Multiple sequence alignment - TraesCS3B01G351400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G351400 chr3B 100.000 4658 0 0 1 4658 561536825 561541482 0.000000e+00 8602.0
1 TraesCS3B01G351400 chr3B 94.240 434 23 2 1 434 89378670 89378239 0.000000e+00 662.0
2 TraesCS3B01G351400 chr3B 93.484 353 16 4 435 786 759571141 759570795 6.910000e-143 518.0
3 TraesCS3B01G351400 chr3B 85.714 350 39 10 443 789 765020130 765019789 4.430000e-95 359.0
4 TraesCS3B01G351400 chr3D 93.565 2735 127 20 1937 4658 429596633 429599331 0.000000e+00 4030.0
5 TraesCS3B01G351400 chr3D 94.996 1159 40 7 789 1940 429595430 429596577 0.000000e+00 1803.0
6 TraesCS3B01G351400 chr3D 86.236 356 42 5 432 785 515025170 515025520 3.400000e-101 379.0
7 TraesCS3B01G351400 chr3A 93.462 2738 134 19 1937 4658 556461420 556458712 0.000000e+00 4023.0
8 TraesCS3B01G351400 chr3A 91.660 1175 39 17 786 1940 556462611 556461476 0.000000e+00 1572.0
9 TraesCS3B01G351400 chr2B 94.037 436 20 6 1 433 792126129 792126561 0.000000e+00 656.0
10 TraesCS3B01G351400 chr2B 93.548 434 24 4 1 433 96107614 96108044 1.090000e-180 643.0
11 TraesCS3B01G351400 chr2B 93.119 436 26 3 1 436 689482281 689482712 1.830000e-178 636.0
12 TraesCS3B01G351400 chr2B 85.672 335 44 4 448 781 633392942 633393273 2.670000e-92 350.0
13 TraesCS3B01G351400 chr6D 93.779 434 25 2 1 433 450350252 450349820 0.000000e+00 651.0
14 TraesCS3B01G351400 chr6D 93.548 434 24 4 1 434 394214173 394214602 1.090000e-180 643.0
15 TraesCS3B01G351400 chr6D 87.755 343 33 7 448 787 83281352 83281016 4.370000e-105 392.0
16 TraesCS3B01G351400 chr5B 93.793 435 24 3 2 435 694674654 694675086 0.000000e+00 651.0
17 TraesCS3B01G351400 chr5B 94.737 57 3 0 789 845 421285851 421285795 6.420000e-14 89.8
18 TraesCS3B01G351400 chr1D 93.548 434 27 1 1 434 464380215 464379783 0.000000e+00 645.0
19 TraesCS3B01G351400 chr7B 93.151 438 25 5 1 436 82717076 82717510 5.080000e-179 638.0
20 TraesCS3B01G351400 chr7B 85.380 342 44 6 448 786 712066502 712066164 2.670000e-92 350.0
21 TraesCS3B01G351400 chr7B 84.463 354 43 8 432 782 49421096 49420752 5.770000e-89 339.0
22 TraesCS3B01G351400 chr6B 85.673 342 40 8 448 786 133749333 133749668 7.420000e-93 351.0
23 TraesCS3B01G351400 chr2A 85.549 346 39 7 443 783 10369061 10368722 7.420000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G351400 chr3B 561536825 561541482 4657 False 8602.0 8602 100.0000 1 4658 1 chr3B.!!$F1 4657
1 TraesCS3B01G351400 chr3D 429595430 429599331 3901 False 2916.5 4030 94.2805 789 4658 2 chr3D.!!$F2 3869
2 TraesCS3B01G351400 chr3A 556458712 556462611 3899 True 2797.5 4023 92.5610 786 4658 2 chr3A.!!$R1 3872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 690 0.107848 AAACCGATGGCCTAGGAACG 60.108 55.000 14.75 11.25 0.00 3.95 F
779 780 0.663153 GCGAGCGGCAAATAGGATTT 59.337 50.000 1.45 0.00 42.87 2.17 F
1055 1060 1.004560 CAAGGCGAGCCAGTTCTCA 60.005 57.895 17.18 0.00 38.92 3.27 F
1910 1935 0.250901 AGGCGTCCTTGTTCATGCTT 60.251 50.000 0.00 0.00 0.00 3.91 F
1960 2044 0.617820 GGGAACTGGAGGAGGCTGTA 60.618 60.000 0.00 0.00 0.00 2.74 F
2060 2144 0.734889 GGACATGGGCACTGATTTCG 59.265 55.000 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 1920 0.109597 CGCCAAGCATGAACAAGGAC 60.110 55.000 0.00 0.0 0.00 3.85 R
1910 1935 1.069204 GATGCTATGTTCTCTCCGCCA 59.931 52.381 0.00 0.0 0.00 5.69 R
3037 3122 0.533755 CCCAAATCGCCTAGCCTCAG 60.534 60.000 0.00 0.0 0.00 3.35 R
3081 3166 0.681175 GCCAGATTTGCCTGTTTGGT 59.319 50.000 0.00 0.0 38.35 3.67 R
3375 3460 2.097036 GGGATCTTTTAACGTTGGGGG 58.903 52.381 11.99 0.0 0.00 5.40 R
3916 4011 3.761218 ACACACAATTTCTGGACAACACA 59.239 39.130 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 9.996554 TCATATATAACATGTTCAAATCGGAGT 57.003 29.630 15.85 0.00 0.00 3.85
131 132 4.921470 ACATGTTCAAATCGGAGTTACG 57.079 40.909 0.00 0.00 0.00 3.18
132 133 3.682858 ACATGTTCAAATCGGAGTTACGG 59.317 43.478 0.00 0.00 0.00 4.02
133 134 3.389925 TGTTCAAATCGGAGTTACGGT 57.610 42.857 0.00 0.00 0.00 4.83
134 135 3.731089 TGTTCAAATCGGAGTTACGGTT 58.269 40.909 0.00 0.00 39.15 4.44
135 136 4.128643 TGTTCAAATCGGAGTTACGGTTT 58.871 39.130 0.00 0.00 46.99 3.27
136 137 5.295950 TGTTCAAATCGGAGTTACGGTTTA 58.704 37.500 0.00 0.00 44.52 2.01
137 138 5.757320 TGTTCAAATCGGAGTTACGGTTTAA 59.243 36.000 0.00 0.00 44.52 1.52
138 139 6.259608 TGTTCAAATCGGAGTTACGGTTTAAA 59.740 34.615 0.00 0.00 44.52 1.52
139 140 6.857777 TCAAATCGGAGTTACGGTTTAAAA 57.142 33.333 0.00 0.00 44.52 1.52
140 141 6.890558 TCAAATCGGAGTTACGGTTTAAAAG 58.109 36.000 0.00 0.00 44.52 2.27
141 142 6.705381 TCAAATCGGAGTTACGGTTTAAAAGA 59.295 34.615 0.00 0.00 44.52 2.52
142 143 7.388500 TCAAATCGGAGTTACGGTTTAAAAGAT 59.612 33.333 0.00 0.00 44.52 2.40
143 144 8.658609 CAAATCGGAGTTACGGTTTAAAAGATA 58.341 33.333 0.00 0.00 44.52 1.98
144 145 8.953368 AATCGGAGTTACGGTTTAAAAGATAT 57.047 30.769 0.00 0.00 32.43 1.63
145 146 7.760131 TCGGAGTTACGGTTTAAAAGATATG 57.240 36.000 0.00 0.00 0.00 1.78
146 147 6.757947 TCGGAGTTACGGTTTAAAAGATATGG 59.242 38.462 0.00 0.00 0.00 2.74
147 148 6.757947 CGGAGTTACGGTTTAAAAGATATGGA 59.242 38.462 0.00 0.00 0.00 3.41
148 149 7.440255 CGGAGTTACGGTTTAAAAGATATGGAT 59.560 37.037 0.00 0.00 0.00 3.41
149 150 8.557029 GGAGTTACGGTTTAAAAGATATGGATG 58.443 37.037 0.00 0.00 0.00 3.51
150 151 9.321562 GAGTTACGGTTTAAAAGATATGGATGA 57.678 33.333 0.00 0.00 0.00 2.92
151 152 9.847224 AGTTACGGTTTAAAAGATATGGATGAT 57.153 29.630 0.00 0.00 0.00 2.45
185 186 9.787532 AACATTGTTTGACTTAAATATGATCCG 57.212 29.630 0.00 0.00 32.25 4.18
186 187 7.915397 ACATTGTTTGACTTAAATATGATCCGC 59.085 33.333 0.00 0.00 32.25 5.54
187 188 6.043327 TGTTTGACTTAAATATGATCCGCG 57.957 37.500 0.00 0.00 0.00 6.46
188 189 5.007234 TGTTTGACTTAAATATGATCCGCGG 59.993 40.000 22.12 22.12 0.00 6.46
189 190 4.594123 TGACTTAAATATGATCCGCGGA 57.406 40.909 33.12 33.12 0.00 5.54
190 191 5.147330 TGACTTAAATATGATCCGCGGAT 57.853 39.130 39.64 39.64 37.59 4.18
191 192 4.929211 TGACTTAAATATGATCCGCGGATG 59.071 41.667 43.46 26.82 34.60 3.51
192 193 5.147330 ACTTAAATATGATCCGCGGATGA 57.853 39.130 43.46 36.54 34.60 2.92
193 194 5.547465 ACTTAAATATGATCCGCGGATGAA 58.453 37.500 43.46 30.43 34.60 2.57
194 195 6.173339 ACTTAAATATGATCCGCGGATGAAT 58.827 36.000 43.46 33.85 34.60 2.57
195 196 6.655003 ACTTAAATATGATCCGCGGATGAATT 59.345 34.615 43.46 31.51 34.60 2.17
196 197 7.822334 ACTTAAATATGATCCGCGGATGAATTA 59.178 33.333 43.46 28.95 34.60 1.40
197 198 6.422776 AAATATGATCCGCGGATGAATTAC 57.577 37.500 43.46 27.45 34.60 1.89
198 199 2.163818 TGATCCGCGGATGAATTACC 57.836 50.000 43.46 26.73 34.60 2.85
199 200 1.691976 TGATCCGCGGATGAATTACCT 59.308 47.619 43.46 19.25 34.60 3.08
200 201 2.894765 TGATCCGCGGATGAATTACCTA 59.105 45.455 43.46 11.76 34.60 3.08
201 202 3.322541 TGATCCGCGGATGAATTACCTAA 59.677 43.478 43.46 11.52 34.60 2.69
202 203 3.823281 TCCGCGGATGAATTACCTAAA 57.177 42.857 27.28 0.00 0.00 1.85
203 204 4.139859 TCCGCGGATGAATTACCTAAAA 57.860 40.909 27.28 0.00 0.00 1.52
204 205 3.872771 TCCGCGGATGAATTACCTAAAAC 59.127 43.478 27.28 0.00 0.00 2.43
205 206 3.623960 CCGCGGATGAATTACCTAAAACA 59.376 43.478 24.07 0.00 0.00 2.83
206 207 4.274950 CCGCGGATGAATTACCTAAAACAT 59.725 41.667 24.07 0.00 0.00 2.71
207 208 5.440685 CGCGGATGAATTACCTAAAACATC 58.559 41.667 0.00 0.00 34.37 3.06
208 209 5.007234 CGCGGATGAATTACCTAAAACATCA 59.993 40.000 0.00 0.00 35.54 3.07
209 210 6.430451 GCGGATGAATTACCTAAAACATCAG 58.570 40.000 0.00 0.00 35.54 2.90
210 211 6.513393 GCGGATGAATTACCTAAAACATCAGG 60.513 42.308 0.00 0.00 35.54 3.86
211 212 6.017109 CGGATGAATTACCTAAAACATCAGGG 60.017 42.308 0.00 0.00 36.15 4.45
212 213 6.265422 GGATGAATTACCTAAAACATCAGGGG 59.735 42.308 0.00 0.00 36.15 4.79
213 214 5.515106 TGAATTACCTAAAACATCAGGGGG 58.485 41.667 0.00 0.00 36.15 5.40
245 246 5.963176 AAATGTAAAATAACGGTTCGGGT 57.037 34.783 0.00 0.00 0.00 5.28
246 247 4.950434 ATGTAAAATAACGGTTCGGGTG 57.050 40.909 0.00 0.00 0.00 4.61
247 248 3.737850 TGTAAAATAACGGTTCGGGTGT 58.262 40.909 0.00 0.00 0.00 4.16
248 249 3.497640 TGTAAAATAACGGTTCGGGTGTG 59.502 43.478 0.00 0.00 0.00 3.82
249 250 2.547299 AAATAACGGTTCGGGTGTGA 57.453 45.000 0.00 0.00 0.00 3.58
250 251 1.799544 AATAACGGTTCGGGTGTGAC 58.200 50.000 0.00 0.00 0.00 3.67
251 252 0.971386 ATAACGGTTCGGGTGTGACT 59.029 50.000 0.00 0.00 0.00 3.41
252 253 0.752054 TAACGGTTCGGGTGTGACTT 59.248 50.000 0.00 0.00 0.00 3.01
253 254 0.752054 AACGGTTCGGGTGTGACTTA 59.248 50.000 0.00 0.00 0.00 2.24
254 255 0.752054 ACGGTTCGGGTGTGACTTAA 59.248 50.000 0.00 0.00 0.00 1.85
255 256 1.138661 ACGGTTCGGGTGTGACTTAAA 59.861 47.619 0.00 0.00 0.00 1.52
256 257 2.224354 ACGGTTCGGGTGTGACTTAAAT 60.224 45.455 0.00 0.00 0.00 1.40
257 258 2.414138 CGGTTCGGGTGTGACTTAAATC 59.586 50.000 0.00 0.00 0.00 2.17
258 259 2.745821 GGTTCGGGTGTGACTTAAATCC 59.254 50.000 0.00 0.00 0.00 3.01
259 260 3.404899 GTTCGGGTGTGACTTAAATCCA 58.595 45.455 0.00 0.00 0.00 3.41
260 261 3.328382 TCGGGTGTGACTTAAATCCAG 57.672 47.619 0.00 0.00 0.00 3.86
261 262 2.901192 TCGGGTGTGACTTAAATCCAGA 59.099 45.455 0.00 0.00 0.00 3.86
262 263 3.000727 CGGGTGTGACTTAAATCCAGAC 58.999 50.000 0.00 0.00 0.00 3.51
263 264 3.306780 CGGGTGTGACTTAAATCCAGACT 60.307 47.826 0.00 0.00 0.00 3.24
264 265 4.003648 GGGTGTGACTTAAATCCAGACTG 58.996 47.826 0.00 0.00 0.00 3.51
265 266 3.437049 GGTGTGACTTAAATCCAGACTGC 59.563 47.826 0.00 0.00 0.00 4.40
266 267 3.123621 GTGTGACTTAAATCCAGACTGCG 59.876 47.826 0.00 0.00 0.00 5.18
267 268 2.673368 GTGACTTAAATCCAGACTGCGG 59.327 50.000 0.00 0.00 0.00 5.69
268 269 2.280628 GACTTAAATCCAGACTGCGGG 58.719 52.381 0.00 0.00 0.00 6.13
269 270 1.628846 ACTTAAATCCAGACTGCGGGT 59.371 47.619 0.00 0.00 0.00 5.28
270 271 2.039879 ACTTAAATCCAGACTGCGGGTT 59.960 45.455 0.00 0.00 0.00 4.11
271 272 2.107950 TAAATCCAGACTGCGGGTTG 57.892 50.000 0.00 0.00 0.00 3.77
272 273 0.400213 AAATCCAGACTGCGGGTTGA 59.600 50.000 0.00 0.00 0.00 3.18
273 274 0.620556 AATCCAGACTGCGGGTTGAT 59.379 50.000 0.00 0.00 0.00 2.57
274 275 0.620556 ATCCAGACTGCGGGTTGATT 59.379 50.000 0.00 0.00 0.00 2.57
275 276 0.400213 TCCAGACTGCGGGTTGATTT 59.600 50.000 0.00 0.00 0.00 2.17
276 277 1.202879 TCCAGACTGCGGGTTGATTTT 60.203 47.619 0.00 0.00 0.00 1.82
277 278 2.039216 TCCAGACTGCGGGTTGATTTTA 59.961 45.455 0.00 0.00 0.00 1.52
278 279 2.817258 CCAGACTGCGGGTTGATTTTAA 59.183 45.455 0.00 0.00 0.00 1.52
279 280 3.365969 CCAGACTGCGGGTTGATTTTAAC 60.366 47.826 0.00 0.00 0.00 2.01
280 281 3.252215 CAGACTGCGGGTTGATTTTAACA 59.748 43.478 0.00 0.00 32.22 2.41
281 282 3.886505 AGACTGCGGGTTGATTTTAACAA 59.113 39.130 0.00 0.00 32.22 2.83
282 283 4.339814 AGACTGCGGGTTGATTTTAACAAA 59.660 37.500 0.00 0.00 32.22 2.83
283 284 5.012328 ACTGCGGGTTGATTTTAACAAAA 57.988 34.783 0.00 0.00 32.22 2.44
284 285 4.806775 ACTGCGGGTTGATTTTAACAAAAC 59.193 37.500 0.00 0.00 32.37 2.43
285 286 4.755411 TGCGGGTTGATTTTAACAAAACA 58.245 34.783 0.00 0.00 32.37 2.83
286 287 4.567159 TGCGGGTTGATTTTAACAAAACAC 59.433 37.500 0.00 0.00 32.37 3.32
287 288 4.567159 GCGGGTTGATTTTAACAAAACACA 59.433 37.500 0.00 0.00 32.37 3.72
288 289 5.276631 GCGGGTTGATTTTAACAAAACACAG 60.277 40.000 0.00 0.00 32.37 3.66
289 290 5.233263 CGGGTTGATTTTAACAAAACACAGG 59.767 40.000 0.00 0.00 32.37 4.00
290 291 5.525745 GGGTTGATTTTAACAAAACACAGGG 59.474 40.000 0.00 0.00 32.37 4.45
291 292 6.342111 GGTTGATTTTAACAAAACACAGGGA 58.658 36.000 0.00 0.00 32.37 4.20
292 293 6.256975 GGTTGATTTTAACAAAACACAGGGAC 59.743 38.462 0.00 0.00 32.37 4.46
293 294 6.783708 TGATTTTAACAAAACACAGGGACT 57.216 33.333 0.00 0.00 32.94 3.85
294 295 7.176589 TGATTTTAACAAAACACAGGGACTT 57.823 32.000 0.00 0.00 30.68 3.01
295 296 7.616313 TGATTTTAACAAAACACAGGGACTTT 58.384 30.769 0.00 0.00 30.68 2.66
296 297 8.097662 TGATTTTAACAAAACACAGGGACTTTT 58.902 29.630 0.00 0.00 30.68 2.27
297 298 7.659652 TTTTAACAAAACACAGGGACTTTTG 57.340 32.000 0.00 0.00 39.66 2.44
298 299 4.882842 AACAAAACACAGGGACTTTTGT 57.117 36.364 0.00 0.00 45.58 2.83
299 300 4.186856 ACAAAACACAGGGACTTTTGTG 57.813 40.909 3.85 3.29 43.28 3.33
343 344 8.865590 TTCATTTTAACTTAAAACAGGACTGC 57.134 30.769 8.56 0.00 40.12 4.40
344 345 7.136119 TCATTTTAACTTAAAACAGGACTGCG 58.864 34.615 8.56 0.00 40.12 5.18
345 346 5.427036 TTTAACTTAAAACAGGACTGCGG 57.573 39.130 0.00 0.00 0.00 5.69
346 347 1.892209 ACTTAAAACAGGACTGCGGG 58.108 50.000 0.00 0.00 0.00 6.13
347 348 1.165270 CTTAAAACAGGACTGCGGGG 58.835 55.000 0.00 0.00 0.00 5.73
348 349 0.475044 TTAAAACAGGACTGCGGGGT 59.525 50.000 0.00 0.00 0.00 4.95
349 350 0.250553 TAAAACAGGACTGCGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
350 351 1.990160 AAAACAGGACTGCGGGGTGA 61.990 55.000 0.00 0.00 0.00 4.02
351 352 1.990160 AAACAGGACTGCGGGGTGAA 61.990 55.000 0.00 0.00 0.00 3.18
352 353 1.779061 AACAGGACTGCGGGGTGAAT 61.779 55.000 0.00 0.00 0.00 2.57
353 354 1.002134 CAGGACTGCGGGGTGAATT 60.002 57.895 0.00 0.00 0.00 2.17
354 355 1.026718 CAGGACTGCGGGGTGAATTC 61.027 60.000 0.00 0.00 0.00 2.17
355 356 1.201429 AGGACTGCGGGGTGAATTCT 61.201 55.000 7.05 0.00 0.00 2.40
356 357 0.744771 GGACTGCGGGGTGAATTCTC 60.745 60.000 7.05 2.70 0.00 2.87
357 358 0.250513 GACTGCGGGGTGAATTCTCT 59.749 55.000 7.05 0.00 0.00 3.10
358 359 1.480954 GACTGCGGGGTGAATTCTCTA 59.519 52.381 7.05 0.00 0.00 2.43
359 360 1.906574 ACTGCGGGGTGAATTCTCTAA 59.093 47.619 7.05 0.00 0.00 2.10
360 361 2.304761 ACTGCGGGGTGAATTCTCTAAA 59.695 45.455 7.05 0.00 0.00 1.85
361 362 3.244770 ACTGCGGGGTGAATTCTCTAAAA 60.245 43.478 7.05 0.00 0.00 1.52
362 363 3.947834 CTGCGGGGTGAATTCTCTAAAAT 59.052 43.478 7.05 0.00 0.00 1.82
363 364 5.105567 TGCGGGGTGAATTCTCTAAAATA 57.894 39.130 7.05 0.00 0.00 1.40
364 365 5.123227 TGCGGGGTGAATTCTCTAAAATAG 58.877 41.667 7.05 0.00 0.00 1.73
365 366 5.104693 TGCGGGGTGAATTCTCTAAAATAGA 60.105 40.000 7.05 0.00 0.00 1.98
366 367 5.820947 GCGGGGTGAATTCTCTAAAATAGAA 59.179 40.000 7.05 0.00 37.38 2.10
367 368 6.017852 GCGGGGTGAATTCTCTAAAATAGAAG 60.018 42.308 7.05 0.00 36.46 2.85
368 369 6.483640 CGGGGTGAATTCTCTAAAATAGAAGG 59.516 42.308 7.05 0.00 36.46 3.46
369 370 7.574607 GGGGTGAATTCTCTAAAATAGAAGGA 58.425 38.462 7.05 0.00 36.46 3.36
370 371 7.499563 GGGGTGAATTCTCTAAAATAGAAGGAC 59.500 40.741 7.05 0.00 36.46 3.85
371 372 8.268605 GGGTGAATTCTCTAAAATAGAAGGACT 58.731 37.037 7.05 0.00 36.46 3.85
372 373 9.674068 GGTGAATTCTCTAAAATAGAAGGACTT 57.326 33.333 7.05 0.00 36.46 3.01
399 400 4.533919 AAAAATGCCATGACGGATGAAA 57.466 36.364 0.00 0.00 36.56 2.69
400 401 3.788333 AAATGCCATGACGGATGAAAG 57.212 42.857 0.00 0.00 36.56 2.62
401 402 2.715749 ATGCCATGACGGATGAAAGA 57.284 45.000 0.00 0.00 36.56 2.52
402 403 2.488204 TGCCATGACGGATGAAAGAA 57.512 45.000 0.00 0.00 36.56 2.52
403 404 2.789213 TGCCATGACGGATGAAAGAAA 58.211 42.857 0.00 0.00 36.56 2.52
404 405 2.487762 TGCCATGACGGATGAAAGAAAC 59.512 45.455 0.00 0.00 36.56 2.78
405 406 2.159379 GCCATGACGGATGAAAGAAACC 60.159 50.000 0.00 0.00 36.56 3.27
406 407 3.081061 CCATGACGGATGAAAGAAACCA 58.919 45.455 0.00 0.00 36.56 3.67
407 408 3.505680 CCATGACGGATGAAAGAAACCAA 59.494 43.478 0.00 0.00 36.56 3.67
408 409 4.022416 CCATGACGGATGAAAGAAACCAAA 60.022 41.667 0.00 0.00 36.56 3.28
409 410 5.336690 CCATGACGGATGAAAGAAACCAAAT 60.337 40.000 0.00 0.00 36.56 2.32
410 411 5.782893 TGACGGATGAAAGAAACCAAATT 57.217 34.783 0.00 0.00 0.00 1.82
411 412 6.155475 TGACGGATGAAAGAAACCAAATTT 57.845 33.333 0.00 0.00 0.00 1.82
412 413 5.982516 TGACGGATGAAAGAAACCAAATTTG 59.017 36.000 11.40 11.40 0.00 2.32
413 414 4.749598 ACGGATGAAAGAAACCAAATTTGC 59.250 37.500 12.92 0.00 0.00 3.68
414 415 4.990426 CGGATGAAAGAAACCAAATTTGCT 59.010 37.500 12.92 1.52 0.00 3.91
415 416 5.466393 CGGATGAAAGAAACCAAATTTGCTT 59.534 36.000 12.92 7.69 0.00 3.91
416 417 6.018016 CGGATGAAAGAAACCAAATTTGCTTT 60.018 34.615 16.54 16.54 33.79 3.51
417 418 7.170658 CGGATGAAAGAAACCAAATTTGCTTTA 59.829 33.333 12.92 6.64 32.50 1.85
418 419 9.002600 GGATGAAAGAAACCAAATTTGCTTTAT 57.997 29.630 12.92 6.48 32.50 1.40
479 480 9.942850 AAAAACTGAAAAAGGAAAATGAGAGAA 57.057 25.926 0.00 0.00 0.00 2.87
480 481 9.942850 AAAACTGAAAAAGGAAAATGAGAGAAA 57.057 25.926 0.00 0.00 0.00 2.52
481 482 9.942850 AAACTGAAAAAGGAAAATGAGAGAAAA 57.057 25.926 0.00 0.00 0.00 2.29
482 483 9.591792 AACTGAAAAAGGAAAATGAGAGAAAAG 57.408 29.630 0.00 0.00 0.00 2.27
483 484 8.971073 ACTGAAAAAGGAAAATGAGAGAAAAGA 58.029 29.630 0.00 0.00 0.00 2.52
484 485 9.807649 CTGAAAAAGGAAAATGAGAGAAAAGAA 57.192 29.630 0.00 0.00 0.00 2.52
527 528 8.596271 AAAAACGGAACAAAGAAAGAAAAGAA 57.404 26.923 0.00 0.00 0.00 2.52
528 529 8.596271 AAAACGGAACAAAGAAAGAAAAGAAA 57.404 26.923 0.00 0.00 0.00 2.52
529 530 8.596271 AAACGGAACAAAGAAAGAAAAGAAAA 57.404 26.923 0.00 0.00 0.00 2.29
530 531 8.596271 AACGGAACAAAGAAAGAAAAGAAAAA 57.404 26.923 0.00 0.00 0.00 1.94
618 619 7.683437 AAAAACCGATTAAGGAACCTTCTAG 57.317 36.000 9.50 1.29 37.47 2.43
619 620 6.616237 AAACCGATTAAGGAACCTTCTAGA 57.384 37.500 9.50 0.00 37.47 2.43
620 621 6.616237 AACCGATTAAGGAACCTTCTAGAA 57.384 37.500 9.50 4.81 37.47 2.10
621 622 6.223351 ACCGATTAAGGAACCTTCTAGAAG 57.777 41.667 23.31 23.31 37.47 2.85
622 623 5.720520 ACCGATTAAGGAACCTTCTAGAAGT 59.279 40.000 26.83 12.76 37.47 3.01
623 624 6.212993 ACCGATTAAGGAACCTTCTAGAAGTT 59.787 38.462 26.83 20.77 37.47 2.66
624 625 7.104290 CCGATTAAGGAACCTTCTAGAAGTTT 58.896 38.462 26.83 21.14 37.47 2.66
625 626 7.278203 CCGATTAAGGAACCTTCTAGAAGTTTC 59.722 40.741 26.41 26.41 38.58 2.78
626 627 8.035984 CGATTAAGGAACCTTCTAGAAGTTTCT 58.964 37.037 30.35 23.30 39.08 2.52
627 628 9.373603 GATTAAGGAACCTTCTAGAAGTTTCTC 57.626 37.037 30.35 23.10 39.08 2.87
628 629 6.749036 AAGGAACCTTCTAGAAGTTTCTCA 57.251 37.500 30.35 0.22 39.08 3.27
629 630 6.749036 AGGAACCTTCTAGAAGTTTCTCAA 57.251 37.500 30.35 0.00 39.08 3.02
630 631 7.138054 AGGAACCTTCTAGAAGTTTCTCAAA 57.862 36.000 30.35 0.00 39.08 2.69
631 632 7.574607 AGGAACCTTCTAGAAGTTTCTCAAAA 58.425 34.615 30.35 0.00 39.08 2.44
632 633 7.499563 AGGAACCTTCTAGAAGTTTCTCAAAAC 59.500 37.037 30.35 18.52 44.24 2.43
633 634 7.255173 GGAACCTTCTAGAAGTTTCTCAAAACC 60.255 40.741 30.35 16.48 44.87 3.27
634 635 6.659824 ACCTTCTAGAAGTTTCTCAAAACCA 58.340 36.000 26.83 0.00 44.87 3.67
635 636 6.768381 ACCTTCTAGAAGTTTCTCAAAACCAG 59.232 38.462 26.83 11.56 44.87 4.00
636 637 6.205658 CCTTCTAGAAGTTTCTCAAAACCAGG 59.794 42.308 26.83 6.65 44.87 4.45
637 638 6.494666 TCTAGAAGTTTCTCAAAACCAGGA 57.505 37.500 0.00 0.00 44.87 3.86
638 639 6.895782 TCTAGAAGTTTCTCAAAACCAGGAA 58.104 36.000 0.00 0.00 44.87 3.36
639 640 7.343357 TCTAGAAGTTTCTCAAAACCAGGAAA 58.657 34.615 0.00 0.00 44.87 3.13
640 641 6.850752 AGAAGTTTCTCAAAACCAGGAAAA 57.149 33.333 0.00 0.00 44.87 2.29
641 642 7.239763 AGAAGTTTCTCAAAACCAGGAAAAA 57.760 32.000 0.00 0.00 44.87 1.94
642 643 7.097192 AGAAGTTTCTCAAAACCAGGAAAAAC 58.903 34.615 0.00 0.00 44.87 2.43
643 644 5.730550 AGTTTCTCAAAACCAGGAAAAACC 58.269 37.500 0.00 0.00 44.87 3.27
644 645 5.247337 AGTTTCTCAAAACCAGGAAAAACCA 59.753 36.000 0.00 0.00 44.87 3.67
645 646 5.337578 TTCTCAAAACCAGGAAAAACCAG 57.662 39.130 0.00 0.00 42.04 4.00
646 647 3.132111 TCTCAAAACCAGGAAAAACCAGC 59.868 43.478 0.00 0.00 42.04 4.85
647 648 3.103742 TCAAAACCAGGAAAAACCAGCT 58.896 40.909 0.00 0.00 42.04 4.24
648 649 3.118811 TCAAAACCAGGAAAAACCAGCTG 60.119 43.478 6.78 6.78 42.04 4.24
649 650 1.413118 AACCAGGAAAAACCAGCTGG 58.587 50.000 31.60 31.60 42.04 4.85
650 651 0.469892 ACCAGGAAAAACCAGCTGGG 60.470 55.000 35.42 18.18 42.04 4.45
651 652 0.178964 CCAGGAAAAACCAGCTGGGA 60.179 55.000 35.42 0.00 42.04 4.37
652 653 1.703411 CAGGAAAAACCAGCTGGGAA 58.297 50.000 35.42 0.00 42.04 3.97
653 654 1.341209 CAGGAAAAACCAGCTGGGAAC 59.659 52.381 35.42 20.33 42.04 3.62
654 655 1.217942 AGGAAAAACCAGCTGGGAACT 59.782 47.619 35.42 20.49 42.04 3.01
655 656 2.039418 GGAAAAACCAGCTGGGAACTT 58.961 47.619 35.42 21.94 41.15 2.66
656 657 2.035961 GGAAAAACCAGCTGGGAACTTC 59.964 50.000 35.42 27.25 41.15 3.01
657 658 2.755952 AAAACCAGCTGGGAACTTCT 57.244 45.000 35.42 11.03 41.15 2.85
658 659 3.876309 AAAACCAGCTGGGAACTTCTA 57.124 42.857 35.42 0.00 41.15 2.10
659 660 3.425162 AAACCAGCTGGGAACTTCTAG 57.575 47.619 35.42 7.71 41.15 2.43
660 661 2.327325 ACCAGCTGGGAACTTCTAGA 57.673 50.000 35.42 0.00 41.15 2.43
661 662 2.621070 ACCAGCTGGGAACTTCTAGAA 58.379 47.619 35.42 4.81 41.15 2.10
662 663 2.569404 ACCAGCTGGGAACTTCTAGAAG 59.431 50.000 35.42 27.41 41.31 2.85
663 664 2.093235 CCAGCTGGGAACTTCTAGAAGG 60.093 54.545 30.98 16.18 40.02 3.46
664 665 2.569404 CAGCTGGGAACTTCTAGAAGGT 59.431 50.000 30.98 27.55 41.86 3.50
665 666 3.008485 CAGCTGGGAACTTCTAGAAGGTT 59.992 47.826 30.98 22.74 38.71 3.50
666 667 3.262151 AGCTGGGAACTTCTAGAAGGTTC 59.738 47.826 30.98 25.60 38.71 3.62
668 669 3.630892 GGGAACTTCTAGAAGGTTCCC 57.369 52.381 37.36 37.36 46.15 3.97
669 670 2.910977 GGGAACTTCTAGAAGGTTCCCA 59.089 50.000 40.34 14.92 46.15 4.37
670 671 3.329814 GGGAACTTCTAGAAGGTTCCCAA 59.670 47.826 40.34 14.38 46.15 4.12
671 672 4.202535 GGGAACTTCTAGAAGGTTCCCAAA 60.203 45.833 40.34 13.84 46.15 3.28
672 673 5.382616 GGAACTTCTAGAAGGTTCCCAAAA 58.617 41.667 31.67 4.56 38.71 2.44
673 674 5.241064 GGAACTTCTAGAAGGTTCCCAAAAC 59.759 44.000 31.67 17.95 38.71 2.43
674 675 4.726583 ACTTCTAGAAGGTTCCCAAAACC 58.273 43.478 30.98 0.00 42.53 3.27
675 676 3.412237 TCTAGAAGGTTCCCAAAACCG 57.588 47.619 0.00 0.00 44.82 4.44
676 677 2.974099 TCTAGAAGGTTCCCAAAACCGA 59.026 45.455 0.00 0.00 44.82 4.69
677 678 2.971901 AGAAGGTTCCCAAAACCGAT 57.028 45.000 1.52 0.00 44.82 4.18
678 679 2.514803 AGAAGGTTCCCAAAACCGATG 58.485 47.619 1.52 0.00 44.82 3.84
679 680 1.544246 GAAGGTTCCCAAAACCGATGG 59.456 52.381 1.52 0.00 44.82 3.51
680 681 0.898326 AGGTTCCCAAAACCGATGGC 60.898 55.000 1.52 0.00 44.82 4.40
681 682 1.589630 GTTCCCAAAACCGATGGCC 59.410 57.895 0.00 0.00 36.58 5.36
682 683 0.898326 GTTCCCAAAACCGATGGCCT 60.898 55.000 3.32 0.00 36.58 5.19
683 684 0.699399 TTCCCAAAACCGATGGCCTA 59.301 50.000 3.32 0.00 36.58 3.93
684 685 0.254747 TCCCAAAACCGATGGCCTAG 59.745 55.000 3.32 0.00 36.58 3.02
685 686 0.751643 CCCAAAACCGATGGCCTAGG 60.752 60.000 3.67 3.67 36.58 3.02
686 687 0.254747 CCAAAACCGATGGCCTAGGA 59.745 55.000 14.75 0.00 0.00 2.94
687 688 1.340600 CCAAAACCGATGGCCTAGGAA 60.341 52.381 14.75 0.00 0.00 3.36
688 689 1.743394 CAAAACCGATGGCCTAGGAAC 59.257 52.381 14.75 4.79 0.00 3.62
689 690 0.107848 AAACCGATGGCCTAGGAACG 60.108 55.000 14.75 11.25 0.00 3.95
690 691 1.968050 AACCGATGGCCTAGGAACGG 61.968 60.000 24.13 24.13 44.77 4.44
691 692 2.432300 CCGATGGCCTAGGAACGGT 61.432 63.158 14.75 0.00 36.38 4.83
692 693 1.520666 CGATGGCCTAGGAACGGTT 59.479 57.895 14.75 0.00 0.00 4.44
693 694 0.748450 CGATGGCCTAGGAACGGTTA 59.252 55.000 14.75 0.00 0.00 2.85
694 695 1.137479 CGATGGCCTAGGAACGGTTAA 59.863 52.381 14.75 0.00 0.00 2.01
695 696 2.419021 CGATGGCCTAGGAACGGTTAAA 60.419 50.000 14.75 0.00 0.00 1.52
696 697 3.743269 CGATGGCCTAGGAACGGTTAAAT 60.743 47.826 14.75 0.00 0.00 1.40
697 698 2.993937 TGGCCTAGGAACGGTTAAATG 58.006 47.619 14.75 0.00 0.00 2.32
698 699 2.294979 GGCCTAGGAACGGTTAAATGG 58.705 52.381 14.75 0.00 0.00 3.16
699 700 2.294979 GCCTAGGAACGGTTAAATGGG 58.705 52.381 14.75 0.00 0.00 4.00
700 701 2.294979 CCTAGGAACGGTTAAATGGGC 58.705 52.381 1.05 0.00 0.00 5.36
701 702 2.294979 CTAGGAACGGTTAAATGGGCC 58.705 52.381 0.00 0.00 0.00 5.80
705 706 3.523668 CGGTTAAATGGGCCGGCC 61.524 66.667 38.57 38.57 41.60 6.13
706 707 2.043349 GGTTAAATGGGCCGGCCT 60.043 61.111 42.70 27.02 36.10 5.19
707 708 2.423064 GGTTAAATGGGCCGGCCTG 61.423 63.158 42.70 0.00 36.10 4.85
708 709 1.680989 GTTAAATGGGCCGGCCTGT 60.681 57.895 42.70 28.97 36.10 4.00
709 710 1.077625 TTAAATGGGCCGGCCTGTT 59.922 52.632 42.70 32.46 36.10 3.16
710 711 1.254284 TTAAATGGGCCGGCCTGTTG 61.254 55.000 42.70 0.00 36.10 3.33
721 722 3.782244 CCTGTTGCGTCGCTGCTC 61.782 66.667 19.50 6.67 35.36 4.26
722 723 3.037833 CTGTTGCGTCGCTGCTCA 61.038 61.111 19.50 10.68 35.36 4.26
723 724 3.008240 CTGTTGCGTCGCTGCTCAG 62.008 63.158 19.50 15.72 35.36 3.35
724 725 2.734723 GTTGCGTCGCTGCTCAGA 60.735 61.111 19.50 0.00 35.36 3.27
725 726 2.734723 TTGCGTCGCTGCTCAGAC 60.735 61.111 19.50 0.00 35.36 3.51
729 730 2.878520 GTCGCTGCTCAGACGCTC 60.879 66.667 0.29 0.00 0.00 5.03
730 731 4.121669 TCGCTGCTCAGACGCTCC 62.122 66.667 0.29 0.00 0.00 4.70
743 744 3.414700 GCTCCCGTGTGCGAAGTG 61.415 66.667 0.00 0.00 41.33 3.16
744 745 3.414700 CTCCCGTGTGCGAAGTGC 61.415 66.667 0.00 0.00 46.70 4.40
745 746 4.980805 TCCCGTGTGCGAAGTGCC 62.981 66.667 0.00 0.00 45.60 5.01
752 753 4.927782 TGCGAAGTGCCGGCAGTT 62.928 61.111 42.25 42.25 45.60 3.16
753 754 3.660111 GCGAAGTGCCGGCAGTTT 61.660 61.111 41.67 32.17 39.43 2.66
754 755 2.252260 CGAAGTGCCGGCAGTTTG 59.748 61.111 41.67 39.60 39.43 2.93
755 756 2.250939 CGAAGTGCCGGCAGTTTGA 61.251 57.895 43.00 17.61 41.14 2.69
756 757 1.282875 GAAGTGCCGGCAGTTTGAC 59.717 57.895 41.67 28.75 39.43 3.18
762 763 4.724697 CGGCAGTTTGACGCAGCG 62.725 66.667 14.82 14.82 44.33 5.18
763 764 3.345808 GGCAGTTTGACGCAGCGA 61.346 61.111 24.65 0.00 0.00 4.93
764 765 2.171940 GCAGTTTGACGCAGCGAG 59.828 61.111 24.65 3.04 0.00 5.03
765 766 2.171940 CAGTTTGACGCAGCGAGC 59.828 61.111 24.65 13.61 40.87 5.03
777 778 4.049393 GCGAGCGGCAAATAGGAT 57.951 55.556 1.45 0.00 42.87 3.24
778 779 2.321213 GCGAGCGGCAAATAGGATT 58.679 52.632 1.45 0.00 42.87 3.01
779 780 0.663153 GCGAGCGGCAAATAGGATTT 59.337 50.000 1.45 0.00 42.87 2.17
780 781 1.065551 GCGAGCGGCAAATAGGATTTT 59.934 47.619 1.45 0.00 42.87 1.82
781 782 2.854805 GCGAGCGGCAAATAGGATTTTC 60.855 50.000 1.45 0.00 42.87 2.29
782 783 2.287009 CGAGCGGCAAATAGGATTTTCC 60.287 50.000 1.45 0.00 36.58 3.13
783 784 2.031870 AGCGGCAAATAGGATTTTCCC 58.968 47.619 1.45 0.00 37.19 3.97
784 785 2.031870 GCGGCAAATAGGATTTTCCCT 58.968 47.619 0.00 0.00 37.19 4.20
872 874 4.416738 GGTGGAGTGCCTGGCCTC 62.417 72.222 21.75 21.75 34.31 4.70
948 950 2.154798 CTTCGACCAGGCCGAGTTGA 62.155 60.000 12.68 12.68 37.35 3.18
1027 1032 2.790791 CGGAAGCTCATCCTCGGCT 61.791 63.158 2.99 0.00 37.34 5.52
1055 1060 1.004560 CAAGGCGAGCCAGTTCTCA 60.005 57.895 17.18 0.00 38.92 3.27
1164 1178 1.220477 GGCACTGCTCTTCTCCTCC 59.780 63.158 0.00 0.00 0.00 4.30
1245 1259 1.956297 CGGTGGACCACAAGTTTGTA 58.044 50.000 25.75 0.00 39.91 2.41
1248 1262 2.817844 GGTGGACCACAAGTTTGTATCC 59.182 50.000 25.75 15.54 42.07 2.59
1283 1297 1.990563 CCTTGTCGCGTTCGTATCTTT 59.009 47.619 5.77 0.00 36.96 2.52
1336 1350 6.778834 TTGTAGCATCACATCCAATTGATT 57.221 33.333 7.12 0.00 29.64 2.57
1374 1388 1.186200 TGTTCATGAGGCGCTACTCT 58.814 50.000 7.64 0.00 38.32 3.24
1416 1430 7.414222 AGTCAAATTGGCATATCTGTGATTT 57.586 32.000 0.00 0.00 0.00 2.17
1417 1431 7.844009 AGTCAAATTGGCATATCTGTGATTTT 58.156 30.769 0.00 0.00 0.00 1.82
1448 1463 5.199723 TGATCTGATGTTCTCTCTGCTACT 58.800 41.667 0.00 0.00 0.00 2.57
1493 1511 7.167924 TGCCAACATGCTTATCTATCAAAAA 57.832 32.000 0.00 0.00 0.00 1.94
1739 1760 4.462834 TCGTTATGGATGTGACAGAGAAGT 59.537 41.667 0.00 0.00 0.00 3.01
1820 1845 3.389656 TGTCCATATATTGACGGAGCCAA 59.610 43.478 11.24 0.00 34.18 4.52
1895 1920 1.450531 GCATGGGATTGAGGAAGGCG 61.451 60.000 0.00 0.00 0.00 5.52
1910 1935 0.250901 AGGCGTCCTTGTTCATGCTT 60.251 50.000 0.00 0.00 0.00 3.91
1960 2044 0.617820 GGGAACTGGAGGAGGCTGTA 60.618 60.000 0.00 0.00 0.00 2.74
1987 2071 7.017551 AGTCAATTAGGTGCTCAATATATGGGA 59.982 37.037 0.00 0.00 0.00 4.37
2060 2144 0.734889 GGACATGGGCACTGATTTCG 59.265 55.000 0.00 0.00 0.00 3.46
2093 2177 8.732746 AGTTGGTTATATGTGTTACAGAATCC 57.267 34.615 0.00 0.00 0.00 3.01
2158 2242 9.386122 ACCAAATCTAGTACATGATTCTATCCT 57.614 33.333 0.00 0.00 32.43 3.24
2247 2331 8.195165 TGACCCCATGTTAATTTCACAAAATA 57.805 30.769 0.00 0.00 33.93 1.40
2394 2478 1.338389 GCCATTGCCTTTCATTGCAGT 60.338 47.619 0.00 0.00 38.95 4.40
2422 2506 3.369471 CCAAAACAGATTCTCGAGGGCTA 60.369 47.826 13.56 0.00 0.00 3.93
2427 2511 2.860735 CAGATTCTCGAGGGCTAAAACG 59.139 50.000 13.56 0.00 0.00 3.60
2438 2522 4.256110 AGGGCTAAAACGCTACGTATTTT 58.744 39.130 9.59 9.59 39.99 1.82
2441 2525 5.063312 GGGCTAAAACGCTACGTATTTTGTA 59.937 40.000 13.19 0.19 39.99 2.41
2475 2559 5.715070 CATGGGCTTAGCTATAGTCAGTAC 58.285 45.833 3.59 0.00 0.00 2.73
2476 2560 4.800023 TGGGCTTAGCTATAGTCAGTACA 58.200 43.478 3.59 0.00 0.00 2.90
2525 2610 6.694411 GGCTGAAGTAAATAAATGTGCATGAG 59.306 38.462 0.00 0.00 0.00 2.90
2544 2629 9.836864 TGCATGAGAATAGTGTAGTATGAAAAT 57.163 29.630 0.00 0.00 0.00 1.82
2733 2818 9.974980 TTAGCAGACGATACAATACATGATTTA 57.025 29.630 0.00 0.00 0.00 1.40
2803 2888 8.608844 ATCTTAGTACTTCACAGGAAACTTTG 57.391 34.615 0.00 0.00 40.21 2.77
2805 2890 4.781934 AGTACTTCACAGGAAACTTTGCT 58.218 39.130 0.00 0.00 40.21 3.91
2808 2893 5.757850 ACTTCACAGGAAACTTTGCTAAG 57.242 39.130 6.35 6.35 40.21 2.18
2832 2917 8.133024 AGGAATACATCAGTTCATCCTCTATC 57.867 38.462 0.00 0.00 31.29 2.08
2833 2918 7.955185 AGGAATACATCAGTTCATCCTCTATCT 59.045 37.037 0.00 0.00 31.29 1.98
2838 2923 6.157645 ACATCAGTTCATCCTCTATCTTTGGT 59.842 38.462 0.00 0.00 0.00 3.67
2851 2936 9.067986 CCTCTATCTTTGGTTAACACTTTTCTT 57.932 33.333 8.10 0.00 0.00 2.52
2856 2941 7.093992 TCTTTGGTTAACACTTTTCTTTGTGG 58.906 34.615 8.10 0.00 38.39 4.17
2857 2942 5.986501 TGGTTAACACTTTTCTTTGTGGT 57.013 34.783 8.10 0.00 38.39 4.16
2912 2997 4.883083 TGGATGGCTTCGACATAGATTAC 58.117 43.478 0.00 0.00 27.61 1.89
2927 3012 9.631452 GACATAGATTACGGGGTTAGTTATAAC 57.369 37.037 7.57 7.57 40.56 1.89
2928 3013 9.146586 ACATAGATTACGGGGTTAGTTATAACA 57.853 33.333 17.65 1.42 42.66 2.41
2939 3024 9.185680 GGGGTTAGTTATAACAAAATCTCATGT 57.814 33.333 17.65 0.00 42.66 3.21
2987 3072 6.442487 CACTGTTTTTGTGCATTGTATCAG 57.558 37.500 0.00 0.00 0.00 2.90
2991 3076 5.976534 TGTTTTTGTGCATTGTATCAGTGAC 59.023 36.000 0.00 0.00 0.00 3.67
3081 3166 6.428771 GGACCTATGTAGTAAACAAGCAAACA 59.571 38.462 0.00 0.00 42.70 2.83
3090 3175 2.671130 ACAAGCAAACACCAAACAGG 57.329 45.000 0.00 0.00 45.67 4.00
3123 3208 0.811616 CTTCGCCTGTGAGGTATGGC 60.812 60.000 0.00 0.00 37.80 4.40
3130 3215 2.766263 CCTGTGAGGTATGGCTGTCTTA 59.234 50.000 0.00 0.00 0.00 2.10
3236 3321 5.505780 AGTTGGGCTTGCTATTATGTTACA 58.494 37.500 0.00 0.00 0.00 2.41
3360 3445 3.305608 GCTATGGCTTTGTGCTTTTCAGT 60.306 43.478 0.00 0.00 42.39 3.41
3375 3460 8.435430 GTGCTTTTCAGTATGGCTTTAAATTTC 58.565 33.333 0.00 0.00 36.16 2.17
3448 3543 9.965748 CCAAGTGTTTGTTTAAATTTAACTGTG 57.034 29.630 10.18 5.21 32.21 3.66
3484 3579 6.426646 ACTCTTCAATCTTGGTCTGTTACT 57.573 37.500 0.00 0.00 0.00 2.24
3494 3589 5.763204 TCTTGGTCTGTTACTTGTTGATTCC 59.237 40.000 0.00 0.00 0.00 3.01
3714 3809 0.179215 GCAGACAACATTTCTCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
3718 3813 1.128692 GACAACATTTCTCGGCGAAGG 59.871 52.381 12.13 0.00 32.21 3.46
3734 3829 3.775202 CGAAGGAAACGAGATGACATCT 58.225 45.455 17.98 17.98 43.70 2.90
3786 3881 3.560636 AAGGAGTTGTTGTACTGCACT 57.439 42.857 0.00 0.00 38.77 4.40
3909 4004 1.264020 TGCGTGCTGTGATCTGTTTTC 59.736 47.619 0.00 0.00 0.00 2.29
3916 4011 6.311445 CGTGCTGTGATCTGTTTTCTATAAGT 59.689 38.462 0.00 0.00 0.00 2.24
3927 4022 7.441157 TCTGTTTTCTATAAGTGTGTTGTCCAG 59.559 37.037 0.00 0.00 0.00 3.86
3966 4061 3.136009 TCAATAGCATGATCAGCCAGG 57.864 47.619 0.09 0.00 0.00 4.45
4082 4180 9.006215 GTAACAAAAGTCAAGTTACATCAACAC 57.994 33.333 9.15 0.00 44.20 3.32
4218 4316 2.752238 CCTGGAGCTCGTCGTCCT 60.752 66.667 7.83 0.00 33.57 3.85
4450 4548 1.623973 GACGGCGAAAAACGGAGGAG 61.624 60.000 16.62 0.00 42.83 3.69
4451 4549 2.388232 CGGCGAAAAACGGAGGAGG 61.388 63.158 0.00 0.00 42.83 4.30
4453 4551 0.392595 GGCGAAAAACGGAGGAGGAT 60.393 55.000 0.00 0.00 42.83 3.24
4454 4552 1.007580 GCGAAAAACGGAGGAGGATC 58.992 55.000 0.00 0.00 42.83 3.36
4457 4555 2.673368 CGAAAAACGGAGGAGGATCAAG 59.327 50.000 0.00 0.00 35.83 3.02
4458 4556 2.789409 AAAACGGAGGAGGATCAAGG 57.211 50.000 0.00 0.00 36.25 3.61
4459 4557 1.952621 AAACGGAGGAGGATCAAGGA 58.047 50.000 0.00 0.00 36.25 3.36
4460 4558 1.490574 AACGGAGGAGGATCAAGGAG 58.509 55.000 0.00 0.00 36.25 3.69
4461 4559 0.631753 ACGGAGGAGGATCAAGGAGA 59.368 55.000 0.00 0.00 36.25 3.71
4462 4560 1.036707 CGGAGGAGGATCAAGGAGAC 58.963 60.000 0.00 0.00 36.25 3.36
4463 4561 1.686428 CGGAGGAGGATCAAGGAGACA 60.686 57.143 0.00 0.00 36.25 3.41
4464 4562 2.038659 GGAGGAGGATCAAGGAGACAG 58.961 57.143 0.00 0.00 36.25 3.51
4465 4563 1.412343 GAGGAGGATCAAGGAGACAGC 59.588 57.143 0.00 0.00 36.25 4.40
4466 4564 0.467804 GGAGGATCAAGGAGACAGCC 59.532 60.000 0.00 0.00 36.25 4.85
4467 4565 0.103937 GAGGATCAAGGAGACAGCCG 59.896 60.000 0.00 0.00 33.17 5.52
4468 4566 1.144936 GGATCAAGGAGACAGCCGG 59.855 63.158 0.00 0.00 0.00 6.13
4497 4595 2.679450 CAATGCAACAGTGGTGAATGG 58.321 47.619 13.73 0.00 0.00 3.16
4498 4596 2.291209 ATGCAACAGTGGTGAATGGA 57.709 45.000 13.73 0.00 0.00 3.41
4499 4597 1.608055 TGCAACAGTGGTGAATGGAG 58.392 50.000 13.73 0.00 0.00 3.86
4500 4598 1.142667 TGCAACAGTGGTGAATGGAGA 59.857 47.619 13.73 0.00 0.00 3.71
4501 4599 2.229792 GCAACAGTGGTGAATGGAGAA 58.770 47.619 13.73 0.00 0.00 2.87
4502 4600 2.821969 GCAACAGTGGTGAATGGAGAAT 59.178 45.455 13.73 0.00 0.00 2.40
4587 4685 3.034635 GGAAGGAGTCCATGAGCTTCTA 58.965 50.000 12.86 0.00 46.97 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 9.996554 ACTCCGATTTGAACATGTTATATATGA 57.003 29.630 11.95 2.86 0.00 2.15
105 106 8.761497 CGTAACTCCGATTTGAACATGTTATAT 58.239 33.333 11.95 5.21 0.00 0.86
106 107 7.223193 CCGTAACTCCGATTTGAACATGTTATA 59.777 37.037 11.95 0.57 0.00 0.98
107 108 6.036735 CCGTAACTCCGATTTGAACATGTTAT 59.963 38.462 11.95 0.98 0.00 1.89
108 109 5.349270 CCGTAACTCCGATTTGAACATGTTA 59.651 40.000 11.95 0.00 0.00 2.41
109 110 4.153475 CCGTAACTCCGATTTGAACATGTT 59.847 41.667 11.78 11.78 0.00 2.71
110 111 3.682858 CCGTAACTCCGATTTGAACATGT 59.317 43.478 0.00 0.00 0.00 3.21
111 112 3.682858 ACCGTAACTCCGATTTGAACATG 59.317 43.478 0.00 0.00 0.00 3.21
112 113 3.934068 ACCGTAACTCCGATTTGAACAT 58.066 40.909 0.00 0.00 0.00 2.71
113 114 3.389925 ACCGTAACTCCGATTTGAACA 57.610 42.857 0.00 0.00 0.00 3.18
114 115 4.737353 AAACCGTAACTCCGATTTGAAC 57.263 40.909 0.00 0.00 0.00 3.18
115 116 6.857777 TTTAAACCGTAACTCCGATTTGAA 57.142 33.333 0.00 0.00 0.00 2.69
116 117 6.705381 TCTTTTAAACCGTAACTCCGATTTGA 59.295 34.615 0.00 0.00 0.00 2.69
117 118 6.890558 TCTTTTAAACCGTAACTCCGATTTG 58.109 36.000 0.00 0.00 0.00 2.32
118 119 7.677454 ATCTTTTAAACCGTAACTCCGATTT 57.323 32.000 0.00 0.00 0.00 2.17
119 120 8.823818 CATATCTTTTAAACCGTAACTCCGATT 58.176 33.333 0.00 0.00 0.00 3.34
120 121 7.440255 CCATATCTTTTAAACCGTAACTCCGAT 59.560 37.037 0.00 0.00 0.00 4.18
121 122 6.757947 CCATATCTTTTAAACCGTAACTCCGA 59.242 38.462 0.00 0.00 0.00 4.55
122 123 6.757947 TCCATATCTTTTAAACCGTAACTCCG 59.242 38.462 0.00 0.00 0.00 4.63
123 124 8.557029 CATCCATATCTTTTAAACCGTAACTCC 58.443 37.037 0.00 0.00 0.00 3.85
124 125 9.321562 TCATCCATATCTTTTAAACCGTAACTC 57.678 33.333 0.00 0.00 0.00 3.01
125 126 9.847224 ATCATCCATATCTTTTAAACCGTAACT 57.153 29.630 0.00 0.00 0.00 2.24
159 160 9.787532 CGGATCATATTTAAGTCAAACAATGTT 57.212 29.630 0.00 0.00 30.29 2.71
160 161 7.915397 GCGGATCATATTTAAGTCAAACAATGT 59.085 33.333 0.00 0.00 30.29 2.71
161 162 7.112009 CGCGGATCATATTTAAGTCAAACAATG 59.888 37.037 0.00 0.00 0.00 2.82
162 163 7.132213 CGCGGATCATATTTAAGTCAAACAAT 58.868 34.615 0.00 0.00 0.00 2.71
163 164 6.457663 CCGCGGATCATATTTAAGTCAAACAA 60.458 38.462 24.07 0.00 0.00 2.83
164 165 5.007234 CCGCGGATCATATTTAAGTCAAACA 59.993 40.000 24.07 0.00 0.00 2.83
165 166 5.235616 TCCGCGGATCATATTTAAGTCAAAC 59.764 40.000 27.28 0.00 0.00 2.93
166 167 5.361427 TCCGCGGATCATATTTAAGTCAAA 58.639 37.500 27.28 0.00 0.00 2.69
167 168 4.951254 TCCGCGGATCATATTTAAGTCAA 58.049 39.130 27.28 0.00 0.00 3.18
168 169 4.594123 TCCGCGGATCATATTTAAGTCA 57.406 40.909 27.28 0.00 0.00 3.41
169 170 5.168569 TCATCCGCGGATCATATTTAAGTC 58.831 41.667 37.10 0.00 31.62 3.01
170 171 5.147330 TCATCCGCGGATCATATTTAAGT 57.853 39.130 37.10 10.97 31.62 2.24
171 172 6.668541 ATTCATCCGCGGATCATATTTAAG 57.331 37.500 37.10 22.01 31.62 1.85
172 173 7.065324 GGTAATTCATCCGCGGATCATATTTAA 59.935 37.037 37.10 20.67 31.62 1.52
173 174 6.537301 GGTAATTCATCCGCGGATCATATTTA 59.463 38.462 37.10 24.37 31.62 1.40
174 175 5.354234 GGTAATTCATCCGCGGATCATATTT 59.646 40.000 37.10 25.24 31.62 1.40
175 176 4.876107 GGTAATTCATCCGCGGATCATATT 59.124 41.667 37.10 31.30 31.62 1.28
176 177 4.162320 AGGTAATTCATCCGCGGATCATAT 59.838 41.667 37.10 25.16 31.62 1.78
177 178 3.513912 AGGTAATTCATCCGCGGATCATA 59.486 43.478 37.10 24.11 31.62 2.15
178 179 2.303022 AGGTAATTCATCCGCGGATCAT 59.697 45.455 37.10 27.22 31.62 2.45
179 180 1.691976 AGGTAATTCATCCGCGGATCA 59.308 47.619 37.10 24.89 31.62 2.92
180 181 2.457366 AGGTAATTCATCCGCGGATC 57.543 50.000 37.10 23.80 31.62 3.36
181 182 4.345859 TTTAGGTAATTCATCCGCGGAT 57.654 40.909 34.60 34.60 34.81 4.18
182 183 3.823281 TTTAGGTAATTCATCCGCGGA 57.177 42.857 33.12 33.12 0.00 5.54
183 184 3.623960 TGTTTTAGGTAATTCATCCGCGG 59.376 43.478 22.12 22.12 0.00 6.46
184 185 4.868450 TGTTTTAGGTAATTCATCCGCG 57.132 40.909 0.00 0.00 0.00 6.46
185 186 6.371809 TGATGTTTTAGGTAATTCATCCGC 57.628 37.500 0.00 0.00 33.20 5.54
186 187 6.017109 CCCTGATGTTTTAGGTAATTCATCCG 60.017 42.308 0.00 0.00 33.20 4.18
187 188 6.265422 CCCCTGATGTTTTAGGTAATTCATCC 59.735 42.308 0.00 0.00 33.20 3.51
188 189 6.265422 CCCCCTGATGTTTTAGGTAATTCATC 59.735 42.308 0.00 0.00 34.28 2.92
189 190 6.136155 CCCCCTGATGTTTTAGGTAATTCAT 58.864 40.000 0.00 0.00 31.99 2.57
190 191 5.515106 CCCCCTGATGTTTTAGGTAATTCA 58.485 41.667 0.00 0.00 31.99 2.57
221 222 6.641723 CACCCGAACCGTTATTTTACATTTTT 59.358 34.615 0.00 0.00 0.00 1.94
222 223 6.151004 CACCCGAACCGTTATTTTACATTTT 58.849 36.000 0.00 0.00 0.00 1.82
223 224 5.241285 ACACCCGAACCGTTATTTTACATTT 59.759 36.000 0.00 0.00 0.00 2.32
224 225 4.761227 ACACCCGAACCGTTATTTTACATT 59.239 37.500 0.00 0.00 0.00 2.71
225 226 4.154556 CACACCCGAACCGTTATTTTACAT 59.845 41.667 0.00 0.00 0.00 2.29
226 227 3.497640 CACACCCGAACCGTTATTTTACA 59.502 43.478 0.00 0.00 0.00 2.41
227 228 3.745458 TCACACCCGAACCGTTATTTTAC 59.255 43.478 0.00 0.00 0.00 2.01
228 229 3.745458 GTCACACCCGAACCGTTATTTTA 59.255 43.478 0.00 0.00 0.00 1.52
229 230 2.549329 GTCACACCCGAACCGTTATTTT 59.451 45.455 0.00 0.00 0.00 1.82
230 231 2.145536 GTCACACCCGAACCGTTATTT 58.854 47.619 0.00 0.00 0.00 1.40
231 232 1.345415 AGTCACACCCGAACCGTTATT 59.655 47.619 0.00 0.00 0.00 1.40
232 233 0.971386 AGTCACACCCGAACCGTTAT 59.029 50.000 0.00 0.00 0.00 1.89
233 234 0.752054 AAGTCACACCCGAACCGTTA 59.248 50.000 0.00 0.00 0.00 3.18
234 235 0.752054 TAAGTCACACCCGAACCGTT 59.248 50.000 0.00 0.00 0.00 4.44
235 236 0.752054 TTAAGTCACACCCGAACCGT 59.248 50.000 0.00 0.00 0.00 4.83
236 237 1.868469 TTTAAGTCACACCCGAACCG 58.132 50.000 0.00 0.00 0.00 4.44
237 238 2.745821 GGATTTAAGTCACACCCGAACC 59.254 50.000 0.03 0.00 0.00 3.62
238 239 3.404899 TGGATTTAAGTCACACCCGAAC 58.595 45.455 0.03 0.00 0.00 3.95
239 240 3.325425 TCTGGATTTAAGTCACACCCGAA 59.675 43.478 0.03 0.00 0.00 4.30
240 241 2.901192 TCTGGATTTAAGTCACACCCGA 59.099 45.455 0.03 0.00 0.00 5.14
241 242 3.000727 GTCTGGATTTAAGTCACACCCG 58.999 50.000 0.03 0.00 0.00 5.28
242 243 4.003648 CAGTCTGGATTTAAGTCACACCC 58.996 47.826 0.03 0.00 0.00 4.61
243 244 3.437049 GCAGTCTGGATTTAAGTCACACC 59.563 47.826 1.14 0.00 0.00 4.16
244 245 3.123621 CGCAGTCTGGATTTAAGTCACAC 59.876 47.826 1.14 0.00 0.00 3.82
245 246 3.325870 CGCAGTCTGGATTTAAGTCACA 58.674 45.455 1.14 0.00 0.00 3.58
246 247 2.673368 CCGCAGTCTGGATTTAAGTCAC 59.327 50.000 1.14 0.00 0.00 3.67
247 248 2.354704 CCCGCAGTCTGGATTTAAGTCA 60.355 50.000 1.14 0.00 0.00 3.41
248 249 2.280628 CCCGCAGTCTGGATTTAAGTC 58.719 52.381 1.14 0.00 0.00 3.01
249 250 1.628846 ACCCGCAGTCTGGATTTAAGT 59.371 47.619 1.14 0.00 0.00 2.24
250 251 2.403252 ACCCGCAGTCTGGATTTAAG 57.597 50.000 1.14 0.00 0.00 1.85
251 252 2.039216 TCAACCCGCAGTCTGGATTTAA 59.961 45.455 1.14 0.00 0.00 1.52
252 253 1.626321 TCAACCCGCAGTCTGGATTTA 59.374 47.619 1.14 0.00 0.00 1.40
253 254 0.400213 TCAACCCGCAGTCTGGATTT 59.600 50.000 1.14 0.00 0.00 2.17
254 255 0.620556 ATCAACCCGCAGTCTGGATT 59.379 50.000 1.14 0.00 0.00 3.01
255 256 0.620556 AATCAACCCGCAGTCTGGAT 59.379 50.000 1.14 0.00 0.00 3.41
256 257 0.400213 AAATCAACCCGCAGTCTGGA 59.600 50.000 1.14 0.00 0.00 3.86
257 258 1.247567 AAAATCAACCCGCAGTCTGG 58.752 50.000 1.14 0.00 0.00 3.86
258 259 3.252215 TGTTAAAATCAACCCGCAGTCTG 59.748 43.478 0.00 0.00 0.00 3.51
259 260 3.482436 TGTTAAAATCAACCCGCAGTCT 58.518 40.909 0.00 0.00 0.00 3.24
260 261 3.907894 TGTTAAAATCAACCCGCAGTC 57.092 42.857 0.00 0.00 0.00 3.51
261 262 4.657436 TTTGTTAAAATCAACCCGCAGT 57.343 36.364 0.00 0.00 0.00 4.40
262 263 4.806247 TGTTTTGTTAAAATCAACCCGCAG 59.194 37.500 0.00 0.00 32.22 5.18
263 264 4.567159 GTGTTTTGTTAAAATCAACCCGCA 59.433 37.500 0.00 0.00 32.22 5.69
264 265 4.567159 TGTGTTTTGTTAAAATCAACCCGC 59.433 37.500 0.00 0.00 32.22 6.13
265 266 5.233263 CCTGTGTTTTGTTAAAATCAACCCG 59.767 40.000 0.00 0.00 32.22 5.28
266 267 5.525745 CCCTGTGTTTTGTTAAAATCAACCC 59.474 40.000 0.00 0.00 32.22 4.11
267 268 6.256975 GTCCCTGTGTTTTGTTAAAATCAACC 59.743 38.462 0.00 0.00 32.22 3.77
268 269 7.039270 AGTCCCTGTGTTTTGTTAAAATCAAC 58.961 34.615 0.00 0.00 32.22 3.18
269 270 7.176589 AGTCCCTGTGTTTTGTTAAAATCAA 57.823 32.000 0.00 0.00 32.22 2.57
270 271 6.783708 AGTCCCTGTGTTTTGTTAAAATCA 57.216 33.333 0.00 0.00 32.22 2.57
271 272 8.387354 CAAAAGTCCCTGTGTTTTGTTAAAATC 58.613 33.333 0.00 0.00 36.72 2.17
272 273 7.880713 ACAAAAGTCCCTGTGTTTTGTTAAAAT 59.119 29.630 6.60 0.00 46.98 1.82
273 274 7.171678 CACAAAAGTCCCTGTGTTTTGTTAAAA 59.828 33.333 9.16 0.00 46.98 1.52
274 275 6.647067 CACAAAAGTCCCTGTGTTTTGTTAAA 59.353 34.615 9.16 0.00 46.98 1.52
275 276 6.159988 CACAAAAGTCCCTGTGTTTTGTTAA 58.840 36.000 9.16 0.00 46.98 2.01
276 277 5.715070 CACAAAAGTCCCTGTGTTTTGTTA 58.285 37.500 9.16 0.00 46.98 2.41
277 278 4.565022 CACAAAAGTCCCTGTGTTTTGTT 58.435 39.130 9.16 0.00 46.98 2.83
317 318 9.476202 GCAGTCCTGTTTTAAGTTAAAATGAAT 57.524 29.630 20.66 14.59 39.56 2.57
318 319 7.646130 CGCAGTCCTGTTTTAAGTTAAAATGAA 59.354 33.333 20.66 10.87 39.56 2.57
319 320 7.136119 CGCAGTCCTGTTTTAAGTTAAAATGA 58.864 34.615 20.66 15.22 39.56 2.57
320 321 6.362283 CCGCAGTCCTGTTTTAAGTTAAAATG 59.638 38.462 20.66 15.15 39.56 2.32
321 322 6.443792 CCGCAGTCCTGTTTTAAGTTAAAAT 58.556 36.000 20.66 4.38 39.56 1.82
322 323 5.221087 CCCGCAGTCCTGTTTTAAGTTAAAA 60.221 40.000 15.29 15.29 35.45 1.52
323 324 4.276431 CCCGCAGTCCTGTTTTAAGTTAAA 59.724 41.667 3.88 3.88 0.00 1.52
324 325 3.816523 CCCGCAGTCCTGTTTTAAGTTAA 59.183 43.478 0.00 0.00 0.00 2.01
325 326 3.404899 CCCGCAGTCCTGTTTTAAGTTA 58.595 45.455 0.00 0.00 0.00 2.24
326 327 2.227194 CCCGCAGTCCTGTTTTAAGTT 58.773 47.619 0.00 0.00 0.00 2.66
327 328 1.544759 CCCCGCAGTCCTGTTTTAAGT 60.545 52.381 0.00 0.00 0.00 2.24
328 329 1.165270 CCCCGCAGTCCTGTTTTAAG 58.835 55.000 0.00 0.00 0.00 1.85
329 330 0.475044 ACCCCGCAGTCCTGTTTTAA 59.525 50.000 0.00 0.00 0.00 1.52
330 331 0.250553 CACCCCGCAGTCCTGTTTTA 60.251 55.000 0.00 0.00 0.00 1.52
331 332 1.528309 CACCCCGCAGTCCTGTTTT 60.528 57.895 0.00 0.00 0.00 2.43
332 333 1.990160 TTCACCCCGCAGTCCTGTTT 61.990 55.000 0.00 0.00 0.00 2.83
333 334 1.779061 ATTCACCCCGCAGTCCTGTT 61.779 55.000 0.00 0.00 0.00 3.16
334 335 1.779061 AATTCACCCCGCAGTCCTGT 61.779 55.000 0.00 0.00 0.00 4.00
335 336 1.002134 AATTCACCCCGCAGTCCTG 60.002 57.895 0.00 0.00 0.00 3.86
336 337 1.201429 AGAATTCACCCCGCAGTCCT 61.201 55.000 8.44 0.00 0.00 3.85
337 338 0.744771 GAGAATTCACCCCGCAGTCC 60.745 60.000 8.44 0.00 0.00 3.85
338 339 0.250513 AGAGAATTCACCCCGCAGTC 59.749 55.000 8.44 0.00 0.00 3.51
339 340 1.568504 TAGAGAATTCACCCCGCAGT 58.431 50.000 8.44 0.00 0.00 4.40
340 341 2.691409 TTAGAGAATTCACCCCGCAG 57.309 50.000 8.44 0.00 0.00 5.18
341 342 3.426787 TTTTAGAGAATTCACCCCGCA 57.573 42.857 8.44 0.00 0.00 5.69
342 343 5.365619 TCTATTTTAGAGAATTCACCCCGC 58.634 41.667 8.44 0.00 0.00 6.13
343 344 6.483640 CCTTCTATTTTAGAGAATTCACCCCG 59.516 42.308 8.44 0.00 35.96 5.73
344 345 7.499563 GTCCTTCTATTTTAGAGAATTCACCCC 59.500 40.741 8.44 0.00 35.96 4.95
345 346 8.268605 AGTCCTTCTATTTTAGAGAATTCACCC 58.731 37.037 8.44 0.00 35.96 4.61
346 347 9.674068 AAGTCCTTCTATTTTAGAGAATTCACC 57.326 33.333 8.44 0.00 35.96 4.02
378 379 4.220382 TCTTTCATCCGTCATGGCATTTTT 59.780 37.500 0.00 0.00 37.80 1.94
379 380 3.763360 TCTTTCATCCGTCATGGCATTTT 59.237 39.130 0.00 0.00 37.80 1.82
380 381 3.355378 TCTTTCATCCGTCATGGCATTT 58.645 40.909 0.00 0.00 37.80 2.32
381 382 3.003394 TCTTTCATCCGTCATGGCATT 57.997 42.857 0.00 0.00 37.80 3.56
382 383 2.715749 TCTTTCATCCGTCATGGCAT 57.284 45.000 0.00 0.00 37.80 4.40
383 384 2.487762 GTTTCTTTCATCCGTCATGGCA 59.512 45.455 0.00 0.00 37.80 4.92
384 385 2.159379 GGTTTCTTTCATCCGTCATGGC 60.159 50.000 0.00 0.00 37.80 4.40
385 386 3.081061 TGGTTTCTTTCATCCGTCATGG 58.919 45.455 0.00 0.00 40.09 3.66
386 387 4.764679 TTGGTTTCTTTCATCCGTCATG 57.235 40.909 0.00 0.00 0.00 3.07
387 388 5.982890 ATTTGGTTTCTTTCATCCGTCAT 57.017 34.783 0.00 0.00 0.00 3.06
388 389 5.782893 AATTTGGTTTCTTTCATCCGTCA 57.217 34.783 0.00 0.00 0.00 4.35
389 390 5.107491 GCAAATTTGGTTTCTTTCATCCGTC 60.107 40.000 19.47 0.00 0.00 4.79
390 391 4.749598 GCAAATTTGGTTTCTTTCATCCGT 59.250 37.500 19.47 0.00 0.00 4.69
391 392 4.990426 AGCAAATTTGGTTTCTTTCATCCG 59.010 37.500 16.92 0.00 34.89 4.18
392 393 6.866010 AAGCAAATTTGGTTTCTTTCATCC 57.134 33.333 25.81 3.12 45.64 3.51
453 454 9.942850 TTCTCTCATTTTCCTTTTTCAGTTTTT 57.057 25.926 0.00 0.00 0.00 1.94
454 455 9.942850 TTTCTCTCATTTTCCTTTTTCAGTTTT 57.057 25.926 0.00 0.00 0.00 2.43
455 456 9.942850 TTTTCTCTCATTTTCCTTTTTCAGTTT 57.057 25.926 0.00 0.00 0.00 2.66
456 457 9.591792 CTTTTCTCTCATTTTCCTTTTTCAGTT 57.408 29.630 0.00 0.00 0.00 3.16
457 458 8.971073 TCTTTTCTCTCATTTTCCTTTTTCAGT 58.029 29.630 0.00 0.00 0.00 3.41
458 459 9.807649 TTCTTTTCTCTCATTTTCCTTTTTCAG 57.192 29.630 0.00 0.00 0.00 3.02
502 503 8.596271 TTCTTTTCTTTCTTTGTTCCGTTTTT 57.404 26.923 0.00 0.00 0.00 1.94
503 504 8.596271 TTTCTTTTCTTTCTTTGTTCCGTTTT 57.404 26.923 0.00 0.00 0.00 2.43
504 505 8.596271 TTTTCTTTTCTTTCTTTGTTCCGTTT 57.404 26.923 0.00 0.00 0.00 3.60
505 506 8.596271 TTTTTCTTTTCTTTCTTTGTTCCGTT 57.404 26.923 0.00 0.00 0.00 4.44
594 595 7.455891 TCTAGAAGGTTCCTTAATCGGTTTTT 58.544 34.615 3.93 0.00 0.00 1.94
595 596 7.012661 TCTAGAAGGTTCCTTAATCGGTTTT 57.987 36.000 3.93 0.00 0.00 2.43
596 597 6.616237 TCTAGAAGGTTCCTTAATCGGTTT 57.384 37.500 3.93 0.00 0.00 3.27
597 598 6.212993 ACTTCTAGAAGGTTCCTTAATCGGTT 59.787 38.462 30.98 6.39 42.53 4.44
598 599 5.720520 ACTTCTAGAAGGTTCCTTAATCGGT 59.279 40.000 30.98 7.75 42.53 4.69
599 600 6.223351 ACTTCTAGAAGGTTCCTTAATCGG 57.777 41.667 30.98 7.16 42.53 4.18
610 611 6.659824 TGGTTTTGAGAAACTTCTAGAAGGT 58.340 36.000 30.98 25.19 43.68 3.50
611 612 6.205658 CCTGGTTTTGAGAAACTTCTAGAAGG 59.794 42.308 30.98 16.28 43.68 3.46
612 613 6.992715 TCCTGGTTTTGAGAAACTTCTAGAAG 59.007 38.462 27.41 27.41 43.68 2.85
613 614 6.895782 TCCTGGTTTTGAGAAACTTCTAGAA 58.104 36.000 4.81 4.81 43.68 2.10
614 615 6.494666 TCCTGGTTTTGAGAAACTTCTAGA 57.505 37.500 0.00 0.00 43.68 2.43
615 616 7.568199 TTTCCTGGTTTTGAGAAACTTCTAG 57.432 36.000 0.00 0.00 43.68 2.43
616 617 7.948034 TTTTCCTGGTTTTGAGAAACTTCTA 57.052 32.000 0.00 0.00 43.68 2.10
617 618 6.850752 TTTTCCTGGTTTTGAGAAACTTCT 57.149 33.333 0.00 0.00 43.68 2.85
618 619 6.312918 GGTTTTTCCTGGTTTTGAGAAACTTC 59.687 38.462 0.00 0.00 43.68 3.01
619 620 6.170506 GGTTTTTCCTGGTTTTGAGAAACTT 58.829 36.000 0.00 0.00 43.68 2.66
620 621 5.247337 TGGTTTTTCCTGGTTTTGAGAAACT 59.753 36.000 0.00 0.00 39.93 2.66
621 622 5.483811 TGGTTTTTCCTGGTTTTGAGAAAC 58.516 37.500 0.00 0.00 39.64 2.78
622 623 5.729510 CTGGTTTTTCCTGGTTTTGAGAAA 58.270 37.500 0.00 0.00 37.07 2.52
623 624 4.382577 GCTGGTTTTTCCTGGTTTTGAGAA 60.383 41.667 0.00 0.00 35.96 2.87
624 625 3.132111 GCTGGTTTTTCCTGGTTTTGAGA 59.868 43.478 0.00 0.00 35.96 3.27
625 626 3.132824 AGCTGGTTTTTCCTGGTTTTGAG 59.867 43.478 0.00 0.00 41.84 3.02
626 627 3.103742 AGCTGGTTTTTCCTGGTTTTGA 58.896 40.909 0.00 0.00 41.84 2.69
627 628 3.197265 CAGCTGGTTTTTCCTGGTTTTG 58.803 45.455 5.57 0.00 42.47 2.44
628 629 2.170397 CCAGCTGGTTTTTCCTGGTTTT 59.830 45.455 25.53 0.00 42.47 2.43
629 630 1.762370 CCAGCTGGTTTTTCCTGGTTT 59.238 47.619 25.53 0.00 42.47 3.27
630 631 1.413118 CCAGCTGGTTTTTCCTGGTT 58.587 50.000 25.53 0.00 42.47 3.67
631 632 0.469892 CCCAGCTGGTTTTTCCTGGT 60.470 55.000 30.63 0.00 42.55 4.00
632 633 0.178964 TCCCAGCTGGTTTTTCCTGG 60.179 55.000 30.63 12.45 43.47 4.45
633 634 1.341209 GTTCCCAGCTGGTTTTTCCTG 59.659 52.381 30.63 13.19 38.06 3.86
634 635 1.217942 AGTTCCCAGCTGGTTTTTCCT 59.782 47.619 30.63 14.19 37.07 3.36
635 636 1.704641 AGTTCCCAGCTGGTTTTTCC 58.295 50.000 30.63 12.21 34.77 3.13
636 637 2.959030 AGAAGTTCCCAGCTGGTTTTTC 59.041 45.455 30.63 24.43 34.77 2.29
637 638 3.032265 AGAAGTTCCCAGCTGGTTTTT 57.968 42.857 30.63 18.45 34.77 1.94
638 639 2.755952 AGAAGTTCCCAGCTGGTTTT 57.244 45.000 30.63 18.11 34.77 2.43
639 640 2.979678 TCTAGAAGTTCCCAGCTGGTTT 59.020 45.455 30.63 18.45 34.77 3.27
640 641 2.621070 TCTAGAAGTTCCCAGCTGGTT 58.379 47.619 30.63 18.54 34.77 3.67
641 642 2.327325 TCTAGAAGTTCCCAGCTGGT 57.673 50.000 30.63 12.59 34.77 4.00
642 643 2.093235 CCTTCTAGAAGTTCCCAGCTGG 60.093 54.545 26.87 26.87 36.72 4.85
643 644 2.569404 ACCTTCTAGAAGTTCCCAGCTG 59.431 50.000 26.83 6.78 36.72 4.24
644 645 2.909217 ACCTTCTAGAAGTTCCCAGCT 58.091 47.619 26.83 3.53 36.72 4.24
645 646 3.601435 GAACCTTCTAGAAGTTCCCAGC 58.399 50.000 26.83 8.72 36.72 4.85
646 647 4.209307 GGAACCTTCTAGAAGTTCCCAG 57.791 50.000 31.67 20.56 39.69 4.45
663 664 0.898326 AGGCCATCGGTTTTGGGAAC 60.898 55.000 5.01 0.00 34.66 3.62
664 665 0.699399 TAGGCCATCGGTTTTGGGAA 59.301 50.000 5.01 0.00 34.66 3.97
665 666 0.254747 CTAGGCCATCGGTTTTGGGA 59.745 55.000 5.01 0.00 34.66 4.37
666 667 0.751643 CCTAGGCCATCGGTTTTGGG 60.752 60.000 5.01 0.00 34.66 4.12
667 668 0.254747 TCCTAGGCCATCGGTTTTGG 59.745 55.000 5.01 0.00 37.31 3.28
668 669 1.743394 GTTCCTAGGCCATCGGTTTTG 59.257 52.381 5.01 0.00 0.00 2.44
669 670 1.677820 CGTTCCTAGGCCATCGGTTTT 60.678 52.381 5.01 0.00 0.00 2.43
670 671 0.107848 CGTTCCTAGGCCATCGGTTT 60.108 55.000 5.01 0.00 0.00 3.27
671 672 1.520666 CGTTCCTAGGCCATCGGTT 59.479 57.895 5.01 0.00 0.00 4.44
672 673 2.432300 CCGTTCCTAGGCCATCGGT 61.432 63.158 5.01 0.00 34.38 4.69
673 674 1.968050 AACCGTTCCTAGGCCATCGG 61.968 60.000 22.42 22.42 42.94 4.18
674 675 0.748450 TAACCGTTCCTAGGCCATCG 59.252 55.000 5.01 5.88 0.00 3.84
675 676 2.994186 TTAACCGTTCCTAGGCCATC 57.006 50.000 5.01 0.00 0.00 3.51
676 677 3.551846 CATTTAACCGTTCCTAGGCCAT 58.448 45.455 5.01 0.00 0.00 4.40
677 678 2.356330 CCATTTAACCGTTCCTAGGCCA 60.356 50.000 5.01 0.00 0.00 5.36
678 679 2.294979 CCATTTAACCGTTCCTAGGCC 58.705 52.381 2.96 0.00 0.00 5.19
679 680 2.294979 CCCATTTAACCGTTCCTAGGC 58.705 52.381 2.96 0.00 0.00 3.93
680 681 2.294979 GCCCATTTAACCGTTCCTAGG 58.705 52.381 0.82 0.82 0.00 3.02
681 682 2.294979 GGCCCATTTAACCGTTCCTAG 58.705 52.381 0.00 0.00 0.00 3.02
682 683 1.407162 CGGCCCATTTAACCGTTCCTA 60.407 52.381 0.00 0.00 42.01 2.94
683 684 0.678684 CGGCCCATTTAACCGTTCCT 60.679 55.000 0.00 0.00 42.01 3.36
684 685 1.659622 CCGGCCCATTTAACCGTTCC 61.660 60.000 0.00 0.00 45.49 3.62
685 686 1.804598 CCGGCCCATTTAACCGTTC 59.195 57.895 0.00 0.00 45.49 3.95
686 687 2.344981 GCCGGCCCATTTAACCGTT 61.345 57.895 18.11 0.00 45.49 4.44
687 688 2.752640 GCCGGCCCATTTAACCGT 60.753 61.111 18.11 0.00 45.49 4.83
688 689 3.523668 GGCCGGCCCATTTAACCG 61.524 66.667 36.64 0.00 46.50 4.44
689 690 2.043349 AGGCCGGCCCATTTAACC 60.043 61.111 41.72 14.06 36.58 2.85
690 691 1.254975 AACAGGCCGGCCCATTTAAC 61.255 55.000 41.72 14.89 36.58 2.01
691 692 1.077625 AACAGGCCGGCCCATTTAA 59.922 52.632 41.72 0.00 36.58 1.52
692 693 1.680651 CAACAGGCCGGCCCATTTA 60.681 57.895 41.72 0.00 36.58 1.40
693 694 2.996734 CAACAGGCCGGCCCATTT 60.997 61.111 41.72 27.96 36.58 2.32
704 705 3.782244 GAGCAGCGACGCAACAGG 61.782 66.667 23.70 6.84 0.00 4.00
705 706 3.008240 CTGAGCAGCGACGCAACAG 62.008 63.158 23.70 19.08 34.28 3.16
706 707 3.037833 CTGAGCAGCGACGCAACA 61.038 61.111 23.70 14.14 0.00 3.33
707 708 2.734723 TCTGAGCAGCGACGCAAC 60.735 61.111 23.70 13.35 0.00 4.17
708 709 2.734723 GTCTGAGCAGCGACGCAA 60.735 61.111 23.70 0.80 0.00 4.85
712 713 2.878520 GAGCGTCTGAGCAGCGAC 60.879 66.667 15.02 8.53 40.15 5.19
713 714 4.121669 GGAGCGTCTGAGCAGCGA 62.122 66.667 15.02 0.00 40.15 4.93
716 717 3.753434 ACGGGAGCGTCTGAGCAG 61.753 66.667 0.00 0.00 40.15 4.24
717 718 4.056125 CACGGGAGCGTCTGAGCA 62.056 66.667 0.00 0.00 40.15 4.26
718 719 4.057428 ACACGGGAGCGTCTGAGC 62.057 66.667 0.00 0.00 37.41 4.26
719 720 2.126307 CACACGGGAGCGTCTGAG 60.126 66.667 0.00 0.00 0.00 3.35
720 721 4.357947 GCACACGGGAGCGTCTGA 62.358 66.667 0.00 0.00 0.00 3.27
726 727 3.414700 CACTTCGCACACGGGAGC 61.415 66.667 0.00 0.00 40.63 4.70
727 728 3.414700 GCACTTCGCACACGGGAG 61.415 66.667 0.00 0.00 41.79 4.30
728 729 4.980805 GGCACTTCGCACACGGGA 62.981 66.667 0.00 0.00 45.17 5.14
735 736 4.927782 AACTGCCGGCACTTCGCA 62.928 61.111 29.03 1.63 45.17 5.10
736 737 3.660111 AAACTGCCGGCACTTCGC 61.660 61.111 29.03 0.00 41.28 4.70
737 738 2.250939 TCAAACTGCCGGCACTTCG 61.251 57.895 29.03 19.20 0.00 3.79
738 739 1.282875 GTCAAACTGCCGGCACTTC 59.717 57.895 29.03 7.63 0.00 3.01
739 740 2.542907 CGTCAAACTGCCGGCACTT 61.543 57.895 29.03 20.86 0.00 3.16
740 741 2.972505 CGTCAAACTGCCGGCACT 60.973 61.111 29.03 15.07 0.00 4.40
741 742 4.683334 GCGTCAAACTGCCGGCAC 62.683 66.667 29.03 14.31 0.00 5.01
743 744 4.389576 CTGCGTCAAACTGCCGGC 62.390 66.667 22.73 22.73 0.00 6.13
744 745 4.389576 GCTGCGTCAAACTGCCGG 62.390 66.667 0.00 0.00 0.00 6.13
745 746 4.724697 CGCTGCGTCAAACTGCCG 62.725 66.667 14.93 0.00 0.00 5.69
746 747 3.300667 CTCGCTGCGTCAAACTGCC 62.301 63.158 22.48 0.00 0.00 4.85
747 748 2.171940 CTCGCTGCGTCAAACTGC 59.828 61.111 22.48 0.00 0.00 4.40
748 749 2.171940 GCTCGCTGCGTCAAACTG 59.828 61.111 22.48 5.96 0.00 3.16
757 758 2.325857 CTATTTGCCGCTCGCTGC 59.674 61.111 0.00 0.00 38.78 5.25
758 759 0.882042 ATCCTATTTGCCGCTCGCTG 60.882 55.000 0.00 0.00 38.78 5.18
759 760 0.179045 AATCCTATTTGCCGCTCGCT 60.179 50.000 0.00 0.00 38.78 4.93
760 761 0.663153 AAATCCTATTTGCCGCTCGC 59.337 50.000 0.00 0.00 38.31 5.03
761 762 2.287009 GGAAAATCCTATTTGCCGCTCG 60.287 50.000 0.00 0.00 32.53 5.03
762 763 2.034685 GGGAAAATCCTATTTGCCGCTC 59.965 50.000 3.78 0.00 40.31 5.03
763 764 2.031870 GGGAAAATCCTATTTGCCGCT 58.968 47.619 3.78 0.00 40.31 5.52
764 765 2.509052 GGGAAAATCCTATTTGCCGC 57.491 50.000 3.78 0.00 40.31 6.53
767 768 6.393171 GCATATGAGGGAAAATCCTATTTGC 58.607 40.000 6.97 3.44 37.25 3.68
768 769 6.723052 AGGCATATGAGGGAAAATCCTATTTG 59.277 38.462 6.97 0.00 37.25 2.32
769 770 6.867723 AGGCATATGAGGGAAAATCCTATTT 58.132 36.000 6.97 0.00 37.25 1.40
770 771 6.474918 AGGCATATGAGGGAAAATCCTATT 57.525 37.500 6.97 0.00 37.25 1.73
771 772 5.338708 CGAGGCATATGAGGGAAAATCCTAT 60.339 44.000 6.97 0.00 37.25 2.57
772 773 4.020218 CGAGGCATATGAGGGAAAATCCTA 60.020 45.833 6.97 0.00 37.25 2.94
773 774 3.244700 CGAGGCATATGAGGGAAAATCCT 60.245 47.826 6.97 0.00 40.43 3.24
774 775 3.077359 CGAGGCATATGAGGGAAAATCC 58.923 50.000 6.97 0.00 35.23 3.01
775 776 3.077359 CCGAGGCATATGAGGGAAAATC 58.923 50.000 6.97 0.00 0.00 2.17
776 777 2.711009 TCCGAGGCATATGAGGGAAAAT 59.289 45.455 6.97 0.00 0.00 1.82
777 778 2.104792 CTCCGAGGCATATGAGGGAAAA 59.895 50.000 6.97 0.00 0.00 2.29
778 779 1.694150 CTCCGAGGCATATGAGGGAAA 59.306 52.381 6.97 0.00 0.00 3.13
779 780 1.342074 CTCCGAGGCATATGAGGGAA 58.658 55.000 6.97 0.00 0.00 3.97
780 781 0.542938 CCTCCGAGGCATATGAGGGA 60.543 60.000 6.97 5.68 40.59 4.20
781 782 0.542938 TCCTCCGAGGCATATGAGGG 60.543 60.000 9.87 1.24 43.72 4.30
782 783 0.894141 CTCCTCCGAGGCATATGAGG 59.106 60.000 9.87 8.90 44.69 3.86
783 784 0.246086 GCTCCTCCGAGGCATATGAG 59.754 60.000 9.87 1.99 36.55 2.90
784 785 0.178950 AGCTCCTCCGAGGCATATGA 60.179 55.000 9.87 0.00 36.55 2.15
872 874 0.373716 GCCGTATTTGCGACTCCAAG 59.626 55.000 0.00 0.00 0.00 3.61
948 950 1.527611 TGAGTGTCGTGGACCGTCT 60.528 57.895 0.00 0.00 37.94 4.18
1027 1032 1.962822 CTCGCCTTGCTGCTGTGAA 60.963 57.895 0.00 0.00 0.00 3.18
1055 1060 1.076632 CGGAGGAGTACAGAGGCCT 60.077 63.158 3.86 3.86 0.00 5.19
1149 1163 0.617249 CCCTGGAGGAGAAGAGCAGT 60.617 60.000 0.00 0.00 38.24 4.40
1245 1259 4.044698 ACAAGGAGCTTTAAAGAAGGGGAT 59.955 41.667 19.48 0.00 0.00 3.85
1248 1262 3.437049 CGACAAGGAGCTTTAAAGAAGGG 59.563 47.826 19.48 5.17 0.00 3.95
1283 1297 7.676338 GCAGAAACTATAGAAACGCAAATGCTA 60.676 37.037 6.78 0.00 39.32 3.49
1333 1347 4.510038 ACCATGCTTGAACTTGACAATC 57.490 40.909 0.22 0.00 0.00 2.67
1336 1350 3.023119 ACAACCATGCTTGAACTTGACA 58.977 40.909 7.75 0.00 0.00 3.58
1374 1388 1.343681 ACTACTCCTATTTCGGGGCCA 60.344 52.381 4.39 0.00 0.00 5.36
1416 1430 0.179076 ACATCAGATCATGCGCCGAA 60.179 50.000 4.18 0.00 0.00 4.30
1417 1431 0.179076 AACATCAGATCATGCGCCGA 60.179 50.000 4.18 0.91 0.00 5.54
1468 1486 6.964807 TTTGATAGATAAGCATGTTGGCAT 57.035 33.333 0.00 0.00 35.83 4.40
1469 1487 6.772360 TTTTGATAGATAAGCATGTTGGCA 57.228 33.333 0.00 0.00 35.83 4.92
1470 1488 6.199719 GCTTTTTGATAGATAAGCATGTTGGC 59.800 38.462 0.00 0.00 41.89 4.52
1739 1760 6.748658 CCTCGTGTATCGTTGTAACAGATAAA 59.251 38.462 9.29 4.37 40.80 1.40
1820 1845 3.133014 CGCCTCCACTCGGATCAT 58.867 61.111 0.00 0.00 41.79 2.45
1895 1920 0.109597 CGCCAAGCATGAACAAGGAC 60.110 55.000 0.00 0.00 0.00 3.85
1910 1935 1.069204 GATGCTATGTTCTCTCCGCCA 59.931 52.381 0.00 0.00 0.00 5.69
1960 2044 7.667219 CCCATATATTGAGCACCTAATTGACTT 59.333 37.037 0.00 0.00 0.00 3.01
2006 2090 8.866970 TTTAGGACCAAGGTTATTTCGTAATT 57.133 30.769 0.00 0.00 0.00 1.40
2093 2177 1.731709 TGAATCGTGTTTCTCGGCATG 59.268 47.619 0.00 0.00 0.00 4.06
2156 2240 6.668541 AATCAGATCAATACGTGAAACAGG 57.331 37.500 0.00 0.00 40.50 4.00
2394 2478 3.146066 CGAGAATCTGTTTTGGGGTTCA 58.854 45.455 0.00 0.00 0.00 3.18
2422 2506 7.687757 CCGTAATTACAAAATACGTAGCGTTTT 59.312 33.333 15.67 0.39 41.54 2.43
2427 2511 6.408898 GCAACCGTAATTACAAAATACGTAGC 59.591 38.462 15.67 2.81 32.90 3.58
2438 2522 1.746220 GCCCATGCAACCGTAATTACA 59.254 47.619 15.67 0.00 37.47 2.41
2441 2525 1.555967 AAGCCCATGCAACCGTAATT 58.444 45.000 0.00 0.00 41.13 1.40
2475 2559 9.188588 CCACTGCAATTGCTTCTAAAATATATG 57.811 33.333 29.37 8.50 42.66 1.78
2476 2560 7.869429 GCCACTGCAATTGCTTCTAAAATATAT 59.131 33.333 29.37 0.00 42.66 0.86
2482 2566 2.892852 AGCCACTGCAATTGCTTCTAAA 59.107 40.909 29.37 8.76 42.66 1.85
2491 2576 6.588719 TTATTTACTTCAGCCACTGCAATT 57.411 33.333 0.00 0.00 41.13 2.32
2496 2581 5.801947 GCACATTTATTTACTTCAGCCACTG 59.198 40.000 0.00 0.00 0.00 3.66
2525 2610 9.319143 AGCACAGATTTTCATACTACACTATTC 57.681 33.333 0.00 0.00 0.00 1.75
2563 2648 4.697352 TGGATTTTCTGCTCTAAACTCTGC 59.303 41.667 0.00 0.00 0.00 4.26
2564 2649 5.936956 AGTGGATTTTCTGCTCTAAACTCTG 59.063 40.000 0.00 0.00 0.00 3.35
2733 2818 7.839680 ATCCATTACCTCAAGTTTTTCAAGT 57.160 32.000 0.00 0.00 0.00 3.16
2802 2887 6.100279 AGGATGAACTGATGTATTCCTTAGCA 59.900 38.462 0.00 0.00 29.94 3.49
2803 2888 6.529220 AGGATGAACTGATGTATTCCTTAGC 58.471 40.000 0.00 0.00 29.94 3.09
2805 2890 7.921041 AGAGGATGAACTGATGTATTCCTTA 57.079 36.000 0.00 0.00 32.56 2.69
2808 2893 8.133024 AGATAGAGGATGAACTGATGTATTCC 57.867 38.462 0.00 0.00 0.00 3.01
2832 2917 6.871492 ACCACAAAGAAAAGTGTTAACCAAAG 59.129 34.615 2.48 0.00 33.99 2.77
2833 2918 6.760291 ACCACAAAGAAAAGTGTTAACCAAA 58.240 32.000 2.48 0.00 33.99 3.28
2838 2923 5.712917 ACAGGACCACAAAGAAAAGTGTTAA 59.287 36.000 0.00 0.00 33.99 2.01
2912 2997 7.852971 TGAGATTTTGTTATAACTAACCCCG 57.147 36.000 16.33 0.00 37.09 5.73
2950 3035 9.264782 CACAAAAACAGTGCAAAATAGAAAAAG 57.735 29.630 0.00 0.00 0.00 2.27
2964 3049 5.978919 ACTGATACAATGCACAAAAACAGTG 59.021 36.000 12.30 0.00 37.84 3.66
2982 3067 8.408043 AAATGGAGAAAACAATGTCACTGATA 57.592 30.769 0.00 0.00 0.00 2.15
2987 3072 4.382754 GCGAAATGGAGAAAACAATGTCAC 59.617 41.667 0.00 0.00 0.00 3.67
2991 3076 4.797471 TCAGCGAAATGGAGAAAACAATG 58.203 39.130 0.00 0.00 0.00 2.82
3037 3122 0.533755 CCCAAATCGCCTAGCCTCAG 60.534 60.000 0.00 0.00 0.00 3.35
3066 3151 5.140747 TGTTTGGTGTTTGCTTGTTTACT 57.859 34.783 0.00 0.00 0.00 2.24
3081 3166 0.681175 GCCAGATTTGCCTGTTTGGT 59.319 50.000 0.00 0.00 38.35 3.67
3090 3175 2.677559 GCGAAGATAGCCAGATTTGC 57.322 50.000 0.00 0.00 0.00 3.68
3123 3208 6.915544 TGAGCAGCAAATAAGATAAGACAG 57.084 37.500 0.00 0.00 0.00 3.51
3130 3215 6.978659 CACATCAAATGAGCAGCAAATAAGAT 59.021 34.615 0.00 0.00 0.00 2.40
3236 3321 6.919775 AAACTGTCCTAGACAAGTATCAGT 57.080 37.500 0.00 0.00 42.26 3.41
3360 3445 4.160626 CGTTGGGGGAAATTTAAAGCCATA 59.839 41.667 0.00 0.00 0.00 2.74
3375 3460 2.097036 GGGATCTTTTAACGTTGGGGG 58.903 52.381 11.99 0.00 0.00 5.40
3448 3543 7.573968 AGATTGAAGAGTTTATGGGTAATGC 57.426 36.000 0.00 0.00 0.00 3.56
3461 3556 6.426646 AGTAACAGACCAAGATTGAAGAGT 57.573 37.500 0.00 0.00 0.00 3.24
3484 3579 5.015178 ACCCCTTTCAGATAGGAATCAACAA 59.985 40.000 8.45 0.00 34.56 2.83
3494 3589 7.782897 TGATATAGACACCCCTTTCAGATAG 57.217 40.000 0.00 0.00 0.00 2.08
3714 3809 6.487689 AAAAGATGTCATCTCGTTTCCTTC 57.512 37.500 15.75 0.00 39.08 3.46
3718 3813 9.907576 CATACTAAAAAGATGTCATCTCGTTTC 57.092 33.333 15.75 0.00 39.08 2.78
3802 3897 6.053005 CGACTTATTAGGCAACCCATTAGAA 58.947 40.000 0.00 0.00 37.17 2.10
3909 4004 8.017373 CACAATTTCTGGACAACACACTTATAG 58.983 37.037 0.00 0.00 0.00 1.31
3916 4011 3.761218 ACACACAATTTCTGGACAACACA 59.239 39.130 0.00 0.00 0.00 3.72
3927 4022 8.647226 GCTATTGAAATACCAACACACAATTTC 58.353 33.333 0.00 0.00 37.17 2.17
3966 4061 7.873505 CCCTTCCTACTGAAACATAATACTAGC 59.126 40.741 0.00 0.00 31.06 3.42
4082 4180 4.052159 AGAGTCGCATAGGATGTTTGAG 57.948 45.455 0.00 0.00 0.00 3.02
4417 4515 3.807538 CGTCGACGTGGATCGGGT 61.808 66.667 29.08 0.00 44.69 5.28
4440 4538 1.834263 CTCCTTGATCCTCCTCCGTTT 59.166 52.381 0.00 0.00 0.00 3.60
4450 4548 1.144936 CCGGCTGTCTCCTTGATCC 59.855 63.158 0.00 0.00 0.00 3.36
4451 4549 1.522580 GCCGGCTGTCTCCTTGATC 60.523 63.158 22.15 0.00 0.00 2.92
4453 4551 3.706373 GGCCGGCTGTCTCCTTGA 61.706 66.667 28.56 0.00 0.00 3.02
4467 4565 4.376176 TTGCATTGCAAGCCGGCC 62.376 61.111 26.15 8.84 43.99 6.13
4497 4595 6.183360 ACCATTCTCCTCTCATTCTCATTCTC 60.183 42.308 0.00 0.00 0.00 2.87
4498 4596 5.666718 ACCATTCTCCTCTCATTCTCATTCT 59.333 40.000 0.00 0.00 0.00 2.40
4499 4597 5.759273 CACCATTCTCCTCTCATTCTCATTC 59.241 44.000 0.00 0.00 0.00 2.67
4500 4598 5.397672 CCACCATTCTCCTCTCATTCTCATT 60.398 44.000 0.00 0.00 0.00 2.57
4501 4599 4.102838 CCACCATTCTCCTCTCATTCTCAT 59.897 45.833 0.00 0.00 0.00 2.90
4502 4600 3.453717 CCACCATTCTCCTCTCATTCTCA 59.546 47.826 0.00 0.00 0.00 3.27
4582 4680 1.836802 AGGCTGCTTCCTTCCTAGAAG 59.163 52.381 0.00 0.00 42.99 2.85
4587 4685 1.271127 GGAGAGGCTGCTTCCTTCCT 61.271 60.000 8.26 0.00 36.38 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.