Multiple sequence alignment - TraesCS3B01G351000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G351000 chr3B 100.000 4010 0 0 1 4010 561092445 561096454 0.000000e+00 7406
1 TraesCS3B01G351000 chr3B 91.406 128 11 0 561 688 703031378 703031251 4.120000e-40 176
2 TraesCS3B01G351000 chr3A 96.467 2661 71 9 689 3329 556671543 556668886 0.000000e+00 4372
3 TraesCS3B01G351000 chr3A 95.930 688 19 4 3328 4010 556668806 556668123 0.000000e+00 1107
4 TraesCS3B01G351000 chr3A 92.800 125 9 0 561 685 98823358 98823482 8.850000e-42 182
5 TraesCS3B01G351000 chr3D 97.168 2366 60 5 1088 3451 429095150 429097510 0.000000e+00 3991
6 TraesCS3B01G351000 chr3D 95.944 567 13 4 3449 4010 429097591 429098152 0.000000e+00 911
7 TraesCS3B01G351000 chr3D 88.055 293 5 5 809 1082 429094580 429094861 1.800000e-83 320
8 TraesCS3B01G351000 chr3D 92.623 122 6 1 689 810 429093066 429093184 5.330000e-39 172
9 TraesCS3B01G351000 chr5D 89.876 563 54 3 2 562 478721016 478721577 0.000000e+00 721
10 TraesCS3B01G351000 chr5D 92.126 127 8 2 561 687 312448771 312448647 1.150000e-40 178
11 TraesCS3B01G351000 chr4D 89.343 563 57 3 2 562 476301313 476301874 0.000000e+00 704
12 TraesCS3B01G351000 chr7B 86.570 551 74 0 2 552 724167566 724168116 3.430000e-170 608
13 TraesCS3B01G351000 chr6D 87.914 513 62 0 2 514 29394530 29394018 4.430000e-169 604
14 TraesCS3B01G351000 chr7A 85.273 550 81 0 2 551 134508429 134508978 5.820000e-158 568
15 TraesCS3B01G351000 chr4B 84.898 490 70 4 56 542 149787657 149788145 3.600000e-135 492
16 TraesCS3B01G351000 chr4A 81.835 545 95 4 1 542 646814491 646815034 4.720000e-124 455
17 TraesCS3B01G351000 chr4A 93.750 128 8 0 561 688 712655594 712655721 4.090000e-45 193
18 TraesCS3B01G351000 chr5B 82.163 527 92 2 2 527 469805849 469805324 6.110000e-123 451
19 TraesCS3B01G351000 chr5B 80.882 544 101 3 2 542 467802726 467803269 3.700000e-115 425
20 TraesCS3B01G351000 chr5B 92.308 130 10 0 561 690 679307527 679307398 6.840000e-43 185
21 TraesCS3B01G351000 chr1B 96.094 128 5 0 561 688 319975208 319975335 4.060000e-50 209
22 TraesCS3B01G351000 chr7D 95.935 123 5 0 561 683 523272699 523272577 2.440000e-47 200
23 TraesCS3B01G351000 chr6B 94.531 128 7 0 561 688 414357926 414358053 8.790000e-47 198
24 TraesCS3B01G351000 chr5A 94.531 128 6 1 561 687 502048023 502048150 3.160000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G351000 chr3B 561092445 561096454 4009 False 7406.0 7406 100.0000 1 4010 1 chr3B.!!$F1 4009
1 TraesCS3B01G351000 chr3A 556668123 556671543 3420 True 2739.5 4372 96.1985 689 4010 2 chr3A.!!$R1 3321
2 TraesCS3B01G351000 chr3D 429093066 429098152 5086 False 1348.5 3991 93.4475 689 4010 4 chr3D.!!$F1 3321
3 TraesCS3B01G351000 chr5D 478721016 478721577 561 False 721.0 721 89.8760 2 562 1 chr5D.!!$F1 560
4 TraesCS3B01G351000 chr4D 476301313 476301874 561 False 704.0 704 89.3430 2 562 1 chr4D.!!$F1 560
5 TraesCS3B01G351000 chr7B 724167566 724168116 550 False 608.0 608 86.5700 2 552 1 chr7B.!!$F1 550
6 TraesCS3B01G351000 chr6D 29394018 29394530 512 True 604.0 604 87.9140 2 514 1 chr6D.!!$R1 512
7 TraesCS3B01G351000 chr7A 134508429 134508978 549 False 568.0 568 85.2730 2 551 1 chr7A.!!$F1 549
8 TraesCS3B01G351000 chr4A 646814491 646815034 543 False 455.0 455 81.8350 1 542 1 chr4A.!!$F1 541
9 TraesCS3B01G351000 chr5B 469805324 469805849 525 True 451.0 451 82.1630 2 527 1 chr5B.!!$R1 525
10 TraesCS3B01G351000 chr5B 467802726 467803269 543 False 425.0 425 80.8820 2 542 1 chr5B.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 565 0.034380 GAAACCCTACTGGCCCCTTC 60.034 60.0 0.00 0.0 37.83 3.46 F
634 638 0.035458 CCCATGTCTAATCTCGGCCC 59.965 60.0 0.00 0.0 0.00 5.80 F
765 769 0.038618 TGAGTCATCACCAACGACCG 60.039 55.0 0.00 0.0 0.00 4.79 F
817 2221 0.667487 CGTGAGCATGAGTCAACGGT 60.667 55.0 0.00 0.0 0.00 4.83 F
819 2223 0.678950 TGAGCATGAGTCAACGGTGA 59.321 50.0 0.00 0.0 0.00 4.02 F
2124 3845 0.820891 ATGCCAAGGAGCTATTGCCG 60.821 55.0 5.76 0.0 40.80 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 3599 1.004230 CCTCTCCACCATACCCCCA 59.996 63.158 0.0 0.0 0.00 4.96 R
2124 3845 4.383226 GGACAGTTCTTTAGGACCATCTCC 60.383 50.000 0.0 0.0 39.81 3.71 R
2135 3856 4.508405 CCTCATTTGGGGGACAGTTCTTTA 60.508 45.833 0.0 0.0 0.00 1.85 R
2926 4647 3.118261 ACATATCGTGCCTCCTTCAACAT 60.118 43.478 0.0 0.0 0.00 2.71 R
2964 4685 2.831685 TGCTTAGAACTCCTTTCGCA 57.168 45.000 0.0 0.0 39.47 5.10 R
3276 4998 0.674581 CTCTGTTCTGCAATCCCGCA 60.675 55.000 0.0 0.0 40.32 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.260380 AGATGAACTCTCCCACAGTTGAG 59.740 47.826 0.00 0.00 34.10 3.02
132 133 7.934855 ATCAATCTTGTTGAGCTCAATAGTT 57.065 32.000 30.65 21.00 38.24 2.24
187 188 0.537371 CACCGCTTTCCCCTTGAAGT 60.537 55.000 0.00 0.00 33.63 3.01
269 270 2.093447 AGAGGTTATCTTCAAGTGGCCG 60.093 50.000 0.00 0.00 32.99 6.13
270 271 1.628846 AGGTTATCTTCAAGTGGCCGT 59.371 47.619 0.00 0.00 0.00 5.68
280 281 0.981183 AAGTGGCCGTATCTTCACCA 59.019 50.000 0.00 0.00 0.00 4.17
285 286 1.653151 GCCGTATCTTCACCACCTTC 58.347 55.000 0.00 0.00 0.00 3.46
299 300 0.112412 ACCTTCGCCAAATCCCAAGT 59.888 50.000 0.00 0.00 0.00 3.16
443 444 4.635473 AGATCATCCTCCTTCAACCCTAA 58.365 43.478 0.00 0.00 0.00 2.69
464 465 2.488204 TCGTCCATCATTGCTTCCAA 57.512 45.000 0.00 0.00 35.01 3.53
465 466 2.358957 TCGTCCATCATTGCTTCCAAG 58.641 47.619 0.00 0.00 33.80 3.61
494 495 2.127869 CGCTCCCCGATCCTGAAGA 61.128 63.158 0.00 0.00 40.02 2.87
555 559 3.754766 CGGTAGAAACCCTACTGGC 57.245 57.895 0.00 0.00 46.32 4.85
558 562 0.545171 GTAGAAACCCTACTGGCCCC 59.455 60.000 0.00 0.00 43.42 5.80
560 564 0.477795 AGAAACCCTACTGGCCCCTT 60.478 55.000 0.00 0.00 37.83 3.95
561 565 0.034380 GAAACCCTACTGGCCCCTTC 60.034 60.000 0.00 0.00 37.83 3.46
562 566 0.774491 AAACCCTACTGGCCCCTTCA 60.774 55.000 0.00 0.00 37.83 3.02
563 567 1.498176 AACCCTACTGGCCCCTTCAC 61.498 60.000 0.00 0.00 37.83 3.18
564 568 1.923395 CCCTACTGGCCCCTTCACA 60.923 63.158 0.00 0.00 0.00 3.58
565 569 1.299976 CCTACTGGCCCCTTCACAC 59.700 63.158 0.00 0.00 0.00 3.82
566 570 1.488705 CCTACTGGCCCCTTCACACA 61.489 60.000 0.00 0.00 0.00 3.72
567 571 0.620556 CTACTGGCCCCTTCACACAT 59.379 55.000 0.00 0.00 0.00 3.21
568 572 1.837439 CTACTGGCCCCTTCACACATA 59.163 52.381 0.00 0.00 0.00 2.29
569 573 1.072266 ACTGGCCCCTTCACACATAA 58.928 50.000 0.00 0.00 0.00 1.90
570 574 1.271926 ACTGGCCCCTTCACACATAAC 60.272 52.381 0.00 0.00 0.00 1.89
571 575 1.004745 CTGGCCCCTTCACACATAACT 59.995 52.381 0.00 0.00 0.00 2.24
572 576 1.004277 TGGCCCCTTCACACATAACTC 59.996 52.381 0.00 0.00 0.00 3.01
573 577 1.682087 GGCCCCTTCACACATAACTCC 60.682 57.143 0.00 0.00 0.00 3.85
574 578 1.282157 GCCCCTTCACACATAACTCCT 59.718 52.381 0.00 0.00 0.00 3.69
575 579 2.504175 GCCCCTTCACACATAACTCCTA 59.496 50.000 0.00 0.00 0.00 2.94
576 580 3.136626 GCCCCTTCACACATAACTCCTAT 59.863 47.826 0.00 0.00 0.00 2.57
577 581 4.743955 GCCCCTTCACACATAACTCCTATC 60.744 50.000 0.00 0.00 0.00 2.08
578 582 4.408921 CCCCTTCACACATAACTCCTATCA 59.591 45.833 0.00 0.00 0.00 2.15
579 583 5.360591 CCCTTCACACATAACTCCTATCAC 58.639 45.833 0.00 0.00 0.00 3.06
580 584 5.043903 CCTTCACACATAACTCCTATCACG 58.956 45.833 0.00 0.00 0.00 4.35
581 585 4.041740 TCACACATAACTCCTATCACGC 57.958 45.455 0.00 0.00 0.00 5.34
582 586 3.445805 TCACACATAACTCCTATCACGCA 59.554 43.478 0.00 0.00 0.00 5.24
583 587 3.551890 CACACATAACTCCTATCACGCAC 59.448 47.826 0.00 0.00 0.00 5.34
584 588 3.123804 CACATAACTCCTATCACGCACC 58.876 50.000 0.00 0.00 0.00 5.01
585 589 2.764010 ACATAACTCCTATCACGCACCA 59.236 45.455 0.00 0.00 0.00 4.17
586 590 3.196901 ACATAACTCCTATCACGCACCAA 59.803 43.478 0.00 0.00 0.00 3.67
587 591 2.851263 AACTCCTATCACGCACCAAA 57.149 45.000 0.00 0.00 0.00 3.28
588 592 2.094762 ACTCCTATCACGCACCAAAC 57.905 50.000 0.00 0.00 0.00 2.93
589 593 1.346395 ACTCCTATCACGCACCAAACA 59.654 47.619 0.00 0.00 0.00 2.83
590 594 2.002586 CTCCTATCACGCACCAAACAG 58.997 52.381 0.00 0.00 0.00 3.16
591 595 1.621317 TCCTATCACGCACCAAACAGA 59.379 47.619 0.00 0.00 0.00 3.41
592 596 2.002586 CCTATCACGCACCAAACAGAG 58.997 52.381 0.00 0.00 0.00 3.35
593 597 2.002586 CTATCACGCACCAAACAGAGG 58.997 52.381 0.00 0.00 0.00 3.69
594 598 0.396435 ATCACGCACCAAACAGAGGA 59.604 50.000 0.00 0.00 0.00 3.71
595 599 0.396435 TCACGCACCAAACAGAGGAT 59.604 50.000 0.00 0.00 0.00 3.24
596 600 1.202758 TCACGCACCAAACAGAGGATT 60.203 47.619 0.00 0.00 0.00 3.01
597 601 1.069022 CACGCACCAAACAGAGGATTG 60.069 52.381 0.00 0.00 0.00 2.67
606 610 6.603940 CCAAACAGAGGATTGGGAATAAAA 57.396 37.500 0.00 0.00 41.78 1.52
607 611 7.186570 CCAAACAGAGGATTGGGAATAAAAT 57.813 36.000 0.00 0.00 41.78 1.82
608 612 7.043565 CCAAACAGAGGATTGGGAATAAAATG 58.956 38.462 0.00 0.00 41.78 2.32
609 613 7.093377 CCAAACAGAGGATTGGGAATAAAATGA 60.093 37.037 0.00 0.00 41.78 2.57
610 614 7.410120 AACAGAGGATTGGGAATAAAATGAC 57.590 36.000 0.00 0.00 0.00 3.06
611 615 6.735556 ACAGAGGATTGGGAATAAAATGACT 58.264 36.000 0.00 0.00 0.00 3.41
612 616 7.184862 ACAGAGGATTGGGAATAAAATGACTT 58.815 34.615 0.00 0.00 0.00 3.01
613 617 8.336235 ACAGAGGATTGGGAATAAAATGACTTA 58.664 33.333 0.00 0.00 0.00 2.24
614 618 9.359653 CAGAGGATTGGGAATAAAATGACTTAT 57.640 33.333 0.00 0.00 0.00 1.73
615 619 9.579932 AGAGGATTGGGAATAAAATGACTTATC 57.420 33.333 0.00 0.00 0.00 1.75
616 620 8.712228 AGGATTGGGAATAAAATGACTTATCC 57.288 34.615 0.00 0.00 0.00 2.59
617 621 7.730332 AGGATTGGGAATAAAATGACTTATCCC 59.270 37.037 0.00 0.00 33.55 3.85
618 622 7.508977 GGATTGGGAATAAAATGACTTATCCCA 59.491 37.037 6.54 6.54 37.12 4.37
619 623 9.093458 GATTGGGAATAAAATGACTTATCCCAT 57.907 33.333 11.15 2.76 37.84 4.00
620 624 7.838079 TGGGAATAAAATGACTTATCCCATG 57.162 36.000 6.54 0.00 35.70 3.66
621 625 7.361438 TGGGAATAAAATGACTTATCCCATGT 58.639 34.615 6.54 0.00 35.70 3.21
622 626 7.505585 TGGGAATAAAATGACTTATCCCATGTC 59.494 37.037 6.54 0.00 35.70 3.06
623 627 7.725844 GGGAATAAAATGACTTATCCCATGTCT 59.274 37.037 3.12 0.00 33.37 3.41
624 628 9.793259 GGAATAAAATGACTTATCCCATGTCTA 57.207 33.333 0.00 0.00 33.50 2.59
629 633 9.566432 AAAATGACTTATCCCATGTCTAATCTC 57.434 33.333 0.00 0.00 33.50 2.75
630 634 6.332735 TGACTTATCCCATGTCTAATCTCG 57.667 41.667 0.00 0.00 33.50 4.04
631 635 5.243954 TGACTTATCCCATGTCTAATCTCGG 59.756 44.000 0.00 0.00 33.50 4.63
632 636 4.021016 ACTTATCCCATGTCTAATCTCGGC 60.021 45.833 0.00 0.00 0.00 5.54
633 637 1.048601 TCCCATGTCTAATCTCGGCC 58.951 55.000 0.00 0.00 0.00 6.13
634 638 0.035458 CCCATGTCTAATCTCGGCCC 59.965 60.000 0.00 0.00 0.00 5.80
635 639 0.758734 CCATGTCTAATCTCGGCCCA 59.241 55.000 0.00 0.00 0.00 5.36
636 640 1.140852 CCATGTCTAATCTCGGCCCAA 59.859 52.381 0.00 0.00 0.00 4.12
637 641 2.213499 CATGTCTAATCTCGGCCCAAC 58.787 52.381 0.00 0.00 0.00 3.77
638 642 1.568504 TGTCTAATCTCGGCCCAACT 58.431 50.000 0.00 0.00 0.00 3.16
639 643 1.480954 TGTCTAATCTCGGCCCAACTC 59.519 52.381 0.00 0.00 0.00 3.01
640 644 1.120530 TCTAATCTCGGCCCAACTCC 58.879 55.000 0.00 0.00 0.00 3.85
641 645 0.106894 CTAATCTCGGCCCAACTCCC 59.893 60.000 0.00 0.00 0.00 4.30
642 646 0.326238 TAATCTCGGCCCAACTCCCT 60.326 55.000 0.00 0.00 0.00 4.20
643 647 1.915078 AATCTCGGCCCAACTCCCTG 61.915 60.000 0.00 0.00 0.00 4.45
644 648 4.785453 CTCGGCCCAACTCCCTGC 62.785 72.222 0.00 0.00 0.00 4.85
646 650 4.785453 CGGCCCAACTCCCTGCTC 62.785 72.222 0.00 0.00 0.00 4.26
647 651 3.334054 GGCCCAACTCCCTGCTCT 61.334 66.667 0.00 0.00 0.00 4.09
648 652 1.995626 GGCCCAACTCCCTGCTCTA 60.996 63.158 0.00 0.00 0.00 2.43
649 653 1.562672 GGCCCAACTCCCTGCTCTAA 61.563 60.000 0.00 0.00 0.00 2.10
650 654 0.328258 GCCCAACTCCCTGCTCTAAA 59.672 55.000 0.00 0.00 0.00 1.85
651 655 1.950954 GCCCAACTCCCTGCTCTAAAC 60.951 57.143 0.00 0.00 0.00 2.01
652 656 1.630878 CCCAACTCCCTGCTCTAAACT 59.369 52.381 0.00 0.00 0.00 2.66
653 657 2.355209 CCCAACTCCCTGCTCTAAACTC 60.355 54.545 0.00 0.00 0.00 3.01
654 658 2.355209 CCAACTCCCTGCTCTAAACTCC 60.355 54.545 0.00 0.00 0.00 3.85
655 659 1.574263 ACTCCCTGCTCTAAACTCCC 58.426 55.000 0.00 0.00 0.00 4.30
656 660 1.203313 ACTCCCTGCTCTAAACTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
657 661 2.122768 CTCCCTGCTCTAAACTCCCAT 58.877 52.381 0.00 0.00 0.00 4.00
658 662 2.507471 CTCCCTGCTCTAAACTCCCATT 59.493 50.000 0.00 0.00 0.00 3.16
659 663 2.505819 TCCCTGCTCTAAACTCCCATTC 59.494 50.000 0.00 0.00 0.00 2.67
660 664 2.422093 CCCTGCTCTAAACTCCCATTCC 60.422 54.545 0.00 0.00 0.00 3.01
661 665 2.422093 CCTGCTCTAAACTCCCATTCCC 60.422 54.545 0.00 0.00 0.00 3.97
662 666 1.564348 TGCTCTAAACTCCCATTCCCC 59.436 52.381 0.00 0.00 0.00 4.81
663 667 1.847088 GCTCTAAACTCCCATTCCCCT 59.153 52.381 0.00 0.00 0.00 4.79
664 668 2.242452 GCTCTAAACTCCCATTCCCCTT 59.758 50.000 0.00 0.00 0.00 3.95
665 669 3.685835 GCTCTAAACTCCCATTCCCCTTC 60.686 52.174 0.00 0.00 0.00 3.46
666 670 2.850568 TCTAAACTCCCATTCCCCTTCC 59.149 50.000 0.00 0.00 0.00 3.46
667 671 0.710588 AAACTCCCATTCCCCTTCCC 59.289 55.000 0.00 0.00 0.00 3.97
668 672 0.479589 AACTCCCATTCCCCTTCCCA 60.480 55.000 0.00 0.00 0.00 4.37
669 673 0.479589 ACTCCCATTCCCCTTCCCAA 60.480 55.000 0.00 0.00 0.00 4.12
670 674 0.709992 CTCCCATTCCCCTTCCCAAA 59.290 55.000 0.00 0.00 0.00 3.28
671 675 0.411848 TCCCATTCCCCTTCCCAAAC 59.588 55.000 0.00 0.00 0.00 2.93
672 676 0.116143 CCCATTCCCCTTCCCAAACA 59.884 55.000 0.00 0.00 0.00 2.83
673 677 1.273781 CCCATTCCCCTTCCCAAACAT 60.274 52.381 0.00 0.00 0.00 2.71
674 678 2.550175 CCATTCCCCTTCCCAAACATT 58.450 47.619 0.00 0.00 0.00 2.71
675 679 2.236893 CCATTCCCCTTCCCAAACATTG 59.763 50.000 0.00 0.00 0.00 2.82
676 680 1.347062 TTCCCCTTCCCAAACATTGC 58.653 50.000 0.00 0.00 0.00 3.56
677 681 0.544120 TCCCCTTCCCAAACATTGCC 60.544 55.000 0.00 0.00 0.00 4.52
678 682 0.835543 CCCCTTCCCAAACATTGCCA 60.836 55.000 0.00 0.00 0.00 4.92
679 683 1.055040 CCCTTCCCAAACATTGCCAA 58.945 50.000 0.00 0.00 0.00 4.52
680 684 1.419387 CCCTTCCCAAACATTGCCAAA 59.581 47.619 0.00 0.00 0.00 3.28
681 685 2.493035 CCTTCCCAAACATTGCCAAAC 58.507 47.619 0.00 0.00 0.00 2.93
682 686 2.158842 CCTTCCCAAACATTGCCAAACA 60.159 45.455 0.00 0.00 0.00 2.83
683 687 2.611225 TCCCAAACATTGCCAAACAC 57.389 45.000 0.00 0.00 0.00 3.32
684 688 1.202463 TCCCAAACATTGCCAAACACG 60.202 47.619 0.00 0.00 0.00 4.49
685 689 0.581053 CCAAACATTGCCAAACACGC 59.419 50.000 0.00 0.00 0.00 5.34
686 690 1.569708 CAAACATTGCCAAACACGCT 58.430 45.000 0.00 0.00 0.00 5.07
687 691 1.258458 CAAACATTGCCAAACACGCTG 59.742 47.619 0.00 0.00 0.00 5.18
698 702 0.182775 AACACGCTGAGGAAAAGGGT 59.817 50.000 0.00 0.00 41.07 4.34
711 715 3.265995 GGAAAAGGGTTGGAGATGGTCTA 59.734 47.826 0.00 0.00 0.00 2.59
715 719 4.014273 AGGGTTGGAGATGGTCTAAGAT 57.986 45.455 0.00 0.00 0.00 2.40
753 757 2.490115 GTGAGTTCGAGGACTGAGTCAT 59.510 50.000 15.33 7.31 33.68 3.06
756 760 2.490115 AGTTCGAGGACTGAGTCATCAC 59.510 50.000 24.47 16.52 42.49 3.06
761 765 1.273606 AGGACTGAGTCATCACCAACG 59.726 52.381 15.33 0.00 33.68 4.10
763 767 2.329379 GACTGAGTCATCACCAACGAC 58.671 52.381 7.90 0.00 32.09 4.34
764 768 1.000955 ACTGAGTCATCACCAACGACC 59.999 52.381 0.00 0.00 0.00 4.79
765 769 0.038618 TGAGTCATCACCAACGACCG 60.039 55.000 0.00 0.00 0.00 4.79
817 2221 0.667487 CGTGAGCATGAGTCAACGGT 60.667 55.000 0.00 0.00 0.00 4.83
818 2222 0.792640 GTGAGCATGAGTCAACGGTG 59.207 55.000 0.00 0.00 0.00 4.94
819 2223 0.678950 TGAGCATGAGTCAACGGTGA 59.321 50.000 0.00 0.00 0.00 4.02
986 2409 4.752879 CTACCGCCACCACCACCG 62.753 72.222 0.00 0.00 0.00 4.94
1195 2916 2.438795 GCCTCGTCGAGACCTCCT 60.439 66.667 23.74 0.00 0.00 3.69
1329 3050 4.368543 GCCCCGGTCGACGTCTTT 62.369 66.667 14.70 0.00 42.24 2.52
1722 3443 1.883084 CCGGCTGTCGTCTTATGGC 60.883 63.158 0.00 0.00 37.11 4.40
1726 3447 0.924090 GCTGTCGTCTTATGGCTTCG 59.076 55.000 0.00 0.00 0.00 3.79
1743 3464 2.583593 GAGCCCGACATCGTCAGC 60.584 66.667 0.00 0.71 37.74 4.26
1752 3473 1.202582 GACATCGTCAGCTACACCACT 59.797 52.381 0.00 0.00 32.09 4.00
1773 3494 2.433446 CTCAAGGGCCTGTGTGCT 59.567 61.111 6.92 0.00 0.00 4.40
1827 3548 2.842496 TGCTGAGATGGTGGAGAAGAAT 59.158 45.455 0.00 0.00 0.00 2.40
1836 3557 1.298157 TGGAGAAGAATTGCGTGCCG 61.298 55.000 0.00 0.00 0.00 5.69
2124 3845 0.820891 ATGCCAAGGAGCTATTGCCG 60.821 55.000 5.76 0.00 40.80 5.69
2135 3856 1.051812 CTATTGCCGGAGATGGTCCT 58.948 55.000 5.05 0.00 44.35 3.85
2658 4379 2.446435 CATGGTTTGGTCAGTAAGGGG 58.554 52.381 0.00 0.00 0.00 4.79
2964 4685 7.418408 CACGATATGTACTGAGTGAGTTGTAT 58.582 38.462 0.00 0.00 35.96 2.29
3131 4852 1.267574 TGAGTCTCCATGGGCCTCAC 61.268 60.000 18.92 7.70 0.00 3.51
3134 4855 0.329596 GTCTCCATGGGCCTCACTTT 59.670 55.000 13.02 0.00 0.00 2.66
3142 4863 1.583477 GGCCTCACTTTCAGCAAGC 59.417 57.895 0.00 0.00 35.65 4.01
3160 4881 1.077501 CTGGAATCGGGTGGCATGT 60.078 57.895 0.00 0.00 0.00 3.21
3272 4994 6.184789 TCCAGGTGTCTTAGTTTTGACTTTT 58.815 36.000 0.00 0.00 34.57 2.27
3276 4998 8.674607 CAGGTGTCTTAGTTTTGACTTTTAACT 58.325 33.333 0.00 0.00 36.23 2.24
3570 5462 8.211629 ACTAACAGAAGTTATCTTGTTCAGGTT 58.788 33.333 0.00 0.00 39.36 3.50
3611 5503 2.095212 GGAAATCAAAAGGACGGTCTGC 60.095 50.000 8.23 0.00 0.00 4.26
3662 5554 4.755123 GCATGTTCATACTTATAACGGCCT 59.245 41.667 0.00 0.00 0.00 5.19
3761 5653 8.873215 ATTATTTGACTATACTTCTCCGTGTG 57.127 34.615 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.135575 CCAAAGATCAAAGCGCTGTCC 60.136 52.381 12.58 0.00 0.00 4.02
187 188 1.846439 GATGGAGGAAGGACCATGGAA 59.154 52.381 21.47 0.00 45.41 3.53
234 235 5.986135 AGATAACCTCTACACGATGCAATTC 59.014 40.000 0.00 0.00 30.26 2.17
269 270 1.066430 TGGCGAAGGTGGTGAAGATAC 60.066 52.381 0.00 0.00 0.00 2.24
270 271 1.271856 TGGCGAAGGTGGTGAAGATA 58.728 50.000 0.00 0.00 0.00 1.98
280 281 0.112412 ACTTGGGATTTGGCGAAGGT 59.888 50.000 0.00 0.00 0.00 3.50
285 286 1.595093 GGGTCACTTGGGATTTGGCG 61.595 60.000 0.00 0.00 0.00 5.69
299 300 2.673258 TCTATAGGAACATGCGGGTCA 58.327 47.619 0.00 0.00 0.00 4.02
443 444 3.003394 TGGAAGCAATGATGGACGAAT 57.997 42.857 0.00 0.00 0.00 3.34
464 465 2.581354 GGAGCGGCATGACAGACT 59.419 61.111 0.00 0.00 0.00 3.24
465 466 2.512515 GGGAGCGGCATGACAGAC 60.513 66.667 0.00 0.00 0.00 3.51
494 495 1.807814 AGGGAATATGGAGGACGCTT 58.192 50.000 0.00 0.00 0.00 4.68
542 546 0.034380 GAAGGGGCCAGTAGGGTTTC 60.034 60.000 4.39 0.00 39.65 2.78
545 549 1.923909 GTGAAGGGGCCAGTAGGGT 60.924 63.158 4.39 0.00 39.65 4.34
555 559 4.408921 TGATAGGAGTTATGTGTGAAGGGG 59.591 45.833 0.00 0.00 0.00 4.79
558 562 4.504461 GCGTGATAGGAGTTATGTGTGAAG 59.496 45.833 0.00 0.00 0.00 3.02
560 564 3.445805 TGCGTGATAGGAGTTATGTGTGA 59.554 43.478 0.00 0.00 0.00 3.58
561 565 3.551890 GTGCGTGATAGGAGTTATGTGTG 59.448 47.826 0.00 0.00 0.00 3.82
562 566 3.430374 GGTGCGTGATAGGAGTTATGTGT 60.430 47.826 0.00 0.00 0.00 3.72
563 567 3.123804 GGTGCGTGATAGGAGTTATGTG 58.876 50.000 0.00 0.00 0.00 3.21
564 568 2.764010 TGGTGCGTGATAGGAGTTATGT 59.236 45.455 0.00 0.00 0.00 2.29
565 569 3.452755 TGGTGCGTGATAGGAGTTATG 57.547 47.619 0.00 0.00 0.00 1.90
566 570 4.189231 GTTTGGTGCGTGATAGGAGTTAT 58.811 43.478 0.00 0.00 0.00 1.89
567 571 3.007074 TGTTTGGTGCGTGATAGGAGTTA 59.993 43.478 0.00 0.00 0.00 2.24
568 572 2.224426 TGTTTGGTGCGTGATAGGAGTT 60.224 45.455 0.00 0.00 0.00 3.01
569 573 1.346395 TGTTTGGTGCGTGATAGGAGT 59.654 47.619 0.00 0.00 0.00 3.85
570 574 2.002586 CTGTTTGGTGCGTGATAGGAG 58.997 52.381 0.00 0.00 0.00 3.69
571 575 1.621317 TCTGTTTGGTGCGTGATAGGA 59.379 47.619 0.00 0.00 0.00 2.94
572 576 2.002586 CTCTGTTTGGTGCGTGATAGG 58.997 52.381 0.00 0.00 0.00 2.57
573 577 2.002586 CCTCTGTTTGGTGCGTGATAG 58.997 52.381 0.00 0.00 0.00 2.08
574 578 1.621317 TCCTCTGTTTGGTGCGTGATA 59.379 47.619 0.00 0.00 0.00 2.15
575 579 0.396435 TCCTCTGTTTGGTGCGTGAT 59.604 50.000 0.00 0.00 0.00 3.06
576 580 0.396435 ATCCTCTGTTTGGTGCGTGA 59.604 50.000 0.00 0.00 0.00 4.35
577 581 1.069022 CAATCCTCTGTTTGGTGCGTG 60.069 52.381 0.00 0.00 0.00 5.34
578 582 1.238439 CAATCCTCTGTTTGGTGCGT 58.762 50.000 0.00 0.00 0.00 5.24
579 583 0.523072 CCAATCCTCTGTTTGGTGCG 59.477 55.000 0.00 0.00 36.82 5.34
580 584 0.890683 CCCAATCCTCTGTTTGGTGC 59.109 55.000 0.00 0.00 38.96 5.01
581 585 2.584835 TCCCAATCCTCTGTTTGGTG 57.415 50.000 0.00 0.00 38.96 4.17
582 586 3.833559 ATTCCCAATCCTCTGTTTGGT 57.166 42.857 0.00 0.00 38.96 3.67
583 587 6.603940 TTTTATTCCCAATCCTCTGTTTGG 57.396 37.500 0.00 0.00 39.89 3.28
584 588 7.761249 GTCATTTTATTCCCAATCCTCTGTTTG 59.239 37.037 0.00 0.00 0.00 2.93
585 589 7.675619 AGTCATTTTATTCCCAATCCTCTGTTT 59.324 33.333 0.00 0.00 0.00 2.83
586 590 7.184862 AGTCATTTTATTCCCAATCCTCTGTT 58.815 34.615 0.00 0.00 0.00 3.16
587 591 6.735556 AGTCATTTTATTCCCAATCCTCTGT 58.264 36.000 0.00 0.00 0.00 3.41
588 592 7.651027 AAGTCATTTTATTCCCAATCCTCTG 57.349 36.000 0.00 0.00 0.00 3.35
589 593 9.579932 GATAAGTCATTTTATTCCCAATCCTCT 57.420 33.333 0.00 0.00 0.00 3.69
590 594 8.797438 GGATAAGTCATTTTATTCCCAATCCTC 58.203 37.037 0.00 0.00 0.00 3.71
591 595 7.730332 GGGATAAGTCATTTTATTCCCAATCCT 59.270 37.037 0.00 0.00 34.01 3.24
592 596 7.508977 TGGGATAAGTCATTTTATTCCCAATCC 59.491 37.037 5.33 0.00 37.73 3.01
593 597 8.477419 TGGGATAAGTCATTTTATTCCCAATC 57.523 34.615 5.33 0.00 37.73 2.67
594 598 8.873144 CATGGGATAAGTCATTTTATTCCCAAT 58.127 33.333 11.49 0.00 40.15 3.16
595 599 7.843760 ACATGGGATAAGTCATTTTATTCCCAA 59.156 33.333 11.49 0.00 40.15 4.12
596 600 7.361438 ACATGGGATAAGTCATTTTATTCCCA 58.639 34.615 10.01 10.01 40.53 4.37
597 601 7.725844 AGACATGGGATAAGTCATTTTATTCCC 59.274 37.037 0.00 0.00 37.73 3.97
598 602 8.697507 AGACATGGGATAAGTCATTTTATTCC 57.302 34.615 0.00 0.00 38.62 3.01
603 607 9.566432 GAGATTAGACATGGGATAAGTCATTTT 57.434 33.333 0.00 0.00 34.80 1.82
604 608 7.875041 CGAGATTAGACATGGGATAAGTCATTT 59.125 37.037 0.00 0.00 34.80 2.32
605 609 7.382110 CGAGATTAGACATGGGATAAGTCATT 58.618 38.462 0.00 0.00 34.80 2.57
606 610 6.071108 CCGAGATTAGACATGGGATAAGTCAT 60.071 42.308 0.00 0.00 34.80 3.06
607 611 5.243954 CCGAGATTAGACATGGGATAAGTCA 59.756 44.000 0.00 0.00 34.80 3.41
608 612 5.715070 CCGAGATTAGACATGGGATAAGTC 58.285 45.833 0.00 0.00 0.00 3.01
609 613 4.021016 GCCGAGATTAGACATGGGATAAGT 60.021 45.833 0.00 0.00 0.00 2.24
610 614 4.499183 GCCGAGATTAGACATGGGATAAG 58.501 47.826 0.00 0.00 0.00 1.73
611 615 3.260884 GGCCGAGATTAGACATGGGATAA 59.739 47.826 0.00 0.00 0.00 1.75
612 616 2.832129 GGCCGAGATTAGACATGGGATA 59.168 50.000 0.00 0.00 0.00 2.59
613 617 1.625818 GGCCGAGATTAGACATGGGAT 59.374 52.381 0.00 0.00 0.00 3.85
614 618 1.048601 GGCCGAGATTAGACATGGGA 58.951 55.000 0.00 0.00 0.00 4.37
615 619 0.035458 GGGCCGAGATTAGACATGGG 59.965 60.000 0.00 0.00 0.00 4.00
616 620 0.758734 TGGGCCGAGATTAGACATGG 59.241 55.000 0.00 0.00 0.00 3.66
617 621 2.158900 AGTTGGGCCGAGATTAGACATG 60.159 50.000 0.00 0.00 0.00 3.21
618 622 2.103263 GAGTTGGGCCGAGATTAGACAT 59.897 50.000 0.00 0.00 0.00 3.06
619 623 1.480954 GAGTTGGGCCGAGATTAGACA 59.519 52.381 0.00 0.00 0.00 3.41
620 624 1.202545 GGAGTTGGGCCGAGATTAGAC 60.203 57.143 0.00 0.00 0.00 2.59
621 625 1.120530 GGAGTTGGGCCGAGATTAGA 58.879 55.000 0.00 0.00 0.00 2.10
622 626 0.106894 GGGAGTTGGGCCGAGATTAG 59.893 60.000 0.00 0.00 0.00 1.73
623 627 0.326238 AGGGAGTTGGGCCGAGATTA 60.326 55.000 0.00 0.00 0.00 1.75
624 628 1.616628 AGGGAGTTGGGCCGAGATT 60.617 57.895 0.00 0.00 0.00 2.40
625 629 2.041265 AGGGAGTTGGGCCGAGAT 59.959 61.111 0.00 0.00 0.00 2.75
626 630 3.003173 CAGGGAGTTGGGCCGAGA 61.003 66.667 0.00 0.00 0.00 4.04
627 631 4.785453 GCAGGGAGTTGGGCCGAG 62.785 72.222 0.00 0.00 0.00 4.63
629 633 4.785453 GAGCAGGGAGTTGGGCCG 62.785 72.222 0.00 0.00 0.00 6.13
630 634 1.562672 TTAGAGCAGGGAGTTGGGCC 61.563 60.000 0.00 0.00 0.00 5.80
631 635 0.328258 TTTAGAGCAGGGAGTTGGGC 59.672 55.000 0.00 0.00 0.00 5.36
632 636 1.630878 AGTTTAGAGCAGGGAGTTGGG 59.369 52.381 0.00 0.00 0.00 4.12
633 637 2.355209 GGAGTTTAGAGCAGGGAGTTGG 60.355 54.545 0.00 0.00 0.00 3.77
634 638 2.355209 GGGAGTTTAGAGCAGGGAGTTG 60.355 54.545 0.00 0.00 0.00 3.16
635 639 1.909986 GGGAGTTTAGAGCAGGGAGTT 59.090 52.381 0.00 0.00 0.00 3.01
636 640 1.203313 TGGGAGTTTAGAGCAGGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
637 641 1.573108 TGGGAGTTTAGAGCAGGGAG 58.427 55.000 0.00 0.00 0.00 4.30
638 642 2.270434 ATGGGAGTTTAGAGCAGGGA 57.730 50.000 0.00 0.00 0.00 4.20
639 643 2.422093 GGAATGGGAGTTTAGAGCAGGG 60.422 54.545 0.00 0.00 0.00 4.45
640 644 2.422093 GGGAATGGGAGTTTAGAGCAGG 60.422 54.545 0.00 0.00 0.00 4.85
641 645 2.422093 GGGGAATGGGAGTTTAGAGCAG 60.422 54.545 0.00 0.00 0.00 4.24
642 646 1.564348 GGGGAATGGGAGTTTAGAGCA 59.436 52.381 0.00 0.00 0.00 4.26
643 647 1.847088 AGGGGAATGGGAGTTTAGAGC 59.153 52.381 0.00 0.00 0.00 4.09
644 648 3.117851 GGAAGGGGAATGGGAGTTTAGAG 60.118 52.174 0.00 0.00 0.00 2.43
645 649 2.850568 GGAAGGGGAATGGGAGTTTAGA 59.149 50.000 0.00 0.00 0.00 2.10
646 650 2.091830 GGGAAGGGGAATGGGAGTTTAG 60.092 54.545 0.00 0.00 0.00 1.85
647 651 1.927371 GGGAAGGGGAATGGGAGTTTA 59.073 52.381 0.00 0.00 0.00 2.01
648 652 0.710588 GGGAAGGGGAATGGGAGTTT 59.289 55.000 0.00 0.00 0.00 2.66
649 653 0.479589 TGGGAAGGGGAATGGGAGTT 60.480 55.000 0.00 0.00 0.00 3.01
650 654 0.479589 TTGGGAAGGGGAATGGGAGT 60.480 55.000 0.00 0.00 0.00 3.85
651 655 0.709992 TTTGGGAAGGGGAATGGGAG 59.290 55.000 0.00 0.00 0.00 4.30
652 656 0.411848 GTTTGGGAAGGGGAATGGGA 59.588 55.000 0.00 0.00 0.00 4.37
653 657 0.116143 TGTTTGGGAAGGGGAATGGG 59.884 55.000 0.00 0.00 0.00 4.00
654 658 2.236893 CAATGTTTGGGAAGGGGAATGG 59.763 50.000 0.00 0.00 0.00 3.16
655 659 2.355007 GCAATGTTTGGGAAGGGGAATG 60.355 50.000 0.00 0.00 0.00 2.67
656 660 1.908619 GCAATGTTTGGGAAGGGGAAT 59.091 47.619 0.00 0.00 0.00 3.01
657 661 1.347062 GCAATGTTTGGGAAGGGGAA 58.653 50.000 0.00 0.00 0.00 3.97
658 662 0.544120 GGCAATGTTTGGGAAGGGGA 60.544 55.000 0.00 0.00 0.00 4.81
659 663 0.835543 TGGCAATGTTTGGGAAGGGG 60.836 55.000 0.00 0.00 0.00 4.79
660 664 1.055040 TTGGCAATGTTTGGGAAGGG 58.945 50.000 0.00 0.00 0.00 3.95
661 665 2.158842 TGTTTGGCAATGTTTGGGAAGG 60.159 45.455 0.00 0.00 0.00 3.46
662 666 2.871633 GTGTTTGGCAATGTTTGGGAAG 59.128 45.455 0.00 0.00 0.00 3.46
663 667 2.739932 CGTGTTTGGCAATGTTTGGGAA 60.740 45.455 0.00 0.00 0.00 3.97
664 668 1.202463 CGTGTTTGGCAATGTTTGGGA 60.202 47.619 0.00 0.00 0.00 4.37
665 669 1.216122 CGTGTTTGGCAATGTTTGGG 58.784 50.000 0.00 0.00 0.00 4.12
666 670 0.581053 GCGTGTTTGGCAATGTTTGG 59.419 50.000 0.00 0.00 0.00 3.28
667 671 1.258458 CAGCGTGTTTGGCAATGTTTG 59.742 47.619 0.00 0.00 0.00 2.93
668 672 1.135915 TCAGCGTGTTTGGCAATGTTT 59.864 42.857 0.00 0.00 0.00 2.83
669 673 0.743688 TCAGCGTGTTTGGCAATGTT 59.256 45.000 0.00 0.00 0.00 2.71
670 674 0.311790 CTCAGCGTGTTTGGCAATGT 59.688 50.000 0.00 0.00 0.00 2.71
671 675 0.387622 CCTCAGCGTGTTTGGCAATG 60.388 55.000 0.00 0.00 0.00 2.82
672 676 0.537143 TCCTCAGCGTGTTTGGCAAT 60.537 50.000 0.00 0.00 0.00 3.56
673 677 0.749818 TTCCTCAGCGTGTTTGGCAA 60.750 50.000 0.00 0.00 0.00 4.52
674 678 0.749818 TTTCCTCAGCGTGTTTGGCA 60.750 50.000 0.00 0.00 0.00 4.92
675 679 0.383949 TTTTCCTCAGCGTGTTTGGC 59.616 50.000 0.00 0.00 0.00 4.52
676 680 1.001378 CCTTTTCCTCAGCGTGTTTGG 60.001 52.381 0.00 0.00 0.00 3.28
677 681 1.001378 CCCTTTTCCTCAGCGTGTTTG 60.001 52.381 0.00 0.00 0.00 2.93
678 682 1.318576 CCCTTTTCCTCAGCGTGTTT 58.681 50.000 0.00 0.00 0.00 2.83
679 683 0.182775 ACCCTTTTCCTCAGCGTGTT 59.817 50.000 0.00 0.00 0.00 3.32
680 684 0.182775 AACCCTTTTCCTCAGCGTGT 59.817 50.000 0.00 0.00 0.00 4.49
681 685 0.593128 CAACCCTTTTCCTCAGCGTG 59.407 55.000 0.00 0.00 0.00 5.34
682 686 0.537371 CCAACCCTTTTCCTCAGCGT 60.537 55.000 0.00 0.00 0.00 5.07
683 687 0.250727 TCCAACCCTTTTCCTCAGCG 60.251 55.000 0.00 0.00 0.00 5.18
684 688 1.073923 TCTCCAACCCTTTTCCTCAGC 59.926 52.381 0.00 0.00 0.00 4.26
685 689 3.350833 CATCTCCAACCCTTTTCCTCAG 58.649 50.000 0.00 0.00 0.00 3.35
686 690 2.041620 CCATCTCCAACCCTTTTCCTCA 59.958 50.000 0.00 0.00 0.00 3.86
687 691 2.041755 ACCATCTCCAACCCTTTTCCTC 59.958 50.000 0.00 0.00 0.00 3.71
698 702 3.384789 CGGTGATCTTAGACCATCTCCAA 59.615 47.826 0.00 0.00 33.85 3.53
711 715 1.374252 GTCGTGCACCGGTGATCTT 60.374 57.895 38.30 0.00 37.11 2.40
715 719 2.279851 CAAGTCGTGCACCGGTGA 60.280 61.111 38.30 19.89 37.11 4.02
753 757 1.031235 TTGTCTACGGTCGTTGGTGA 58.969 50.000 0.16 0.00 0.00 4.02
756 760 2.091588 CGATTTTGTCTACGGTCGTTGG 59.908 50.000 0.16 0.00 0.00 3.77
761 765 2.787680 CGATCCGATTTTGTCTACGGTC 59.212 50.000 0.00 0.00 44.72 4.79
763 767 3.043586 CTCGATCCGATTTTGTCTACGG 58.956 50.000 0.00 0.00 45.61 4.02
764 768 2.468040 GCTCGATCCGATTTTGTCTACG 59.532 50.000 0.00 0.00 34.61 3.51
765 769 2.795470 GGCTCGATCCGATTTTGTCTAC 59.205 50.000 0.00 0.00 34.61 2.59
817 2221 4.201950 GGAGCGGTAAATCTACGTACTTCA 60.202 45.833 0.00 0.00 0.00 3.02
818 2222 4.201950 TGGAGCGGTAAATCTACGTACTTC 60.202 45.833 0.00 0.00 0.00 3.01
819 2223 3.696051 TGGAGCGGTAAATCTACGTACTT 59.304 43.478 0.00 0.00 0.00 2.24
1329 3050 1.669440 GACGAGGGTGTTGTAGGCA 59.331 57.895 0.00 0.00 0.00 4.75
1554 3275 2.974148 CCGCTGCTCTTGCACACA 60.974 61.111 0.00 0.00 45.31 3.72
1578 3299 1.901085 GAGGACGTTCATGGCCTCT 59.099 57.895 13.14 0.00 42.81 3.69
1726 3447 1.725557 TAGCTGACGATGTCGGGCTC 61.726 60.000 17.62 4.44 40.87 4.70
1743 3464 1.609061 CCCTTGAGCACAGTGGTGTAG 60.609 57.143 10.75 6.84 46.95 2.74
1752 3473 2.113774 CACAGGCCCTTGAGCACA 59.886 61.111 0.00 0.00 0.00 4.57
1836 3557 4.702131 AGCATGTCAAAGGTAACCTCATTC 59.298 41.667 0.00 0.00 30.89 2.67
1878 3599 1.004230 CCTCTCCACCATACCCCCA 59.996 63.158 0.00 0.00 0.00 4.96
2124 3845 4.383226 GGACAGTTCTTTAGGACCATCTCC 60.383 50.000 0.00 0.00 39.81 3.71
2135 3856 4.508405 CCTCATTTGGGGGACAGTTCTTTA 60.508 45.833 0.00 0.00 0.00 1.85
2926 4647 3.118261 ACATATCGTGCCTCCTTCAACAT 60.118 43.478 0.00 0.00 0.00 2.71
2964 4685 2.831685 TGCTTAGAACTCCTTTCGCA 57.168 45.000 0.00 0.00 39.47 5.10
3026 4747 6.933521 ACTCTTCAGTAATAAGGCATATGCAG 59.066 38.462 28.07 13.91 44.36 4.41
3131 4852 1.131883 CCGATTCCAGCTTGCTGAAAG 59.868 52.381 22.50 7.49 39.07 2.62
3134 4855 1.078214 CCCGATTCCAGCTTGCTGA 60.078 57.895 22.50 5.39 0.00 4.26
3142 4863 0.680921 AACATGCCACCCGATTCCAG 60.681 55.000 0.00 0.00 0.00 3.86
3160 4881 4.916983 AGCTTGAAGCACACACATAAAA 57.083 36.364 20.45 0.00 45.56 1.52
3276 4998 0.674581 CTCTGTTCTGCAATCCCGCA 60.675 55.000 0.00 0.00 40.32 5.69
3570 5462 7.469537 TTTCCTTGGTCTTCACACTTAAAAA 57.530 32.000 0.00 0.00 0.00 1.94
3574 5466 5.935945 TGATTTCCTTGGTCTTCACACTTA 58.064 37.500 0.00 0.00 0.00 2.24
3761 5653 9.705290 ATGGAAGACAAACCAAAATGTTTATAC 57.295 29.630 0.00 0.00 39.69 1.47
3819 5711 2.576191 AGCATAGTTAACAAGGCCCTGA 59.424 45.455 8.77 0.00 0.00 3.86
3877 5769 7.923414 GACCACTTAGTCCATAATTCAAACT 57.077 36.000 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.