Multiple sequence alignment - TraesCS3B01G351100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G351100 chr3B 100.000 6711 0 0 1 6711 561103564 561096854 0.000000e+00 12393
1 TraesCS3B01G351100 chr3B 91.262 103 9 0 4491 4593 354923093 354923195 2.520000e-29 141
2 TraesCS3B01G351100 chr3A 94.368 2024 81 18 4705 6708 556665724 556667734 0.000000e+00 3075
3 TraesCS3B01G351100 chr3A 93.812 1616 78 12 274 1877 556661453 556663058 0.000000e+00 2410
4 TraesCS3B01G351100 chr3A 92.380 1601 63 20 2921 4499 556663831 556665394 0.000000e+00 2226
5 TraesCS3B01G351100 chr3A 95.167 600 27 2 1995 2592 556663057 556663656 0.000000e+00 946
6 TraesCS3B01G351100 chr3A 88.649 185 8 2 2710 2894 556663663 556663834 5.270000e-51 213
7 TraesCS3B01G351100 chr3A 96.364 110 4 0 2604 2713 90877949 90878058 1.490000e-41 182
8 TraesCS3B01G351100 chr3A 94.737 114 4 2 2600 2712 614759294 614759406 6.920000e-40 176
9 TraesCS3B01G351100 chr3A 92.035 113 9 0 4592 4704 556665392 556665504 6.970000e-35 159
10 TraesCS3B01G351100 chr3D 94.392 1801 75 14 2710 4499 429102472 429100687 0.000000e+00 2743
11 TraesCS3B01G351100 chr3D 94.613 1615 69 8 153 1763 429104838 429103238 0.000000e+00 2484
12 TraesCS3B01G351100 chr3D 95.560 1419 53 7 4592 6006 429100689 429099277 0.000000e+00 2263
13 TraesCS3B01G351100 chr3D 96.887 771 21 2 1838 2605 429103241 429102471 0.000000e+00 1288
14 TraesCS3B01G351100 chr3D 89.805 667 37 9 6058 6711 429099185 429098537 0.000000e+00 826
15 TraesCS3B01G351100 chr6B 98.148 108 2 0 2604 2711 460906301 460906194 8.880000e-44 189
16 TraesCS3B01G351100 chr7B 90.845 142 9 3 2369 2509 571571793 571571655 3.200000e-43 187
17 TraesCS3B01G351100 chr7B 87.234 141 13 5 2369 2509 146359266 146359131 9.010000e-34 156
18 TraesCS3B01G351100 chr7A 93.548 124 6 1 2588 2711 10278378 10278499 4.130000e-42 183
19 TraesCS3B01G351100 chr7A 91.346 104 9 0 4491 4594 238526319 238526216 7.020000e-30 143
20 TraesCS3B01G351100 chr6A 97.222 108 3 0 2604 2711 596198643 596198536 4.130000e-42 183
21 TraesCS3B01G351100 chr6A 94.690 113 6 0 2604 2716 116959605 116959493 6.920000e-40 176
22 TraesCS3B01G351100 chr4B 97.222 108 3 0 2604 2711 621917 621810 4.130000e-42 183
23 TraesCS3B01G351100 chr4B 91.509 106 9 0 4491 4596 186741773 186741668 5.420000e-31 147
24 TraesCS3B01G351100 chr2B 97.222 108 3 0 2604 2711 464021308 464021415 4.130000e-42 183
25 TraesCS3B01G351100 chr2B 93.069 101 6 1 4493 4593 584118587 584118686 5.420000e-31 147
26 TraesCS3B01G351100 chr5D 96.296 108 4 0 2604 2711 450216751 450216644 1.920000e-40 178
27 TraesCS3B01G351100 chr5D 92.784 97 7 0 4497 4593 521371677 521371581 2.520000e-29 141
28 TraesCS3B01G351100 chr7D 91.667 108 9 0 4488 4595 545397529 545397636 4.190000e-32 150
29 TraesCS3B01G351100 chr1B 90.991 111 8 2 4487 4596 259511831 259511940 1.510000e-31 148
30 TraesCS3B01G351100 chr2D 92.079 101 7 1 4492 4592 466205551 466205452 2.520000e-29 141
31 TraesCS3B01G351100 chr1A 92.000 100 8 0 4494 4593 516778099 516778198 2.520000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G351100 chr3B 561096854 561103564 6710 True 12393.000000 12393 100.000000 1 6711 1 chr3B.!!$R1 6710
1 TraesCS3B01G351100 chr3A 556661453 556667734 6281 False 1504.833333 3075 92.735167 274 6708 6 chr3A.!!$F3 6434
2 TraesCS3B01G351100 chr3D 429098537 429104838 6301 True 1920.800000 2743 94.251400 153 6711 5 chr3D.!!$R1 6558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 780 0.179020 CCAAGACAGAACTGCACCCA 60.179 55.000 1.46 0.0 0.00 4.51 F
1113 1123 1.003580 CACATACCCAGCTGTCCAGTT 59.996 52.381 13.81 0.0 0.00 3.16 F
1645 1656 1.590147 CGTCGCTACAGTTCCCCTT 59.410 57.895 0.00 0.0 0.00 3.95 F
2665 2686 0.609957 ACAGCATGCAAAGCAGCCTA 60.610 50.000 21.98 0.0 43.65 3.93 F
2666 2687 0.744874 CAGCATGCAAAGCAGCCTAT 59.255 50.000 21.98 0.0 43.65 2.57 F
4095 4125 0.320073 TAAACGAGGCCACTTGTCGG 60.320 55.000 14.92 0.0 40.52 4.79 F
5494 5754 1.450312 GGAGGATGACGGCAAGGTG 60.450 63.158 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2646 2667 0.609957 TAGGCTGCTTTGCATGCTGT 60.610 50.000 20.33 4.95 38.13 4.40 R
2647 2668 0.744874 ATAGGCTGCTTTGCATGCTG 59.255 50.000 20.33 10.18 38.13 4.41 R
3230 3255 1.289276 CGCAAAAAGCAGCCAAAAGT 58.711 45.000 0.00 0.00 46.13 2.66 R
3938 3968 0.106419 ACCGAAAAAGGGGAGCACAA 60.106 50.000 0.00 0.00 35.02 3.33 R
4578 4619 1.020437 CGTAGTACTCCTTCCGTCCC 58.980 60.000 0.00 0.00 0.00 4.46 R
5566 5826 0.548926 TTGCCATACCAGGGGAGTCA 60.549 55.000 0.00 0.00 0.00 3.41 R
6396 6737 2.232941 CAGAGCTGGGCAATGACAAAAT 59.767 45.455 0.00 0.00 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.881775 ATAACCAGTGTTTCTTGTTTCTTCT 57.118 32.000 0.00 0.00 34.54 2.85
27 28 8.974060 ATAACCAGTGTTTCTTGTTTCTTCTA 57.026 30.769 0.00 0.00 34.54 2.10
28 29 7.881775 AACCAGTGTTTCTTGTTTCTTCTAT 57.118 32.000 0.00 0.00 29.38 1.98
29 30 7.497925 ACCAGTGTTTCTTGTTTCTTCTATC 57.502 36.000 0.00 0.00 0.00 2.08
30 31 6.486993 ACCAGTGTTTCTTGTTTCTTCTATCC 59.513 38.462 0.00 0.00 0.00 2.59
31 32 6.486657 CCAGTGTTTCTTGTTTCTTCTATCCA 59.513 38.462 0.00 0.00 0.00 3.41
32 33 7.355778 CAGTGTTTCTTGTTTCTTCTATCCAC 58.644 38.462 0.00 0.00 0.00 4.02
33 34 6.202954 AGTGTTTCTTGTTTCTTCTATCCACG 59.797 38.462 0.00 0.00 0.00 4.94
34 35 6.202188 GTGTTTCTTGTTTCTTCTATCCACGA 59.798 38.462 0.00 0.00 0.00 4.35
35 36 6.934645 TGTTTCTTGTTTCTTCTATCCACGAT 59.065 34.615 0.00 0.00 0.00 3.73
36 37 8.092068 TGTTTCTTGTTTCTTCTATCCACGATA 58.908 33.333 0.00 0.00 0.00 2.92
37 38 8.381387 GTTTCTTGTTTCTTCTATCCACGATAC 58.619 37.037 0.00 0.00 0.00 2.24
38 39 6.263344 TCTTGTTTCTTCTATCCACGATACG 58.737 40.000 0.00 0.00 0.00 3.06
39 40 5.571784 TGTTTCTTCTATCCACGATACGT 57.428 39.130 0.00 0.00 42.36 3.57
40 41 5.575957 TGTTTCTTCTATCCACGATACGTC 58.424 41.667 0.00 0.00 38.32 4.34
41 42 5.124297 TGTTTCTTCTATCCACGATACGTCA 59.876 40.000 0.00 0.00 38.32 4.35
42 43 5.419760 TTCTTCTATCCACGATACGTCAG 57.580 43.478 0.00 0.00 38.32 3.51
43 44 4.449131 TCTTCTATCCACGATACGTCAGT 58.551 43.478 0.00 0.00 38.32 3.41
44 45 4.272748 TCTTCTATCCACGATACGTCAGTG 59.727 45.833 0.00 0.47 38.32 3.66
45 46 3.800531 TCTATCCACGATACGTCAGTGA 58.199 45.455 16.32 0.00 38.32 3.41
46 47 4.193865 TCTATCCACGATACGTCAGTGAA 58.806 43.478 16.32 0.23 38.32 3.18
47 48 4.820173 TCTATCCACGATACGTCAGTGAAT 59.180 41.667 16.32 7.11 38.32 2.57
48 49 3.861276 TCCACGATACGTCAGTGAATT 57.139 42.857 16.32 0.00 38.32 2.17
49 50 4.182693 TCCACGATACGTCAGTGAATTT 57.817 40.909 16.32 0.00 38.32 1.82
50 51 3.924073 TCCACGATACGTCAGTGAATTTG 59.076 43.478 16.32 3.35 38.32 2.32
51 52 3.924073 CCACGATACGTCAGTGAATTTGA 59.076 43.478 16.32 0.00 38.32 2.69
52 53 4.566759 CCACGATACGTCAGTGAATTTGAT 59.433 41.667 16.32 0.00 38.32 2.57
53 54 5.063438 CCACGATACGTCAGTGAATTTGATT 59.937 40.000 16.32 0.00 38.32 2.57
54 55 6.402118 CCACGATACGTCAGTGAATTTGATTT 60.402 38.462 16.32 0.00 38.32 2.17
55 56 6.462636 CACGATACGTCAGTGAATTTGATTTG 59.537 38.462 11.11 0.00 38.32 2.32
56 57 5.449113 CGATACGTCAGTGAATTTGATTTGC 59.551 40.000 0.00 0.00 0.00 3.68
57 58 4.566545 ACGTCAGTGAATTTGATTTGCA 57.433 36.364 0.00 0.00 0.00 4.08
58 59 4.539870 ACGTCAGTGAATTTGATTTGCAG 58.460 39.130 0.00 0.00 0.00 4.41
59 60 3.362831 CGTCAGTGAATTTGATTTGCAGC 59.637 43.478 0.00 0.00 0.00 5.25
60 61 4.553323 GTCAGTGAATTTGATTTGCAGCT 58.447 39.130 0.00 0.00 0.00 4.24
61 62 4.620184 GTCAGTGAATTTGATTTGCAGCTC 59.380 41.667 0.00 0.00 0.00 4.09
62 63 3.606777 CAGTGAATTTGATTTGCAGCTCG 59.393 43.478 0.00 0.00 0.00 5.03
63 64 3.503363 AGTGAATTTGATTTGCAGCTCGA 59.497 39.130 0.00 0.00 0.00 4.04
64 65 4.022935 AGTGAATTTGATTTGCAGCTCGAA 60.023 37.500 0.00 3.52 0.00 3.71
65 66 4.089065 GTGAATTTGATTTGCAGCTCGAAC 59.911 41.667 0.00 0.00 0.00 3.95
66 67 2.314561 TTTGATTTGCAGCTCGAACG 57.685 45.000 0.00 0.00 0.00 3.95
67 68 1.225855 TTGATTTGCAGCTCGAACGT 58.774 45.000 0.00 0.00 0.00 3.99
68 69 0.512518 TGATTTGCAGCTCGAACGTG 59.487 50.000 0.00 0.00 0.00 4.49
69 70 0.512952 GATTTGCAGCTCGAACGTGT 59.487 50.000 0.00 0.00 0.00 4.49
70 71 0.512952 ATTTGCAGCTCGAACGTGTC 59.487 50.000 0.00 0.00 0.00 3.67
71 72 0.808060 TTTGCAGCTCGAACGTGTCA 60.808 50.000 0.00 0.00 0.00 3.58
72 73 0.599991 TTGCAGCTCGAACGTGTCAT 60.600 50.000 0.00 0.00 0.00 3.06
73 74 1.008875 TGCAGCTCGAACGTGTCATC 61.009 55.000 0.00 0.00 0.00 2.92
74 75 1.687494 GCAGCTCGAACGTGTCATCC 61.687 60.000 0.00 0.00 0.00 3.51
75 76 1.154016 AGCTCGAACGTGTCATCCG 60.154 57.895 0.00 0.00 0.00 4.18
76 77 1.443872 GCTCGAACGTGTCATCCGT 60.444 57.895 0.00 0.00 40.92 4.69
77 78 1.674611 GCTCGAACGTGTCATCCGTG 61.675 60.000 0.00 0.00 38.77 4.94
78 79 1.674611 CTCGAACGTGTCATCCGTGC 61.675 60.000 0.00 0.00 38.77 5.34
79 80 1.733041 CGAACGTGTCATCCGTGCT 60.733 57.895 0.00 0.00 38.77 4.40
80 81 1.282248 CGAACGTGTCATCCGTGCTT 61.282 55.000 0.00 0.00 38.77 3.91
81 82 0.438830 GAACGTGTCATCCGTGCTTC 59.561 55.000 0.00 0.00 38.77 3.86
82 83 0.949105 AACGTGTCATCCGTGCTTCC 60.949 55.000 0.00 0.00 38.77 3.46
83 84 1.374125 CGTGTCATCCGTGCTTCCA 60.374 57.895 0.00 0.00 0.00 3.53
84 85 1.354337 CGTGTCATCCGTGCTTCCAG 61.354 60.000 0.00 0.00 0.00 3.86
85 86 0.320771 GTGTCATCCGTGCTTCCAGT 60.321 55.000 0.00 0.00 0.00 4.00
86 87 0.396435 TGTCATCCGTGCTTCCAGTT 59.604 50.000 0.00 0.00 0.00 3.16
87 88 1.202758 TGTCATCCGTGCTTCCAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
88 89 1.880027 GTCATCCGTGCTTCCAGTTTT 59.120 47.619 0.00 0.00 0.00 2.43
89 90 1.879380 TCATCCGTGCTTCCAGTTTTG 59.121 47.619 0.00 0.00 0.00 2.44
90 91 1.608590 CATCCGTGCTTCCAGTTTTGT 59.391 47.619 0.00 0.00 0.00 2.83
91 92 1.757682 TCCGTGCTTCCAGTTTTGTT 58.242 45.000 0.00 0.00 0.00 2.83
92 93 1.673920 TCCGTGCTTCCAGTTTTGTTC 59.326 47.619 0.00 0.00 0.00 3.18
93 94 1.269051 CCGTGCTTCCAGTTTTGTTCC 60.269 52.381 0.00 0.00 0.00 3.62
94 95 1.676006 CGTGCTTCCAGTTTTGTTCCT 59.324 47.619 0.00 0.00 0.00 3.36
95 96 2.099098 CGTGCTTCCAGTTTTGTTCCTT 59.901 45.455 0.00 0.00 0.00 3.36
96 97 3.428862 CGTGCTTCCAGTTTTGTTCCTTT 60.429 43.478 0.00 0.00 0.00 3.11
97 98 4.503910 GTGCTTCCAGTTTTGTTCCTTTT 58.496 39.130 0.00 0.00 0.00 2.27
98 99 4.566759 GTGCTTCCAGTTTTGTTCCTTTTC 59.433 41.667 0.00 0.00 0.00 2.29
99 100 4.119862 GCTTCCAGTTTTGTTCCTTTTCC 58.880 43.478 0.00 0.00 0.00 3.13
100 101 4.693283 CTTCCAGTTTTGTTCCTTTTCCC 58.307 43.478 0.00 0.00 0.00 3.97
101 102 3.035363 TCCAGTTTTGTTCCTTTTCCCC 58.965 45.455 0.00 0.00 0.00 4.81
102 103 3.038280 CCAGTTTTGTTCCTTTTCCCCT 58.962 45.455 0.00 0.00 0.00 4.79
103 104 3.454447 CCAGTTTTGTTCCTTTTCCCCTT 59.546 43.478 0.00 0.00 0.00 3.95
104 105 4.080582 CCAGTTTTGTTCCTTTTCCCCTTT 60.081 41.667 0.00 0.00 0.00 3.11
105 106 5.116180 CAGTTTTGTTCCTTTTCCCCTTTC 58.884 41.667 0.00 0.00 0.00 2.62
106 107 4.116961 GTTTTGTTCCTTTTCCCCTTTCG 58.883 43.478 0.00 0.00 0.00 3.46
107 108 3.300239 TTGTTCCTTTTCCCCTTTCGA 57.700 42.857 0.00 0.00 0.00 3.71
108 109 3.300239 TGTTCCTTTTCCCCTTTCGAA 57.700 42.857 0.00 0.00 0.00 3.71
109 110 3.839778 TGTTCCTTTTCCCCTTTCGAAT 58.160 40.909 0.00 0.00 0.00 3.34
110 111 4.219919 TGTTCCTTTTCCCCTTTCGAATT 58.780 39.130 0.00 0.00 0.00 2.17
111 112 5.386924 TGTTCCTTTTCCCCTTTCGAATTA 58.613 37.500 0.00 0.00 0.00 1.40
112 113 6.014012 TGTTCCTTTTCCCCTTTCGAATTAT 58.986 36.000 0.00 0.00 0.00 1.28
113 114 6.071616 TGTTCCTTTTCCCCTTTCGAATTATG 60.072 38.462 0.00 0.00 0.00 1.90
114 115 5.822204 TCCTTTTCCCCTTTCGAATTATGA 58.178 37.500 0.00 0.00 0.00 2.15
115 116 5.885912 TCCTTTTCCCCTTTCGAATTATGAG 59.114 40.000 0.00 0.00 0.00 2.90
116 117 5.067805 CCTTTTCCCCTTTCGAATTATGAGG 59.932 44.000 0.00 1.80 0.00 3.86
117 118 3.208747 TCCCCTTTCGAATTATGAGGC 57.791 47.619 7.23 0.00 0.00 4.70
118 119 2.777692 TCCCCTTTCGAATTATGAGGCT 59.222 45.455 7.23 0.00 0.00 4.58
119 120 3.142174 CCCCTTTCGAATTATGAGGCTC 58.858 50.000 7.79 7.79 0.00 4.70
120 121 3.433598 CCCCTTTCGAATTATGAGGCTCA 60.434 47.826 21.19 21.19 0.00 4.26
121 122 3.561725 CCCTTTCGAATTATGAGGCTCAC 59.438 47.826 21.37 5.61 0.00 3.51
122 123 3.561725 CCTTTCGAATTATGAGGCTCACC 59.438 47.826 21.37 6.03 0.00 4.02
123 124 2.509052 TCGAATTATGAGGCTCACCG 57.491 50.000 21.37 17.02 42.76 4.94
124 125 1.754803 TCGAATTATGAGGCTCACCGT 59.245 47.619 21.37 6.86 42.76 4.83
125 126 2.128035 CGAATTATGAGGCTCACCGTC 58.872 52.381 21.37 13.42 42.76 4.79
126 127 2.484889 GAATTATGAGGCTCACCGTCC 58.515 52.381 21.37 5.83 42.76 4.79
127 128 0.759346 ATTATGAGGCTCACCGTCCC 59.241 55.000 21.37 0.00 42.76 4.46
128 129 1.335132 TTATGAGGCTCACCGTCCCC 61.335 60.000 21.37 0.00 42.76 4.81
147 148 3.795877 CCCCCAATTACATTTGCATGAC 58.204 45.455 0.00 0.00 34.11 3.06
148 149 3.197333 CCCCCAATTACATTTGCATGACA 59.803 43.478 0.00 0.00 34.11 3.58
149 150 4.183101 CCCCAATTACATTTGCATGACAC 58.817 43.478 0.00 0.00 34.11 3.67
150 151 3.858812 CCCAATTACATTTGCATGACACG 59.141 43.478 0.00 0.00 34.11 4.49
151 152 3.858812 CCAATTACATTTGCATGACACGG 59.141 43.478 0.00 0.00 34.11 4.94
181 182 4.097741 CACACAAATCCCAGTTTTGAGACA 59.902 41.667 3.39 0.00 37.48 3.41
197 198 5.885230 TGAGACAGTTCAGGCAAATTATG 57.115 39.130 0.00 0.00 0.00 1.90
233 234 7.389053 AGTCTATAGGTTTCTTTGTTTGCTGAG 59.611 37.037 0.00 0.00 0.00 3.35
260 261 6.317140 CGATAGGGATTGAATCATGGGTTATG 59.683 42.308 7.56 0.00 38.17 1.90
262 263 4.140853 AGGGATTGAATCATGGGTTATGCT 60.141 41.667 7.56 0.00 36.70 3.79
263 264 4.590222 GGGATTGAATCATGGGTTATGCTT 59.410 41.667 7.56 0.00 36.70 3.91
264 265 5.510179 GGGATTGAATCATGGGTTATGCTTG 60.510 44.000 7.56 0.00 36.70 4.01
269 270 3.643199 TCATGGGTTATGCTTGTGCTA 57.357 42.857 0.00 0.00 40.48 3.49
275 276 5.123227 TGGGTTATGCTTGTGCTATAACTC 58.877 41.667 15.48 13.84 40.23 3.01
288 289 6.098838 TGTGCTATAACTCTGGATCTTCACAT 59.901 38.462 0.00 0.00 0.00 3.21
339 340 9.892130 ATTTGTTTTTACTGTCCAAATTTACCA 57.108 25.926 0.00 0.00 33.25 3.25
340 341 8.705048 TTGTTTTTACTGTCCAAATTTACCAC 57.295 30.769 0.00 0.00 0.00 4.16
349 350 9.886132 ACTGTCCAAATTTACCACTACTAATAG 57.114 33.333 0.00 0.00 34.25 1.73
378 382 6.258160 CACCACTCTGTTTTGTAACTTCAAG 58.742 40.000 0.00 0.00 35.24 3.02
419 423 5.147162 CGTCAGCTTTACAGTTTTCCATTC 58.853 41.667 0.00 0.00 0.00 2.67
420 424 5.147162 GTCAGCTTTACAGTTTTCCATTCG 58.853 41.667 0.00 0.00 0.00 3.34
453 457 4.500205 CGAATGATGATTTGGGACCATTGG 60.500 45.833 0.00 0.00 0.00 3.16
550 554 2.472695 TTCGTTCCAAGGATGACAGG 57.527 50.000 0.00 0.00 0.00 4.00
689 693 9.672086 GAATCTCAGTCATCATACAGTAGTTAC 57.328 37.037 0.00 0.00 0.00 2.50
744 753 1.268352 GAATACAAAGGGTGCGTGCAA 59.732 47.619 0.00 0.00 0.00 4.08
771 780 0.179020 CCAAGACAGAACTGCACCCA 60.179 55.000 1.46 0.00 0.00 4.51
843 852 4.556135 CAGCGTCTGTTTCAGCAAAATATG 59.444 41.667 0.00 0.00 0.00 1.78
924 933 5.457052 GGGCAAGGGGCTAGTTATTACATTA 60.457 44.000 0.00 0.00 44.01 1.90
925 934 6.066032 GGCAAGGGGCTAGTTATTACATTAA 58.934 40.000 0.00 0.00 44.01 1.40
926 935 6.719829 GGCAAGGGGCTAGTTATTACATTAAT 59.280 38.462 0.00 0.00 44.01 1.40
927 936 7.232737 GGCAAGGGGCTAGTTATTACATTAATT 59.767 37.037 0.00 0.00 44.01 1.40
1059 1069 9.930693 AAAGAATTCTACATTCCGACCTATATC 57.069 33.333 8.75 0.00 0.00 1.63
1113 1123 1.003580 CACATACCCAGCTGTCCAGTT 59.996 52.381 13.81 0.00 0.00 3.16
1284 1294 8.950210 ACCGCCAGAGATAAATATATTGATTTG 58.050 33.333 0.00 0.00 31.51 2.32
1360 1370 6.880484 TCCAGACAAAGTCTTACACAAACTA 58.120 36.000 0.00 0.00 41.37 2.24
1416 1426 5.397334 GGGATACTCTTGCTTCTGAAATCCT 60.397 44.000 11.28 0.00 32.68 3.24
1645 1656 1.590147 CGTCGCTACAGTTCCCCTT 59.410 57.895 0.00 0.00 0.00 3.95
1772 1788 4.808895 CGTGTTATACTTGCATGAGCCTTA 59.191 41.667 6.60 0.00 41.13 2.69
1785 1801 5.295950 CATGAGCCTTATCTGTTAGACCTG 58.704 45.833 0.00 0.00 0.00 4.00
1820 1836 7.359765 CGACAGTATGACCTAAAACGTTTGATT 60.360 37.037 15.46 1.16 39.69 2.57
1821 1837 8.161699 ACAGTATGACCTAAAACGTTTGATTT 57.838 30.769 15.46 0.76 39.69 2.17
1943 1962 3.037431 TCCGTGGCATTTTCCATTTTG 57.963 42.857 0.00 0.00 38.57 2.44
1954 1973 9.305925 GGCATTTTCCATTTTGAACTTAGATAG 57.694 33.333 0.00 0.00 0.00 2.08
2089 2109 3.555956 ACTCAATAGTAGCGCGAAATTGG 59.444 43.478 12.10 14.77 32.84 3.16
2285 2305 2.816087 CTGTTTCAGCTGGCATACTGTT 59.184 45.455 15.13 0.00 35.37 3.16
2407 2427 8.228206 AGATCCAGAAGATATGGTAACTACTGA 58.772 37.037 0.00 0.00 39.01 3.41
2408 2428 8.783660 ATCCAGAAGATATGGTAACTACTGAA 57.216 34.615 0.00 0.00 39.01 3.02
2514 2534 5.235850 TGTTTTCTGGTAGGCTGTTATGA 57.764 39.130 0.00 0.00 0.00 2.15
2521 2541 6.480763 TCTGGTAGGCTGTTATGAATTTTCA 58.519 36.000 0.00 0.00 42.14 2.69
2527 2547 9.346725 GTAGGCTGTTATGAATTTTCAGAAAAG 57.653 33.333 13.71 11.71 43.32 2.27
2612 2633 7.741554 ATCTGAAATAGTTGTTACTCCCTCT 57.258 36.000 0.00 0.00 35.78 3.69
2613 2634 6.936279 TCTGAAATAGTTGTTACTCCCTCTG 58.064 40.000 0.00 0.00 35.78 3.35
2614 2635 6.497259 TCTGAAATAGTTGTTACTCCCTCTGT 59.503 38.462 0.00 0.00 35.78 3.41
2615 2636 7.016268 TCTGAAATAGTTGTTACTCCCTCTGTT 59.984 37.037 0.00 0.00 35.78 3.16
2616 2637 7.159372 TGAAATAGTTGTTACTCCCTCTGTTC 58.841 38.462 0.00 0.00 35.78 3.18
2617 2638 6.681729 AATAGTTGTTACTCCCTCTGTTCA 57.318 37.500 0.00 0.00 35.78 3.18
2618 2639 4.338379 AGTTGTTACTCCCTCTGTTCAC 57.662 45.455 0.00 0.00 0.00 3.18
2619 2640 3.967987 AGTTGTTACTCCCTCTGTTCACT 59.032 43.478 0.00 0.00 0.00 3.41
2620 2641 4.409247 AGTTGTTACTCCCTCTGTTCACTT 59.591 41.667 0.00 0.00 0.00 3.16
2621 2642 5.104485 AGTTGTTACTCCCTCTGTTCACTTT 60.104 40.000 0.00 0.00 0.00 2.66
2622 2643 5.367945 TGTTACTCCCTCTGTTCACTTTT 57.632 39.130 0.00 0.00 0.00 2.27
2623 2644 6.488769 TGTTACTCCCTCTGTTCACTTTTA 57.511 37.500 0.00 0.00 0.00 1.52
2624 2645 7.074653 TGTTACTCCCTCTGTTCACTTTTAT 57.925 36.000 0.00 0.00 0.00 1.40
2625 2646 8.197592 TGTTACTCCCTCTGTTCACTTTTATA 57.802 34.615 0.00 0.00 0.00 0.98
2626 2647 8.653191 TGTTACTCCCTCTGTTCACTTTTATAA 58.347 33.333 0.00 0.00 0.00 0.98
2627 2648 9.152595 GTTACTCCCTCTGTTCACTTTTATAAG 57.847 37.037 0.00 0.00 37.40 1.73
2628 2649 7.317722 ACTCCCTCTGTTCACTTTTATAAGT 57.682 36.000 0.00 0.00 45.40 2.24
2629 2650 7.387643 ACTCCCTCTGTTCACTTTTATAAGTC 58.612 38.462 0.00 0.00 42.67 3.01
2630 2651 6.708285 TCCCTCTGTTCACTTTTATAAGTCC 58.292 40.000 0.00 0.00 42.67 3.85
2631 2652 6.500751 TCCCTCTGTTCACTTTTATAAGTCCT 59.499 38.462 0.00 0.00 42.67 3.85
2632 2653 7.017254 TCCCTCTGTTCACTTTTATAAGTCCTT 59.983 37.037 0.00 0.00 42.67 3.36
2633 2654 7.119846 CCCTCTGTTCACTTTTATAAGTCCTTG 59.880 40.741 0.00 0.00 42.67 3.61
2634 2655 7.878127 CCTCTGTTCACTTTTATAAGTCCTTGA 59.122 37.037 0.00 0.00 42.67 3.02
2635 2656 9.273016 CTCTGTTCACTTTTATAAGTCCTTGAA 57.727 33.333 0.00 0.00 42.67 2.69
2636 2657 9.273016 TCTGTTCACTTTTATAAGTCCTTGAAG 57.727 33.333 0.00 0.00 42.67 3.02
2637 2658 9.273016 CTGTTCACTTTTATAAGTCCTTGAAGA 57.727 33.333 0.00 0.00 42.67 2.87
2638 2659 9.052759 TGTTCACTTTTATAAGTCCTTGAAGAC 57.947 33.333 0.00 0.00 42.67 3.01
2639 2660 9.052759 GTTCACTTTTATAAGTCCTTGAAGACA 57.947 33.333 0.00 0.00 42.67 3.41
2640 2661 9.793259 TTCACTTTTATAAGTCCTTGAAGACAT 57.207 29.630 0.00 0.00 42.67 3.06
2641 2662 9.793259 TCACTTTTATAAGTCCTTGAAGACATT 57.207 29.630 0.00 0.00 42.67 2.71
2647 2668 7.913674 ATAAGTCCTTGAAGACATTTCAGAC 57.086 36.000 0.00 2.75 39.34 3.51
2648 2669 5.296151 AGTCCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 39.34 3.41
2649 2670 5.303971 AGTCCTTGAAGACATTTCAGACAG 58.696 41.667 0.00 0.00 39.34 3.51
2650 2671 4.067896 TCCTTGAAGACATTTCAGACAGC 58.932 43.478 0.00 0.00 0.00 4.40
2651 2672 3.817084 CCTTGAAGACATTTCAGACAGCA 59.183 43.478 0.00 0.00 0.00 4.41
2652 2673 4.458295 CCTTGAAGACATTTCAGACAGCAT 59.542 41.667 0.00 0.00 0.00 3.79
2653 2674 5.366829 TTGAAGACATTTCAGACAGCATG 57.633 39.130 0.00 0.00 46.00 4.06
2654 2675 3.189910 TGAAGACATTTCAGACAGCATGC 59.810 43.478 10.51 10.51 42.53 4.06
2655 2676 2.786777 AGACATTTCAGACAGCATGCA 58.213 42.857 21.98 0.00 42.53 3.96
2656 2677 3.151554 AGACATTTCAGACAGCATGCAA 58.848 40.909 21.98 3.36 42.53 4.08
2657 2678 3.570975 AGACATTTCAGACAGCATGCAAA 59.429 39.130 21.98 10.74 42.53 3.68
2658 2679 3.909430 ACATTTCAGACAGCATGCAAAG 58.091 40.909 21.98 11.80 42.53 2.77
2659 2680 2.427232 TTTCAGACAGCATGCAAAGC 57.573 45.000 21.98 6.10 42.53 3.51
2660 2681 1.320507 TTCAGACAGCATGCAAAGCA 58.679 45.000 21.98 0.00 42.53 3.91
2661 2682 0.879090 TCAGACAGCATGCAAAGCAG 59.121 50.000 21.98 10.62 43.65 4.24
2662 2683 0.732880 CAGACAGCATGCAAAGCAGC 60.733 55.000 21.98 1.58 43.65 5.25
2663 2684 1.445582 GACAGCATGCAAAGCAGCC 60.446 57.895 21.98 0.00 43.65 4.85
2664 2685 1.874345 GACAGCATGCAAAGCAGCCT 61.874 55.000 21.98 0.00 43.65 4.58
2665 2686 0.609957 ACAGCATGCAAAGCAGCCTA 60.610 50.000 21.98 0.00 43.65 3.93
2666 2687 0.744874 CAGCATGCAAAGCAGCCTAT 59.255 50.000 21.98 0.00 43.65 2.57
2667 2688 1.136305 CAGCATGCAAAGCAGCCTATT 59.864 47.619 21.98 0.00 43.65 1.73
2668 2689 1.829222 AGCATGCAAAGCAGCCTATTT 59.171 42.857 21.98 0.00 43.65 1.40
2669 2690 2.235402 AGCATGCAAAGCAGCCTATTTT 59.765 40.909 21.98 0.00 43.65 1.82
2670 2691 3.004862 GCATGCAAAGCAGCCTATTTTT 58.995 40.909 14.21 0.00 43.65 1.94
2671 2692 4.081531 AGCATGCAAAGCAGCCTATTTTTA 60.082 37.500 21.98 0.00 43.65 1.52
2672 2693 4.269363 GCATGCAAAGCAGCCTATTTTTAG 59.731 41.667 14.21 0.00 43.65 1.85
2673 2694 5.413499 CATGCAAAGCAGCCTATTTTTAGT 58.587 37.500 0.00 0.00 43.65 2.24
2674 2695 5.467035 TGCAAAGCAGCCTATTTTTAGTT 57.533 34.783 0.00 0.00 33.32 2.24
2675 2696 5.229423 TGCAAAGCAGCCTATTTTTAGTTG 58.771 37.500 0.00 0.00 33.32 3.16
2676 2697 5.221422 TGCAAAGCAGCCTATTTTTAGTTGT 60.221 36.000 0.00 0.00 33.32 3.32
2677 2698 5.346011 GCAAAGCAGCCTATTTTTAGTTGTC 59.654 40.000 0.00 0.00 0.00 3.18
2678 2699 6.681777 CAAAGCAGCCTATTTTTAGTTGTCT 58.318 36.000 0.00 0.00 0.00 3.41
2679 2700 5.886960 AGCAGCCTATTTTTAGTTGTCTG 57.113 39.130 0.00 0.00 0.00 3.51
2680 2701 5.560724 AGCAGCCTATTTTTAGTTGTCTGA 58.439 37.500 0.00 0.00 0.00 3.27
2681 2702 6.003950 AGCAGCCTATTTTTAGTTGTCTGAA 58.996 36.000 0.00 0.00 0.00 3.02
2682 2703 6.490040 AGCAGCCTATTTTTAGTTGTCTGAAA 59.510 34.615 0.00 0.00 0.00 2.69
2683 2704 7.177392 AGCAGCCTATTTTTAGTTGTCTGAAAT 59.823 33.333 0.00 0.00 31.12 2.17
2684 2705 7.274250 GCAGCCTATTTTTAGTTGTCTGAAATG 59.726 37.037 0.00 0.00 31.12 2.32
2685 2706 8.514594 CAGCCTATTTTTAGTTGTCTGAAATGA 58.485 33.333 0.00 0.00 31.12 2.57
2686 2707 8.515414 AGCCTATTTTTAGTTGTCTGAAATGAC 58.485 33.333 0.00 0.00 37.47 3.06
2687 2708 8.515414 GCCTATTTTTAGTTGTCTGAAATGACT 58.485 33.333 0.00 0.00 37.79 3.41
2706 2727 8.567285 AATGACTTATAAAAGTGAACTGAGGG 57.433 34.615 0.00 0.00 46.09 4.30
2707 2728 7.311092 TGACTTATAAAAGTGAACTGAGGGA 57.689 36.000 0.00 0.00 46.09 4.20
2708 2729 7.386851 TGACTTATAAAAGTGAACTGAGGGAG 58.613 38.462 0.00 0.00 46.09 4.30
2762 2783 6.486657 TGCTGAAACTATAACTTCTTGCTTGT 59.513 34.615 0.00 0.00 0.00 3.16
2887 2908 2.841442 AACCTCAGTGTACTTGCTCC 57.159 50.000 0.00 0.00 0.00 4.70
2903 2924 2.785269 TGCTCCATATGTTTCCCCATCT 59.215 45.455 1.24 0.00 0.00 2.90
2910 2931 7.361438 TCCATATGTTTCCCCATCTGTAAATT 58.639 34.615 1.24 0.00 0.00 1.82
2940 2961 7.405292 TGGGAATGTCAACTATTGAAGAAGAT 58.595 34.615 0.00 0.00 42.15 2.40
2968 2989 8.757982 AATGAACCTTATAAATCATGCTGAGT 57.242 30.769 8.17 0.00 33.06 3.41
2969 2990 8.757982 ATGAACCTTATAAATCATGCTGAGTT 57.242 30.769 7.08 4.70 38.33 3.01
2970 2991 8.579850 TGAACCTTATAAATCATGCTGAGTTT 57.420 30.769 4.62 3.18 36.07 2.66
2971 2992 9.023962 TGAACCTTATAAATCATGCTGAGTTTT 57.976 29.630 4.62 1.15 36.07 2.43
2972 2993 9.294030 GAACCTTATAAATCATGCTGAGTTTTG 57.706 33.333 4.62 0.00 36.07 2.44
2973 2994 8.353423 ACCTTATAAATCATGCTGAGTTTTGT 57.647 30.769 4.62 0.00 36.07 2.83
2974 2995 8.806146 ACCTTATAAATCATGCTGAGTTTTGTT 58.194 29.630 4.62 0.00 36.07 2.83
2975 2996 9.294030 CCTTATAAATCATGCTGAGTTTTGTTC 57.706 33.333 4.62 0.00 36.07 3.18
2976 2997 9.294030 CTTATAAATCATGCTGAGTTTTGTTCC 57.706 33.333 4.62 0.00 36.07 3.62
2977 2998 5.534207 AAATCATGCTGAGTTTTGTTCCA 57.466 34.783 0.00 0.00 29.57 3.53
2979 3000 2.886523 TCATGCTGAGTTTTGTTCCAGG 59.113 45.455 0.00 0.00 0.00 4.45
2980 3001 2.727123 TGCTGAGTTTTGTTCCAGGA 57.273 45.000 0.00 0.00 0.00 3.86
2981 3002 3.011566 TGCTGAGTTTTGTTCCAGGAA 57.988 42.857 0.00 0.00 0.00 3.36
2982 3003 3.565307 TGCTGAGTTTTGTTCCAGGAAT 58.435 40.909 4.80 0.00 0.00 3.01
2983 3004 4.724399 TGCTGAGTTTTGTTCCAGGAATA 58.276 39.130 4.80 0.00 0.00 1.75
2984 3005 5.324409 TGCTGAGTTTTGTTCCAGGAATAT 58.676 37.500 4.80 0.00 0.00 1.28
2985 3006 5.774690 TGCTGAGTTTTGTTCCAGGAATATT 59.225 36.000 4.80 0.00 0.00 1.28
2986 3007 6.945435 TGCTGAGTTTTGTTCCAGGAATATTA 59.055 34.615 4.80 0.00 0.00 0.98
2987 3008 7.450014 TGCTGAGTTTTGTTCCAGGAATATTAA 59.550 33.333 4.80 0.00 0.00 1.40
2988 3009 8.303876 GCTGAGTTTTGTTCCAGGAATATTAAA 58.696 33.333 4.80 0.00 0.00 1.52
3163 3185 5.297776 TGAGCAGAAAGAGAAGAACAAAAGG 59.702 40.000 0.00 0.00 0.00 3.11
3256 3281 4.448537 TGGCTGCTTTTTGCGTAATAAT 57.551 36.364 0.00 0.00 46.63 1.28
3532 3561 9.598517 TCTGTGCAATTTCTTTCACTTTATTTT 57.401 25.926 0.00 0.00 0.00 1.82
3938 3968 7.872138 TGGAAATTCCACAGAGGTAATTCTAT 58.128 34.615 11.23 0.00 42.67 1.98
3945 3975 5.525378 CCACAGAGGTAATTCTATTGTGCTC 59.475 44.000 0.00 0.00 34.16 4.26
4021 4051 4.981812 TCTCATCTTTGATCATGGATGGG 58.018 43.478 25.05 23.68 37.84 4.00
4058 4088 7.652300 CAGTTATAGCACAACTGTTTCTGTA 57.348 36.000 13.84 0.00 45.06 2.74
4059 4089 8.083462 CAGTTATAGCACAACTGTTTCTGTAA 57.917 34.615 13.84 0.00 45.06 2.41
4094 4124 1.393539 CATAAACGAGGCCACTTGTCG 59.606 52.381 5.01 7.80 40.52 4.35
4095 4125 0.320073 TAAACGAGGCCACTTGTCGG 60.320 55.000 14.92 0.00 40.52 4.79
4147 4177 8.542926 TCTTGATCTAAACCATCAAATCTCTCA 58.457 33.333 0.00 0.00 39.28 3.27
4161 4191 3.309961 TCTCTCATCAACAGCTCACAC 57.690 47.619 0.00 0.00 0.00 3.82
4172 4202 2.408050 CAGCTCACACTGTACTTGGAC 58.592 52.381 0.00 0.00 32.78 4.02
4248 4278 8.680903 ACCTCATTAATTGCTTCTTGATTACAG 58.319 33.333 0.00 0.00 0.00 2.74
4316 4355 7.780008 TGAAGTATTTCACGAGAAAAGAACA 57.220 32.000 12.02 6.76 46.06 3.18
4387 4426 2.547913 TGCTAGAAACATGCATTGCG 57.452 45.000 0.00 0.00 0.00 4.85
4390 4429 3.181511 TGCTAGAAACATGCATTGCGTAC 60.182 43.478 2.41 0.00 0.00 3.67
4440 4481 5.071115 AGGCTGGAGGATTTCACTAATAGTC 59.929 44.000 0.00 0.00 0.00 2.59
4456 4497 7.379797 CACTAATAGTCGACACATCATACTTGG 59.620 40.741 19.50 0.32 0.00 3.61
4503 4544 9.467030 AGAATCTTCCCTAATTTATTACTCCCT 57.533 33.333 0.00 0.00 0.00 4.20
4504 4545 9.727859 GAATCTTCCCTAATTTATTACTCCCTC 57.272 37.037 0.00 0.00 0.00 4.30
4505 4546 7.628501 TCTTCCCTAATTTATTACTCCCTCC 57.371 40.000 0.00 0.00 0.00 4.30
4506 4547 6.269307 TCTTCCCTAATTTATTACTCCCTCCG 59.731 42.308 0.00 0.00 0.00 4.63
4507 4548 5.470501 TCCCTAATTTATTACTCCCTCCGT 58.529 41.667 0.00 0.00 0.00 4.69
4508 4549 5.541484 TCCCTAATTTATTACTCCCTCCGTC 59.459 44.000 0.00 0.00 0.00 4.79
4509 4550 5.279859 CCCTAATTTATTACTCCCTCCGTCC 60.280 48.000 0.00 0.00 0.00 4.79
4510 4551 4.701651 AATTTATTACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
4511 4552 2.852714 TTATTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
4512 4553 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
4513 4554 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
4514 4555 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
4515 4556 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4516 4557 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4517 4558 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4518 4559 2.850568 ACTCCCTCCGTCCCAAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
4519 4560 3.268595 ACTCCCTCCGTCCCAAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
4520 4561 3.626930 TCCCTCCGTCCCAAAATAATTG 58.373 45.455 0.00 0.00 0.00 2.32
4521 4562 3.010808 TCCCTCCGTCCCAAAATAATTGT 59.989 43.478 0.00 0.00 0.00 2.71
4522 4563 3.380320 CCCTCCGTCCCAAAATAATTGTC 59.620 47.826 0.00 0.00 0.00 3.18
4523 4564 4.270008 CCTCCGTCCCAAAATAATTGTCT 58.730 43.478 0.00 0.00 0.00 3.41
4524 4565 4.705023 CCTCCGTCCCAAAATAATTGTCTT 59.295 41.667 0.00 0.00 0.00 3.01
4525 4566 5.883673 CCTCCGTCCCAAAATAATTGTCTTA 59.116 40.000 0.00 0.00 0.00 2.10
4526 4567 6.183360 CCTCCGTCCCAAAATAATTGTCTTAC 60.183 42.308 0.00 0.00 0.00 2.34
4527 4568 5.648960 TCCGTCCCAAAATAATTGTCTTACC 59.351 40.000 0.00 0.00 0.00 2.85
4528 4569 5.650703 CCGTCCCAAAATAATTGTCTTACCT 59.349 40.000 0.00 0.00 0.00 3.08
4529 4570 6.152154 CCGTCCCAAAATAATTGTCTTACCTT 59.848 38.462 0.00 0.00 0.00 3.50
4530 4571 7.309560 CCGTCCCAAAATAATTGTCTTACCTTT 60.310 37.037 0.00 0.00 0.00 3.11
4531 4572 7.540745 CGTCCCAAAATAATTGTCTTACCTTTG 59.459 37.037 0.00 0.00 0.00 2.77
4532 4573 8.364894 GTCCCAAAATAATTGTCTTACCTTTGT 58.635 33.333 0.00 0.00 0.00 2.83
4533 4574 9.589461 TCCCAAAATAATTGTCTTACCTTTGTA 57.411 29.630 0.00 0.00 0.00 2.41
4534 4575 9.634163 CCCAAAATAATTGTCTTACCTTTGTAC 57.366 33.333 0.00 0.00 0.00 2.90
4540 4581 9.819267 ATAATTGTCTTACCTTTGTACTAGCTC 57.181 33.333 0.00 0.00 0.00 4.09
4541 4582 6.912951 TTGTCTTACCTTTGTACTAGCTCT 57.087 37.500 0.00 0.00 0.00 4.09
4542 4583 8.591114 ATTGTCTTACCTTTGTACTAGCTCTA 57.409 34.615 0.00 0.00 0.00 2.43
4543 4584 7.627298 TGTCTTACCTTTGTACTAGCTCTAG 57.373 40.000 0.00 2.55 39.04 2.43
4545 4586 8.324306 TGTCTTACCTTTGTACTAGCTCTAGTA 58.676 37.037 11.59 11.59 43.98 1.82
4562 4603 9.411189 AGCTCTAGTACAAAGTTATACTAAGCT 57.589 33.333 20.82 20.82 39.80 3.74
4563 4604 9.667989 GCTCTAGTACAAAGTTATACTAAGCTC 57.332 37.037 19.03 6.78 36.45 4.09
4564 4605 9.866936 CTCTAGTACAAAGTTATACTAAGCTCG 57.133 37.037 0.00 0.00 34.33 5.03
4565 4606 9.605275 TCTAGTACAAAGTTATACTAAGCTCGA 57.395 33.333 0.00 0.00 34.33 4.04
4566 4607 9.866936 CTAGTACAAAGTTATACTAAGCTCGAG 57.133 37.037 8.45 8.45 34.33 4.04
4567 4608 8.503458 AGTACAAAGTTATACTAAGCTCGAGA 57.497 34.615 18.75 0.00 29.70 4.04
4568 4609 8.397148 AGTACAAAGTTATACTAAGCTCGAGAC 58.603 37.037 18.75 7.74 29.70 3.36
4569 4610 7.154435 ACAAAGTTATACTAAGCTCGAGACA 57.846 36.000 18.75 0.00 0.00 3.41
4570 4611 7.028361 ACAAAGTTATACTAAGCTCGAGACAC 58.972 38.462 18.75 0.00 0.00 3.67
4571 4612 7.094291 ACAAAGTTATACTAAGCTCGAGACACT 60.094 37.037 18.75 0.00 0.00 3.55
4572 4613 7.393841 AAGTTATACTAAGCTCGAGACACTT 57.606 36.000 18.75 12.59 0.00 3.16
4573 4614 8.503458 AAGTTATACTAAGCTCGAGACACTTA 57.497 34.615 18.75 13.07 0.00 2.24
4574 4615 8.680039 AGTTATACTAAGCTCGAGACACTTAT 57.320 34.615 18.75 8.83 0.00 1.73
4575 4616 9.122779 AGTTATACTAAGCTCGAGACACTTATT 57.877 33.333 18.75 10.83 0.00 1.40
4576 4617 9.733219 GTTATACTAAGCTCGAGACACTTATTT 57.267 33.333 18.75 7.10 0.00 1.40
4578 4619 6.952935 ACTAAGCTCGAGACACTTATTTTG 57.047 37.500 18.75 5.38 0.00 2.44
4579 4620 5.869888 ACTAAGCTCGAGACACTTATTTTGG 59.130 40.000 18.75 5.04 0.00 3.28
4580 4621 3.600388 AGCTCGAGACACTTATTTTGGG 58.400 45.455 18.75 0.00 0.00 4.12
4581 4622 3.260884 AGCTCGAGACACTTATTTTGGGA 59.739 43.478 18.75 0.00 0.00 4.37
4582 4623 3.371285 GCTCGAGACACTTATTTTGGGAC 59.629 47.826 18.75 0.00 0.00 4.46
4583 4624 3.581755 TCGAGACACTTATTTTGGGACG 58.418 45.455 0.00 0.00 0.00 4.79
4584 4625 2.671396 CGAGACACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 0.00 4.79
4585 4626 3.615592 CGAGACACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 0.00 4.69
4586 4627 4.320870 GAGACACTTATTTTGGGACGGAA 58.679 43.478 0.00 0.00 0.00 4.30
4587 4628 4.324267 AGACACTTATTTTGGGACGGAAG 58.676 43.478 0.00 0.00 0.00 3.46
4588 4629 3.418047 ACACTTATTTTGGGACGGAAGG 58.582 45.455 0.00 0.00 0.00 3.46
4589 4630 3.073356 ACACTTATTTTGGGACGGAAGGA 59.927 43.478 0.00 0.00 0.00 3.36
4590 4631 3.689649 CACTTATTTTGGGACGGAAGGAG 59.310 47.826 0.00 0.00 0.00 3.69
4591 4632 3.329814 ACTTATTTTGGGACGGAAGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
4592 4633 4.533311 ACTTATTTTGGGACGGAAGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
4593 4634 2.845363 TTTTGGGACGGAAGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4594 4635 2.019807 TTTGGGACGGAAGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
4603 4644 3.190118 ACGGAAGGAGTACTACGTTTCTG 59.810 47.826 12.34 12.34 39.06 3.02
4615 4656 2.607187 ACGTTTCTGAATACTCGCCTG 58.393 47.619 0.00 0.00 0.00 4.85
4763 5023 6.966435 AATGCATTAATACAAAACAGGTGC 57.034 33.333 11.02 0.00 0.00 5.01
4785 5045 5.066634 TGCCAACGTTTAACTTGAAAGATCA 59.933 36.000 0.00 0.00 0.00 2.92
4888 5148 7.262772 TCTTCAAAATATGGGACTACTACGTG 58.737 38.462 0.00 0.00 0.00 4.49
4901 5161 5.700846 ACTACTACGTGATGTTCTGAACAG 58.299 41.667 25.40 15.51 45.95 3.16
5253 5513 5.812642 CACTCGTCTTGCTCAGGTAAATAAT 59.187 40.000 0.00 0.00 0.00 1.28
5258 5518 8.662141 TCGTCTTGCTCAGGTAAATAATAAAAC 58.338 33.333 0.00 0.00 0.00 2.43
5259 5519 7.634817 CGTCTTGCTCAGGTAAATAATAAAACG 59.365 37.037 0.00 0.00 0.00 3.60
5260 5520 8.448615 GTCTTGCTCAGGTAAATAATAAAACGT 58.551 33.333 0.00 0.00 0.00 3.99
5262 5522 9.916397 CTTGCTCAGGTAAATAATAAAACGTAG 57.084 33.333 0.00 0.00 0.00 3.51
5263 5523 8.428186 TGCTCAGGTAAATAATAAAACGTAGG 57.572 34.615 0.00 0.00 0.00 3.18
5264 5524 8.042515 TGCTCAGGTAAATAATAAAACGTAGGT 58.957 33.333 0.00 0.00 0.00 3.08
5268 5528 9.763465 CAGGTAAATAATAAAACGTAGGTTGTG 57.237 33.333 0.79 0.00 36.25 3.33
5269 5529 9.506018 AGGTAAATAATAAAACGTAGGTTGTGT 57.494 29.630 0.79 0.00 36.25 3.72
5270 5530 9.545611 GGTAAATAATAAAACGTAGGTTGTGTG 57.454 33.333 0.79 0.00 36.25 3.82
5282 5542 6.377996 ACGTAGGTTGTGTGTTATATACCTCA 59.622 38.462 0.00 0.00 37.24 3.86
5494 5754 1.450312 GGAGGATGACGGCAAGGTG 60.450 63.158 0.00 0.00 0.00 4.00
5554 5814 2.479730 CGCGACCAAAGACTGTATAGCT 60.480 50.000 0.00 0.00 0.00 3.32
5566 5826 7.072263 AGACTGTATAGCTAAAGGCATCAAT 57.928 36.000 0.00 0.00 44.79 2.57
5575 5835 3.033746 AGGCATCAATGACTCCCCT 57.966 52.632 0.00 0.00 44.60 4.79
5576 5836 0.549950 AGGCATCAATGACTCCCCTG 59.450 55.000 0.00 0.00 44.60 4.45
5577 5837 0.466922 GGCATCAATGACTCCCCTGG 60.467 60.000 0.00 0.00 31.49 4.45
5718 5981 9.732130 AAAAACAGTAGAAGCTTGAATCTCTAT 57.268 29.630 2.10 0.00 0.00 1.98
5719 5982 9.732130 AAAACAGTAGAAGCTTGAATCTCTATT 57.268 29.630 2.10 0.00 0.00 1.73
5872 6140 3.495453 GGTGCAGTGGGTTTACTTACTGA 60.495 47.826 15.87 4.50 42.28 3.41
5894 6162 5.046663 TGACAGTCATCATAAGCACTAACCA 60.047 40.000 0.00 0.00 0.00 3.67
5975 6243 9.561069 AGAAACAACAGTCATAACTCATAAAGT 57.439 29.630 0.00 0.00 41.10 2.66
6010 6279 3.586100 AAACCGTAATTTGTCATGGCC 57.414 42.857 0.00 0.00 0.00 5.36
6016 6285 3.619483 CGTAATTTGTCATGGCCGTAAGA 59.381 43.478 0.00 0.00 43.02 2.10
6031 6300 4.213482 GCCGTAAGACAACAAGTTTGATCT 59.787 41.667 0.00 0.00 43.02 2.75
6032 6301 5.407387 GCCGTAAGACAACAAGTTTGATCTA 59.593 40.000 0.00 0.00 43.02 1.98
6033 6302 6.073440 GCCGTAAGACAACAAGTTTGATCTAA 60.073 38.462 0.00 0.00 43.02 2.10
6041 6325 8.621532 ACAACAAGTTTGATCTAAGCAAGATA 57.378 30.769 1.88 0.00 45.35 1.98
6097 6412 1.595311 ATGGTTGTCATGGCTCCCTA 58.405 50.000 0.00 0.00 34.22 3.53
6143 6459 2.744202 GCCTTTCGGATGCTATACATGG 59.256 50.000 0.00 0.00 39.84 3.66
6259 6575 7.280652 GGAATTTTGGTGGTATCATTCATTTGG 59.719 37.037 0.00 0.00 0.00 3.28
6260 6576 6.678568 TTTTGGTGGTATCATTCATTTGGT 57.321 33.333 0.00 0.00 0.00 3.67
6261 6577 7.782897 TTTTGGTGGTATCATTCATTTGGTA 57.217 32.000 0.00 0.00 0.00 3.25
6262 6578 6.767524 TTGGTGGTATCATTCATTTGGTAC 57.232 37.500 0.00 0.00 33.31 3.34
6263 6579 5.821097 TGGTGGTATCATTCATTTGGTACA 58.179 37.500 0.00 0.00 35.34 2.90
6275 6591 3.828418 TGGTACAAGGACCCTCCAT 57.172 52.632 0.00 0.00 39.61 3.41
6276 6592 2.953093 TGGTACAAGGACCCTCCATA 57.047 50.000 0.00 0.00 39.61 2.74
6320 6653 7.700022 AGAAGTACTACGGAACTCTGTAAAT 57.300 36.000 0.00 0.00 37.27 1.40
6526 6868 1.331756 CCTATTACCAGCTTGCTTGCG 59.668 52.381 0.00 0.00 38.13 4.85
6579 6921 8.865590 TTGTGGAACTAATTTTAAAACAGAGC 57.134 30.769 15.04 8.18 38.04 4.09
6656 6998 5.108517 GCAACAAACTGAACCAAATCTTGA 58.891 37.500 0.00 0.00 0.00 3.02
6694 7038 1.164411 TTGGTTAGTCCTGCAATGCG 58.836 50.000 0.00 0.00 37.07 4.73
6696 7040 1.429423 GTTAGTCCTGCAATGCGCC 59.571 57.895 4.18 0.00 41.33 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.403583 AGAAGAAACAAGAAACACTGGTTATTA 57.596 29.630 0.00 0.00 41.42 0.98
1 2 8.293699 AGAAGAAACAAGAAACACTGGTTATT 57.706 30.769 0.00 0.00 41.42 1.40
2 3 7.881775 AGAAGAAACAAGAAACACTGGTTAT 57.118 32.000 0.00 0.00 41.42 1.89
3 4 8.974060 ATAGAAGAAACAAGAAACACTGGTTA 57.026 30.769 0.00 0.00 41.42 2.85
4 5 7.013369 GGATAGAAGAAACAAGAAACACTGGTT 59.987 37.037 0.00 0.00 43.84 3.67
5 6 6.486993 GGATAGAAGAAACAAGAAACACTGGT 59.513 38.462 0.00 0.00 33.59 4.00
6 7 6.486657 TGGATAGAAGAAACAAGAAACACTGG 59.513 38.462 0.00 0.00 0.00 4.00
7 8 7.355778 GTGGATAGAAGAAACAAGAAACACTG 58.644 38.462 0.00 0.00 0.00 3.66
8 9 6.202954 CGTGGATAGAAGAAACAAGAAACACT 59.797 38.462 0.00 0.00 0.00 3.55
9 10 6.202188 TCGTGGATAGAAGAAACAAGAAACAC 59.798 38.462 0.00 0.00 0.00 3.32
10 11 6.285224 TCGTGGATAGAAGAAACAAGAAACA 58.715 36.000 0.00 0.00 0.00 2.83
11 12 6.780706 TCGTGGATAGAAGAAACAAGAAAC 57.219 37.500 0.00 0.00 0.00 2.78
12 13 7.274904 CGTATCGTGGATAGAAGAAACAAGAAA 59.725 37.037 0.00 0.00 0.00 2.52
13 14 6.750501 CGTATCGTGGATAGAAGAAACAAGAA 59.249 38.462 0.00 0.00 0.00 2.52
14 15 6.127814 ACGTATCGTGGATAGAAGAAACAAGA 60.128 38.462 0.00 0.00 39.18 3.02
15 16 6.034591 ACGTATCGTGGATAGAAGAAACAAG 58.965 40.000 0.00 0.00 39.18 3.16
16 17 5.957798 ACGTATCGTGGATAGAAGAAACAA 58.042 37.500 0.00 0.00 39.18 2.83
17 18 5.124297 TGACGTATCGTGGATAGAAGAAACA 59.876 40.000 0.00 0.00 41.37 2.83
18 19 5.575957 TGACGTATCGTGGATAGAAGAAAC 58.424 41.667 0.00 0.00 41.37 2.78
19 20 5.356190 ACTGACGTATCGTGGATAGAAGAAA 59.644 40.000 0.00 0.00 41.37 2.52
20 21 4.880120 ACTGACGTATCGTGGATAGAAGAA 59.120 41.667 0.00 0.00 41.37 2.52
21 22 4.272748 CACTGACGTATCGTGGATAGAAGA 59.727 45.833 0.00 0.00 41.37 2.87
22 23 4.272748 TCACTGACGTATCGTGGATAGAAG 59.727 45.833 10.31 0.00 41.37 2.85
23 24 4.193865 TCACTGACGTATCGTGGATAGAA 58.806 43.478 10.31 0.00 41.37 2.10
24 25 3.800531 TCACTGACGTATCGTGGATAGA 58.199 45.455 10.31 0.00 41.37 1.98
25 26 4.547406 TTCACTGACGTATCGTGGATAG 57.453 45.455 10.31 0.00 41.37 2.08
26 27 5.509716 AATTCACTGACGTATCGTGGATA 57.490 39.130 10.31 0.00 41.37 2.59
27 28 4.386867 AATTCACTGACGTATCGTGGAT 57.613 40.909 10.31 5.67 41.37 3.41
28 29 3.861276 AATTCACTGACGTATCGTGGA 57.139 42.857 10.31 3.76 41.37 4.02
29 30 3.924073 TCAAATTCACTGACGTATCGTGG 59.076 43.478 10.31 0.00 41.37 4.94
30 31 5.702622 ATCAAATTCACTGACGTATCGTG 57.297 39.130 0.00 0.00 41.37 4.35
31 32 6.534059 CAAATCAAATTCACTGACGTATCGT 58.466 36.000 0.00 0.00 45.10 3.73
32 33 5.449113 GCAAATCAAATTCACTGACGTATCG 59.551 40.000 0.00 0.00 0.00 2.92
33 34 6.314018 TGCAAATCAAATTCACTGACGTATC 58.686 36.000 0.00 0.00 0.00 2.24
34 35 6.252967 TGCAAATCAAATTCACTGACGTAT 57.747 33.333 0.00 0.00 0.00 3.06
35 36 5.681337 TGCAAATCAAATTCACTGACGTA 57.319 34.783 0.00 0.00 0.00 3.57
36 37 4.539870 CTGCAAATCAAATTCACTGACGT 58.460 39.130 0.00 0.00 0.00 4.34
37 38 3.362831 GCTGCAAATCAAATTCACTGACG 59.637 43.478 0.00 0.00 0.00 4.35
38 39 4.553323 AGCTGCAAATCAAATTCACTGAC 58.447 39.130 1.02 0.00 0.00 3.51
39 40 4.614306 CGAGCTGCAAATCAAATTCACTGA 60.614 41.667 1.02 0.00 0.00 3.41
40 41 3.606777 CGAGCTGCAAATCAAATTCACTG 59.393 43.478 1.02 0.00 0.00 3.66
41 42 3.503363 TCGAGCTGCAAATCAAATTCACT 59.497 39.130 1.02 0.00 0.00 3.41
42 43 3.825308 TCGAGCTGCAAATCAAATTCAC 58.175 40.909 1.02 0.00 0.00 3.18
43 44 4.229096 GTTCGAGCTGCAAATCAAATTCA 58.771 39.130 1.02 0.00 0.00 2.57
44 45 3.299020 CGTTCGAGCTGCAAATCAAATTC 59.701 43.478 1.02 0.00 0.00 2.17
45 46 3.236816 CGTTCGAGCTGCAAATCAAATT 58.763 40.909 1.02 0.00 0.00 1.82
46 47 2.226437 ACGTTCGAGCTGCAAATCAAAT 59.774 40.909 1.02 0.00 0.00 2.32
47 48 1.601903 ACGTTCGAGCTGCAAATCAAA 59.398 42.857 1.02 0.00 0.00 2.69
48 49 1.069973 CACGTTCGAGCTGCAAATCAA 60.070 47.619 1.02 0.00 0.00 2.57
49 50 0.512518 CACGTTCGAGCTGCAAATCA 59.487 50.000 1.02 0.00 0.00 2.57
50 51 0.512952 ACACGTTCGAGCTGCAAATC 59.487 50.000 1.02 0.00 0.00 2.17
51 52 0.512952 GACACGTTCGAGCTGCAAAT 59.487 50.000 1.02 0.00 0.00 2.32
52 53 0.808060 TGACACGTTCGAGCTGCAAA 60.808 50.000 1.02 0.00 0.00 3.68
53 54 0.599991 ATGACACGTTCGAGCTGCAA 60.600 50.000 1.02 0.00 0.00 4.08
54 55 1.006220 ATGACACGTTCGAGCTGCA 60.006 52.632 1.02 0.00 0.00 4.41
55 56 1.687494 GGATGACACGTTCGAGCTGC 61.687 60.000 0.00 0.00 0.00 5.25
56 57 1.406219 CGGATGACACGTTCGAGCTG 61.406 60.000 0.00 0.00 0.00 4.24
57 58 1.154016 CGGATGACACGTTCGAGCT 60.154 57.895 0.00 0.00 0.00 4.09
58 59 1.443872 ACGGATGACACGTTCGAGC 60.444 57.895 0.00 0.00 42.70 5.03
59 60 1.674611 GCACGGATGACACGTTCGAG 61.675 60.000 0.00 0.00 43.58 4.04
60 61 1.731613 GCACGGATGACACGTTCGA 60.732 57.895 0.00 0.00 43.58 3.71
61 62 1.282248 AAGCACGGATGACACGTTCG 61.282 55.000 0.00 0.00 43.58 3.95
62 63 0.438830 GAAGCACGGATGACACGTTC 59.561 55.000 0.00 0.00 43.58 3.95
63 64 0.949105 GGAAGCACGGATGACACGTT 60.949 55.000 0.00 0.00 43.58 3.99
64 65 1.374252 GGAAGCACGGATGACACGT 60.374 57.895 0.00 0.00 46.82 4.49
65 66 1.354337 CTGGAAGCACGGATGACACG 61.354 60.000 0.00 0.00 37.36 4.49
66 67 0.320771 ACTGGAAGCACGGATGACAC 60.321 55.000 0.00 0.00 37.60 3.67
67 68 0.396435 AACTGGAAGCACGGATGACA 59.604 50.000 0.00 0.00 37.60 3.58
68 69 1.523758 AAACTGGAAGCACGGATGAC 58.476 50.000 0.00 0.00 37.60 3.06
69 70 1.879380 CAAAACTGGAAGCACGGATGA 59.121 47.619 0.00 0.00 37.60 2.92
70 71 1.608590 ACAAAACTGGAAGCACGGATG 59.391 47.619 0.00 0.00 37.60 3.51
71 72 1.981256 ACAAAACTGGAAGCACGGAT 58.019 45.000 0.00 0.00 37.60 4.18
72 73 1.673920 GAACAAAACTGGAAGCACGGA 59.326 47.619 0.00 0.00 37.60 4.69
73 74 1.269051 GGAACAAAACTGGAAGCACGG 60.269 52.381 0.00 0.00 37.60 4.94
74 75 1.676006 AGGAACAAAACTGGAAGCACG 59.324 47.619 0.00 0.00 37.60 5.34
75 76 3.801114 AAGGAACAAAACTGGAAGCAC 57.199 42.857 0.00 0.00 37.60 4.40
76 77 4.382577 GGAAAAGGAACAAAACTGGAAGCA 60.383 41.667 0.00 0.00 37.60 3.91
77 78 4.119862 GGAAAAGGAACAAAACTGGAAGC 58.880 43.478 0.00 0.00 37.60 3.86
78 79 4.442893 GGGGAAAAGGAACAAAACTGGAAG 60.443 45.833 0.00 0.00 42.29 3.46
79 80 3.452990 GGGGAAAAGGAACAAAACTGGAA 59.547 43.478 0.00 0.00 0.00 3.53
80 81 3.035363 GGGGAAAAGGAACAAAACTGGA 58.965 45.455 0.00 0.00 0.00 3.86
81 82 3.038280 AGGGGAAAAGGAACAAAACTGG 58.962 45.455 0.00 0.00 0.00 4.00
82 83 4.753516 AAGGGGAAAAGGAACAAAACTG 57.246 40.909 0.00 0.00 0.00 3.16
83 84 4.142026 CGAAAGGGGAAAAGGAACAAAACT 60.142 41.667 0.00 0.00 0.00 2.66
84 85 4.116961 CGAAAGGGGAAAAGGAACAAAAC 58.883 43.478 0.00 0.00 0.00 2.43
85 86 4.024670 TCGAAAGGGGAAAAGGAACAAAA 58.975 39.130 0.00 0.00 0.00 2.44
86 87 3.633418 TCGAAAGGGGAAAAGGAACAAA 58.367 40.909 0.00 0.00 0.00 2.83
87 88 3.300239 TCGAAAGGGGAAAAGGAACAA 57.700 42.857 0.00 0.00 0.00 2.83
88 89 3.300239 TTCGAAAGGGGAAAAGGAACA 57.700 42.857 0.00 0.00 0.00 3.18
89 90 4.866508 AATTCGAAAGGGGAAAAGGAAC 57.133 40.909 0.00 0.00 0.00 3.62
90 91 6.249951 TCATAATTCGAAAGGGGAAAAGGAA 58.750 36.000 0.00 0.00 0.00 3.36
91 92 5.822204 TCATAATTCGAAAGGGGAAAAGGA 58.178 37.500 0.00 0.00 0.00 3.36
92 93 5.067805 CCTCATAATTCGAAAGGGGAAAAGG 59.932 44.000 0.00 0.00 0.00 3.11
93 94 5.450550 GCCTCATAATTCGAAAGGGGAAAAG 60.451 44.000 13.38 0.58 0.00 2.27
94 95 4.401202 GCCTCATAATTCGAAAGGGGAAAA 59.599 41.667 13.38 0.00 0.00 2.29
95 96 3.951680 GCCTCATAATTCGAAAGGGGAAA 59.048 43.478 13.38 0.00 0.00 3.13
96 97 3.202151 AGCCTCATAATTCGAAAGGGGAA 59.798 43.478 13.38 0.00 0.00 3.97
97 98 2.777692 AGCCTCATAATTCGAAAGGGGA 59.222 45.455 13.38 4.37 0.00 4.81
98 99 3.142174 GAGCCTCATAATTCGAAAGGGG 58.858 50.000 13.38 9.24 0.00 4.79
99 100 3.561725 GTGAGCCTCATAATTCGAAAGGG 59.438 47.826 13.38 6.15 0.00 3.95
100 101 3.561725 GGTGAGCCTCATAATTCGAAAGG 59.438 47.826 0.00 5.08 0.00 3.11
101 102 3.246226 CGGTGAGCCTCATAATTCGAAAG 59.754 47.826 0.00 0.00 0.00 2.62
102 103 3.194861 CGGTGAGCCTCATAATTCGAAA 58.805 45.455 0.00 0.00 0.00 3.46
103 104 2.167693 ACGGTGAGCCTCATAATTCGAA 59.832 45.455 0.00 0.00 0.00 3.71
104 105 1.754803 ACGGTGAGCCTCATAATTCGA 59.245 47.619 0.00 0.00 0.00 3.71
105 106 2.128035 GACGGTGAGCCTCATAATTCG 58.872 52.381 0.00 0.66 0.00 3.34
106 107 2.484889 GGACGGTGAGCCTCATAATTC 58.515 52.381 0.00 0.00 0.00 2.17
107 108 1.141053 GGGACGGTGAGCCTCATAATT 59.859 52.381 0.00 0.00 0.00 1.40
108 109 0.759346 GGGACGGTGAGCCTCATAAT 59.241 55.000 0.00 0.00 0.00 1.28
109 110 1.335132 GGGGACGGTGAGCCTCATAA 61.335 60.000 0.00 0.00 0.00 1.90
110 111 1.760875 GGGGACGGTGAGCCTCATA 60.761 63.158 0.00 0.00 0.00 2.15
111 112 3.083997 GGGGACGGTGAGCCTCAT 61.084 66.667 0.00 0.00 0.00 2.90
126 127 3.197333 TGTCATGCAAATGTAATTGGGGG 59.803 43.478 0.00 0.00 36.10 5.40
127 128 4.183101 GTGTCATGCAAATGTAATTGGGG 58.817 43.478 0.00 0.00 36.10 4.96
128 129 3.858812 CGTGTCATGCAAATGTAATTGGG 59.141 43.478 0.00 0.00 36.10 4.12
129 130 3.858812 CCGTGTCATGCAAATGTAATTGG 59.141 43.478 0.00 0.00 36.10 3.16
130 131 4.731720 TCCGTGTCATGCAAATGTAATTG 58.268 39.130 0.00 0.00 36.10 2.32
131 132 5.581126 ATCCGTGTCATGCAAATGTAATT 57.419 34.783 0.00 0.00 38.98 1.40
132 133 6.094742 TGTTATCCGTGTCATGCAAATGTAAT 59.905 34.615 0.00 0.00 0.00 1.89
133 134 5.412904 TGTTATCCGTGTCATGCAAATGTAA 59.587 36.000 0.00 0.00 0.00 2.41
134 135 4.938226 TGTTATCCGTGTCATGCAAATGTA 59.062 37.500 0.00 0.00 0.00 2.29
135 136 3.755905 TGTTATCCGTGTCATGCAAATGT 59.244 39.130 0.00 0.00 0.00 2.71
136 137 4.097714 GTGTTATCCGTGTCATGCAAATG 58.902 43.478 0.00 0.00 0.00 2.32
137 138 3.755905 TGTGTTATCCGTGTCATGCAAAT 59.244 39.130 0.00 0.00 0.00 2.32
138 139 3.058570 GTGTGTTATCCGTGTCATGCAAA 60.059 43.478 0.00 0.00 0.00 3.68
139 140 2.482336 GTGTGTTATCCGTGTCATGCAA 59.518 45.455 0.00 0.00 0.00 4.08
140 141 2.073056 GTGTGTTATCCGTGTCATGCA 58.927 47.619 0.00 0.00 0.00 3.96
141 142 2.073056 TGTGTGTTATCCGTGTCATGC 58.927 47.619 0.00 0.00 0.00 4.06
142 143 3.063485 TGTGTGTGTTATCCGTGTCATG 58.937 45.455 0.00 0.00 0.00 3.07
143 144 3.394674 TGTGTGTGTTATCCGTGTCAT 57.605 42.857 0.00 0.00 0.00 3.06
144 145 2.892784 TGTGTGTGTTATCCGTGTCA 57.107 45.000 0.00 0.00 0.00 3.58
145 146 4.378046 GGATTTGTGTGTGTTATCCGTGTC 60.378 45.833 0.00 0.00 0.00 3.67
146 147 3.500680 GGATTTGTGTGTGTTATCCGTGT 59.499 43.478 0.00 0.00 0.00 4.49
147 148 3.119990 GGGATTTGTGTGTGTTATCCGTG 60.120 47.826 0.00 0.00 36.46 4.94
148 149 3.078837 GGGATTTGTGTGTGTTATCCGT 58.921 45.455 0.00 0.00 36.46 4.69
149 150 3.078097 TGGGATTTGTGTGTGTTATCCG 58.922 45.455 0.00 0.00 36.46 4.18
150 151 4.079253 ACTGGGATTTGTGTGTGTTATCC 58.921 43.478 0.00 0.00 35.18 2.59
151 152 5.705609 AACTGGGATTTGTGTGTGTTATC 57.294 39.130 0.00 0.00 0.00 1.75
197 198 4.965200 AACCTATAGACTGAAGGGATGC 57.035 45.455 0.00 0.00 34.52 3.91
210 211 7.522374 GTCTCAGCAAACAAAGAAACCTATAG 58.478 38.462 0.00 0.00 0.00 1.31
233 234 4.256920 CCCATGATTCAATCCCTATCGTC 58.743 47.826 0.00 0.00 0.00 4.20
260 261 4.954875 AGATCCAGAGTTATAGCACAAGC 58.045 43.478 0.00 0.00 42.56 4.01
262 263 6.070824 TGTGAAGATCCAGAGTTATAGCACAA 60.071 38.462 0.00 0.00 0.00 3.33
263 264 5.422012 TGTGAAGATCCAGAGTTATAGCACA 59.578 40.000 0.00 0.00 0.00 4.57
264 265 5.907207 TGTGAAGATCCAGAGTTATAGCAC 58.093 41.667 0.00 0.00 0.00 4.40
305 306 9.883142 TTGGACAGTAAAAACAAATCAAAGATT 57.117 25.926 0.00 0.00 0.00 2.40
338 339 7.148052 ACAGAGTGGTGCTAACTATTAGTAGTG 60.148 40.741 0.00 0.00 40.24 2.74
339 340 6.890814 ACAGAGTGGTGCTAACTATTAGTAGT 59.109 38.462 0.00 0.00 42.93 2.73
340 341 7.336161 ACAGAGTGGTGCTAACTATTAGTAG 57.664 40.000 0.00 0.00 35.66 2.57
349 350 5.296035 AGTTACAAAACAGAGTGGTGCTAAC 59.704 40.000 0.00 0.00 38.12 2.34
378 382 1.722507 GCAAGTTTCACGCAGCGAC 60.723 57.895 24.65 9.27 0.00 5.19
419 423 5.801350 AATCATCATTCGTATAATGCCCG 57.199 39.130 0.00 0.00 0.00 6.13
420 424 6.324819 CCAAATCATCATTCGTATAATGCCC 58.675 40.000 0.00 0.00 0.00 5.36
453 457 0.517316 AATCGAAGCAAACGAGCCAC 59.483 50.000 0.00 0.00 42.81 5.01
550 554 3.169908 GAAGGAGATAGATGAGGGGTCC 58.830 54.545 0.00 0.00 0.00 4.46
579 583 1.003118 TGTGTGACAAGGACATAGCCC 59.997 52.381 0.00 0.00 0.00 5.19
583 587 5.056480 CAGTTTCTGTGTGACAAGGACATA 58.944 41.667 0.00 0.00 0.00 2.29
720 724 3.613910 GCACGCACCCTTTGTATTCAAAT 60.614 43.478 0.00 0.00 41.77 2.32
732 739 1.764571 TAAGGTCTTGCACGCACCCT 61.765 55.000 4.58 0.00 0.00 4.34
744 753 3.244249 GCAGTTCTGTCTTGGTAAGGTCT 60.244 47.826 1.78 0.00 0.00 3.85
825 834 4.321899 GGGCACATATTTTGCTGAAACAGA 60.322 41.667 2.81 0.00 40.07 3.41
843 852 8.088365 AGTAACTTTCAGATTTAAATTGGGCAC 58.912 33.333 1.43 0.00 0.00 5.01
905 914 6.719829 GGCAATTAATGTAATAACTAGCCCCT 59.280 38.462 0.00 0.00 0.00 4.79
1059 1069 0.179089 CCGAGGACTCTGGCATGAAG 60.179 60.000 0.00 0.00 0.00 3.02
1113 1123 7.364200 CACTTCGGGTGTTGATAAAAACAATA 58.636 34.615 0.00 0.00 41.52 1.90
1140 1150 3.866883 AAATTATGTCCAAGTTGCCCG 57.133 42.857 0.00 0.00 0.00 6.13
1143 1153 7.326063 GTGACAAGTAAATTATGTCCAAGTTGC 59.674 37.037 0.00 0.00 42.12 4.17
1173 1183 1.399440 GCATGATTGAGAAGCTTGCGA 59.601 47.619 2.10 0.00 38.02 5.10
1284 1294 7.414429 GCAATTCAGAAATTTAGAAATTGCCCC 60.414 37.037 26.80 13.21 38.53 5.80
1291 1301 7.725251 ACACCTGCAATTCAGAAATTTAGAAA 58.275 30.769 8.96 0.00 45.72 2.52
1360 1370 1.165270 GCCTTTCCACGTTGCTGTAT 58.835 50.000 0.00 0.00 0.00 2.29
1416 1426 7.014711 CACTCACTATTAGCCTCAATCTCCTAA 59.985 40.741 0.00 0.00 0.00 2.69
1645 1656 2.109128 TGGCAGGTTATTTCCAGTTCCA 59.891 45.455 0.00 0.00 0.00 3.53
1727 1743 4.487019 GCTGCGGTAGTATAAGAAGATCC 58.513 47.826 0.00 0.00 0.00 3.36
1772 1788 5.185249 TCGAGTAAAAGCAGGTCTAACAGAT 59.815 40.000 0.00 0.00 0.00 2.90
1785 1801 4.745649 AGGTCATACTGTCGAGTAAAAGC 58.254 43.478 0.00 0.00 38.21 3.51
1820 1836 9.081997 CGCACTGCAAAAAGGATAAATATTTAA 57.918 29.630 11.80 0.00 0.00 1.52
1821 1837 8.247562 ACGCACTGCAAAAAGGATAAATATTTA 58.752 29.630 10.27 10.27 0.00 1.40
1954 1973 2.489722 GCCCACCAGAAGAAAGATTGTC 59.510 50.000 0.00 0.00 0.00 3.18
2038 2057 9.830975 ACAGCACATCATATAAAGTATTGTACA 57.169 29.630 0.00 0.00 0.00 2.90
2126 2146 7.127955 ACCAACTTTAGGAAGGATATGACAGAT 59.872 37.037 0.00 0.00 37.19 2.90
2257 2277 2.222027 GCCAGCTGAAACAGTGTAGTT 58.778 47.619 17.39 0.00 33.43 2.24
2285 2305 5.184864 ACGTTTTGGGCATTTCATTCTCATA 59.815 36.000 0.00 0.00 0.00 2.15
2447 2467 9.699703 AACACAACAACTAAGTTAACACAAAAT 57.300 25.926 8.61 0.00 0.00 1.82
2521 2541 7.004086 TGAAGGTTATGATGGTGTTCTTTTCT 58.996 34.615 0.00 0.00 0.00 2.52
2527 2547 9.337396 TGTATAATGAAGGTTATGATGGTGTTC 57.663 33.333 0.00 0.00 0.00 3.18
2603 2624 8.431910 ACTTATAAAAGTGAACAGAGGGAGTA 57.568 34.615 0.00 0.00 44.40 2.59
2604 2625 7.317722 ACTTATAAAAGTGAACAGAGGGAGT 57.682 36.000 0.00 0.00 44.40 3.85
2605 2626 6.819146 GGACTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 46.09 4.30
2606 2627 6.500751 AGGACTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 46.09 4.20
2607 2628 6.712276 AGGACTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 46.09 4.30
2608 2629 7.878127 TCAAGGACTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 46.09 3.69
2609 2630 8.833231 TCAAGGACTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 46.09 3.35
2610 2631 9.273016 CTTCAAGGACTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 46.09 3.41
2611 2632 9.273016 TCTTCAAGGACTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 46.09 3.16
2612 2633 9.052759 GTCTTCAAGGACTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 46.09 3.18
2613 2634 9.052759 TGTCTTCAAGGACTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 46.09 3.18
2614 2635 9.793259 ATGTCTTCAAGGACTTATAAAAGTGAA 57.207 29.630 0.00 0.00 46.09 3.18
2615 2636 9.793259 AATGTCTTCAAGGACTTATAAAAGTGA 57.207 29.630 0.00 0.00 46.09 3.41
2621 2642 9.436957 GTCTGAAATGTCTTCAAGGACTTATAA 57.563 33.333 0.00 0.00 37.16 0.98
2622 2643 8.593679 TGTCTGAAATGTCTTCAAGGACTTATA 58.406 33.333 7.80 0.00 37.16 0.98
2623 2644 7.453393 TGTCTGAAATGTCTTCAAGGACTTAT 58.547 34.615 7.80 0.00 37.16 1.73
2624 2645 6.826668 TGTCTGAAATGTCTTCAAGGACTTA 58.173 36.000 7.80 0.00 37.16 2.24
2625 2646 5.684704 TGTCTGAAATGTCTTCAAGGACTT 58.315 37.500 7.80 0.00 37.16 3.01
2626 2647 5.296151 TGTCTGAAATGTCTTCAAGGACT 57.704 39.130 7.80 0.00 37.16 3.85
2627 2648 4.083590 GCTGTCTGAAATGTCTTCAAGGAC 60.084 45.833 0.00 0.00 36.81 3.85
2628 2649 4.067896 GCTGTCTGAAATGTCTTCAAGGA 58.932 43.478 0.00 0.00 0.00 3.36
2629 2650 3.817084 TGCTGTCTGAAATGTCTTCAAGG 59.183 43.478 0.00 0.00 0.00 3.61
2630 2651 5.391449 CATGCTGTCTGAAATGTCTTCAAG 58.609 41.667 0.00 0.00 0.00 3.02
2631 2652 4.320714 GCATGCTGTCTGAAATGTCTTCAA 60.321 41.667 11.37 0.00 0.00 2.69
2632 2653 3.189910 GCATGCTGTCTGAAATGTCTTCA 59.810 43.478 11.37 0.00 0.00 3.02
2633 2654 3.189910 TGCATGCTGTCTGAAATGTCTTC 59.810 43.478 20.33 0.00 0.00 2.87
2634 2655 3.151554 TGCATGCTGTCTGAAATGTCTT 58.848 40.909 20.33 0.00 0.00 3.01
2635 2656 2.786777 TGCATGCTGTCTGAAATGTCT 58.213 42.857 20.33 0.00 0.00 3.41
2636 2657 3.564235 TTGCATGCTGTCTGAAATGTC 57.436 42.857 20.33 0.00 0.00 3.06
2637 2658 3.859627 GCTTTGCATGCTGTCTGAAATGT 60.860 43.478 20.33 0.00 0.00 2.71
2638 2659 2.666508 GCTTTGCATGCTGTCTGAAATG 59.333 45.455 20.33 6.25 0.00 2.32
2639 2660 2.297880 TGCTTTGCATGCTGTCTGAAAT 59.702 40.909 20.33 0.00 31.71 2.17
2640 2661 1.682323 TGCTTTGCATGCTGTCTGAAA 59.318 42.857 20.33 8.76 31.71 2.69
2641 2662 1.268625 CTGCTTTGCATGCTGTCTGAA 59.731 47.619 20.33 0.00 38.13 3.02
2642 2663 0.879090 CTGCTTTGCATGCTGTCTGA 59.121 50.000 20.33 0.00 38.13 3.27
2643 2664 0.732880 GCTGCTTTGCATGCTGTCTG 60.733 55.000 20.33 10.11 38.13 3.51
2644 2665 1.585006 GCTGCTTTGCATGCTGTCT 59.415 52.632 20.33 0.00 38.13 3.41
2645 2666 1.445582 GGCTGCTTTGCATGCTGTC 60.446 57.895 20.33 12.24 38.13 3.51
2646 2667 0.609957 TAGGCTGCTTTGCATGCTGT 60.610 50.000 20.33 4.95 38.13 4.40
2647 2668 0.744874 ATAGGCTGCTTTGCATGCTG 59.255 50.000 20.33 10.18 38.13 4.41
2648 2669 1.481871 AATAGGCTGCTTTGCATGCT 58.518 45.000 20.33 0.00 38.13 3.79
2649 2670 2.304751 AAATAGGCTGCTTTGCATGC 57.695 45.000 11.82 11.82 38.13 4.06
2650 2671 5.413499 ACTAAAAATAGGCTGCTTTGCATG 58.587 37.500 0.00 0.00 38.13 4.06
2651 2672 5.665916 ACTAAAAATAGGCTGCTTTGCAT 57.334 34.783 0.00 0.00 38.13 3.96
2652 2673 5.221422 ACAACTAAAAATAGGCTGCTTTGCA 60.221 36.000 0.00 0.00 36.92 4.08
2653 2674 5.230182 ACAACTAAAAATAGGCTGCTTTGC 58.770 37.500 0.00 0.00 0.00 3.68
2654 2675 6.583806 CAGACAACTAAAAATAGGCTGCTTTG 59.416 38.462 0.00 0.00 0.00 2.77
2655 2676 6.490040 TCAGACAACTAAAAATAGGCTGCTTT 59.510 34.615 0.00 0.00 0.00 3.51
2656 2677 6.003950 TCAGACAACTAAAAATAGGCTGCTT 58.996 36.000 0.00 0.00 0.00 3.91
2657 2678 5.560724 TCAGACAACTAAAAATAGGCTGCT 58.439 37.500 0.00 0.00 0.00 4.24
2658 2679 5.880054 TCAGACAACTAAAAATAGGCTGC 57.120 39.130 0.00 0.00 0.00 5.25
2659 2680 8.514594 TCATTTCAGACAACTAAAAATAGGCTG 58.485 33.333 0.00 0.00 0.00 4.85
2660 2681 8.515414 GTCATTTCAGACAACTAAAAATAGGCT 58.485 33.333 0.00 0.00 38.40 4.58
2661 2682 8.515414 AGTCATTTCAGACAACTAAAAATAGGC 58.485 33.333 0.00 0.00 40.98 3.93
2680 2701 9.014297 CCCTCAGTTCACTTTTATAAGTCATTT 57.986 33.333 0.00 0.00 42.67 2.32
2681 2702 8.383175 TCCCTCAGTTCACTTTTATAAGTCATT 58.617 33.333 0.00 0.00 42.67 2.57
2682 2703 7.918076 TCCCTCAGTTCACTTTTATAAGTCAT 58.082 34.615 0.00 0.00 42.67 3.06
2683 2704 7.016268 ACTCCCTCAGTTCACTTTTATAAGTCA 59.984 37.037 0.00 0.00 35.49 3.41
2684 2705 7.387643 ACTCCCTCAGTTCACTTTTATAAGTC 58.612 38.462 0.00 0.00 35.49 3.01
2685 2706 7.317722 ACTCCCTCAGTTCACTTTTATAAGT 57.682 36.000 0.00 0.00 37.24 2.24
2686 2707 9.535878 GATACTCCCTCAGTTCACTTTTATAAG 57.464 37.037 0.00 0.00 36.43 1.73
2687 2708 9.268282 AGATACTCCCTCAGTTCACTTTTATAA 57.732 33.333 0.00 0.00 36.43 0.98
2688 2709 8.840200 AGATACTCCCTCAGTTCACTTTTATA 57.160 34.615 0.00 0.00 36.43 0.98
2689 2710 7.741554 AGATACTCCCTCAGTTCACTTTTAT 57.258 36.000 0.00 0.00 36.43 1.40
2690 2711 8.529476 GTTAGATACTCCCTCAGTTCACTTTTA 58.471 37.037 0.00 0.00 36.43 1.52
2691 2712 7.016268 TGTTAGATACTCCCTCAGTTCACTTTT 59.984 37.037 0.00 0.00 36.43 2.27
2692 2713 6.497259 TGTTAGATACTCCCTCAGTTCACTTT 59.503 38.462 0.00 0.00 36.43 2.66
2693 2714 6.017192 TGTTAGATACTCCCTCAGTTCACTT 58.983 40.000 0.00 0.00 36.43 3.16
2694 2715 5.580998 TGTTAGATACTCCCTCAGTTCACT 58.419 41.667 0.00 0.00 36.43 3.41
2695 2716 5.916661 TGTTAGATACTCCCTCAGTTCAC 57.083 43.478 0.00 0.00 36.43 3.18
2696 2717 6.724441 TCTTTGTTAGATACTCCCTCAGTTCA 59.276 38.462 0.00 0.00 36.43 3.18
2697 2718 7.171630 TCTTTGTTAGATACTCCCTCAGTTC 57.828 40.000 0.00 0.00 36.43 3.01
2698 2719 7.400339 TCATCTTTGTTAGATACTCCCTCAGTT 59.600 37.037 0.00 0.00 41.78 3.16
2699 2720 6.897966 TCATCTTTGTTAGATACTCCCTCAGT 59.102 38.462 0.00 0.00 41.78 3.41
2700 2721 7.206687 GTCATCTTTGTTAGATACTCCCTCAG 58.793 42.308 0.00 0.00 41.78 3.35
2701 2722 6.098409 GGTCATCTTTGTTAGATACTCCCTCA 59.902 42.308 0.00 0.00 41.78 3.86
2702 2723 6.098409 TGGTCATCTTTGTTAGATACTCCCTC 59.902 42.308 0.00 0.00 41.78 4.30
2703 2724 5.964477 TGGTCATCTTTGTTAGATACTCCCT 59.036 40.000 0.00 0.00 41.78 4.20
2704 2725 6.098409 TCTGGTCATCTTTGTTAGATACTCCC 59.902 42.308 0.00 0.00 41.78 4.30
2705 2726 7.113658 TCTGGTCATCTTTGTTAGATACTCC 57.886 40.000 0.00 0.00 41.78 3.85
2706 2727 6.699642 GCTCTGGTCATCTTTGTTAGATACTC 59.300 42.308 0.00 0.00 41.78 2.59
2707 2728 6.578023 GCTCTGGTCATCTTTGTTAGATACT 58.422 40.000 0.00 0.00 41.78 2.12
2708 2729 5.460419 CGCTCTGGTCATCTTTGTTAGATAC 59.540 44.000 0.00 0.00 41.78 2.24
2745 2766 6.166279 TCAGACCACAAGCAAGAAGTTATAG 58.834 40.000 0.00 0.00 0.00 1.31
2877 2898 3.883489 GGGGAAACATATGGAGCAAGTAC 59.117 47.826 7.80 0.00 0.00 2.73
2887 2908 8.236585 TCAATTTACAGATGGGGAAACATATG 57.763 34.615 0.00 0.00 43.67 1.78
2903 2924 7.961351 AGTTGACATTCCCAATTCAATTTACA 58.039 30.769 0.00 0.00 30.96 2.41
2910 2931 7.669304 TCTTCAATAGTTGACATTCCCAATTCA 59.331 33.333 0.00 0.00 39.87 2.57
3134 3156 7.338800 TGTTCTTCTCTTTCTGCTCAATTTT 57.661 32.000 0.00 0.00 0.00 1.82
3230 3255 1.289276 CGCAAAAAGCAGCCAAAAGT 58.711 45.000 0.00 0.00 46.13 2.66
3256 3281 5.772825 AAAGCAGTTCAACTTGATGCTAA 57.227 34.783 16.68 0.00 40.61 3.09
3541 3570 4.322567 AGAGAGAAACTAAAAGCAGGCAG 58.677 43.478 0.00 0.00 0.00 4.85
3706 3736 8.188139 AGTATTGAGTTTGTGACGAACATTTTT 58.812 29.630 17.31 0.00 38.99 1.94
3768 3798 7.502561 ACCTTGACTATTAGCCAAATGGAATAC 59.497 37.037 2.98 0.00 37.39 1.89
3938 3968 0.106419 ACCGAAAAAGGGGAGCACAA 60.106 50.000 0.00 0.00 35.02 3.33
3945 3975 5.637387 CACAATTTCAATACCGAAAAAGGGG 59.363 40.000 0.00 0.00 38.33 4.79
4021 4051 7.861630 TGTGCTATAACTGAAACTTCAAAGTC 58.138 34.615 0.00 0.00 38.57 3.01
4059 4089 3.801594 CGTTTATGCTGCACCTTGTTTTT 59.198 39.130 3.57 0.00 0.00 1.94
4064 4094 1.131126 CCTCGTTTATGCTGCACCTTG 59.869 52.381 3.57 0.00 0.00 3.61
4114 4144 7.675161 TGATGGTTTAGATCAAGAGTATCCA 57.325 36.000 0.00 0.00 33.66 3.41
4147 4177 4.060900 CAAGTACAGTGTGAGCTGTTGAT 58.939 43.478 5.88 0.00 46.45 2.57
4172 4202 5.910723 GTGTGTGGTTAAGTAAAATGGAACG 59.089 40.000 0.00 0.00 0.00 3.95
4179 4209 5.132480 ACCCTAGGTGTGTGGTTAAGTAAAA 59.868 40.000 8.29 0.00 32.98 1.52
4248 4278 5.853936 AGCTAAATCAAAACCCAGAAAACC 58.146 37.500 0.00 0.00 0.00 3.27
4396 4435 7.864379 CCAGCCTATTAAACTTGATAGCATTTG 59.136 37.037 0.00 0.00 0.00 2.32
4410 4449 6.327386 AGTGAAATCCTCCAGCCTATTAAA 57.673 37.500 0.00 0.00 0.00 1.52
4440 4481 4.327982 AGGATCCAAGTATGATGTGTCG 57.672 45.455 15.82 0.00 0.00 4.35
4499 4540 3.010808 ACAATTATTTTGGGACGGAGGGA 59.989 43.478 0.00 0.00 0.00 4.20
4500 4541 3.361786 ACAATTATTTTGGGACGGAGGG 58.638 45.455 0.00 0.00 0.00 4.30
4501 4542 4.270008 AGACAATTATTTTGGGACGGAGG 58.730 43.478 0.00 0.00 0.00 4.30
4502 4543 5.897377 AAGACAATTATTTTGGGACGGAG 57.103 39.130 0.00 0.00 0.00 4.63
4503 4544 5.648960 GGTAAGACAATTATTTTGGGACGGA 59.351 40.000 0.00 0.00 0.00 4.69
4504 4545 5.650703 AGGTAAGACAATTATTTTGGGACGG 59.349 40.000 0.00 0.00 0.00 4.79
4505 4546 6.753107 AGGTAAGACAATTATTTTGGGACG 57.247 37.500 0.00 0.00 0.00 4.79
4506 4547 8.364894 ACAAAGGTAAGACAATTATTTTGGGAC 58.635 33.333 0.00 0.00 0.00 4.46
4507 4548 8.485578 ACAAAGGTAAGACAATTATTTTGGGA 57.514 30.769 0.00 0.00 0.00 4.37
4508 4549 9.634163 GTACAAAGGTAAGACAATTATTTTGGG 57.366 33.333 0.00 0.00 0.00 4.12
4514 4555 9.819267 GAGCTAGTACAAAGGTAAGACAATTAT 57.181 33.333 0.00 0.00 0.00 1.28
4515 4556 9.032624 AGAGCTAGTACAAAGGTAAGACAATTA 57.967 33.333 0.00 0.00 0.00 1.40
4516 4557 7.908453 AGAGCTAGTACAAAGGTAAGACAATT 58.092 34.615 0.00 0.00 0.00 2.32
4517 4558 7.483580 AGAGCTAGTACAAAGGTAAGACAAT 57.516 36.000 0.00 0.00 0.00 2.71
4518 4559 6.912951 AGAGCTAGTACAAAGGTAAGACAA 57.087 37.500 0.00 0.00 0.00 3.18
4519 4560 7.173722 ACTAGAGCTAGTACAAAGGTAAGACA 58.826 38.462 8.35 0.00 43.98 3.41
4520 4561 7.628769 ACTAGAGCTAGTACAAAGGTAAGAC 57.371 40.000 8.35 0.00 43.98 3.01
4536 4577 9.411189 AGCTTAGTATAACTTTGTACTAGAGCT 57.589 33.333 20.96 20.96 40.86 4.09
4537 4578 9.667989 GAGCTTAGTATAACTTTGTACTAGAGC 57.332 37.037 18.91 18.91 38.19 4.09
4538 4579 9.866936 CGAGCTTAGTATAACTTTGTACTAGAG 57.133 37.037 0.00 7.61 38.19 2.43
4539 4580 9.605275 TCGAGCTTAGTATAACTTTGTACTAGA 57.395 33.333 0.00 0.00 38.19 2.43
4540 4581 9.866936 CTCGAGCTTAGTATAACTTTGTACTAG 57.133 37.037 0.00 0.00 38.19 2.57
4541 4582 9.605275 TCTCGAGCTTAGTATAACTTTGTACTA 57.395 33.333 7.81 2.43 36.63 1.82
4542 4583 8.397148 GTCTCGAGCTTAGTATAACTTTGTACT 58.603 37.037 7.81 4.13 38.43 2.73
4543 4584 8.180267 TGTCTCGAGCTTAGTATAACTTTGTAC 58.820 37.037 7.81 0.00 0.00 2.90
4544 4585 8.180267 GTGTCTCGAGCTTAGTATAACTTTGTA 58.820 37.037 7.81 0.00 0.00 2.41
4545 4586 7.028361 GTGTCTCGAGCTTAGTATAACTTTGT 58.972 38.462 7.81 0.00 0.00 2.83
4546 4587 7.251994 AGTGTCTCGAGCTTAGTATAACTTTG 58.748 38.462 7.81 0.00 0.00 2.77
4547 4588 7.393841 AGTGTCTCGAGCTTAGTATAACTTT 57.606 36.000 7.81 0.00 0.00 2.66
4548 4589 7.393841 AAGTGTCTCGAGCTTAGTATAACTT 57.606 36.000 7.81 3.83 0.00 2.66
4549 4590 8.680039 ATAAGTGTCTCGAGCTTAGTATAACT 57.320 34.615 7.81 0.00 0.00 2.24
4550 4591 9.733219 AAATAAGTGTCTCGAGCTTAGTATAAC 57.267 33.333 7.81 0.00 0.00 1.89
4552 4593 9.731819 CAAAATAAGTGTCTCGAGCTTAGTATA 57.268 33.333 7.81 0.00 0.00 1.47
4553 4594 7.707035 CCAAAATAAGTGTCTCGAGCTTAGTAT 59.293 37.037 7.81 0.00 0.00 2.12
4554 4595 7.033791 CCAAAATAAGTGTCTCGAGCTTAGTA 58.966 38.462 7.81 0.00 0.00 1.82
4555 4596 5.869888 CCAAAATAAGTGTCTCGAGCTTAGT 59.130 40.000 7.81 6.50 0.00 2.24
4556 4597 5.292101 CCCAAAATAAGTGTCTCGAGCTTAG 59.708 44.000 7.81 0.00 0.00 2.18
4557 4598 5.046878 TCCCAAAATAAGTGTCTCGAGCTTA 60.047 40.000 7.81 10.29 0.00 3.09
4558 4599 4.003648 CCCAAAATAAGTGTCTCGAGCTT 58.996 43.478 7.81 8.26 0.00 3.74
4559 4600 3.260884 TCCCAAAATAAGTGTCTCGAGCT 59.739 43.478 7.81 0.00 0.00 4.09
4560 4601 3.371285 GTCCCAAAATAAGTGTCTCGAGC 59.629 47.826 7.81 3.58 0.00 5.03
4561 4602 3.612860 CGTCCCAAAATAAGTGTCTCGAG 59.387 47.826 5.93 5.93 0.00 4.04
4562 4603 3.581755 CGTCCCAAAATAAGTGTCTCGA 58.418 45.455 0.00 0.00 0.00 4.04
4563 4604 2.671396 CCGTCCCAAAATAAGTGTCTCG 59.329 50.000 0.00 0.00 0.00 4.04
4564 4605 3.934068 TCCGTCCCAAAATAAGTGTCTC 58.066 45.455 0.00 0.00 0.00 3.36
4565 4606 4.324267 CTTCCGTCCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
4566 4607 3.439129 CCTTCCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
4567 4608 3.073356 TCCTTCCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
4568 4609 3.681593 TCCTTCCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
4569 4610 3.329814 ACTCCTTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
4570 4611 3.951663 ACTCCTTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
4571 4612 4.533311 AGTACTCCTTCCGTCCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
4572 4613 4.098894 AGTACTCCTTCCGTCCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
4573 4614 2.910977 AGTACTCCTTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
4574 4615 2.332117 AGTACTCCTTCCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
4575 4616 2.019807 AGTACTCCTTCCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4576 4617 2.450476 GTAGTACTCCTTCCGTCCCAA 58.550 52.381 0.00 0.00 0.00 4.12
4577 4618 1.679944 CGTAGTACTCCTTCCGTCCCA 60.680 57.143 0.00 0.00 0.00 4.37
4578 4619 1.020437 CGTAGTACTCCTTCCGTCCC 58.980 60.000 0.00 0.00 0.00 4.46
4579 4620 1.743996 ACGTAGTACTCCTTCCGTCC 58.256 55.000 0.00 0.00 41.94 4.79
4580 4621 3.438434 AGAAACGTAGTACTCCTTCCGTC 59.562 47.826 0.00 0.00 45.00 4.79
4581 4622 3.190118 CAGAAACGTAGTACTCCTTCCGT 59.810 47.826 0.00 0.00 45.00 4.69
4582 4623 3.438087 TCAGAAACGTAGTACTCCTTCCG 59.562 47.826 0.00 0.00 45.00 4.30
4583 4624 5.382618 TTCAGAAACGTAGTACTCCTTCC 57.617 43.478 0.00 0.00 45.00 3.46
4584 4625 7.760437 AGTATTCAGAAACGTAGTACTCCTTC 58.240 38.462 0.00 0.00 45.00 3.46
4585 4626 7.413877 CGAGTATTCAGAAACGTAGTACTCCTT 60.414 40.741 0.00 0.00 45.00 3.36
4586 4627 6.036953 CGAGTATTCAGAAACGTAGTACTCCT 59.963 42.308 0.00 0.00 45.00 3.69
4587 4628 6.190962 CGAGTATTCAGAAACGTAGTACTCC 58.809 44.000 0.00 0.00 45.00 3.85
4588 4629 5.676310 GCGAGTATTCAGAAACGTAGTACTC 59.324 44.000 0.00 7.52 45.00 2.59
4589 4630 5.448360 GGCGAGTATTCAGAAACGTAGTACT 60.448 44.000 0.00 0.00 45.00 2.73
4590 4631 4.732442 GGCGAGTATTCAGAAACGTAGTAC 59.268 45.833 0.00 0.00 45.00 2.73
4591 4632 4.637534 AGGCGAGTATTCAGAAACGTAGTA 59.362 41.667 0.00 0.00 45.00 1.82
4593 4634 3.791887 CAGGCGAGTATTCAGAAACGTAG 59.208 47.826 0.00 0.00 0.00 3.51
4594 4635 3.428452 CCAGGCGAGTATTCAGAAACGTA 60.428 47.826 0.00 0.00 0.00 3.57
4603 4644 3.500680 TGTTCAAAACCAGGCGAGTATTC 59.499 43.478 0.00 0.00 0.00 1.75
4763 5023 6.088085 GCATGATCTTTCAAGTTAAACGTTGG 59.912 38.462 0.00 0.00 34.96 3.77
4785 5045 2.129607 CGCTGCTTTTGACTTTTGCAT 58.870 42.857 0.00 0.00 33.02 3.96
4821 5081 4.259970 CGTTAAGAGCAATCAACTCATCCG 60.260 45.833 0.00 0.00 36.58 4.18
4884 5144 2.910688 ACCTGTTCAGAACATCACGT 57.089 45.000 16.53 7.82 41.26 4.49
4888 5148 6.446318 TGCATAAAAACCTGTTCAGAACATC 58.554 36.000 16.53 0.00 41.26 3.06
4924 5184 4.647564 AATTGAGACAGACAATGGACCT 57.352 40.909 0.00 0.00 37.89 3.85
5027 5287 9.764363 TTGTTGCTATACTAGGAATGATGTTAG 57.236 33.333 0.00 0.00 38.40 2.34
5253 5513 9.364989 GGTATATAACACACAACCTACGTTTTA 57.635 33.333 0.00 0.00 0.00 1.52
5258 5518 6.798482 TGAGGTATATAACACACAACCTACG 58.202 40.000 0.00 0.00 37.47 3.51
5259 5519 7.779073 ACTGAGGTATATAACACACAACCTAC 58.221 38.462 0.00 0.00 37.47 3.18
5260 5520 7.069085 GGACTGAGGTATATAACACACAACCTA 59.931 40.741 0.00 0.00 37.47 3.08
5262 5522 6.047231 GGACTGAGGTATATAACACACAACC 58.953 44.000 0.00 0.00 0.00 3.77
5263 5523 6.875076 AGGACTGAGGTATATAACACACAAC 58.125 40.000 0.00 0.00 0.00 3.32
5264 5524 8.598202 TTAGGACTGAGGTATATAACACACAA 57.402 34.615 0.00 0.00 0.00 3.33
5282 5542 7.862675 AGTCCATAGCTTTACATTTTAGGACT 58.137 34.615 0.00 0.00 45.18 3.85
5554 5814 2.852449 AGGGGAGTCATTGATGCCTTTA 59.148 45.455 7.44 0.00 0.00 1.85
5566 5826 0.548926 TTGCCATACCAGGGGAGTCA 60.549 55.000 0.00 0.00 0.00 3.41
5718 5981 2.303175 GACAAACTGTACAGGCCCAAA 58.697 47.619 26.12 0.00 0.00 3.28
5719 5982 1.477923 GGACAAACTGTACAGGCCCAA 60.478 52.381 26.12 0.00 29.61 4.12
5872 6140 5.420725 TGGTTAGTGCTTATGATGACTGT 57.579 39.130 0.00 0.00 0.00 3.55
5894 6162 0.698818 AGGAGCGGAGAAATTGGGTT 59.301 50.000 0.00 0.00 0.00 4.11
6008 6277 3.955771 TCAAACTTGTTGTCTTACGGC 57.044 42.857 0.00 0.00 0.00 5.68
6010 6279 7.010023 GCTTAGATCAAACTTGTTGTCTTACG 58.990 38.462 0.00 0.00 0.00 3.18
6016 6285 6.942532 TCTTGCTTAGATCAAACTTGTTGT 57.057 33.333 0.00 0.00 0.00 3.32
6031 6300 8.046708 TCTCCTGCAGTTTTATTATCTTGCTTA 58.953 33.333 13.81 0.00 0.00 3.09
6032 6301 6.886459 TCTCCTGCAGTTTTATTATCTTGCTT 59.114 34.615 13.81 0.00 0.00 3.91
6033 6302 6.418101 TCTCCTGCAGTTTTATTATCTTGCT 58.582 36.000 13.81 0.00 0.00 3.91
6041 6325 3.950395 GAGCCATCTCCTGCAGTTTTATT 59.050 43.478 13.81 0.00 33.19 1.40
6097 6412 9.297037 GCCATGTAGGTAAATATTGTAGGATTT 57.703 33.333 0.00 0.00 40.61 2.17
6143 6459 5.615764 GCTTTGTGTTTTCTCTCTTCGGATC 60.616 44.000 0.00 0.00 0.00 3.36
6212 6528 7.979444 TTCCTATGGACTGTTCTTTTTACAG 57.021 36.000 0.00 0.00 46.56 2.74
6259 6575 3.912248 TCTCTATGGAGGGTCCTTGTAC 58.088 50.000 6.21 0.00 39.86 2.90
6260 6576 4.620086 TTCTCTATGGAGGGTCCTTGTA 57.380 45.455 6.21 0.00 39.86 2.41
6261 6577 3.491766 TTCTCTATGGAGGGTCCTTGT 57.508 47.619 6.21 0.00 39.86 3.16
6262 6578 4.844349 TTTTCTCTATGGAGGGTCCTTG 57.156 45.455 6.21 0.00 39.86 3.61
6263 6579 7.085601 AGATATTTTCTCTATGGAGGGTCCTT 58.914 38.462 6.21 0.00 39.86 3.36
6264 6580 6.638953 AGATATTTTCTCTATGGAGGGTCCT 58.361 40.000 6.21 0.00 39.86 3.85
6265 6581 6.943899 AGATATTTTCTCTATGGAGGGTCC 57.056 41.667 6.21 0.00 39.86 4.46
6266 6582 8.201242 AGAAGATATTTTCTCTATGGAGGGTC 57.799 38.462 6.21 0.00 39.86 4.46
6267 6583 8.574309 AAGAAGATATTTTCTCTATGGAGGGT 57.426 34.615 8.83 0.00 39.86 4.34
6307 6640 6.655003 TGGATTCAAGACATTTACAGAGTTCC 59.345 38.462 0.00 0.00 0.00 3.62
6311 6644 8.327941 TCTTTGGATTCAAGACATTTACAGAG 57.672 34.615 0.00 0.00 33.98 3.35
6320 6653 3.760151 CAGGCATCTTTGGATTCAAGACA 59.240 43.478 0.00 0.00 33.98 3.41
6396 6737 2.232941 CAGAGCTGGGCAATGACAAAAT 59.767 45.455 0.00 0.00 0.00 1.82
6499 6841 5.509498 AGCAAGCTGGTAATAGGAAATCAA 58.491 37.500 0.00 0.00 0.00 2.57
6526 6868 7.931407 ACCATTTAAATGAAGGAAAAACAGGAC 59.069 33.333 26.32 0.00 38.70 3.85
6557 6899 6.551601 TGGGCTCTGTTTTAAAATTAGTTCCA 59.448 34.615 3.52 11.21 0.00 3.53
6579 6921 5.371526 AGCATCATATGTAAGTTCACTGGG 58.628 41.667 1.90 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.