 822.0 822 81.7070 683 1704 1 chr3B.!!$F2 1021
2 TraesCS3B01G352200 chr3B 561592299 561596349 4050 False 361.5 610 83.1950 686 1706 2 chr3B.!!$F5 1020
3 TraesCS3B01G352200 chr3A 556259563 556261319 1756 True 2065.0 2065 87.9390 525 2324 1 chr3A.!!$R1 1799
4 TraesCS3B01G352200 chr3A 556353293 556354331 1038 True 880.0 880 82.7910 633 1656 1 chr3A.!!$R3 1023
5 TraesCS3B01G352200 chr3A 556339919 556340946 1027 True 686.0 686 79.8110 686 1684 1 chr3A.!!$R2 998
6 TraesCS3B01G352200 chr3D 429647034 429648412 1378 False 833.0 1194 90.2195 525 1805 2 chr3D.!!$F4 1280
7 TraesCS3B01G352200 chr3D 429636910 429637954 1044 False 802.0 802 81.3720 620 1648 1 chr3D.!!$F3 1028
8 TraesCS3B01G352200 chr3D 1649639 1650221 582 True 298.0 298 76.5470 1796 2398 1 chr3D.!!$R1 602
9 TraesCS3B01G352200 chr7B 104002115 104002619 504 False 364.0 364 80.1140 1801 2320 1 chr7B.!!$F1 519
10 TraesCS3B01G352200 chr5D 20758727 20759318 591 False 357.0 357 78.1610 1807 2398 1 chr5D.!!$F1 591
11 TraesCS3B01G352200 chr7D 26533319 26533855 536 True 298.0 298 77.3620 1808 2354 1 chr7D.!!$R1 546
12 TraesCS3B01G352200 chrUn 35648036 35648585 549 True 230.0 230 75.2920 1808 2393 1 chrUn.!!$R1 585
13 TraesCS3B01G352200 chr1A 373323049 373323642 593 False 215.0 215 74.8420 1807 2398 1 chr1A.!!$F1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.027194 CGGCGACTTCATCAGCAATG 59.973 55.0 0.0 0.0 36.65 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1418 1554 0.927083 CAAATAGCGATGCTGCGTGC 60.927 55.0 0.0 3.62 40.1 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.982130 CGGAGGTGAGGAGGTTGG 59.018 66.667 0.00 0.00 0.00 3.77
18 19 1.609501 CGGAGGTGAGGAGGTTGGA 60.610 63.158 0.00 0.00 0.00 3.53
19 20 1.608717 CGGAGGTGAGGAGGTTGGAG 61.609 65.000 0.00 0.00 0.00 3.86
20 21 1.599576 GAGGTGAGGAGGTTGGAGC 59.400 63.158 0.00 0.00 0.00 4.70
21 22 2.232298 GAGGTGAGGAGGTTGGAGCG 62.232 65.000 0.00 0.00 0.00 5.03
22 23 2.435059 GTGAGGAGGTTGGAGCGC 60.435 66.667 0.00 0.00 0.00 5.92
23 24 4.069232 TGAGGAGGTTGGAGCGCG 62.069 66.667 0.00 0.00 0.00 6.86
87 88 4.081030 CTGCAGCTCGCGGTGTTG 62.081 66.667 6.13 9.36 46.97 3.33
88 89 4.600576 TGCAGCTCGCGGTGTTGA 62.601 61.111 17.31 4.02 46.97 3.18
89 90 4.077188 GCAGCTCGCGGTGTTGAC 62.077 66.667 17.31 7.79 40.67 3.18
90 91 2.661537 CAGCTCGCGGTGTTGACA 60.662 61.111 6.13 0.00 34.04 3.58
91 92 2.661866 AGCTCGCGGTGTTGACAC 60.662 61.111 6.13 5.72 45.72 3.67
102 103 3.253371 GTGTTGACACCGACAATGAAG 57.747 47.619 2.87 0.00 40.85 3.02
103 104 2.032030 GTGTTGACACCGACAATGAAGG 60.032 50.000 2.87 0.00 40.85 3.46
104 105 2.158885 TGTTGACACCGACAATGAAGGA 60.159 45.455 5.86 0.00 33.89 3.36
105 106 2.455674 TGACACCGACAATGAAGGAG 57.544 50.000 5.86 1.21 0.00 3.69
106 107 1.001974 TGACACCGACAATGAAGGAGG 59.998 52.381 5.86 1.34 0.00 4.30
107 108 1.002087 GACACCGACAATGAAGGAGGT 59.998 52.381 5.86 3.97 0.00 3.85
108 109 1.420138 ACACCGACAATGAAGGAGGTT 59.580 47.619 5.86 0.00 0.00 3.50
109 110 1.806542 CACCGACAATGAAGGAGGTTG 59.193 52.381 5.86 0.00 0.00 3.77
110 111 0.804989 CCGACAATGAAGGAGGTTGC 59.195 55.000 0.00 0.00 0.00 4.17
111 112 1.522668 CGACAATGAAGGAGGTTGCA 58.477 50.000 0.00 0.00 0.00 4.08
112 113 1.466167 CGACAATGAAGGAGGTTGCAG 59.534 52.381 0.00 0.00 0.00 4.41
113 114 1.815003 GACAATGAAGGAGGTTGCAGG 59.185 52.381 0.00 0.00 0.00 4.85
114 115 0.529378 CAATGAAGGAGGTTGCAGGC 59.471 55.000 0.00 0.00 0.00 4.85
115 116 0.962356 AATGAAGGAGGTTGCAGGCG 60.962 55.000 0.00 0.00 0.00 5.52
116 117 3.435186 GAAGGAGGTTGCAGGCGC 61.435 66.667 0.00 0.00 39.24 6.53
122 123 4.849310 GGTTGCAGGCGCCGGATA 62.849 66.667 31.49 15.25 37.32 2.59
123 124 3.573491 GTTGCAGGCGCCGGATAC 61.573 66.667 31.49 21.35 37.32 2.24
124 125 4.849310 TTGCAGGCGCCGGATACC 62.849 66.667 31.49 12.87 37.32 2.73
147 148 2.670459 AGGCATGTGCATGGACGA 59.330 55.556 13.03 2.52 44.36 4.20
148 149 1.450848 AGGCATGTGCATGGACGAG 60.451 57.895 13.03 8.55 44.36 4.18
149 150 1.450134 GGCATGTGCATGGACGAGA 60.450 57.895 13.03 0.00 44.36 4.04
150 151 1.434622 GGCATGTGCATGGACGAGAG 61.435 60.000 13.03 3.58 44.36 3.20
151 152 1.434622 GCATGTGCATGGACGAGAGG 61.435 60.000 13.03 0.00 41.59 3.69
152 153 0.812811 CATGTGCATGGACGAGAGGG 60.813 60.000 13.03 0.00 35.24 4.30
153 154 2.512515 GTGCATGGACGAGAGGGC 60.513 66.667 0.10 0.00 0.00 5.19
154 155 4.147449 TGCATGGACGAGAGGGCG 62.147 66.667 0.00 0.00 37.29 6.13
155 156 4.899239 GCATGGACGAGAGGGCGG 62.899 72.222 0.00 0.00 35.12 6.13
156 157 4.899239 CATGGACGAGAGGGCGGC 62.899 72.222 0.00 0.00 38.96 6.53
162 163 4.856607 CGAGAGGGCGGCGACTTC 62.857 72.222 18.12 18.12 0.00 3.01
163 164 3.760035 GAGAGGGCGGCGACTTCA 61.760 66.667 27.20 0.00 0.00 3.02
164 165 3.077556 AGAGGGCGGCGACTTCAT 61.078 61.111 27.20 9.25 0.00 2.57
165 166 2.586357 GAGGGCGGCGACTTCATC 60.586 66.667 20.90 6.02 0.00 2.92
166 167 3.371097 GAGGGCGGCGACTTCATCA 62.371 63.158 20.90 0.00 0.00 3.07
167 168 2.892425 GGGCGGCGACTTCATCAG 60.892 66.667 14.66 0.00 0.00 2.90
168 169 3.567797 GGCGGCGACTTCATCAGC 61.568 66.667 12.98 0.00 0.00 4.26
169 170 2.815211 GCGGCGACTTCATCAGCA 60.815 61.111 12.98 0.00 0.00 4.41
170 171 2.390599 GCGGCGACTTCATCAGCAA 61.391 57.895 12.98 0.00 0.00 3.91
171 172 1.709147 GCGGCGACTTCATCAGCAAT 61.709 55.000 12.98 0.00 0.00 3.56
172 173 0.027194 CGGCGACTTCATCAGCAATG 59.973 55.000 0.00 0.00 36.65 2.82
173 174 1.089920 GGCGACTTCATCAGCAATGT 58.910 50.000 0.00 0.00 36.68 2.71
174 175 1.063174 GGCGACTTCATCAGCAATGTC 59.937 52.381 0.00 0.00 36.68 3.06
175 176 1.063174 GCGACTTCATCAGCAATGTCC 59.937 52.381 0.00 0.00 36.68 4.02
176 177 1.325640 CGACTTCATCAGCAATGTCCG 59.674 52.381 0.00 0.00 36.68 4.79
177 178 2.621338 GACTTCATCAGCAATGTCCGA 58.379 47.619 0.00 0.00 36.68 4.55
178 179 2.349886 GACTTCATCAGCAATGTCCGAC 59.650 50.000 0.00 0.00 36.68 4.79
179 180 2.289631 ACTTCATCAGCAATGTCCGACA 60.290 45.455 3.10 3.10 36.68 4.35
180 181 2.014335 TCATCAGCAATGTCCGACAG 57.986 50.000 7.41 0.00 36.68 3.51
181 182 0.376152 CATCAGCAATGTCCGACAGC 59.624 55.000 7.41 6.04 0.00 4.40
182 183 0.036105 ATCAGCAATGTCCGACAGCA 60.036 50.000 13.52 0.00 0.00 4.41
183 184 0.036105 TCAGCAATGTCCGACAGCAT 60.036 50.000 13.52 0.00 0.00 3.79
184 185 0.098200 CAGCAATGTCCGACAGCATG 59.902 55.000 13.52 10.24 46.00 4.06
196 197 2.981302 AGCATGTACAGCTGCGGA 59.019 55.556 15.27 0.00 43.17 5.54
197 198 1.153489 AGCATGTACAGCTGCGGAG 60.153 57.895 15.27 0.00 43.17 4.63
198 199 2.176273 GCATGTACAGCTGCGGAGG 61.176 63.158 15.27 1.98 0.00 4.30
199 200 2.176273 CATGTACAGCTGCGGAGGC 61.176 63.158 15.27 0.00 40.52 4.70
200 201 2.362369 ATGTACAGCTGCGGAGGCT 61.362 57.895 15.27 0.02 40.82 4.58
201 202 2.202810 GTACAGCTGCGGAGGCTC 60.203 66.667 15.27 5.78 40.82 4.70
202 203 2.679996 TACAGCTGCGGAGGCTCA 60.680 61.111 15.27 0.00 40.82 4.26
203 204 2.282783 TACAGCTGCGGAGGCTCAA 61.283 57.895 15.27 0.00 40.82 3.02
204 205 2.507110 TACAGCTGCGGAGGCTCAAC 62.507 60.000 15.27 7.97 40.82 3.18
205 206 3.317571 AGCTGCGGAGGCTCAACT 61.318 61.111 17.69 2.58 40.82 3.16
206 207 2.359230 GCTGCGGAGGCTCAACTT 60.359 61.111 17.69 0.00 40.82 2.66
207 208 2.684843 GCTGCGGAGGCTCAACTTG 61.685 63.158 17.69 3.29 40.82 3.16
208 209 2.669569 TGCGGAGGCTCAACTTGC 60.670 61.111 17.69 11.74 40.82 4.01
209 210 2.359230 GCGGAGGCTCAACTTGCT 60.359 61.111 17.69 0.00 35.83 3.91
210 211 2.684843 GCGGAGGCTCAACTTGCTG 61.685 63.158 17.69 0.00 35.83 4.41
211 212 2.684843 CGGAGGCTCAACTTGCTGC 61.685 63.158 17.69 0.00 0.00 5.25
212 213 1.303155 GGAGGCTCAACTTGCTGCT 60.303 57.895 17.69 0.00 0.00 4.24
213 214 1.304509 GGAGGCTCAACTTGCTGCTC 61.305 60.000 17.69 0.00 0.00 4.26
214 215 0.604780 GAGGCTCAACTTGCTGCTCA 60.605 55.000 10.25 0.00 0.00 4.26
215 216 0.888285 AGGCTCAACTTGCTGCTCAC 60.888 55.000 0.00 0.00 0.00 3.51
216 217 0.888285 GGCTCAACTTGCTGCTCACT 60.888 55.000 0.00 0.00 0.00 3.41
217 218 1.609061 GGCTCAACTTGCTGCTCACTA 60.609 52.381 0.00 0.00 0.00 2.74
218 219 1.462670 GCTCAACTTGCTGCTCACTAC 59.537 52.381 0.00 0.00 0.00 2.73
219 220 2.759191 CTCAACTTGCTGCTCACTACA 58.241 47.619 0.00 0.00 0.00 2.74
220 221 2.735663 CTCAACTTGCTGCTCACTACAG 59.264 50.000 0.00 0.00 38.22 2.74
221 222 1.802960 CAACTTGCTGCTCACTACAGG 59.197 52.381 0.00 0.00 35.62 4.00
222 223 0.322975 ACTTGCTGCTCACTACAGGG 59.677 55.000 0.00 0.00 35.62 4.45
223 224 0.610174 CTTGCTGCTCACTACAGGGA 59.390 55.000 0.00 0.00 35.62 4.20
224 225 0.610174 TTGCTGCTCACTACAGGGAG 59.390 55.000 4.02 4.02 35.62 4.30
225 226 0.251787 TGCTGCTCACTACAGGGAGA 60.252 55.000 12.74 0.00 35.62 3.71
226 227 1.118838 GCTGCTCACTACAGGGAGAT 58.881 55.000 12.74 0.00 35.62 2.75
227 228 1.202510 GCTGCTCACTACAGGGAGATG 60.203 57.143 12.74 4.98 35.62 2.90
228 229 0.826715 TGCTCACTACAGGGAGATGC 59.173 55.000 12.74 0.00 32.87 3.91
229 230 1.118838 GCTCACTACAGGGAGATGCT 58.881 55.000 12.74 0.00 32.87 3.79
230 231 1.068434 GCTCACTACAGGGAGATGCTC 59.932 57.143 12.74 0.00 32.87 4.26
231 232 2.382882 CTCACTACAGGGAGATGCTCA 58.617 52.381 2.07 0.00 32.87 4.26
232 233 2.762887 CTCACTACAGGGAGATGCTCAA 59.237 50.000 2.07 0.00 32.87 3.02
233 234 2.497675 TCACTACAGGGAGATGCTCAAC 59.502 50.000 0.00 0.00 31.08 3.18
234 235 2.234661 CACTACAGGGAGATGCTCAACA 59.765 50.000 0.00 0.00 31.08 3.33
235 236 2.234908 ACTACAGGGAGATGCTCAACAC 59.765 50.000 0.00 0.00 31.08 3.32
236 237 0.036952 ACAGGGAGATGCTCAACACG 60.037 55.000 0.00 0.00 31.08 4.49
237 238 1.078848 AGGGAGATGCTCAACACGC 60.079 57.895 0.00 0.00 31.08 5.34
238 239 2.456119 GGGAGATGCTCAACACGCG 61.456 63.158 3.53 3.53 31.08 6.01
239 240 2.456119 GGAGATGCTCAACACGCGG 61.456 63.158 12.47 1.27 31.08 6.46
240 241 1.446099 GAGATGCTCAACACGCGGA 60.446 57.895 12.47 0.00 0.00 5.54
241 242 1.416813 GAGATGCTCAACACGCGGAG 61.417 60.000 12.47 8.53 0.00 4.63
256 257 2.063156 CGGAGCAGATGTAGATCAGC 57.937 55.000 8.97 8.97 40.53 4.26
257 258 1.665448 CGGAGCAGATGTAGATCAGCG 60.665 57.143 10.91 0.00 43.93 5.18
258 259 1.339610 GGAGCAGATGTAGATCAGCGT 59.660 52.381 10.91 1.31 43.93 5.07
259 260 2.392821 GAGCAGATGTAGATCAGCGTG 58.607 52.381 10.91 0.00 43.93 5.34
260 261 1.753649 AGCAGATGTAGATCAGCGTGT 59.246 47.619 10.91 0.00 43.93 4.49
261 262 1.857217 GCAGATGTAGATCAGCGTGTG 59.143 52.381 1.43 0.00 37.54 3.82
262 263 2.467838 CAGATGTAGATCAGCGTGTGG 58.532 52.381 2.30 0.00 37.54 4.17
263 264 2.103373 AGATGTAGATCAGCGTGTGGT 58.897 47.619 2.30 0.00 37.54 4.16
264 265 2.497675 AGATGTAGATCAGCGTGTGGTT 59.502 45.455 2.30 0.00 37.54 3.67
265 266 2.363788 TGTAGATCAGCGTGTGGTTC 57.636 50.000 0.00 0.00 0.00 3.62
266 267 1.616374 TGTAGATCAGCGTGTGGTTCA 59.384 47.619 0.00 0.00 0.00 3.18
267 268 2.233676 TGTAGATCAGCGTGTGGTTCAT 59.766 45.455 0.00 0.00 0.00 2.57
268 269 2.479566 AGATCAGCGTGTGGTTCATT 57.520 45.000 0.00 0.00 0.00 2.57
269 270 2.783135 AGATCAGCGTGTGGTTCATTT 58.217 42.857 0.00 0.00 0.00 2.32
270 271 3.937814 AGATCAGCGTGTGGTTCATTTA 58.062 40.909 0.00 0.00 0.00 1.40
271 272 3.935203 AGATCAGCGTGTGGTTCATTTAG 59.065 43.478 0.00 0.00 0.00 1.85
272 273 1.804151 TCAGCGTGTGGTTCATTTAGC 59.196 47.619 0.00 0.00 0.00 3.09
273 274 1.806542 CAGCGTGTGGTTCATTTAGCT 59.193 47.619 0.00 0.00 0.00 3.32
274 275 3.000041 CAGCGTGTGGTTCATTTAGCTA 59.000 45.455 0.00 0.00 31.98 3.32
275 276 3.062639 CAGCGTGTGGTTCATTTAGCTAG 59.937 47.826 0.00 0.00 31.98 3.42
276 277 3.000727 GCGTGTGGTTCATTTAGCTAGT 58.999 45.455 0.00 0.00 0.00 2.57
277 278 3.181520 GCGTGTGGTTCATTTAGCTAGTG 60.182 47.826 0.00 0.00 0.00 2.74
278 279 3.370978 CGTGTGGTTCATTTAGCTAGTGG 59.629 47.826 7.97 0.00 0.00 4.00
279 280 4.324267 GTGTGGTTCATTTAGCTAGTGGT 58.676 43.478 7.97 0.00 0.00 4.16
280 281 4.392138 GTGTGGTTCATTTAGCTAGTGGTC 59.608 45.833 7.97 3.23 0.00 4.02
281 282 4.286032 TGTGGTTCATTTAGCTAGTGGTCT 59.714 41.667 7.97 0.00 0.00 3.85
282 283 4.870991 GTGGTTCATTTAGCTAGTGGTCTC 59.129 45.833 7.97 0.00 0.00 3.36
283 284 4.113354 GGTTCATTTAGCTAGTGGTCTCG 58.887 47.826 7.97 0.00 0.00 4.04
284 285 3.438297 TCATTTAGCTAGTGGTCTCGC 57.562 47.619 7.97 0.00 33.37 5.03
285 286 3.024547 TCATTTAGCTAGTGGTCTCGCT 58.975 45.455 7.97 0.00 43.49 4.93
286 287 2.941453 TTTAGCTAGTGGTCTCGCTG 57.059 50.000 0.00 0.00 41.66 5.18
287 288 1.835494 TTAGCTAGTGGTCTCGCTGT 58.165 50.000 0.00 0.00 41.66 4.40
288 289 1.835494 TAGCTAGTGGTCTCGCTGTT 58.165 50.000 4.86 0.00 41.66 3.16
289 290 0.969894 AGCTAGTGGTCTCGCTGTTT 59.030 50.000 0.00 0.00 40.43 2.83
290 291 1.071605 GCTAGTGGTCTCGCTGTTTG 58.928 55.000 0.00 0.00 35.12 2.93
291 292 1.605712 GCTAGTGGTCTCGCTGTTTGT 60.606 52.381 0.00 0.00 35.12 2.83
292 293 2.755650 CTAGTGGTCTCGCTGTTTGTT 58.244 47.619 0.00 0.00 35.12 2.83
293 294 1.583054 AGTGGTCTCGCTGTTTGTTC 58.417 50.000 0.00 0.00 31.64 3.18
294 295 1.134521 AGTGGTCTCGCTGTTTGTTCA 60.135 47.619 0.00 0.00 31.64 3.18
295 296 1.003866 GTGGTCTCGCTGTTTGTTCAC 60.004 52.381 0.00 0.00 0.00 3.18
296 297 1.134521 TGGTCTCGCTGTTTGTTCACT 60.135 47.619 0.00 0.00 0.00 3.41
297 298 1.261619 GGTCTCGCTGTTTGTTCACTG 59.738 52.381 0.00 0.00 0.00 3.66
298 299 1.261619 GTCTCGCTGTTTGTTCACTGG 59.738 52.381 0.00 0.00 0.00 4.00
299 300 1.138069 TCTCGCTGTTTGTTCACTGGA 59.862 47.619 0.00 0.00 0.00 3.86
300 301 2.146342 CTCGCTGTTTGTTCACTGGAT 58.854 47.619 0.00 0.00 0.00 3.41
301 302 2.549754 CTCGCTGTTTGTTCACTGGATT 59.450 45.455 0.00 0.00 0.00 3.01
302 303 3.734463 TCGCTGTTTGTTCACTGGATTA 58.266 40.909 0.00 0.00 0.00 1.75
303 304 3.745975 TCGCTGTTTGTTCACTGGATTAG 59.254 43.478 0.00 0.00 0.00 1.73
304 305 3.745975 CGCTGTTTGTTCACTGGATTAGA 59.254 43.478 0.00 0.00 0.00 2.10
305 306 4.393062 CGCTGTTTGTTCACTGGATTAGAT 59.607 41.667 0.00 0.00 0.00 1.98
306 307 5.580691 CGCTGTTTGTTCACTGGATTAGATA 59.419 40.000 0.00 0.00 0.00 1.98
307 308 6.237942 CGCTGTTTGTTCACTGGATTAGATAG 60.238 42.308 0.00 0.00 0.00 2.08
308 309 6.818644 GCTGTTTGTTCACTGGATTAGATAGA 59.181 38.462 0.00 0.00 0.00 1.98
309 310 7.010923 GCTGTTTGTTCACTGGATTAGATAGAG 59.989 40.741 0.00 0.00 0.00 2.43
310 311 6.818644 TGTTTGTTCACTGGATTAGATAGAGC 59.181 38.462 0.00 0.00 0.00 4.09
311 312 6.544928 TTGTTCACTGGATTAGATAGAGCA 57.455 37.500 0.00 0.00 0.00 4.26
312 313 6.154203 TGTTCACTGGATTAGATAGAGCAG 57.846 41.667 0.00 0.00 0.00 4.24
313 314 4.862902 TCACTGGATTAGATAGAGCAGC 57.137 45.455 0.00 0.00 0.00 5.25
314 315 4.218312 TCACTGGATTAGATAGAGCAGCA 58.782 43.478 0.00 0.00 0.00 4.41
315 316 4.280425 TCACTGGATTAGATAGAGCAGCAG 59.720 45.833 0.00 0.00 0.00 4.24
316 317 4.280425 CACTGGATTAGATAGAGCAGCAGA 59.720 45.833 0.00 0.00 0.00 4.26
317 318 4.898265 ACTGGATTAGATAGAGCAGCAGAA 59.102 41.667 0.00 0.00 0.00 3.02
318 319 5.010922 ACTGGATTAGATAGAGCAGCAGAAG 59.989 44.000 0.00 0.00 0.00 2.85
319 320 4.898265 TGGATTAGATAGAGCAGCAGAAGT 59.102 41.667 0.00 0.00 0.00 3.01
320 321 5.365025 TGGATTAGATAGAGCAGCAGAAGTT 59.635 40.000 0.00 0.00 0.00 2.66
321 322 5.695816 GGATTAGATAGAGCAGCAGAAGTTG 59.304 44.000 0.00 0.00 0.00 3.16
322 323 5.667539 TTAGATAGAGCAGCAGAAGTTGT 57.332 39.130 0.00 0.00 0.00 3.32
323 324 3.859443 AGATAGAGCAGCAGAAGTTGTG 58.141 45.455 0.00 0.00 0.00 3.33
324 325 3.513119 AGATAGAGCAGCAGAAGTTGTGA 59.487 43.478 3.80 0.00 0.00 3.58
325 326 2.166821 AGAGCAGCAGAAGTTGTGAG 57.833 50.000 3.80 0.00 0.00 3.51
326 327 1.155042 GAGCAGCAGAAGTTGTGAGG 58.845 55.000 3.80 0.00 0.00 3.86
327 328 0.888285 AGCAGCAGAAGTTGTGAGGC 60.888 55.000 3.80 6.24 0.00 4.70
328 329 1.864862 CAGCAGAAGTTGTGAGGCG 59.135 57.895 3.80 0.00 0.00 5.52
329 330 1.302033 AGCAGAAGTTGTGAGGCGG 60.302 57.895 3.80 0.00 0.00 6.13
330 331 2.328099 GCAGAAGTTGTGAGGCGGG 61.328 63.158 3.80 0.00 0.00 6.13
331 332 1.672356 CAGAAGTTGTGAGGCGGGG 60.672 63.158 0.00 0.00 0.00 5.73
332 333 2.359975 GAAGTTGTGAGGCGGGGG 60.360 66.667 0.00 0.00 0.00 5.40
333 334 2.852075 AAGTTGTGAGGCGGGGGA 60.852 61.111 0.00 0.00 0.00 4.81
334 335 2.804828 GAAGTTGTGAGGCGGGGGAG 62.805 65.000 0.00 0.00 0.00 4.30
335 336 4.410400 GTTGTGAGGCGGGGGAGG 62.410 72.222 0.00 0.00 0.00 4.30
340 341 4.153330 GAGGCGGGGGAGGGACTA 62.153 72.222 0.00 0.00 41.55 2.59
341 342 4.477119 AGGCGGGGGAGGGACTAC 62.477 72.222 0.00 0.00 41.55 2.73
342 343 4.791069 GGCGGGGGAGGGACTACA 62.791 72.222 0.00 0.00 44.82 2.74
343 344 2.446036 GCGGGGGAGGGACTACAT 60.446 66.667 0.00 0.00 44.82 2.29
344 345 2.808206 GCGGGGGAGGGACTACATG 61.808 68.421 0.00 0.00 44.82 3.21
345 346 2.808206 CGGGGGAGGGACTACATGC 61.808 68.421 0.00 0.00 44.82 4.06
346 347 1.692749 GGGGGAGGGACTACATGCA 60.693 63.158 0.00 0.00 44.82 3.96
347 348 1.279025 GGGGGAGGGACTACATGCAA 61.279 60.000 0.00 0.00 44.82 4.08
348 349 0.181350 GGGGAGGGACTACATGCAAG 59.819 60.000 0.00 0.00 44.82 4.01
349 350 0.181350 GGGAGGGACTACATGCAAGG 59.819 60.000 0.00 0.00 44.82 3.61
350 351 1.204146 GGAGGGACTACATGCAAGGA 58.796 55.000 0.00 0.00 40.63 3.36
351 352 1.139853 GGAGGGACTACATGCAAGGAG 59.860 57.143 0.00 0.00 40.63 3.69
352 353 1.139853 GAGGGACTACATGCAAGGAGG 59.860 57.143 6.07 0.00 41.55 4.30
353 354 1.204146 GGGACTACATGCAAGGAGGA 58.796 55.000 6.07 0.00 0.00 3.71
354 355 1.134371 GGGACTACATGCAAGGAGGAC 60.134 57.143 6.07 0.00 0.00 3.85
355 356 1.834263 GGACTACATGCAAGGAGGACT 59.166 52.381 6.07 0.00 0.00 3.85
356 357 3.031736 GGACTACATGCAAGGAGGACTA 58.968 50.000 6.07 0.00 0.00 2.59
357 358 3.068873 GGACTACATGCAAGGAGGACTAG 59.931 52.174 6.07 0.00 0.00 2.57
358 359 3.034635 ACTACATGCAAGGAGGACTAGG 58.965 50.000 6.07 0.00 0.00 3.02
359 360 0.543749 ACATGCAAGGAGGACTAGGC 59.456 55.000 0.00 0.00 0.00 3.93
360 361 0.531532 CATGCAAGGAGGACTAGGCG 60.532 60.000 0.00 0.00 33.63 5.52
361 362 1.690219 ATGCAAGGAGGACTAGGCGG 61.690 60.000 0.00 0.00 33.63 6.13
362 363 2.359967 GCAAGGAGGACTAGGCGGT 61.360 63.158 0.00 0.00 0.00 5.68
363 364 1.517832 CAAGGAGGACTAGGCGGTG 59.482 63.158 0.00 0.00 0.00 4.94
364 365 1.686110 AAGGAGGACTAGGCGGTGG 60.686 63.158 0.00 0.00 0.00 4.61
365 366 3.851128 GGAGGACTAGGCGGTGGC 61.851 72.222 0.00 0.00 38.90 5.01
422 423 4.827087 CACCGCGGCAGCTCATCT 62.827 66.667 28.58 0.00 42.32 2.90
423 424 4.087892 ACCGCGGCAGCTCATCTT 62.088 61.111 28.58 0.00 42.32 2.40
424 425 2.821366 CCGCGGCAGCTCATCTTT 60.821 61.111 14.67 0.00 42.32 2.52
425 426 2.401766 CCGCGGCAGCTCATCTTTT 61.402 57.895 14.67 0.00 42.32 2.27
426 427 1.061570 CGCGGCAGCTCATCTTTTC 59.938 57.895 7.38 0.00 42.32 2.29
427 428 1.638388 CGCGGCAGCTCATCTTTTCA 61.638 55.000 7.38 0.00 42.32 2.69
428 429 0.179179 GCGGCAGCTCATCTTTTCAC 60.179 55.000 0.00 0.00 41.01 3.18
429 430 0.449388 CGGCAGCTCATCTTTTCACC 59.551 55.000 0.00 0.00 0.00 4.02
430 431 1.538047 GGCAGCTCATCTTTTCACCA 58.462 50.000 0.00 0.00 0.00 4.17
431 432 1.471684 GGCAGCTCATCTTTTCACCAG 59.528 52.381 0.00 0.00 0.00 4.00
432 433 2.430465 GCAGCTCATCTTTTCACCAGA 58.570 47.619 0.00 0.00 0.00 3.86
433 434 2.419324 GCAGCTCATCTTTTCACCAGAG 59.581 50.000 0.00 0.00 0.00 3.35
434 435 3.867600 GCAGCTCATCTTTTCACCAGAGA 60.868 47.826 0.00 0.00 0.00 3.10
435 436 4.321718 CAGCTCATCTTTTCACCAGAGAA 58.678 43.478 0.00 0.00 0.00 2.87
436 437 4.758674 CAGCTCATCTTTTCACCAGAGAAA 59.241 41.667 0.00 0.00 35.82 2.52
437 438 4.759183 AGCTCATCTTTTCACCAGAGAAAC 59.241 41.667 0.00 0.00 37.24 2.78
438 439 4.083057 GCTCATCTTTTCACCAGAGAAACC 60.083 45.833 0.00 0.00 37.24 3.27
439 440 5.310409 TCATCTTTTCACCAGAGAAACCT 57.690 39.130 0.00 0.00 37.24 3.50
440 441 5.065914 TCATCTTTTCACCAGAGAAACCTG 58.934 41.667 0.00 0.00 37.24 4.00
441 442 4.771114 TCTTTTCACCAGAGAAACCTGA 57.229 40.909 0.00 0.00 37.24 3.86
442 443 4.451900 TCTTTTCACCAGAGAAACCTGAC 58.548 43.478 0.00 0.00 37.24 3.51
443 444 2.526304 TTCACCAGAGAAACCTGACG 57.474 50.000 0.00 0.00 36.29 4.35
444 445 1.699730 TCACCAGAGAAACCTGACGA 58.300 50.000 0.00 0.00 36.29 4.20
445 446 1.613925 TCACCAGAGAAACCTGACGAG 59.386 52.381 0.00 0.00 36.29 4.18
446 447 0.969894 ACCAGAGAAACCTGACGAGG 59.030 55.000 0.00 0.00 46.21 4.63
447 448 0.247736 CCAGAGAAACCTGACGAGGG 59.752 60.000 0.00 0.00 44.84 4.30
448 449 1.257743 CAGAGAAACCTGACGAGGGA 58.742 55.000 0.00 0.00 44.84 4.20
449 450 1.618837 CAGAGAAACCTGACGAGGGAA 59.381 52.381 0.00 0.00 44.84 3.97
450 451 1.896465 AGAGAAACCTGACGAGGGAAG 59.104 52.381 0.00 0.00 44.84 3.46
451 452 1.619332 GAGAAACCTGACGAGGGAAGT 59.381 52.381 0.00 0.00 44.84 3.01
452 453 1.344763 AGAAACCTGACGAGGGAAGTG 59.655 52.381 0.00 0.00 44.84 3.16
453 454 0.396811 AAACCTGACGAGGGAAGTGG 59.603 55.000 0.00 0.00 44.84 4.00
454 455 2.113243 AACCTGACGAGGGAAGTGGC 62.113 60.000 0.00 0.00 44.84 5.01
455 456 2.286523 CCTGACGAGGGAAGTGGCT 61.287 63.158 0.00 0.00 35.40 4.75
456 457 1.079543 CTGACGAGGGAAGTGGCTG 60.080 63.158 0.00 0.00 0.00 4.85
457 458 2.266055 GACGAGGGAAGTGGCTGG 59.734 66.667 0.00 0.00 0.00 4.85
458 459 2.526873 ACGAGGGAAGTGGCTGGT 60.527 61.111 0.00 0.00 0.00 4.00
459 460 2.046892 CGAGGGAAGTGGCTGGTG 60.047 66.667 0.00 0.00 0.00 4.17
460 461 2.352805 GAGGGAAGTGGCTGGTGG 59.647 66.667 0.00 0.00 0.00 4.61
461 462 3.260100 AGGGAAGTGGCTGGTGGG 61.260 66.667 0.00 0.00 0.00 4.61
462 463 3.580319 GGGAAGTGGCTGGTGGGT 61.580 66.667 0.00 0.00 0.00 4.51
463 464 2.228480 GGGAAGTGGCTGGTGGGTA 61.228 63.158 0.00 0.00 0.00 3.69
464 465 1.765074 GGAAGTGGCTGGTGGGTAA 59.235 57.895 0.00 0.00 0.00 2.85
465 466 0.322546 GGAAGTGGCTGGTGGGTAAG 60.323 60.000 0.00 0.00 0.00 2.34
466 467 0.690762 GAAGTGGCTGGTGGGTAAGA 59.309 55.000 0.00 0.00 0.00 2.10
467 468 1.282157 GAAGTGGCTGGTGGGTAAGAT 59.718 52.381 0.00 0.00 0.00 2.40
468 469 0.620556 AGTGGCTGGTGGGTAAGATG 59.379 55.000 0.00 0.00 0.00 2.90
469 470 0.394352 GTGGCTGGTGGGTAAGATGG 60.394 60.000 0.00 0.00 0.00 3.51
470 471 1.227383 GGCTGGTGGGTAAGATGGG 59.773 63.158 0.00 0.00 0.00 4.00
471 472 1.227383 GCTGGTGGGTAAGATGGGG 59.773 63.158 0.00 0.00 0.00 4.96
472 473 1.571773 GCTGGTGGGTAAGATGGGGT 61.572 60.000 0.00 0.00 0.00 4.95
473 474 0.546598 CTGGTGGGTAAGATGGGGTC 59.453 60.000 0.00 0.00 0.00 4.46
474 475 0.917333 TGGTGGGTAAGATGGGGTCC 60.917 60.000 0.00 0.00 0.00 4.46
475 476 1.642513 GGTGGGTAAGATGGGGTCCC 61.643 65.000 0.00 0.00 38.68 4.46
488 489 4.788925 TGGGGTCCCAATGAGTTAATAG 57.211 45.455 10.98 0.00 44.12 1.73
489 490 3.461831 TGGGGTCCCAATGAGTTAATAGG 59.538 47.826 10.98 0.00 44.12 2.57
490 491 3.181433 GGGGTCCCAATGAGTTAATAGGG 60.181 52.174 10.98 0.00 37.65 3.53
491 492 3.487372 GGTCCCAATGAGTTAATAGGGC 58.513 50.000 0.00 0.00 36.24 5.19
492 493 3.138468 GGTCCCAATGAGTTAATAGGGCT 59.862 47.826 0.00 0.00 36.24 5.19
493 494 4.349930 GGTCCCAATGAGTTAATAGGGCTA 59.650 45.833 0.00 0.00 36.24 3.93
494 495 5.513267 GGTCCCAATGAGTTAATAGGGCTAG 60.513 48.000 0.00 0.00 36.24 3.42
495 496 4.041691 TCCCAATGAGTTAATAGGGCTAGC 59.958 45.833 6.04 6.04 36.24 3.42
496 497 4.327680 CCAATGAGTTAATAGGGCTAGCC 58.672 47.826 26.55 26.55 0.00 3.93
606 618 4.616604 CGTGATGGAGCATGACAATGTTTT 60.617 41.667 0.00 0.00 36.08 2.43
727 752 1.048601 GCAGATGAGATTACCCGGGA 58.951 55.000 32.02 5.69 0.00 5.14
767 797 2.004583 ACGACATGTCCATACCGTTG 57.995 50.000 20.03 5.25 0.00 4.10
887 932 2.548057 ACCGAGTTCGTTAGTCGTTACA 59.452 45.455 13.55 0.00 46.07 2.41
902 950 6.104665 AGTCGTTACACTATAAAAAGGAGGC 58.895 40.000 0.00 0.00 0.00 4.70
941 995 2.195567 GCACCACCAAAGCAGAGCA 61.196 57.895 0.00 0.00 0.00 4.26
975 1036 2.795175 TCCGCTTAGCTTATCCTTCG 57.205 50.000 1.76 0.00 0.00 3.79
976 1037 1.140816 CCGCTTAGCTTATCCTTCGC 58.859 55.000 1.76 0.00 0.00 4.70
977 1038 0.778815 CGCTTAGCTTATCCTTCGCG 59.221 55.000 0.00 0.00 0.00 5.87
980 1041 0.596600 TTAGCTTATCCTTCGCGCCG 60.597 55.000 0.00 0.00 0.00 6.46
1107 1184 1.134487 GCAGCGCGACAGCATTAAA 59.866 52.632 12.10 0.00 45.49 1.52
1111 1188 0.446222 GCGCGACAGCATTAAAGGAA 59.554 50.000 12.10 0.00 45.49 3.36
1128 1205 1.990563 GGAAGTACGTCCATGTCAACG 59.009 52.381 21.33 10.00 44.22 4.10
1405 1528 1.741770 CCTCTGCCTAACACACGGC 60.742 63.158 0.00 0.00 46.46 5.68
1416 1552 1.079197 CACACGGCTGCATGGACTA 60.079 57.895 0.50 0.00 0.00 2.59
1417 1553 1.079127 ACACGGCTGCATGGACTAC 60.079 57.895 0.50 0.00 0.00 2.73
1418 1554 2.167219 CACGGCTGCATGGACTACG 61.167 63.158 0.50 0.00 0.00 3.51
1419 1555 3.264897 CGGCTGCATGGACTACGC 61.265 66.667 0.50 0.00 0.00 4.42
1431 1567 4.271170 CTACGCACGCAGCATCGC 62.271 66.667 0.00 0.00 46.13 4.58
1434 1571 2.677573 TACGCACGCAGCATCGCTAT 62.678 55.000 0.00 0.00 46.13 2.97
1573 1836 3.743396 CAGTCTGTCTTTGTACCAGCTTC 59.257 47.826 0.00 0.00 0.00 3.86
1593 1857 1.067060 CGGCTTAAAAATAGGCCCAGC 59.933 52.381 0.00 0.00 41.35 4.85
1651 4942 2.489722 GTCTCTTTCCTTGATTGTGCCC 59.510 50.000 0.00 0.00 0.00 5.36
1664 4955 1.376683 GTGCCCGATTACCAGTGCA 60.377 57.895 0.00 0.00 0.00 4.57
1717 5009 2.248431 GTGTCGCGTCTTTGGCAC 59.752 61.111 5.77 0.00 0.00 5.01
1751 5046 3.126001 TGACCATTTCGCTTCTTCACT 57.874 42.857 0.00 0.00 0.00 3.41
1752 5047 4.265904 TGACCATTTCGCTTCTTCACTA 57.734 40.909 0.00 0.00 0.00 2.74
1764 5059 4.081420 GCTTCTTCACTATCTCCAACAGGA 60.081 45.833 0.00 0.00 0.00 3.86
1872 5173 8.888836 ATATCATAATCTTCAATGGCCATGAA 57.111 30.769 21.63 21.66 35.60 2.57
1873 5174 7.792364 ATCATAATCTTCAATGGCCATGAAT 57.208 32.000 21.63 7.81 36.30 2.57
1938 5288 8.870160 TTTCGTGAAATCATCAACATTTTTCT 57.130 26.923 0.00 0.00 40.50 2.52
2151 5507 3.246226 CCGCGAACATTTCTAGAATGGAG 59.754 47.826 8.23 0.00 32.14 3.86
2172 5569 7.230747 TGGAGGAACATTCTTTTGATACTTGA 58.769 34.615 0.00 0.00 0.00 3.02
2214 5649 7.835634 TTCAAGAACATTTTGTAACAAACCC 57.164 32.000 0.00 0.00 0.00 4.11
2215 5650 7.176589 TCAAGAACATTTTGTAACAAACCCT 57.823 32.000 0.00 0.00 0.00 4.34
2216 5651 7.616313 TCAAGAACATTTTGTAACAAACCCTT 58.384 30.769 0.00 0.00 0.00 3.95
2217 5652 8.750298 TCAAGAACATTTTGTAACAAACCCTTA 58.250 29.630 0.00 0.00 0.00 2.69
2271 5707 6.023357 TGATCATTTTTGGAATCAGCGAAA 57.977 33.333 0.00 0.00 0.00 3.46
2307 5743 8.876275 TGAGTAAACTATTTTGTAAGTCACGT 57.124 30.769 0.00 0.00 0.00 4.49
2325 5761 8.821147 AGTCACGTACAGTTTTTAATACATGA 57.179 30.769 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.608717 CTCCAACCTCCTCACCTCCG 61.609 65.000 0.00 0.00 0.00 4.63
1 2 1.904990 GCTCCAACCTCCTCACCTCC 61.905 65.000 0.00 0.00 0.00 4.30
2 3 1.599576 GCTCCAACCTCCTCACCTC 59.400 63.158 0.00 0.00 0.00 3.85
3 4 2.286523 CGCTCCAACCTCCTCACCT 61.287 63.158 0.00 0.00 0.00 4.00
4 5 2.266055 CGCTCCAACCTCCTCACC 59.734 66.667 0.00 0.00 0.00 4.02
5 6 2.435059 GCGCTCCAACCTCCTCAC 60.435 66.667 0.00 0.00 0.00 3.51
6 7 4.069232 CGCGCTCCAACCTCCTCA 62.069 66.667 5.56 0.00 0.00 3.86
70 71 4.081030 CAACACCGCGAGCTGCAG 62.081 66.667 8.23 10.11 46.97 4.41
71 72 4.600576 TCAACACCGCGAGCTGCA 62.601 61.111 8.23 0.00 46.97 4.41
72 73 4.077188 GTCAACACCGCGAGCTGC 62.077 66.667 8.23 0.00 41.47 5.25
73 74 2.661537 TGTCAACACCGCGAGCTG 60.662 61.111 8.23 1.01 0.00 4.24
74 75 2.661866 GTGTCAACACCGCGAGCT 60.662 61.111 8.23 0.00 40.85 4.09
82 83 2.032030 CCTTCATTGTCGGTGTCAACAC 60.032 50.000 4.67 4.67 45.72 3.32
83 84 2.158885 TCCTTCATTGTCGGTGTCAACA 60.159 45.455 0.00 0.00 0.00 3.33
84 85 2.480419 CTCCTTCATTGTCGGTGTCAAC 59.520 50.000 0.00 0.00 0.00 3.18
85 86 2.549992 CCTCCTTCATTGTCGGTGTCAA 60.550 50.000 0.00 0.00 0.00 3.18
86 87 1.001974 CCTCCTTCATTGTCGGTGTCA 59.998 52.381 0.00 0.00 0.00 3.58
87 88 1.002087 ACCTCCTTCATTGTCGGTGTC 59.998 52.381 0.00 0.00 0.00 3.67
88 89 1.056660 ACCTCCTTCATTGTCGGTGT 58.943 50.000 0.00 0.00 0.00 4.16
89 90 1.806542 CAACCTCCTTCATTGTCGGTG 59.193 52.381 0.00 0.00 0.00 4.94
90 91 1.882352 GCAACCTCCTTCATTGTCGGT 60.882 52.381 0.00 0.00 0.00 4.69
91 92 0.804989 GCAACCTCCTTCATTGTCGG 59.195 55.000 0.00 0.00 0.00 4.79
92 93 1.466167 CTGCAACCTCCTTCATTGTCG 59.534 52.381 0.00 0.00 0.00 4.35
93 94 1.815003 CCTGCAACCTCCTTCATTGTC 59.185 52.381 0.00 0.00 0.00 3.18
94 95 1.915141 CCTGCAACCTCCTTCATTGT 58.085 50.000 0.00 0.00 0.00 2.71
95 96 0.529378 GCCTGCAACCTCCTTCATTG 59.471 55.000 0.00 0.00 0.00 2.82
96 97 0.962356 CGCCTGCAACCTCCTTCATT 60.962 55.000 0.00 0.00 0.00 2.57
97 98 1.377725 CGCCTGCAACCTCCTTCAT 60.378 57.895 0.00 0.00 0.00 2.57
98 99 2.032528 CGCCTGCAACCTCCTTCA 59.967 61.111 0.00 0.00 0.00 3.02
99 100 3.435186 GCGCCTGCAACCTCCTTC 61.435 66.667 0.00 0.00 42.15 3.46
105 106 4.849310 TATCCGGCGCCTGCAACC 62.849 66.667 26.68 0.00 45.35 3.77
106 107 3.573491 GTATCCGGCGCCTGCAAC 61.573 66.667 26.68 15.11 45.35 4.17
107 108 4.849310 GGTATCCGGCGCCTGCAA 62.849 66.667 26.68 7.16 45.35 4.08
126 127 4.201679 CCATGCACATGCCTGCGG 62.202 66.667 5.06 0.00 40.31 5.69
127 128 3.135457 TCCATGCACATGCCTGCG 61.135 61.111 5.06 0.00 40.31 5.18
128 129 2.493030 GTCCATGCACATGCCTGC 59.507 61.111 5.06 1.45 41.18 4.85
129 130 1.712018 CTCGTCCATGCACATGCCTG 61.712 60.000 5.06 1.59 41.18 4.85
130 131 1.450848 CTCGTCCATGCACATGCCT 60.451 57.895 5.06 0.00 41.18 4.75
131 132 1.434622 CTCTCGTCCATGCACATGCC 61.435 60.000 5.06 0.00 41.18 4.40
132 133 1.434622 CCTCTCGTCCATGCACATGC 61.435 60.000 5.06 0.00 37.49 4.06
133 134 0.812811 CCCTCTCGTCCATGCACATG 60.813 60.000 3.56 3.56 38.51 3.21
134 135 1.524002 CCCTCTCGTCCATGCACAT 59.476 57.895 0.00 0.00 0.00 3.21
135 136 2.981302 CCCTCTCGTCCATGCACA 59.019 61.111 0.00 0.00 0.00 4.57
136 137 2.512515 GCCCTCTCGTCCATGCAC 60.513 66.667 0.00 0.00 0.00 4.57
137 138 4.147449 CGCCCTCTCGTCCATGCA 62.147 66.667 0.00 0.00 0.00 3.96
138 139 4.899239 CCGCCCTCTCGTCCATGC 62.899 72.222 0.00 0.00 0.00 4.06
139 140 4.899239 GCCGCCCTCTCGTCCATG 62.899 72.222 0.00 0.00 0.00 3.66
145 146 4.856607 GAAGTCGCCGCCCTCTCG 62.857 72.222 0.00 0.00 0.00 4.04
146 147 2.962697 GATGAAGTCGCCGCCCTCTC 62.963 65.000 0.00 0.00 0.00 3.20
147 148 3.077556 ATGAAGTCGCCGCCCTCT 61.078 61.111 0.00 0.00 0.00 3.69
148 149 2.586357 GATGAAGTCGCCGCCCTC 60.586 66.667 0.00 0.00 0.00 4.30
149 150 3.376935 CTGATGAAGTCGCCGCCCT 62.377 63.158 0.00 0.00 0.00 5.19
150 151 2.892425 CTGATGAAGTCGCCGCCC 60.892 66.667 0.00 0.00 0.00 6.13
151 152 3.567797 GCTGATGAAGTCGCCGCC 61.568 66.667 0.00 0.00 0.00 6.13
152 153 1.709147 ATTGCTGATGAAGTCGCCGC 61.709 55.000 0.00 0.00 0.00 6.53
153 154 0.027194 CATTGCTGATGAAGTCGCCG 59.973 55.000 0.00 0.00 38.03 6.46
154 155 1.063174 GACATTGCTGATGAAGTCGCC 59.937 52.381 7.50 0.00 39.15 5.54
155 156 1.063174 GGACATTGCTGATGAAGTCGC 59.937 52.381 7.50 0.00 39.15 5.19
156 157 1.325640 CGGACATTGCTGATGAAGTCG 59.674 52.381 7.50 3.01 39.15 4.18
157 158 2.349886 GTCGGACATTGCTGATGAAGTC 59.650 50.000 2.62 0.00 39.15 3.01
158 159 2.289631 TGTCGGACATTGCTGATGAAGT 60.290 45.455 6.76 0.00 39.15 3.01
159 160 2.349590 TGTCGGACATTGCTGATGAAG 58.650 47.619 6.76 0.24 39.15 3.02
160 161 2.349590 CTGTCGGACATTGCTGATGAA 58.650 47.619 11.86 0.00 39.15 2.57
161 162 2.008543 GCTGTCGGACATTGCTGATGA 61.009 52.381 11.86 0.00 39.15 2.92
162 163 0.376152 GCTGTCGGACATTGCTGATG 59.624 55.000 11.86 0.00 41.71 3.07
163 164 0.036105 TGCTGTCGGACATTGCTGAT 60.036 50.000 19.16 0.00 0.00 2.90
164 165 0.036105 ATGCTGTCGGACATTGCTGA 60.036 50.000 19.16 4.87 0.00 4.26
165 166 0.098200 CATGCTGTCGGACATTGCTG 59.902 55.000 19.16 12.64 0.00 4.41
166 167 0.321919 ACATGCTGTCGGACATTGCT 60.322 50.000 19.16 6.32 0.00 3.91
167 168 1.062587 GTACATGCTGTCGGACATTGC 59.937 52.381 11.86 12.90 0.00 3.56
168 169 2.345876 TGTACATGCTGTCGGACATTG 58.654 47.619 11.86 11.86 0.00 2.82
169 170 2.621338 CTGTACATGCTGTCGGACATT 58.379 47.619 11.86 0.00 0.00 2.71
170 171 1.740380 GCTGTACATGCTGTCGGACAT 60.740 52.381 11.86 0.00 0.00 3.06
171 172 0.389817 GCTGTACATGCTGTCGGACA 60.390 55.000 10.88 10.88 0.00 4.02
172 173 0.108615 AGCTGTACATGCTGTCGGAC 60.109 55.000 15.98 0.00 39.56 4.79
173 174 2.276869 AGCTGTACATGCTGTCGGA 58.723 52.632 15.98 0.00 39.56 4.55
174 175 4.919653 AGCTGTACATGCTGTCGG 57.080 55.556 15.98 0.00 39.56 4.79
179 180 1.153489 CTCCGCAGCTGTACATGCT 60.153 57.895 16.64 14.67 40.34 3.79
180 181 2.176273 CCTCCGCAGCTGTACATGC 61.176 63.158 16.64 10.78 39.09 4.06
181 182 2.176273 GCCTCCGCAGCTGTACATG 61.176 63.158 16.64 2.99 34.03 3.21
182 183 2.187946 GCCTCCGCAGCTGTACAT 59.812 61.111 16.64 0.00 34.03 2.29
183 184 2.997315 AGCCTCCGCAGCTGTACA 60.997 61.111 16.64 0.00 39.69 2.90
184 185 2.202810 GAGCCTCCGCAGCTGTAC 60.203 66.667 16.64 0.00 41.75 2.90
185 186 2.282783 TTGAGCCTCCGCAGCTGTA 61.283 57.895 16.64 0.23 41.75 2.74
186 187 3.630013 TTGAGCCTCCGCAGCTGT 61.630 61.111 16.64 0.00 41.75 4.40
187 188 3.123620 GTTGAGCCTCCGCAGCTG 61.124 66.667 10.11 10.11 41.75 4.24
188 189 2.888447 AAGTTGAGCCTCCGCAGCT 61.888 57.895 0.00 0.00 45.23 4.24
189 190 2.359230 AAGTTGAGCCTCCGCAGC 60.359 61.111 0.00 0.00 37.52 5.25
190 191 2.684843 GCAAGTTGAGCCTCCGCAG 61.685 63.158 7.16 0.00 37.52 5.18
191 192 2.669569 GCAAGTTGAGCCTCCGCA 60.670 61.111 7.16 0.00 37.52 5.69
192 193 2.359230 AGCAAGTTGAGCCTCCGC 60.359 61.111 7.16 0.00 0.00 5.54
193 194 2.684843 GCAGCAAGTTGAGCCTCCG 61.685 63.158 7.16 0.00 0.00 4.63
194 195 1.303155 AGCAGCAAGTTGAGCCTCC 60.303 57.895 7.16 0.00 0.00 4.30
195 196 0.604780 TGAGCAGCAAGTTGAGCCTC 60.605 55.000 7.16 8.37 0.00 4.70
196 197 0.888285 GTGAGCAGCAAGTTGAGCCT 60.888 55.000 7.16 0.00 0.00 4.58
197 198 0.888285 AGTGAGCAGCAAGTTGAGCC 60.888 55.000 7.16 4.95 0.00 4.70
198 199 1.462670 GTAGTGAGCAGCAAGTTGAGC 59.537 52.381 7.16 9.78 0.00 4.26
199 200 2.735663 CTGTAGTGAGCAGCAAGTTGAG 59.264 50.000 7.16 0.00 0.00 3.02
200 201 2.548707 CCTGTAGTGAGCAGCAAGTTGA 60.549 50.000 7.16 0.00 32.93 3.18
201 202 1.802960 CCTGTAGTGAGCAGCAAGTTG 59.197 52.381 0.00 0.00 32.93 3.16
202 203 1.271054 CCCTGTAGTGAGCAGCAAGTT 60.271 52.381 0.00 0.00 32.93 2.66
203 204 0.322975 CCCTGTAGTGAGCAGCAAGT 59.677 55.000 0.00 0.00 32.93 3.16
204 205 0.610174 TCCCTGTAGTGAGCAGCAAG 59.390 55.000 0.00 0.00 32.93 4.01
205 206 0.610174 CTCCCTGTAGTGAGCAGCAA 59.390 55.000 0.00 0.00 32.93 3.91
206 207 0.251787 TCTCCCTGTAGTGAGCAGCA 60.252 55.000 0.00 0.00 32.93 4.41
207 208 1.118838 ATCTCCCTGTAGTGAGCAGC 58.881 55.000 0.00 0.00 32.93 5.25
208 209 1.202510 GCATCTCCCTGTAGTGAGCAG 60.203 57.143 0.00 0.00 0.00 4.24
209 210 0.826715 GCATCTCCCTGTAGTGAGCA 59.173 55.000 0.00 0.00 0.00 4.26
210 211 1.068434 GAGCATCTCCCTGTAGTGAGC 59.932 57.143 0.00 0.00 0.00 4.26
211 212 2.382882 TGAGCATCTCCCTGTAGTGAG 58.617 52.381 0.00 0.00 34.92 3.51
212 213 2.497675 GTTGAGCATCTCCCTGTAGTGA 59.502 50.000 0.00 0.00 34.92 3.41
213 214 2.234661 TGTTGAGCATCTCCCTGTAGTG 59.765 50.000 0.00 0.00 34.92 2.74
214 215 2.234908 GTGTTGAGCATCTCCCTGTAGT 59.765 50.000 0.00 0.00 34.92 2.73
215 216 2.736719 CGTGTTGAGCATCTCCCTGTAG 60.737 54.545 0.00 0.00 34.92 2.74
216 217 1.204704 CGTGTTGAGCATCTCCCTGTA 59.795 52.381 0.00 0.00 34.92 2.74
217 218 0.036952 CGTGTTGAGCATCTCCCTGT 60.037 55.000 0.00 0.00 34.92 4.00
218 219 1.364626 GCGTGTTGAGCATCTCCCTG 61.365 60.000 0.00 0.00 34.92 4.45
219 220 1.078848 GCGTGTTGAGCATCTCCCT 60.079 57.895 0.00 0.00 34.92 4.20
220 221 2.456119 CGCGTGTTGAGCATCTCCC 61.456 63.158 0.00 0.00 34.92 4.30
221 222 2.456119 CCGCGTGTTGAGCATCTCC 61.456 63.158 4.92 0.00 34.92 3.71
222 223 1.416813 CTCCGCGTGTTGAGCATCTC 61.417 60.000 4.92 0.00 34.92 2.75
223 224 1.446792 CTCCGCGTGTTGAGCATCT 60.447 57.895 4.92 0.00 34.92 2.90
224 225 3.084579 CTCCGCGTGTTGAGCATC 58.915 61.111 4.92 0.00 34.19 3.91
228 229 1.446792 ATCTGCTCCGCGTGTTGAG 60.447 57.895 4.92 5.46 0.00 3.02
229 230 1.737735 CATCTGCTCCGCGTGTTGA 60.738 57.895 4.92 0.00 0.00 3.18
230 231 0.735978 TACATCTGCTCCGCGTGTTG 60.736 55.000 4.92 0.00 0.00 3.33
231 232 0.458543 CTACATCTGCTCCGCGTGTT 60.459 55.000 4.92 0.00 0.00 3.32
232 233 1.139734 CTACATCTGCTCCGCGTGT 59.860 57.895 4.92 3.10 0.00 4.49
233 234 0.031314 ATCTACATCTGCTCCGCGTG 59.969 55.000 4.92 0.00 0.00 5.34
234 235 0.312416 GATCTACATCTGCTCCGCGT 59.688 55.000 4.92 0.00 0.00 6.01
235 236 0.312102 TGATCTACATCTGCTCCGCG 59.688 55.000 0.00 0.00 0.00 6.46
236 237 1.934399 GCTGATCTACATCTGCTCCGC 60.934 57.143 3.15 0.00 45.84 5.54
237 238 1.665448 CGCTGATCTACATCTGCTCCG 60.665 57.143 7.94 0.00 46.68 4.63
238 239 1.339610 ACGCTGATCTACATCTGCTCC 59.660 52.381 7.94 0.00 46.68 4.70
239 240 2.223688 ACACGCTGATCTACATCTGCTC 60.224 50.000 7.94 0.00 46.68 4.26
240 241 1.753649 ACACGCTGATCTACATCTGCT 59.246 47.619 7.94 0.00 46.68 4.24
241 242 1.857217 CACACGCTGATCTACATCTGC 59.143 52.381 0.00 0.59 45.85 4.26
242 243 2.159184 ACCACACGCTGATCTACATCTG 60.159 50.000 0.00 0.00 0.00 2.90
243 244 2.103373 ACCACACGCTGATCTACATCT 58.897 47.619 0.00 0.00 0.00 2.90
244 245 2.586258 ACCACACGCTGATCTACATC 57.414 50.000 0.00 0.00 0.00 3.06
245 246 2.233676 TGAACCACACGCTGATCTACAT 59.766 45.455 0.00 0.00 0.00 2.29
246 247 1.616374 TGAACCACACGCTGATCTACA 59.384 47.619 0.00 0.00 0.00 2.74
247 248 2.363788 TGAACCACACGCTGATCTAC 57.636 50.000 0.00 0.00 0.00 2.59
248 249 3.610040 AATGAACCACACGCTGATCTA 57.390 42.857 0.00 0.00 0.00 1.98
249 250 2.479566 AATGAACCACACGCTGATCT 57.520 45.000 0.00 0.00 0.00 2.75
250 251 3.485877 GCTAAATGAACCACACGCTGATC 60.486 47.826 0.00 0.00 0.00 2.92
251 252 2.420022 GCTAAATGAACCACACGCTGAT 59.580 45.455 0.00 0.00 0.00 2.90
252 253 1.804151 GCTAAATGAACCACACGCTGA 59.196 47.619 0.00 0.00 0.00 4.26
253 254 1.806542 AGCTAAATGAACCACACGCTG 59.193 47.619 0.00 0.00 0.00 5.18
254 255 2.185004 AGCTAAATGAACCACACGCT 57.815 45.000 0.00 0.00 0.00 5.07
255 256 3.000727 ACTAGCTAAATGAACCACACGC 58.999 45.455 0.00 0.00 0.00 5.34
256 257 3.370978 CCACTAGCTAAATGAACCACACG 59.629 47.826 6.29 0.00 0.00 4.49
257 258 4.324267 ACCACTAGCTAAATGAACCACAC 58.676 43.478 6.29 0.00 0.00 3.82
258 259 4.286032 AGACCACTAGCTAAATGAACCACA 59.714 41.667 6.29 0.00 0.00 4.17
259 260 4.833390 AGACCACTAGCTAAATGAACCAC 58.167 43.478 6.29 0.00 0.00 4.16
260 261 4.381612 CGAGACCACTAGCTAAATGAACCA 60.382 45.833 6.29 0.00 0.00 3.67
261 262 4.113354 CGAGACCACTAGCTAAATGAACC 58.887 47.826 6.29 0.00 0.00 3.62
262 263 3.552294 GCGAGACCACTAGCTAAATGAAC 59.448 47.826 6.29 1.36 40.62 3.18
263 264 3.782046 GCGAGACCACTAGCTAAATGAA 58.218 45.455 6.29 0.00 40.62 2.57
264 265 3.438297 GCGAGACCACTAGCTAAATGA 57.562 47.619 6.29 0.00 40.62 2.57
271 272 1.071605 CAAACAGCGAGACCACTAGC 58.928 55.000 0.00 0.00 43.32 3.42
272 273 2.440539 ACAAACAGCGAGACCACTAG 57.559 50.000 0.00 0.00 0.00 2.57
273 274 2.101750 TGAACAAACAGCGAGACCACTA 59.898 45.455 0.00 0.00 0.00 2.74
274 275 1.134521 TGAACAAACAGCGAGACCACT 60.135 47.619 0.00 0.00 0.00 4.00
275 276 1.003866 GTGAACAAACAGCGAGACCAC 60.004 52.381 0.00 0.00 0.00 4.16
276 277 1.134521 AGTGAACAAACAGCGAGACCA 60.135 47.619 0.00 0.00 0.00 4.02
277 278 1.261619 CAGTGAACAAACAGCGAGACC 59.738 52.381 0.00 0.00 0.00 3.85
278 279 1.261619 CCAGTGAACAAACAGCGAGAC 59.738 52.381 0.00 0.00 0.00 3.36
279 280 1.138069 TCCAGTGAACAAACAGCGAGA 59.862 47.619 0.00 0.00 0.00 4.04
280 281 1.581934 TCCAGTGAACAAACAGCGAG 58.418 50.000 0.00 0.00 0.00 5.03
281 282 2.254546 ATCCAGTGAACAAACAGCGA 57.745 45.000 0.00 0.00 0.00 4.93
282 283 3.745975 TCTAATCCAGTGAACAAACAGCG 59.254 43.478 0.00 0.00 0.00 5.18
283 284 5.886960 ATCTAATCCAGTGAACAAACAGC 57.113 39.130 0.00 0.00 0.00 4.40
284 285 7.010923 GCTCTATCTAATCCAGTGAACAAACAG 59.989 40.741 0.00 0.00 0.00 3.16
285 286 6.818644 GCTCTATCTAATCCAGTGAACAAACA 59.181 38.462 0.00 0.00 0.00 2.83
286 287 6.818644 TGCTCTATCTAATCCAGTGAACAAAC 59.181 38.462 0.00 0.00 0.00 2.93
287 288 6.946340 TGCTCTATCTAATCCAGTGAACAAA 58.054 36.000 0.00 0.00 0.00 2.83
288 289 6.544928 TGCTCTATCTAATCCAGTGAACAA 57.455 37.500 0.00 0.00 0.00 2.83
289 290 5.452496 GCTGCTCTATCTAATCCAGTGAACA 60.452 44.000 0.00 0.00 0.00 3.18
290 291 4.987912 GCTGCTCTATCTAATCCAGTGAAC 59.012 45.833 0.00 0.00 0.00 3.18
291 292 4.651045 TGCTGCTCTATCTAATCCAGTGAA 59.349 41.667 0.00 0.00 0.00 3.18
292 293 4.218312 TGCTGCTCTATCTAATCCAGTGA 58.782 43.478 0.00 0.00 0.00 3.41
293 294 4.280425 TCTGCTGCTCTATCTAATCCAGTG 59.720 45.833 0.00 0.00 0.00 3.66
294 295 4.478203 TCTGCTGCTCTATCTAATCCAGT 58.522 43.478 0.00 0.00 0.00 4.00
295 296 5.010922 ACTTCTGCTGCTCTATCTAATCCAG 59.989 44.000 0.00 0.00 0.00 3.86
296 297 4.898265 ACTTCTGCTGCTCTATCTAATCCA 59.102 41.667 0.00 0.00 0.00 3.41
297 298 5.467035 ACTTCTGCTGCTCTATCTAATCC 57.533 43.478 0.00 0.00 0.00 3.01
298 299 6.200665 CACAACTTCTGCTGCTCTATCTAATC 59.799 42.308 0.00 0.00 0.00 1.75
299 300 6.047870 CACAACTTCTGCTGCTCTATCTAAT 58.952 40.000 0.00 0.00 0.00 1.73
300 301 5.185828 TCACAACTTCTGCTGCTCTATCTAA 59.814 40.000 0.00 0.00 0.00 2.10
301 302 4.706962 TCACAACTTCTGCTGCTCTATCTA 59.293 41.667 0.00 0.00 0.00 1.98
302 303 3.513119 TCACAACTTCTGCTGCTCTATCT 59.487 43.478 0.00 0.00 0.00 1.98
303 304 3.854666 TCACAACTTCTGCTGCTCTATC 58.145 45.455 0.00 0.00 0.00 2.08
304 305 3.369261 CCTCACAACTTCTGCTGCTCTAT 60.369 47.826 0.00 0.00 0.00 1.98
305 306 2.028658 CCTCACAACTTCTGCTGCTCTA 60.029 50.000 0.00 0.00 0.00 2.43
306 307 1.270732 CCTCACAACTTCTGCTGCTCT 60.271 52.381 0.00 0.00 0.00 4.09
307 308 1.155042 CCTCACAACTTCTGCTGCTC 58.845 55.000 0.00 0.00 0.00 4.26
308 309 0.888285 GCCTCACAACTTCTGCTGCT 60.888 55.000 0.00 0.00 0.00 4.24
309 310 1.578423 GCCTCACAACTTCTGCTGC 59.422 57.895 0.00 0.00 0.00 5.25
310 311 1.572085 CCGCCTCACAACTTCTGCTG 61.572 60.000 0.00 0.00 0.00 4.41
311 312 1.302033 CCGCCTCACAACTTCTGCT 60.302 57.895 0.00 0.00 0.00 4.24
312 313 2.328099 CCCGCCTCACAACTTCTGC 61.328 63.158 0.00 0.00 0.00 4.26
313 314 1.672356 CCCCGCCTCACAACTTCTG 60.672 63.158 0.00 0.00 0.00 3.02
314 315 2.750350 CCCCGCCTCACAACTTCT 59.250 61.111 0.00 0.00 0.00 2.85
315 316 2.359975 CCCCCGCCTCACAACTTC 60.360 66.667 0.00 0.00 0.00 3.01
316 317 2.852075 TCCCCCGCCTCACAACTT 60.852 61.111 0.00 0.00 0.00 2.66
317 318 3.322466 CTCCCCCGCCTCACAACT 61.322 66.667 0.00 0.00 0.00 3.16
318 319 4.410400 CCTCCCCCGCCTCACAAC 62.410 72.222 0.00 0.00 0.00 3.32
323 324 4.153330 TAGTCCCTCCCCCGCCTC 62.153 72.222 0.00 0.00 0.00 4.70
324 325 4.477119 GTAGTCCCTCCCCCGCCT 62.477 72.222 0.00 0.00 0.00 5.52
325 326 4.791069 TGTAGTCCCTCCCCCGCC 62.791 72.222 0.00 0.00 0.00 6.13
326 327 2.446036 ATGTAGTCCCTCCCCCGC 60.446 66.667 0.00 0.00 0.00 6.13
327 328 2.808206 GCATGTAGTCCCTCCCCCG 61.808 68.421 0.00 0.00 0.00 5.73
328 329 1.279025 TTGCATGTAGTCCCTCCCCC 61.279 60.000 0.00 0.00 0.00 5.40
329 330 0.181350 CTTGCATGTAGTCCCTCCCC 59.819 60.000 0.00 0.00 0.00 4.81
330 331 0.181350 CCTTGCATGTAGTCCCTCCC 59.819 60.000 0.00 0.00 0.00 4.30
331 332 1.139853 CTCCTTGCATGTAGTCCCTCC 59.860 57.143 0.00 0.00 0.00 4.30
332 333 1.139853 CCTCCTTGCATGTAGTCCCTC 59.860 57.143 0.00 0.00 0.00 4.30
333 334 1.207791 CCTCCTTGCATGTAGTCCCT 58.792 55.000 0.00 0.00 0.00 4.20
334 335 1.134371 GTCCTCCTTGCATGTAGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
335 336 1.834263 AGTCCTCCTTGCATGTAGTCC 59.166 52.381 0.00 0.00 0.00 3.85
336 337 3.068873 CCTAGTCCTCCTTGCATGTAGTC 59.931 52.174 0.00 0.00 0.00 2.59
337 338 3.034635 CCTAGTCCTCCTTGCATGTAGT 58.965 50.000 0.00 0.00 0.00 2.73
338 339 2.224161 GCCTAGTCCTCCTTGCATGTAG 60.224 54.545 0.00 0.00 0.00 2.74
339 340 1.762957 GCCTAGTCCTCCTTGCATGTA 59.237 52.381 0.00 0.00 0.00 2.29
340 341 0.543749 GCCTAGTCCTCCTTGCATGT 59.456 55.000 0.00 0.00 0.00 3.21
341 342 0.531532 CGCCTAGTCCTCCTTGCATG 60.532 60.000 0.00 0.00 0.00 4.06
342 343 1.690219 CCGCCTAGTCCTCCTTGCAT 61.690 60.000 0.00 0.00 0.00 3.96
343 344 2.359169 CCGCCTAGTCCTCCTTGCA 61.359 63.158 0.00 0.00 0.00 4.08
344 345 2.359967 ACCGCCTAGTCCTCCTTGC 61.360 63.158 0.00 0.00 0.00 4.01
345 346 1.517832 CACCGCCTAGTCCTCCTTG 59.482 63.158 0.00 0.00 0.00 3.61
346 347 1.686110 CCACCGCCTAGTCCTCCTT 60.686 63.158 0.00 0.00 0.00 3.36
347 348 2.042843 CCACCGCCTAGTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
348 349 3.851128 GCCACCGCCTAGTCCTCC 61.851 72.222 0.00 0.00 0.00 4.30
390 391 4.017877 GTGCTGGCACACTCGCAC 62.018 66.667 19.16 12.18 45.53 5.34
405 406 4.827087 AGATGAGCTGCCGCGGTG 62.827 66.667 28.70 20.65 42.32 4.94
406 407 3.612247 AAAGATGAGCTGCCGCGGT 62.612 57.895 28.70 6.29 42.32 5.68
407 408 2.315038 GAAAAGATGAGCTGCCGCGG 62.315 60.000 24.05 24.05 42.32 6.46
408 409 1.061570 GAAAAGATGAGCTGCCGCG 59.938 57.895 0.00 0.00 42.32 6.46
409 410 0.179179 GTGAAAAGATGAGCTGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
410 411 0.449388 GGTGAAAAGATGAGCTGCCG 59.551 55.000 0.00 0.00 0.00 5.69
411 412 1.471684 CTGGTGAAAAGATGAGCTGCC 59.528 52.381 0.00 0.00 0.00 4.85
412 413 2.419324 CTCTGGTGAAAAGATGAGCTGC 59.581 50.000 0.00 0.00 0.00 5.25
413 414 3.935315 TCTCTGGTGAAAAGATGAGCTG 58.065 45.455 0.00 0.00 0.00 4.24
414 415 4.630644 TTCTCTGGTGAAAAGATGAGCT 57.369 40.909 0.00 0.00 0.00 4.09
415 416 4.083057 GGTTTCTCTGGTGAAAAGATGAGC 60.083 45.833 0.39 0.00 37.63 4.26
416 417 5.180868 CAGGTTTCTCTGGTGAAAAGATGAG 59.819 44.000 0.39 0.00 37.63 2.90
417 418 5.065914 CAGGTTTCTCTGGTGAAAAGATGA 58.934 41.667 0.39 0.00 37.63 2.92
418 419 5.049129 GTCAGGTTTCTCTGGTGAAAAGATG 60.049 44.000 0.39 1.44 37.63 2.90
419 420 5.066593 GTCAGGTTTCTCTGGTGAAAAGAT 58.933 41.667 0.39 0.00 37.63 2.40
420 421 4.451900 GTCAGGTTTCTCTGGTGAAAAGA 58.548 43.478 0.39 0.00 37.63 2.52
421 422 3.248602 CGTCAGGTTTCTCTGGTGAAAAG 59.751 47.826 0.39 0.00 37.63 2.27
422 423 3.118555 TCGTCAGGTTTCTCTGGTGAAAA 60.119 43.478 0.39 0.00 37.63 2.29
423 424 2.432874 TCGTCAGGTTTCTCTGGTGAAA 59.567 45.455 0.00 0.00 35.58 2.69
424 425 2.035961 CTCGTCAGGTTTCTCTGGTGAA 59.964 50.000 0.00 0.00 35.58 3.18
425 426 1.613925 CTCGTCAGGTTTCTCTGGTGA 59.386 52.381 0.00 0.00 35.58 4.02
426 427 1.337260 CCTCGTCAGGTTTCTCTGGTG 60.337 57.143 0.00 0.00 34.60 4.17
427 428 0.969894 CCTCGTCAGGTTTCTCTGGT 59.030 55.000 0.00 0.00 34.60 4.00
428 429 0.247736 CCCTCGTCAGGTTTCTCTGG 59.752 60.000 0.00 0.00 38.30 3.86
429 430 1.257743 TCCCTCGTCAGGTTTCTCTG 58.742 55.000 0.00 0.00 38.30 3.35
430 431 1.896465 CTTCCCTCGTCAGGTTTCTCT 59.104 52.381 0.00 0.00 38.30 3.10
431 432 1.619332 ACTTCCCTCGTCAGGTTTCTC 59.381 52.381 0.00 0.00 38.30 2.87
432 433 1.344763 CACTTCCCTCGTCAGGTTTCT 59.655 52.381 0.00 0.00 38.30 2.52
433 434 1.608283 CCACTTCCCTCGTCAGGTTTC 60.608 57.143 0.00 0.00 38.30 2.78
434 435 0.396811 CCACTTCCCTCGTCAGGTTT 59.603 55.000 0.00 0.00 38.30 3.27
435 436 2.058675 CCACTTCCCTCGTCAGGTT 58.941 57.895 0.00 0.00 38.30 3.50
436 437 2.584391 GCCACTTCCCTCGTCAGGT 61.584 63.158 0.00 0.00 38.30 4.00
437 438 2.266055 GCCACTTCCCTCGTCAGG 59.734 66.667 0.00 0.00 39.98 3.86
438 439 1.079543 CAGCCACTTCCCTCGTCAG 60.080 63.158 0.00 0.00 0.00 3.51
439 440 2.583441 CCAGCCACTTCCCTCGTCA 61.583 63.158 0.00 0.00 0.00 4.35
440 441 2.266055 CCAGCCACTTCCCTCGTC 59.734 66.667 0.00 0.00 0.00 4.20
441 442 2.526873 ACCAGCCACTTCCCTCGT 60.527 61.111 0.00 0.00 0.00 4.18
442 443 2.046892 CACCAGCCACTTCCCTCG 60.047 66.667 0.00 0.00 0.00 4.63
443 444 2.352805 CCACCAGCCACTTCCCTC 59.647 66.667 0.00 0.00 0.00 4.30
444 445 2.706341 TACCCACCAGCCACTTCCCT 62.706 60.000 0.00 0.00 0.00 4.20
445 446 1.785353 TTACCCACCAGCCACTTCCC 61.785 60.000 0.00 0.00 0.00 3.97
446 447 0.322546 CTTACCCACCAGCCACTTCC 60.323 60.000 0.00 0.00 0.00 3.46
447 448 0.690762 TCTTACCCACCAGCCACTTC 59.309 55.000 0.00 0.00 0.00 3.01
448 449 1.004745 CATCTTACCCACCAGCCACTT 59.995 52.381 0.00 0.00 0.00 3.16
449 450 0.620556 CATCTTACCCACCAGCCACT 59.379 55.000 0.00 0.00 0.00 4.00
450 451 0.394352 CCATCTTACCCACCAGCCAC 60.394 60.000 0.00 0.00 0.00 5.01
451 452 1.570857 CCCATCTTACCCACCAGCCA 61.571 60.000 0.00 0.00 0.00 4.75
452 453 1.227383 CCCATCTTACCCACCAGCC 59.773 63.158 0.00 0.00 0.00 4.85
453 454 1.227383 CCCCATCTTACCCACCAGC 59.773 63.158 0.00 0.00 0.00 4.85
454 455 0.546598 GACCCCATCTTACCCACCAG 59.453 60.000 0.00 0.00 0.00 4.00
455 456 0.917333 GGACCCCATCTTACCCACCA 60.917 60.000 0.00 0.00 0.00 4.17
456 457 1.642513 GGGACCCCATCTTACCCACC 61.643 65.000 0.00 0.00 40.20 4.61
457 458 0.917333 TGGGACCCCATCTTACCCAC 60.917 60.000 8.45 0.00 44.50 4.61
458 459 0.178828 TTGGGACCCCATCTTACCCA 60.179 55.000 8.45 0.00 46.64 4.51
459 460 1.133482 CATTGGGACCCCATCTTACCC 60.133 57.143 8.45 0.00 46.64 3.69
460 461 1.850345 TCATTGGGACCCCATCTTACC 59.150 52.381 8.45 0.00 46.64 2.85
461 462 2.509964 ACTCATTGGGACCCCATCTTAC 59.490 50.000 8.45 0.00 46.64 2.34
462 463 2.858644 ACTCATTGGGACCCCATCTTA 58.141 47.619 8.45 0.00 46.64 2.10
463 464 1.686236 ACTCATTGGGACCCCATCTT 58.314 50.000 8.45 0.00 46.64 2.40
464 465 1.686236 AACTCATTGGGACCCCATCT 58.314 50.000 8.45 0.00 46.64 2.90
465 466 3.662759 TTAACTCATTGGGACCCCATC 57.337 47.619 8.45 0.00 46.64 3.51
466 467 4.106341 CCTATTAACTCATTGGGACCCCAT 59.894 45.833 8.45 0.00 46.64 4.00
467 468 3.461831 CCTATTAACTCATTGGGACCCCA 59.538 47.826 8.45 3.10 45.63 4.96
468 469 3.181433 CCCTATTAACTCATTGGGACCCC 60.181 52.174 8.45 2.69 40.65 4.95
469 470 3.750922 GCCCTATTAACTCATTGGGACCC 60.751 52.174 2.45 2.45 40.65 4.46
470 471 3.138468 AGCCCTATTAACTCATTGGGACC 59.862 47.826 4.57 0.00 40.65 4.46
471 472 4.439253 AGCCCTATTAACTCATTGGGAC 57.561 45.455 4.57 0.00 40.65 4.46
472 473 4.041691 GCTAGCCCTATTAACTCATTGGGA 59.958 45.833 2.29 0.00 40.65 4.37
473 474 4.327680 GCTAGCCCTATTAACTCATTGGG 58.672 47.826 2.29 0.00 41.01 4.12
474 475 4.327680 GGCTAGCCCTATTAACTCATTGG 58.672 47.826 24.19 0.00 0.00 3.16
506 507 4.754114 CGGATTTTCATTGGGCAAGAAAAA 59.246 37.500 0.00 0.00 42.43 1.94
507 508 4.039730 TCGGATTTTCATTGGGCAAGAAAA 59.960 37.500 0.00 0.00 43.05 2.29
508 509 3.576118 TCGGATTTTCATTGGGCAAGAAA 59.424 39.130 0.00 0.00 0.00 2.52
509 510 3.056891 GTCGGATTTTCATTGGGCAAGAA 60.057 43.478 0.00 0.00 0.00 2.52
510 511 2.491693 GTCGGATTTTCATTGGGCAAGA 59.508 45.455 0.00 0.00 0.00 3.02
511 512 2.731968 CGTCGGATTTTCATTGGGCAAG 60.732 50.000 0.00 0.00 0.00 4.01
512 513 1.201181 CGTCGGATTTTCATTGGGCAA 59.799 47.619 0.00 0.00 0.00 4.52
513 514 0.808125 CGTCGGATTTTCATTGGGCA 59.192 50.000 0.00 0.00 0.00 5.36
514 515 0.100503 CCGTCGGATTTTCATTGGGC 59.899 55.000 4.91 0.00 0.00 5.36
515 516 0.100503 GCCGTCGGATTTTCATTGGG 59.899 55.000 17.49 0.00 0.00 4.12
516 517 0.808125 TGCCGTCGGATTTTCATTGG 59.192 50.000 17.49 0.00 0.00 3.16
517 518 2.627863 TTGCCGTCGGATTTTCATTG 57.372 45.000 17.49 0.00 0.00 2.82
518 519 2.094752 CCTTTGCCGTCGGATTTTCATT 60.095 45.455 17.49 0.00 0.00 2.57
519 520 1.472480 CCTTTGCCGTCGGATTTTCAT 59.528 47.619 17.49 0.00 0.00 2.57
520 521 0.878416 CCTTTGCCGTCGGATTTTCA 59.122 50.000 17.49 0.00 0.00 2.69
521 522 1.135774 GTCCTTTGCCGTCGGATTTTC 60.136 52.381 17.49 0.00 0.00 2.29
522 523 0.879090 GTCCTTTGCCGTCGGATTTT 59.121 50.000 17.49 0.00 0.00 1.82
523 524 1.296056 CGTCCTTTGCCGTCGGATTT 61.296 55.000 17.49 0.00 0.00 2.17
612 624 5.300792 ACGTTCCCTGCTTTTCTTGAAATAA 59.699 36.000 0.00 0.00 0.00 1.40
613 625 4.825085 ACGTTCCCTGCTTTTCTTGAAATA 59.175 37.500 0.00 0.00 0.00 1.40
614 626 3.636764 ACGTTCCCTGCTTTTCTTGAAAT 59.363 39.130 0.00 0.00 0.00 2.17
615 627 3.020984 ACGTTCCCTGCTTTTCTTGAAA 58.979 40.909 0.00 0.00 0.00 2.69
616 628 2.357637 CACGTTCCCTGCTTTTCTTGAA 59.642 45.455 0.00 0.00 0.00 2.69
727 752 3.706600 TCCTAACATTTACAAGCCGGT 57.293 42.857 1.90 0.00 0.00 5.28
767 797 1.795286 GGCGATACTGCTTATGCTGAC 59.205 52.381 13.37 4.90 40.66 3.51
887 932 5.379706 AGCTCATGCCTCCTTTTTATAGT 57.620 39.130 0.00 0.00 40.80 2.12
902 950 1.277273 TGTGGTGGAGAGAAGCTCATG 59.723 52.381 0.00 0.00 45.81 3.07
992 1063 3.070115 TGGTTGGCCATTTGCAGAT 57.930 47.368 6.09 0.00 43.89 2.90
993 1064 4.615170 TGGTTGGCCATTTGCAGA 57.385 50.000 6.09 0.00 43.89 4.26
1063 1137 3.771160 GGTGATCCTGGCGTCGGT 61.771 66.667 0.00 0.00 0.00 4.69
1107 1184 2.352421 CGTTGACATGGACGTACTTCCT 60.352 50.000 18.38 0.00 36.51 3.36
1111 1188 3.057104 TGATTCGTTGACATGGACGTACT 60.057 43.478 15.05 4.95 40.03 2.73
1416 1552 4.794439 TAGCGATGCTGCGTGCGT 62.794 61.111 0.00 0.00 46.63 5.24
1417 1553 2.365444 AAATAGCGATGCTGCGTGCG 62.365 55.000 0.00 4.27 46.63 5.34
1418 1554 0.927083 CAAATAGCGATGCTGCGTGC 60.927 55.000 0.00 3.62 40.10 5.34
1419 1555 0.927083 GCAAATAGCGATGCTGCGTG 60.927 55.000 0.00 0.00 40.10 5.34
1434 1571 8.482943 TCCTTTATTCATAGTAGTAGCAGCAAA 58.517 33.333 0.00 0.00 0.00 3.68
1573 1836 1.067060 GCTGGGCCTATTTTTAAGCCG 59.933 52.381 4.53 0.00 46.75 5.52
1588 1851 2.809861 ATCAAGCACGACCAGCTGGG 62.810 60.000 35.42 21.48 42.53 4.45
1593 1857 2.093306 TGGTAATCAAGCACGACCAG 57.907 50.000 0.00 0.00 35.26 4.00
1651 4942 5.106712 ACACAAAGTAATGCACTGGTAATCG 60.107 40.000 0.00 0.00 37.63 3.34
1664 4955 3.432252 CGGAAAGCGAGACACAAAGTAAT 59.568 43.478 0.00 0.00 0.00 1.89
1717 5009 2.979814 TGGTCATATTGTGTCCTCCG 57.020 50.000 0.00 0.00 37.01 4.63
1751 5046 5.032846 AGGACATTCTTCCTGTTGGAGATA 58.967 41.667 0.00 0.00 44.97 1.98
1752 5047 3.848975 AGGACATTCTTCCTGTTGGAGAT 59.151 43.478 0.00 0.00 44.97 2.75
1764 5059 3.399305 AGAACAAGGGGAAGGACATTCTT 59.601 43.478 0.00 0.00 38.07 2.52
1777 5072 6.812879 ATTAAAGACGGTAAAGAACAAGGG 57.187 37.500 0.00 0.00 0.00 3.95
1848 5149 8.888836 ATTCATGGCCATTGAAGATTATGATA 57.111 30.769 24.92 8.78 0.00 2.15
1872 5173 4.821260 TGTCGGTGATGCAGCAAAATATAT 59.179 37.500 6.05 0.00 0.00 0.86
1873 5174 4.195416 TGTCGGTGATGCAGCAAAATATA 58.805 39.130 6.05 0.00 0.00 0.86
1927 5237 8.388319 TGTTGACGAGTTTAAGAAAAATGTTG 57.612 30.769 0.00 0.00 0.00 3.33
2106 5462 7.973944 GCGGATTCAGGAAAATTGTTAAATACT 59.026 33.333 0.00 0.00 0.00 2.12
2107 5463 7.044314 CGCGGATTCAGGAAAATTGTTAAATAC 60.044 37.037 0.00 0.00 0.00 1.89
2109 5465 5.804979 CGCGGATTCAGGAAAATTGTTAAAT 59.195 36.000 0.00 0.00 0.00 1.40
2130 5486 3.246226 CCTCCATTCTAGAAATGTTCGCG 59.754 47.826 9.71 0.00 34.02 5.87
2151 5507 8.055279 TCCATCAAGTATCAAAAGAATGTTCC 57.945 34.615 0.00 0.00 0.00 3.62
2204 5639 8.077386 TCGTCAAATCAAATAAGGGTTTGTTAC 58.923 33.333 0.00 0.00 39.50 2.50
2205 5640 8.167605 TCGTCAAATCAAATAAGGGTTTGTTA 57.832 30.769 0.00 0.00 39.50 2.41
2206 5641 7.045126 TCGTCAAATCAAATAAGGGTTTGTT 57.955 32.000 0.00 0.00 39.50 2.83
2207 5642 6.642707 TCGTCAAATCAAATAAGGGTTTGT 57.357 33.333 0.00 0.00 39.50 2.83
2208 5643 6.920758 TGTTCGTCAAATCAAATAAGGGTTTG 59.079 34.615 0.00 0.00 39.78 2.93
2209 5644 7.045126 TGTTCGTCAAATCAAATAAGGGTTT 57.955 32.000 0.00 0.00 0.00 3.27
2210 5645 6.642707 TGTTCGTCAAATCAAATAAGGGTT 57.357 33.333 0.00 0.00 0.00 4.11
2211 5646 6.834168 ATGTTCGTCAAATCAAATAAGGGT 57.166 33.333 0.00 0.00 0.00 4.34
2212 5647 8.532977 AAAATGTTCGTCAAATCAAATAAGGG 57.467 30.769 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.