Multiple sequence alignment - TraesCS3B01G350800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G350800 chr3B 100.000 1765 0 0 1 1765 561040083 561038319 0.000000e+00 3260.0
1 TraesCS3B01G350800 chr3B 83.841 755 73 27 663 1389 561045053 561044320 0.000000e+00 673.0
2 TraesCS3B01G350800 chr3B 85.747 435 45 5 971 1389 561889177 561889610 6.050000e-121 444.0
3 TraesCS3B01G350800 chr3B 100.000 235 0 0 2150 2384 561037934 561037700 3.640000e-118 435.0
4 TraesCS3B01G350800 chr3B 82.984 429 52 11 978 1387 561592569 561592995 3.740000e-98 368.0
5 TraesCS3B01G350800 chr3B 82.299 435 48 16 978 1385 561840781 561841213 1.360000e-92 350.0
6 TraesCS3B01G350800 chr3B 80.226 177 34 1 2205 2381 639145566 639145741 5.350000e-27 132.0
7 TraesCS3B01G350800 chr3B 89.655 87 8 1 1575 1660 805684860 805684946 2.510000e-20 110.0
8 TraesCS3B01G350800 chr3B 89.024 82 8 1 1582 1662 149462153 149462072 1.510000e-17 100.0
9 TraesCS3B01G350800 chr3D 94.609 742 32 5 660 1399 428994716 428993981 0.000000e+00 1142.0
10 TraesCS3B01G350800 chr3D 84.182 746 77 23 663 1389 429086044 429085321 0.000000e+00 686.0
11 TraesCS3B01G350800 chr3D 96.353 329 12 0 334 662 7428778 7429106 2.080000e-150 542.0
12 TraesCS3B01G350800 chr3D 95.833 336 13 1 335 669 507868340 507868675 2.080000e-150 542.0
13 TraesCS3B01G350800 chr3D 95.536 336 14 1 335 669 273267148 273267483 9.700000e-149 536.0
14 TraesCS3B01G350800 chr3D 87.879 429 40 5 968 1389 429647482 429647905 5.920000e-136 494.0
15 TraesCS3B01G350800 chr3D 89.504 343 19 9 2 336 428995048 428994715 3.670000e-113 418.0
16 TraesCS3B01G350800 chr3D 84.368 435 54 9 965 1387 429637253 429637685 4.740000e-112 414.0
17 TraesCS3B01G350800 chr3D 83.198 369 28 15 1383 1730 428993964 428993609 8.280000e-80 307.0
18 TraesCS3B01G350800 chr3D 91.905 210 16 1 1180 1389 429044021 429043813 2.320000e-75 292.0
19 TraesCS3B01G350800 chr3D 84.681 235 20 11 2164 2384 428993504 428993272 1.110000e-53 220.0
20 TraesCS3B01G350800 chr3D 83.613 238 26 9 897 1130 429044327 429044099 6.680000e-51 211.0
21 TraesCS3B01G350800 chr3D 82.143 224 17 10 663 875 429046938 429046727 1.130000e-38 171.0
22 TraesCS3B01G350800 chr3A 87.650 834 60 22 919 1730 556683134 556683946 0.000000e+00 929.0
23 TraesCS3B01G350800 chr3A 85.539 408 42 5 996 1389 556260854 556260450 6.130000e-111 411.0
24 TraesCS3B01G350800 chr3A 94.091 220 13 0 1180 1399 556678655 556678874 3.800000e-88 335.0
25 TraesCS3B01G350800 chr3A 94.828 58 3 0 2237 2294 512577966 512577909 9.070000e-15 91.6
26 TraesCS3B01G350800 chr3A 90.385 52 5 0 2234 2285 629626222 629626171 4.250000e-08 69.4
27 TraesCS3B01G350800 chr1D 95.870 339 13 1 324 661 156265584 156265922 4.480000e-152 547.0
28 TraesCS3B01G350800 chr1D 95.536 336 14 1 335 669 267864082 267864417 9.700000e-149 536.0
29 TraesCS3B01G350800 chr7B 96.646 328 10 1 335 661 6298155 6298482 5.800000e-151 544.0
30 TraesCS3B01G350800 chr7B 88.095 84 9 1 1578 1660 682239873 682239790 5.420000e-17 99.0
31 TraesCS3B01G350800 chr5B 96.073 331 13 0 334 664 17715348 17715018 7.500000e-150 540.0
32 TraesCS3B01G350800 chr5B 89.412 85 8 1 1575 1658 329149284 329149200 3.240000e-19 106.0
33 TraesCS3B01G350800 chr5B 89.024 82 8 1 1579 1659 400096478 400096559 1.510000e-17 100.0
34 TraesCS3B01G350800 chr1B 96.341 328 12 0 334 661 5873004 5873331 7.500000e-150 540.0
35 TraesCS3B01G350800 chr1B 87.500 88 10 1 1575 1661 314565615 314565702 1.510000e-17 100.0
36 TraesCS3B01G350800 chr6D 95.536 336 14 1 335 669 153352091 153351756 9.700000e-149 536.0
37 TraesCS3B01G350800 chr4A 88.636 88 9 1 1575 1661 213025502 213025415 3.240000e-19 106.0
38 TraesCS3B01G350800 chr4B 76.882 186 41 2 2193 2376 472670528 472670343 1.170000e-18 104.0
39 TraesCS3B01G350800 chrUn 88.235 85 9 1 1575 1658 31770511 31770427 1.510000e-17 100.0
40 TraesCS3B01G350800 chrUn 100.000 28 0 0 2234 2261 45399048 45399075 4.000000e-03 52.8
41 TraesCS3B01G350800 chr7D 87.952 83 9 1 1577 1658 176573084 176573166 1.950000e-16 97.1
42 TraesCS3B01G350800 chr2A 86.486 74 9 1 2234 2307 563774268 563774196 1.960000e-11 80.5
43 TraesCS3B01G350800 chr6B 80.952 105 10 5 2190 2284 665584730 665584626 9.140000e-10 75.0
44 TraesCS3B01G350800 chr5D 88.235 51 6 0 2234 2284 361579948 361579998 7.120000e-06 62.1
45 TraesCS3B01G350800 chr5A 100.000 28 0 0 2234 2261 824811 824784 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G350800 chr3B 561037700 561040083 2383 True 1847.500000 3260 100.000 1 2384 2 chr3B.!!$R3 2383
1 TraesCS3B01G350800 chr3B 561044320 561045053 733 True 673.000000 673 83.841 663 1389 1 chr3B.!!$R2 726
2 TraesCS3B01G350800 chr3D 429085321 429086044 723 True 686.000000 686 84.182 663 1389 1 chr3D.!!$R1 726
3 TraesCS3B01G350800 chr3D 428993272 428995048 1776 True 521.750000 1142 87.998 2 2384 4 chr3D.!!$R2 2382
4 TraesCS3B01G350800 chr3D 429043813 429046938 3125 True 224.666667 292 85.887 663 1389 3 chr3D.!!$R3 726
5 TraesCS3B01G350800 chr3A 556683134 556683946 812 False 929.000000 929 87.650 919 1730 1 chr3A.!!$F2 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 3296 0.250381 GGCTCTCTCATCATGCCCAG 60.25 60.0 0.0 0.0 37.81 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2361 4906 0.39113 CGGCCGGAGTTGATTTCTCA 60.391 55.0 20.1 0.0 34.04 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.433425 GCATTTGTTTCATAGGAATAGAAGTGC 59.567 37.037 10.83 10.83 31.17 4.40
59 60 8.734593 AATAGAAGTGCTAGATTCCTAAGGAT 57.265 34.615 0.00 0.00 31.33 3.24
64 65 6.706295 AGTGCTAGATTCCTAAGGATTATGC 58.294 40.000 0.00 0.00 0.00 3.14
80 81 7.349598 AGGATTATGCCCATATTGACCTAATC 58.650 38.462 0.00 0.00 0.00 1.75
132 141 7.446013 CGAGGATTCTTAGTATTAGGTGAGACT 59.554 40.741 0.00 0.00 0.00 3.24
134 143 9.138596 AGGATTCTTAGTATTAGGTGAGACTTC 57.861 37.037 0.00 0.00 0.00 3.01
138 147 8.239038 TCTTAGTATTAGGTGAGACTTCATGG 57.761 38.462 0.00 0.00 35.39 3.66
231 240 3.529634 TTGTAAAACGAATGAGCCGTG 57.470 42.857 0.00 0.00 40.44 4.94
233 242 3.132160 TGTAAAACGAATGAGCCGTGAA 58.868 40.909 0.00 0.00 40.44 3.18
253 262 8.661257 CCGTGAAATATGTACTTGTATCAAACA 58.339 33.333 0.00 0.00 35.88 2.83
260 269 5.804639 TGTACTTGTATCAAACATGGAGCT 58.195 37.500 0.00 0.00 38.10 4.09
295 304 2.095059 CCTCAGCCAAAATCGTTCCAAG 60.095 50.000 0.00 0.00 0.00 3.61
317 326 4.694509 AGACGGTTGTACTCACACTAGTAG 59.305 45.833 0.00 0.00 33.30 2.57
318 327 4.392940 ACGGTTGTACTCACACTAGTAGT 58.607 43.478 0.00 0.00 33.30 2.73
319 328 5.551233 ACGGTTGTACTCACACTAGTAGTA 58.449 41.667 1.57 0.00 33.30 1.82
320 329 6.176183 ACGGTTGTACTCACACTAGTAGTAT 58.824 40.000 1.57 0.00 33.30 2.12
321 330 7.331026 ACGGTTGTACTCACACTAGTAGTATA 58.669 38.462 1.57 2.79 33.30 1.47
345 354 9.990868 ATATAACAAAACAAATACTCCCTCCTT 57.009 29.630 0.00 0.00 0.00 3.36
346 355 8.721133 ATAACAAAACAAATACTCCCTCCTTT 57.279 30.769 0.00 0.00 0.00 3.11
347 356 7.432148 AACAAAACAAATACTCCCTCCTTTT 57.568 32.000 0.00 0.00 0.00 2.27
348 357 7.050970 ACAAAACAAATACTCCCTCCTTTTC 57.949 36.000 0.00 0.00 0.00 2.29
349 358 5.959618 AAACAAATACTCCCTCCTTTTCG 57.040 39.130 0.00 0.00 0.00 3.46
350 359 3.951663 ACAAATACTCCCTCCTTTTCGG 58.048 45.455 0.00 0.00 0.00 4.30
351 360 3.329814 ACAAATACTCCCTCCTTTTCGGT 59.670 43.478 0.00 0.00 0.00 4.69
352 361 4.202535 ACAAATACTCCCTCCTTTTCGGTT 60.203 41.667 0.00 0.00 0.00 4.44
353 362 4.652679 AATACTCCCTCCTTTTCGGTTT 57.347 40.909 0.00 0.00 0.00 3.27
354 363 5.767277 AATACTCCCTCCTTTTCGGTTTA 57.233 39.130 0.00 0.00 0.00 2.01
355 364 5.970501 ATACTCCCTCCTTTTCGGTTTAT 57.029 39.130 0.00 0.00 0.00 1.40
356 365 7.441903 AATACTCCCTCCTTTTCGGTTTATA 57.558 36.000 0.00 0.00 0.00 0.98
357 366 5.354842 ACTCCCTCCTTTTCGGTTTATAG 57.645 43.478 0.00 0.00 0.00 1.31
358 367 4.163649 ACTCCCTCCTTTTCGGTTTATAGG 59.836 45.833 0.00 0.00 0.00 2.57
359 368 3.457012 TCCCTCCTTTTCGGTTTATAGGG 59.543 47.826 0.00 0.00 41.33 3.53
360 369 3.211865 CCTCCTTTTCGGTTTATAGGGC 58.788 50.000 0.00 0.00 0.00 5.19
361 370 3.118000 CCTCCTTTTCGGTTTATAGGGCT 60.118 47.826 0.00 0.00 0.00 5.19
362 371 4.524053 CTCCTTTTCGGTTTATAGGGCTT 58.476 43.478 0.00 0.00 0.00 4.35
363 372 5.397109 CCTCCTTTTCGGTTTATAGGGCTTA 60.397 44.000 0.00 0.00 0.00 3.09
364 373 6.256643 TCCTTTTCGGTTTATAGGGCTTAT 57.743 37.500 0.00 0.00 0.00 1.73
365 374 6.293698 TCCTTTTCGGTTTATAGGGCTTATC 58.706 40.000 0.00 0.00 0.00 1.75
366 375 6.100714 TCCTTTTCGGTTTATAGGGCTTATCT 59.899 38.462 0.00 0.00 0.00 1.98
367 376 6.771267 CCTTTTCGGTTTATAGGGCTTATCTT 59.229 38.462 0.00 0.00 0.00 2.40
368 377 7.935210 CCTTTTCGGTTTATAGGGCTTATCTTA 59.065 37.037 0.00 0.00 0.00 2.10
369 378 9.333724 CTTTTCGGTTTATAGGGCTTATCTTAA 57.666 33.333 0.00 0.00 0.00 1.85
370 379 9.683870 TTTTCGGTTTATAGGGCTTATCTTAAA 57.316 29.630 0.00 0.00 0.00 1.52
371 380 9.683870 TTTCGGTTTATAGGGCTTATCTTAAAA 57.316 29.630 0.00 0.00 0.00 1.52
372 381 9.856162 TTCGGTTTATAGGGCTTATCTTAAAAT 57.144 29.630 0.00 0.00 0.00 1.82
373 382 9.856162 TCGGTTTATAGGGCTTATCTTAAAATT 57.144 29.630 0.00 0.00 0.00 1.82
405 414 9.447157 TTTTCCATTTTATAAGGCTCAATTTGG 57.553 29.630 0.00 0.00 0.00 3.28
406 415 7.732222 TCCATTTTATAAGGCTCAATTTGGT 57.268 32.000 0.00 0.00 0.00 3.67
407 416 8.144862 TCCATTTTATAAGGCTCAATTTGGTT 57.855 30.769 0.00 0.00 0.00 3.67
408 417 8.040132 TCCATTTTATAAGGCTCAATTTGGTTG 58.960 33.333 0.00 0.00 39.25 3.77
409 418 7.823799 CCATTTTATAAGGCTCAATTTGGTTGT 59.176 33.333 0.00 0.00 38.95 3.32
410 419 9.218440 CATTTTATAAGGCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
411 420 9.791801 ATTTTATAAGGCTCAATTTGGTTGTTT 57.208 25.926 0.00 0.00 38.95 2.83
412 421 8.825667 TTTATAAGGCTCAATTTGGTTGTTTC 57.174 30.769 0.00 0.00 38.95 2.78
413 422 3.751479 AGGCTCAATTTGGTTGTTTCC 57.249 42.857 0.00 0.00 38.95 3.13
414 423 2.368548 AGGCTCAATTTGGTTGTTTCCC 59.631 45.455 0.00 0.00 38.95 3.97
415 424 2.103941 GGCTCAATTTGGTTGTTTCCCA 59.896 45.455 0.00 0.00 38.95 4.37
416 425 3.244526 GGCTCAATTTGGTTGTTTCCCAT 60.245 43.478 0.00 0.00 38.95 4.00
417 426 3.996363 GCTCAATTTGGTTGTTTCCCATC 59.004 43.478 0.00 0.00 38.95 3.51
418 427 4.502950 GCTCAATTTGGTTGTTTCCCATCA 60.503 41.667 0.00 0.00 38.95 3.07
419 428 4.954875 TCAATTTGGTTGTTTCCCATCAC 58.045 39.130 0.00 0.00 38.95 3.06
420 429 4.406972 TCAATTTGGTTGTTTCCCATCACA 59.593 37.500 0.00 0.00 38.95 3.58
421 430 5.071519 TCAATTTGGTTGTTTCCCATCACAT 59.928 36.000 0.00 0.00 38.95 3.21
422 431 4.333913 TTTGGTTGTTTCCCATCACATG 57.666 40.909 0.00 0.00 0.00 3.21
423 432 2.956132 TGGTTGTTTCCCATCACATGT 58.044 42.857 0.00 0.00 0.00 3.21
424 433 3.303938 TGGTTGTTTCCCATCACATGTT 58.696 40.909 0.00 0.00 0.00 2.71
425 434 3.320541 TGGTTGTTTCCCATCACATGTTC 59.679 43.478 0.00 0.00 0.00 3.18
426 435 3.320541 GGTTGTTTCCCATCACATGTTCA 59.679 43.478 0.00 0.00 0.00 3.18
427 436 4.549458 GTTGTTTCCCATCACATGTTCAG 58.451 43.478 0.00 0.00 0.00 3.02
428 437 4.097551 TGTTTCCCATCACATGTTCAGA 57.902 40.909 0.00 0.00 0.00 3.27
429 438 4.665451 TGTTTCCCATCACATGTTCAGAT 58.335 39.130 0.00 0.00 0.00 2.90
430 439 5.078949 TGTTTCCCATCACATGTTCAGATT 58.921 37.500 0.00 0.00 0.00 2.40
431 440 5.183713 TGTTTCCCATCACATGTTCAGATTC 59.816 40.000 0.00 0.00 0.00 2.52
432 441 3.889815 TCCCATCACATGTTCAGATTCC 58.110 45.455 0.00 0.00 0.00 3.01
433 442 3.266513 TCCCATCACATGTTCAGATTCCA 59.733 43.478 0.00 0.00 0.00 3.53
434 443 4.018490 CCCATCACATGTTCAGATTCCAA 58.982 43.478 0.00 0.00 0.00 3.53
435 444 4.097437 CCCATCACATGTTCAGATTCCAAG 59.903 45.833 0.00 0.00 0.00 3.61
436 445 4.097437 CCATCACATGTTCAGATTCCAAGG 59.903 45.833 0.00 0.00 0.00 3.61
437 446 4.371624 TCACATGTTCAGATTCCAAGGT 57.628 40.909 0.00 0.00 0.00 3.50
438 447 4.074259 TCACATGTTCAGATTCCAAGGTG 58.926 43.478 0.00 0.00 0.00 4.00
439 448 2.821969 ACATGTTCAGATTCCAAGGTGC 59.178 45.455 0.00 0.00 0.00 5.01
440 449 2.655090 TGTTCAGATTCCAAGGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
441 450 3.159213 TGTTCAGATTCCAAGGTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
442 451 3.499338 TGTTCAGATTCCAAGGTGCATT 58.501 40.909 0.00 0.00 0.00 3.56
443 452 4.661222 TGTTCAGATTCCAAGGTGCATTA 58.339 39.130 0.00 0.00 0.00 1.90
444 453 5.076182 TGTTCAGATTCCAAGGTGCATTAA 58.924 37.500 0.00 0.00 0.00 1.40
445 454 5.538053 TGTTCAGATTCCAAGGTGCATTAAA 59.462 36.000 0.00 0.00 0.00 1.52
446 455 5.643379 TCAGATTCCAAGGTGCATTAAAC 57.357 39.130 0.00 0.00 0.00 2.01
447 456 4.462483 TCAGATTCCAAGGTGCATTAAACC 59.538 41.667 0.00 0.00 38.03 3.27
448 457 4.220382 CAGATTCCAAGGTGCATTAAACCA 59.780 41.667 0.00 0.00 40.40 3.67
449 458 5.025453 AGATTCCAAGGTGCATTAAACCAT 58.975 37.500 0.00 0.00 40.40 3.55
450 459 5.484998 AGATTCCAAGGTGCATTAAACCATT 59.515 36.000 0.00 0.00 40.40 3.16
451 460 4.533919 TCCAAGGTGCATTAAACCATTG 57.466 40.909 0.00 0.00 40.40 2.82
452 461 3.002102 CCAAGGTGCATTAAACCATTGC 58.998 45.455 0.00 0.00 40.40 3.56
453 462 3.556633 CCAAGGTGCATTAAACCATTGCA 60.557 43.478 0.00 0.00 43.63 4.08
454 463 4.255301 CAAGGTGCATTAAACCATTGCAT 58.745 39.130 4.14 0.00 46.90 3.96
455 464 3.864243 AGGTGCATTAAACCATTGCATG 58.136 40.909 4.14 0.00 46.90 4.06
456 465 2.352342 GGTGCATTAAACCATTGCATGC 59.648 45.455 11.82 11.82 46.90 4.06
457 466 3.001414 GTGCATTAAACCATTGCATGCA 58.999 40.909 18.46 18.46 46.90 3.96
458 467 3.436015 GTGCATTAAACCATTGCATGCAA 59.564 39.130 33.57 33.57 46.90 4.08
459 468 3.685272 TGCATTAAACCATTGCATGCAAG 59.315 39.130 34.15 24.82 40.64 4.01
460 469 3.685756 GCATTAAACCATTGCATGCAAGT 59.314 39.130 34.15 25.45 39.47 3.16
461 470 4.869297 GCATTAAACCATTGCATGCAAGTA 59.131 37.500 34.15 15.95 39.47 2.24
462 471 5.524646 GCATTAAACCATTGCATGCAAGTAT 59.475 36.000 34.15 20.47 39.47 2.12
463 472 6.037391 GCATTAAACCATTGCATGCAAGTATT 59.963 34.615 34.15 26.08 39.47 1.89
464 473 7.224362 GCATTAAACCATTGCATGCAAGTATTA 59.776 33.333 34.15 25.22 39.47 0.98
465 474 9.096160 CATTAAACCATTGCATGCAAGTATTAA 57.904 29.630 34.15 29.91 39.47 1.40
466 475 8.700722 TTAAACCATTGCATGCAAGTATTAAG 57.299 30.769 34.15 19.88 39.47 1.85
467 476 6.528537 AACCATTGCATGCAAGTATTAAGA 57.471 33.333 34.15 12.14 39.47 2.10
468 477 6.140303 ACCATTGCATGCAAGTATTAAGAG 57.860 37.500 34.15 17.67 39.47 2.85
469 478 5.887598 ACCATTGCATGCAAGTATTAAGAGA 59.112 36.000 34.15 10.85 39.47 3.10
470 479 6.377996 ACCATTGCATGCAAGTATTAAGAGAA 59.622 34.615 34.15 10.64 39.47 2.87
471 480 7.093814 ACCATTGCATGCAAGTATTAAGAGAAA 60.094 33.333 34.15 10.19 39.47 2.52
472 481 7.760794 CCATTGCATGCAAGTATTAAGAGAAAA 59.239 33.333 34.15 9.52 39.47 2.29
473 482 9.309516 CATTGCATGCAAGTATTAAGAGAAAAT 57.690 29.630 34.15 12.14 39.47 1.82
474 483 9.880157 ATTGCATGCAAGTATTAAGAGAAAATT 57.120 25.926 34.15 11.77 39.47 1.82
475 484 8.692110 TGCATGCAAGTATTAAGAGAAAATTG 57.308 30.769 20.30 0.00 0.00 2.32
476 485 8.522003 TGCATGCAAGTATTAAGAGAAAATTGA 58.478 29.630 20.30 0.00 0.00 2.57
477 486 8.801913 GCATGCAAGTATTAAGAGAAAATTGAC 58.198 33.333 14.21 0.00 0.00 3.18
478 487 9.294030 CATGCAAGTATTAAGAGAAAATTGACC 57.706 33.333 0.00 0.00 0.00 4.02
479 488 8.402798 TGCAAGTATTAAGAGAAAATTGACCA 57.597 30.769 0.00 0.00 0.00 4.02
480 489 8.855110 TGCAAGTATTAAGAGAAAATTGACCAA 58.145 29.630 0.00 0.00 0.00 3.67
481 490 9.860898 GCAAGTATTAAGAGAAAATTGACCAAT 57.139 29.630 0.00 0.00 0.00 3.16
483 492 9.860898 AAGTATTAAGAGAAAATTGACCAATGC 57.139 29.630 0.00 0.00 0.00 3.56
484 493 9.023962 AGTATTAAGAGAAAATTGACCAATGCA 57.976 29.630 0.00 0.00 0.00 3.96
485 494 9.807649 GTATTAAGAGAAAATTGACCAATGCAT 57.192 29.630 0.00 0.00 0.00 3.96
486 495 8.712285 ATTAAGAGAAAATTGACCAATGCATG 57.288 30.769 0.00 0.00 0.00 4.06
487 496 5.733620 AGAGAAAATTGACCAATGCATGT 57.266 34.783 0.00 0.00 0.00 3.21
488 497 6.839124 AGAGAAAATTGACCAATGCATGTA 57.161 33.333 0.00 0.00 0.00 2.29
489 498 7.230849 AGAGAAAATTGACCAATGCATGTAA 57.769 32.000 0.00 0.00 0.00 2.41
490 499 7.844009 AGAGAAAATTGACCAATGCATGTAAT 58.156 30.769 0.00 0.00 0.00 1.89
491 500 8.316214 AGAGAAAATTGACCAATGCATGTAATT 58.684 29.630 0.00 0.83 0.00 1.40
492 501 8.851541 AGAAAATTGACCAATGCATGTAATTT 57.148 26.923 0.00 6.84 31.84 1.82
493 502 9.941325 AGAAAATTGACCAATGCATGTAATTTA 57.059 25.926 0.00 0.00 31.07 1.40
560 569 9.612066 TTTTTGAGGAAAACAAGAGCATTAATT 57.388 25.926 0.00 0.00 32.44 1.40
561 570 8.592105 TTTGAGGAAAACAAGAGCATTAATTG 57.408 30.769 0.00 0.00 0.00 2.32
562 571 6.690530 TGAGGAAAACAAGAGCATTAATTGG 58.309 36.000 0.00 0.00 0.00 3.16
563 572 6.041423 AGGAAAACAAGAGCATTAATTGGG 57.959 37.500 0.00 0.00 0.00 4.12
564 573 5.543790 AGGAAAACAAGAGCATTAATTGGGT 59.456 36.000 0.00 0.00 0.00 4.51
565 574 5.639082 GGAAAACAAGAGCATTAATTGGGTG 59.361 40.000 0.00 0.00 0.00 4.61
566 575 3.874392 ACAAGAGCATTAATTGGGTGC 57.126 42.857 4.05 4.05 39.10 5.01
572 581 4.622260 AGCATTAATTGGGTGCTTTTGT 57.378 36.364 7.86 0.00 46.29 2.83
573 582 5.736951 AGCATTAATTGGGTGCTTTTGTA 57.263 34.783 7.86 0.00 46.29 2.41
574 583 6.107901 AGCATTAATTGGGTGCTTTTGTAA 57.892 33.333 7.86 0.00 46.29 2.41
575 584 6.529220 AGCATTAATTGGGTGCTTTTGTAAA 58.471 32.000 7.86 0.00 46.29 2.01
576 585 6.426633 AGCATTAATTGGGTGCTTTTGTAAAC 59.573 34.615 7.86 0.00 46.29 2.01
577 586 6.426633 GCATTAATTGGGTGCTTTTGTAAACT 59.573 34.615 4.80 0.00 36.02 2.66
578 587 7.360017 GCATTAATTGGGTGCTTTTGTAAACTC 60.360 37.037 4.80 0.00 36.02 3.01
579 588 4.600692 ATTGGGTGCTTTTGTAAACTCC 57.399 40.909 0.00 0.00 0.00 3.85
580 589 3.019799 TGGGTGCTTTTGTAAACTCCA 57.980 42.857 0.00 0.00 0.00 3.86
581 590 3.366396 TGGGTGCTTTTGTAAACTCCAA 58.634 40.909 0.00 0.00 0.00 3.53
582 591 3.769844 TGGGTGCTTTTGTAAACTCCAAA 59.230 39.130 0.00 0.00 0.00 3.28
583 592 4.223032 TGGGTGCTTTTGTAAACTCCAAAA 59.777 37.500 0.00 0.00 38.95 2.44
592 601 7.899648 TTTGTAAACTCCAAAAGGTATTCCA 57.100 32.000 0.00 0.00 35.89 3.53
593 602 6.887626 TGTAAACTCCAAAAGGTATTCCAC 57.112 37.500 0.00 0.00 35.89 4.02
605 614 3.914426 GTATTCCACCACTCACCATCT 57.086 47.619 0.00 0.00 0.00 2.90
607 616 3.914426 ATTCCACCACTCACCATCTAC 57.086 47.619 0.00 0.00 0.00 2.59
608 617 1.568504 TCCACCACTCACCATCTACC 58.431 55.000 0.00 0.00 0.00 3.18
609 618 1.078823 TCCACCACTCACCATCTACCT 59.921 52.381 0.00 0.00 0.00 3.08
610 619 1.909302 CCACCACTCACCATCTACCTT 59.091 52.381 0.00 0.00 0.00 3.50
611 620 2.355108 CCACCACTCACCATCTACCTTG 60.355 54.545 0.00 0.00 0.00 3.61
612 621 2.567169 CACCACTCACCATCTACCTTGA 59.433 50.000 0.00 0.00 0.00 3.02
613 622 3.198635 CACCACTCACCATCTACCTTGAT 59.801 47.826 0.00 0.00 0.00 2.57
614 623 3.846588 ACCACTCACCATCTACCTTGATT 59.153 43.478 0.00 0.00 0.00 2.57
615 624 4.194640 CCACTCACCATCTACCTTGATTG 58.805 47.826 0.00 0.00 0.00 2.67
616 625 4.194640 CACTCACCATCTACCTTGATTGG 58.805 47.826 0.00 0.00 0.00 3.16
617 626 3.846588 ACTCACCATCTACCTTGATTGGT 59.153 43.478 0.00 0.00 43.66 3.67
618 627 4.194640 CTCACCATCTACCTTGATTGGTG 58.805 47.826 12.94 12.94 41.47 4.17
619 628 3.843619 TCACCATCTACCTTGATTGGTGA 59.156 43.478 16.77 16.77 43.59 4.02
620 629 4.080919 TCACCATCTACCTTGATTGGTGAG 60.081 45.833 16.77 0.00 42.49 3.51
621 630 4.080919 CACCATCTACCTTGATTGGTGAGA 60.081 45.833 13.72 0.00 41.99 3.27
622 631 4.723789 ACCATCTACCTTGATTGGTGAGAT 59.276 41.667 0.00 0.00 41.05 2.75
623 632 5.192522 ACCATCTACCTTGATTGGTGAGATT 59.807 40.000 0.00 0.00 41.05 2.40
624 633 6.125029 CCATCTACCTTGATTGGTGAGATTT 58.875 40.000 0.00 0.00 41.05 2.17
625 634 6.604795 CCATCTACCTTGATTGGTGAGATTTT 59.395 38.462 0.00 0.00 41.05 1.82
626 635 7.123247 CCATCTACCTTGATTGGTGAGATTTTT 59.877 37.037 0.00 0.00 41.05 1.94
627 636 7.452880 TCTACCTTGATTGGTGAGATTTTTG 57.547 36.000 0.00 0.00 41.05 2.44
628 637 7.230747 TCTACCTTGATTGGTGAGATTTTTGA 58.769 34.615 0.00 0.00 41.05 2.69
629 638 6.729690 ACCTTGATTGGTGAGATTTTTGAA 57.270 33.333 0.00 0.00 39.17 2.69
630 639 7.307131 ACCTTGATTGGTGAGATTTTTGAAT 57.693 32.000 0.00 0.00 39.17 2.57
631 640 7.738847 ACCTTGATTGGTGAGATTTTTGAATT 58.261 30.769 0.00 0.00 39.17 2.17
632 641 7.658575 ACCTTGATTGGTGAGATTTTTGAATTG 59.341 33.333 0.00 0.00 39.17 2.32
633 642 7.874016 CCTTGATTGGTGAGATTTTTGAATTGA 59.126 33.333 0.00 0.00 0.00 2.57
634 643 8.821147 TTGATTGGTGAGATTTTTGAATTGAG 57.179 30.769 0.00 0.00 0.00 3.02
635 644 7.954835 TGATTGGTGAGATTTTTGAATTGAGT 58.045 30.769 0.00 0.00 0.00 3.41
636 645 8.084073 TGATTGGTGAGATTTTTGAATTGAGTC 58.916 33.333 0.00 0.00 0.00 3.36
637 646 7.587037 TTGGTGAGATTTTTGAATTGAGTCT 57.413 32.000 0.00 0.00 0.00 3.24
638 647 7.587037 TGGTGAGATTTTTGAATTGAGTCTT 57.413 32.000 0.00 0.00 0.00 3.01
639 648 8.690203 TGGTGAGATTTTTGAATTGAGTCTTA 57.310 30.769 0.00 0.00 0.00 2.10
640 649 9.300681 TGGTGAGATTTTTGAATTGAGTCTTAT 57.699 29.630 0.00 0.00 0.00 1.73
647 656 9.855021 ATTTTTGAATTGAGTCTTATAAACCGG 57.145 29.630 0.00 0.00 0.00 5.28
648 657 8.624367 TTTTGAATTGAGTCTTATAAACCGGA 57.376 30.769 9.46 0.00 0.00 5.14
649 658 8.624367 TTTGAATTGAGTCTTATAAACCGGAA 57.376 30.769 9.46 0.00 0.00 4.30
650 659 8.624367 TTGAATTGAGTCTTATAAACCGGAAA 57.376 30.769 9.46 0.00 0.00 3.13
651 660 8.263940 TGAATTGAGTCTTATAAACCGGAAAG 57.736 34.615 9.46 3.68 0.00 2.62
653 662 6.363167 TTGAGTCTTATAAACCGGAAAGGA 57.637 37.500 9.46 0.00 45.00 3.36
654 663 5.974108 TGAGTCTTATAAACCGGAAAGGAG 58.026 41.667 9.46 0.00 45.00 3.69
655 664 5.105064 TGAGTCTTATAAACCGGAAAGGAGG 60.105 44.000 9.46 0.00 45.00 4.30
656 665 4.163649 AGTCTTATAAACCGGAAAGGAGGG 59.836 45.833 9.46 0.00 45.00 4.30
657 666 4.162888 GTCTTATAAACCGGAAAGGAGGGA 59.837 45.833 9.46 0.00 45.00 4.20
658 667 4.407945 TCTTATAAACCGGAAAGGAGGGAG 59.592 45.833 9.46 0.00 45.00 4.30
669 678 4.141824 GGAAAGGAGGGAGTAGTTGATCAG 60.142 50.000 0.00 0.00 0.00 2.90
730 740 1.068741 ACCGTTCCTCTGTGTTCACTC 59.931 52.381 4.59 0.00 0.00 3.51
785 803 1.809207 CCGGCTTACAAATGGCCTG 59.191 57.895 3.32 0.00 43.29 4.85
801 819 2.485479 GGCCTGAACGACATGTCCATAT 60.485 50.000 20.03 3.76 0.00 1.78
853 875 2.297597 CCCGGGCATGTTTCTTTTTGTA 59.702 45.455 8.08 0.00 0.00 2.41
875 900 3.562973 AGCATGCATCTTATCGACTTTGG 59.437 43.478 21.98 0.00 0.00 3.28
893 3296 0.250381 GGCTCTCTCATCATGCCCAG 60.250 60.000 0.00 0.00 37.81 4.45
923 3327 3.483255 AGGAAAGGACTAAGCCTCTCT 57.517 47.619 0.00 0.00 37.26 3.10
947 3353 1.672356 ATCACCACCGCAAGCAGAC 60.672 57.895 0.00 0.00 0.00 3.51
986 3393 1.215647 CTTCCTTAGCGTCGGCAGT 59.784 57.895 0.00 0.00 43.41 4.40
1045 3455 4.193334 TGATCGCGTCCCTGCTCG 62.193 66.667 5.77 0.00 0.00 5.03
1046 3456 4.194720 GATCGCGTCCCTGCTCGT 62.195 66.667 5.77 0.00 0.00 4.18
1047 3457 4.498520 ATCGCGTCCCTGCTCGTG 62.499 66.667 5.77 0.00 38.63 4.35
1137 3562 0.729116 CCATGTCAACCGATCAGCAC 59.271 55.000 0.00 0.00 0.00 4.40
1239 3694 1.603802 CTGACGTGCAACAAGGTGAAT 59.396 47.619 0.00 0.00 35.74 2.57
1419 3907 7.056006 TGTATGTAGTACGAATAAGGAGGTGA 58.944 38.462 0.00 0.00 36.01 4.02
1477 3966 0.843309 TTCCTGCCAGACCTTGTTGA 59.157 50.000 0.00 0.00 0.00 3.18
1509 3998 4.458989 GGCTTCAGTTCACCATTTGATACA 59.541 41.667 0.00 0.00 32.84 2.29
1527 4016 9.961265 TTTGATACAGAAATACTACATACTCCG 57.039 33.333 0.00 0.00 0.00 4.63
1529 4018 8.565416 TGATACAGAAATACTACATACTCCGTG 58.435 37.037 0.00 0.00 0.00 4.94
1530 4019 6.770746 ACAGAAATACTACATACTCCGTGT 57.229 37.500 0.00 0.00 0.00 4.49
1551 4047 7.064253 CCGTGTGTTCCTAAATAGACCTTTTAG 59.936 40.741 0.00 0.00 36.73 1.85
1555 4051 9.368674 GTGTTCCTAAATAGACCTTTTAGAGAC 57.631 37.037 5.07 4.36 38.40 3.36
1580 4088 8.965172 ACTTTAATATAGACTACGCAACATTCG 58.035 33.333 0.00 0.00 0.00 3.34
1664 4173 9.981460 ATTTAGAAATGAATGGAGTAGTTTCCT 57.019 29.630 0.00 0.00 38.12 3.36
1668 4177 8.826765 AGAAATGAATGGAGTAGTTTCCTAAGA 58.173 33.333 0.00 0.00 38.12 2.10
1675 4184 5.721960 TGGAGTAGTTTCCTAAGAGCATCTT 59.278 40.000 0.00 0.00 45.73 2.40
1698 4207 3.582148 CGGACCTTTAAACCGCCC 58.418 61.111 3.15 0.00 40.19 6.13
1704 4213 1.520600 CCTTTAAACCGCCCGCAACT 61.521 55.000 0.00 0.00 0.00 3.16
1713 4222 1.003262 CGCCCGCAACTGTTCAAATG 61.003 55.000 0.00 0.00 0.00 2.32
1714 4223 0.031994 GCCCGCAACTGTTCAAATGT 59.968 50.000 0.00 0.00 0.00 2.71
1716 4225 1.066908 CCCGCAACTGTTCAAATGTGT 59.933 47.619 0.00 0.00 0.00 3.72
1726 4235 5.647225 ACTGTTCAAATGTGTTTTTGCCATT 59.353 32.000 0.00 0.00 36.69 3.16
1736 4268 4.985409 GTGTTTTTGCCATTCAAATCGGTA 59.015 37.500 0.00 0.00 43.53 4.02
1752 4284 1.505425 GGTACGGACGCACTTTTTCT 58.495 50.000 0.00 0.00 0.00 2.52
1753 4285 1.869132 GGTACGGACGCACTTTTTCTT 59.131 47.619 0.00 0.00 0.00 2.52
1759 4291 4.035909 ACGGACGCACTTTTTCTTGTAAAT 59.964 37.500 0.00 0.00 0.00 1.40
1760 4292 5.236911 ACGGACGCACTTTTTCTTGTAAATA 59.763 36.000 0.00 0.00 0.00 1.40
2172 4704 4.323477 ACTGCCACGCCCGCTTTA 62.323 61.111 0.00 0.00 0.00 1.85
2173 4705 3.499737 CTGCCACGCCCGCTTTAG 61.500 66.667 0.00 0.00 0.00 1.85
2221 4754 1.074248 GCCTCTCCCGGGTTTTTCA 59.926 57.895 22.86 0.00 0.00 2.69
2228 4761 0.524414 CCCGGGTTTTTCATCGAACC 59.476 55.000 14.18 0.00 43.61 3.62
2232 4765 1.623163 GGTTTTTCATCGAACCCCCA 58.377 50.000 0.00 0.00 39.49 4.96
2234 4767 1.068816 GTTTTTCATCGAACCCCCACG 60.069 52.381 0.00 0.00 0.00 4.94
2310 4855 0.038166 ACCAAACATGAGGGCGACAT 59.962 50.000 0.00 0.00 0.00 3.06
2314 4859 2.424601 CAAACATGAGGGCGACATTGAT 59.575 45.455 0.00 0.00 0.00 2.57
2317 4862 0.179009 ATGAGGGCGACATTGATGGG 60.179 55.000 0.00 0.00 0.00 4.00
2322 4867 2.889988 CGACATTGATGGGCGCGA 60.890 61.111 12.10 0.00 0.00 5.87
2328 4873 2.650813 ATTGATGGGCGCGACCTCTC 62.651 60.000 34.65 27.62 39.10 3.20
2329 4874 4.933064 GATGGGCGCGACCTCTCG 62.933 72.222 34.65 0.00 43.28 4.04
2337 4882 3.082579 GCGACCTCTCGGGCTTCAT 62.083 63.158 0.00 0.00 40.53 2.57
2367 4912 0.391661 GGACGCTGCATCCTGAGAAA 60.392 55.000 7.63 0.00 33.03 2.52
2369 4914 1.596727 GACGCTGCATCCTGAGAAATC 59.403 52.381 0.00 0.00 0.00 2.17
2372 4917 2.223203 CGCTGCATCCTGAGAAATCAAC 60.223 50.000 0.00 0.00 0.00 3.18
2381 4926 0.391263 GAGAAATCAACTCCGGCCGT 60.391 55.000 26.12 1.61 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.412460 TCTATTCCTATGAAACAAATGCTCAAT 57.588 29.630 0.00 0.00 33.32 2.57
20 21 8.814038 AGCACTTCTATTCCTATGAAACAAAT 57.186 30.769 0.00 0.00 33.32 2.32
23 24 8.306313 TCTAGCACTTCTATTCCTATGAAACA 57.694 34.615 0.00 0.00 33.32 2.83
36 37 9.830186 ATAATCCTTAGGAATCTAGCACTTCTA 57.170 33.333 4.56 0.00 34.34 2.10
44 45 6.627087 TGGGCATAATCCTTAGGAATCTAG 57.373 41.667 4.56 0.00 34.34 2.43
59 60 5.555542 AGGGATTAGGTCAATATGGGCATAA 59.444 40.000 0.00 0.00 0.00 1.90
64 65 5.790618 TCCTTAGGGATTAGGTCAATATGGG 59.209 44.000 0.00 0.00 36.57 4.00
91 92 6.481643 AGAATCCTCGGGAATTCAGTTAAAA 58.518 36.000 7.93 0.00 34.34 1.52
92 93 6.062258 AGAATCCTCGGGAATTCAGTTAAA 57.938 37.500 7.93 0.00 34.34 1.52
94 95 5.693769 AAGAATCCTCGGGAATTCAGTTA 57.306 39.130 7.93 0.00 34.34 2.24
95 96 4.576330 AAGAATCCTCGGGAATTCAGTT 57.424 40.909 7.93 0.00 34.34 3.16
96 97 4.717280 ACTAAGAATCCTCGGGAATTCAGT 59.283 41.667 7.93 0.00 34.34 3.41
97 98 5.283457 ACTAAGAATCCTCGGGAATTCAG 57.717 43.478 7.93 0.65 34.34 3.02
106 115 7.446013 AGTCTCACCTAATACTAAGAATCCTCG 59.554 40.741 0.00 0.00 0.00 4.63
155 164 9.550406 AAATGATTGAAATGTCATGTTCACTTT 57.450 25.926 8.87 0.00 35.38 2.66
233 242 8.840321 GCTCCATGTTTGATACAAGTACATATT 58.160 33.333 0.00 0.00 40.89 1.28
253 262 6.014242 TGAGGATTTTATCATCGTAGCTCCAT 60.014 38.462 0.00 0.00 42.63 3.41
260 269 5.545063 TGGCTGAGGATTTTATCATCGTA 57.455 39.130 0.00 0.00 42.63 3.43
295 304 3.911661 ACTAGTGTGAGTACAACCGTC 57.088 47.619 0.00 0.00 38.82 4.79
319 328 9.990868 AAGGAGGGAGTATTTGTTTTGTTATAT 57.009 29.630 0.00 0.00 0.00 0.86
320 329 9.816787 AAAGGAGGGAGTATTTGTTTTGTTATA 57.183 29.630 0.00 0.00 0.00 0.98
321 330 8.721133 AAAGGAGGGAGTATTTGTTTTGTTAT 57.279 30.769 0.00 0.00 0.00 1.89
334 343 5.364735 CCTATAAACCGAAAAGGAGGGAGTA 59.635 44.000 0.00 0.00 45.00 2.59
335 344 4.163649 CCTATAAACCGAAAAGGAGGGAGT 59.836 45.833 0.00 0.00 45.00 3.85
336 345 4.444449 CCCTATAAACCGAAAAGGAGGGAG 60.444 50.000 0.00 0.00 46.86 4.30
337 346 3.457012 CCCTATAAACCGAAAAGGAGGGA 59.543 47.826 0.00 0.00 46.86 4.20
338 347 3.816994 CCCTATAAACCGAAAAGGAGGG 58.183 50.000 0.00 0.00 45.00 4.30
339 348 3.118000 AGCCCTATAAACCGAAAAGGAGG 60.118 47.826 0.00 0.00 45.00 4.30
340 349 4.152284 AGCCCTATAAACCGAAAAGGAG 57.848 45.455 0.00 0.00 45.00 3.69
341 350 4.579647 AAGCCCTATAAACCGAAAAGGA 57.420 40.909 0.00 0.00 45.00 3.36
343 352 7.803279 AAGATAAGCCCTATAAACCGAAAAG 57.197 36.000 0.00 0.00 0.00 2.27
344 353 9.683870 TTTAAGATAAGCCCTATAAACCGAAAA 57.316 29.630 0.00 0.00 0.00 2.29
345 354 9.683870 TTTTAAGATAAGCCCTATAAACCGAAA 57.316 29.630 0.00 0.00 0.00 3.46
346 355 9.856162 ATTTTAAGATAAGCCCTATAAACCGAA 57.144 29.630 0.00 0.00 0.00 4.30
347 356 9.856162 AATTTTAAGATAAGCCCTATAAACCGA 57.144 29.630 0.00 0.00 0.00 4.69
379 388 9.447157 CCAAATTGAGCCTTATAAAATGGAAAA 57.553 29.630 0.00 0.00 0.00 2.29
380 389 8.601546 ACCAAATTGAGCCTTATAAAATGGAAA 58.398 29.630 0.00 0.00 0.00 3.13
381 390 8.144862 ACCAAATTGAGCCTTATAAAATGGAA 57.855 30.769 0.00 0.00 0.00 3.53
382 391 7.732222 ACCAAATTGAGCCTTATAAAATGGA 57.268 32.000 0.00 0.00 0.00 3.41
383 392 7.823799 ACAACCAAATTGAGCCTTATAAAATGG 59.176 33.333 0.00 0.00 41.23 3.16
384 393 8.776376 ACAACCAAATTGAGCCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
385 394 9.791801 AAACAACCAAATTGAGCCTTATAAAAT 57.208 25.926 0.00 0.00 41.23 1.82
386 395 9.267084 GAAACAACCAAATTGAGCCTTATAAAA 57.733 29.630 0.00 0.00 41.23 1.52
387 396 7.875554 GGAAACAACCAAATTGAGCCTTATAAA 59.124 33.333 0.00 0.00 41.23 1.40
388 397 7.382898 GGAAACAACCAAATTGAGCCTTATAA 58.617 34.615 0.00 0.00 41.23 0.98
389 398 6.071051 GGGAAACAACCAAATTGAGCCTTATA 60.071 38.462 0.00 0.00 41.23 0.98
390 399 5.279960 GGGAAACAACCAAATTGAGCCTTAT 60.280 40.000 0.00 0.00 41.23 1.73
391 400 4.039852 GGGAAACAACCAAATTGAGCCTTA 59.960 41.667 0.00 0.00 41.23 2.69
392 401 3.181455 GGGAAACAACCAAATTGAGCCTT 60.181 43.478 0.00 0.00 41.23 4.35
393 402 2.368548 GGGAAACAACCAAATTGAGCCT 59.631 45.455 0.00 0.00 41.23 4.58
394 403 2.103941 TGGGAAACAACCAAATTGAGCC 59.896 45.455 0.00 0.00 41.23 4.70
395 404 3.467374 TGGGAAACAACCAAATTGAGC 57.533 42.857 0.00 0.00 41.23 4.26
396 405 4.990426 GTGATGGGAAACAACCAAATTGAG 59.010 41.667 0.00 0.00 42.17 3.02
397 406 4.406972 TGTGATGGGAAACAACCAAATTGA 59.593 37.500 0.00 0.00 42.17 2.57
398 407 4.701765 TGTGATGGGAAACAACCAAATTG 58.298 39.130 0.00 0.00 42.17 2.32
399 408 5.163216 ACATGTGATGGGAAACAACCAAATT 60.163 36.000 0.00 0.00 42.17 1.82
400 409 4.347583 ACATGTGATGGGAAACAACCAAAT 59.652 37.500 0.00 0.00 42.17 2.32
401 410 3.708631 ACATGTGATGGGAAACAACCAAA 59.291 39.130 0.00 0.00 42.17 3.28
402 411 3.303938 ACATGTGATGGGAAACAACCAA 58.696 40.909 0.00 0.00 42.17 3.67
403 412 2.956132 ACATGTGATGGGAAACAACCA 58.044 42.857 0.00 0.00 43.22 3.67
404 413 3.320541 TGAACATGTGATGGGAAACAACC 59.679 43.478 0.00 0.00 33.60 3.77
405 414 4.278170 TCTGAACATGTGATGGGAAACAAC 59.722 41.667 0.00 0.00 33.60 3.32
406 415 4.468713 TCTGAACATGTGATGGGAAACAA 58.531 39.130 0.00 0.00 33.60 2.83
407 416 4.097551 TCTGAACATGTGATGGGAAACA 57.902 40.909 0.00 0.00 33.60 2.83
408 417 5.393461 GGAATCTGAACATGTGATGGGAAAC 60.393 44.000 0.00 0.00 33.60 2.78
409 418 4.706476 GGAATCTGAACATGTGATGGGAAA 59.294 41.667 0.00 0.00 33.60 3.13
410 419 4.263860 TGGAATCTGAACATGTGATGGGAA 60.264 41.667 0.00 0.00 33.60 3.97
411 420 3.266513 TGGAATCTGAACATGTGATGGGA 59.733 43.478 0.00 0.00 33.60 4.37
412 421 3.623703 TGGAATCTGAACATGTGATGGG 58.376 45.455 0.00 0.00 33.60 4.00
413 422 4.097437 CCTTGGAATCTGAACATGTGATGG 59.903 45.833 0.00 0.00 33.60 3.51
414 423 4.703575 ACCTTGGAATCTGAACATGTGATG 59.296 41.667 0.00 0.00 0.00 3.07
415 424 4.703575 CACCTTGGAATCTGAACATGTGAT 59.296 41.667 0.00 0.00 0.00 3.06
416 425 4.074259 CACCTTGGAATCTGAACATGTGA 58.926 43.478 0.00 0.00 0.00 3.58
417 426 3.366679 GCACCTTGGAATCTGAACATGTG 60.367 47.826 0.00 0.00 0.00 3.21
418 427 2.821969 GCACCTTGGAATCTGAACATGT 59.178 45.455 0.00 0.00 0.00 3.21
419 428 2.821378 TGCACCTTGGAATCTGAACATG 59.179 45.455 0.00 0.00 0.00 3.21
420 429 3.159213 TGCACCTTGGAATCTGAACAT 57.841 42.857 0.00 0.00 0.00 2.71
421 430 2.655090 TGCACCTTGGAATCTGAACA 57.345 45.000 0.00 0.00 0.00 3.18
422 431 5.643379 TTAATGCACCTTGGAATCTGAAC 57.357 39.130 0.00 0.00 0.00 3.18
423 432 5.047377 GGTTTAATGCACCTTGGAATCTGAA 60.047 40.000 0.00 0.00 0.00 3.02
424 433 4.462483 GGTTTAATGCACCTTGGAATCTGA 59.538 41.667 0.00 0.00 0.00 3.27
425 434 4.220382 TGGTTTAATGCACCTTGGAATCTG 59.780 41.667 0.00 0.00 35.07 2.90
426 435 4.415596 TGGTTTAATGCACCTTGGAATCT 58.584 39.130 0.00 0.00 35.07 2.40
427 436 4.799564 TGGTTTAATGCACCTTGGAATC 57.200 40.909 0.00 0.00 35.07 2.52
428 437 5.490159 CAATGGTTTAATGCACCTTGGAAT 58.510 37.500 0.00 0.00 35.07 3.01
429 438 4.802248 GCAATGGTTTAATGCACCTTGGAA 60.802 41.667 0.00 0.00 39.81 3.53
430 439 3.306641 GCAATGGTTTAATGCACCTTGGA 60.307 43.478 0.00 0.00 39.81 3.53
431 440 3.002102 GCAATGGTTTAATGCACCTTGG 58.998 45.455 0.00 0.00 39.81 3.61
432 441 3.661944 TGCAATGGTTTAATGCACCTTG 58.338 40.909 0.00 1.23 44.52 3.61
438 447 3.685756 ACTTGCATGCAATGGTTTAATGC 59.314 39.130 31.96 0.00 46.86 3.56
439 448 7.542534 AATACTTGCATGCAATGGTTTAATG 57.457 32.000 31.96 19.17 46.86 1.90
440 449 9.316730 CTTAATACTTGCATGCAATGGTTTAAT 57.683 29.630 31.96 15.23 46.86 1.40
441 450 8.526978 TCTTAATACTTGCATGCAATGGTTTAA 58.473 29.630 31.96 25.97 46.86 1.52
442 451 8.060931 TCTTAATACTTGCATGCAATGGTTTA 57.939 30.769 31.96 21.98 46.86 2.01
443 452 6.934056 TCTTAATACTTGCATGCAATGGTTT 58.066 32.000 31.96 22.86 46.86 3.27
444 453 6.377996 TCTCTTAATACTTGCATGCAATGGTT 59.622 34.615 31.96 25.12 46.86 3.67
445 454 5.887598 TCTCTTAATACTTGCATGCAATGGT 59.112 36.000 31.96 27.26 46.86 3.55
446 455 6.381481 TCTCTTAATACTTGCATGCAATGG 57.619 37.500 31.96 23.32 46.86 3.16
448 457 9.880157 AATTTTCTCTTAATACTTGCATGCAAT 57.120 25.926 31.96 22.79 35.20 3.56
449 458 9.142515 CAATTTTCTCTTAATACTTGCATGCAA 57.857 29.630 30.12 30.12 0.00 4.08
450 459 8.522003 TCAATTTTCTCTTAATACTTGCATGCA 58.478 29.630 18.46 18.46 0.00 3.96
451 460 8.801913 GTCAATTTTCTCTTAATACTTGCATGC 58.198 33.333 11.82 11.82 0.00 4.06
452 461 9.294030 GGTCAATTTTCTCTTAATACTTGCATG 57.706 33.333 0.00 0.00 0.00 4.06
453 462 9.023962 TGGTCAATTTTCTCTTAATACTTGCAT 57.976 29.630 0.00 0.00 0.00 3.96
454 463 8.402798 TGGTCAATTTTCTCTTAATACTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
455 464 9.860898 ATTGGTCAATTTTCTCTTAATACTTGC 57.139 29.630 0.00 0.00 0.00 4.01
457 466 9.860898 GCATTGGTCAATTTTCTCTTAATACTT 57.139 29.630 0.00 0.00 0.00 2.24
458 467 9.023962 TGCATTGGTCAATTTTCTCTTAATACT 57.976 29.630 0.00 0.00 0.00 2.12
459 468 9.807649 ATGCATTGGTCAATTTTCTCTTAATAC 57.192 29.630 0.00 0.00 0.00 1.89
460 469 9.806203 CATGCATTGGTCAATTTTCTCTTAATA 57.194 29.630 0.00 0.00 0.00 0.98
461 470 8.316214 ACATGCATTGGTCAATTTTCTCTTAAT 58.684 29.630 0.00 0.00 0.00 1.40
462 471 7.669427 ACATGCATTGGTCAATTTTCTCTTAA 58.331 30.769 0.00 0.00 0.00 1.85
463 472 7.230849 ACATGCATTGGTCAATTTTCTCTTA 57.769 32.000 0.00 0.00 0.00 2.10
464 473 6.105397 ACATGCATTGGTCAATTTTCTCTT 57.895 33.333 0.00 0.00 0.00 2.85
465 474 5.733620 ACATGCATTGGTCAATTTTCTCT 57.266 34.783 0.00 0.00 0.00 3.10
466 475 8.483307 AATTACATGCATTGGTCAATTTTCTC 57.517 30.769 0.00 0.00 0.00 2.87
467 476 8.851541 AAATTACATGCATTGGTCAATTTTCT 57.148 26.923 0.00 0.00 28.85 2.52
470 479 8.614346 GCATAAATTACATGCATTGGTCAATTT 58.386 29.630 16.27 7.43 46.47 1.82
471 480 8.145316 GCATAAATTACATGCATTGGTCAATT 57.855 30.769 16.27 0.00 46.47 2.32
472 481 7.718272 GCATAAATTACATGCATTGGTCAAT 57.282 32.000 16.27 0.00 46.47 2.57
508 517 9.683069 AAGTATGCTTACTAATGCATTAATTGC 57.317 29.630 19.32 18.75 46.29 3.56
534 543 9.612066 AATTAATGCTCTTGTTTTCCTCAAAAA 57.388 25.926 0.00 0.00 33.17 1.94
535 544 9.044150 CAATTAATGCTCTTGTTTTCCTCAAAA 57.956 29.630 0.00 0.00 0.00 2.44
536 545 7.656948 CCAATTAATGCTCTTGTTTTCCTCAAA 59.343 33.333 0.00 0.00 0.00 2.69
537 546 7.153985 CCAATTAATGCTCTTGTTTTCCTCAA 58.846 34.615 0.00 0.00 0.00 3.02
538 547 6.295236 CCCAATTAATGCTCTTGTTTTCCTCA 60.295 38.462 0.00 0.00 0.00 3.86
539 548 6.101997 CCCAATTAATGCTCTTGTTTTCCTC 58.898 40.000 0.00 0.00 0.00 3.71
540 549 5.543790 ACCCAATTAATGCTCTTGTTTTCCT 59.456 36.000 0.00 0.00 0.00 3.36
541 550 5.639082 CACCCAATTAATGCTCTTGTTTTCC 59.361 40.000 0.00 0.00 0.00 3.13
542 551 5.120674 GCACCCAATTAATGCTCTTGTTTTC 59.879 40.000 0.00 0.00 36.40 2.29
543 552 4.996758 GCACCCAATTAATGCTCTTGTTTT 59.003 37.500 0.00 0.00 36.40 2.43
544 553 4.284234 AGCACCCAATTAATGCTCTTGTTT 59.716 37.500 4.81 0.00 46.68 2.83
545 554 3.834231 AGCACCCAATTAATGCTCTTGTT 59.166 39.130 4.81 0.00 46.68 2.83
546 555 3.434309 AGCACCCAATTAATGCTCTTGT 58.566 40.909 4.81 0.00 46.68 3.16
552 561 6.426633 AGTTTACAAAAGCACCCAATTAATGC 59.573 34.615 0.00 0.60 39.74 3.56
553 562 7.117667 GGAGTTTACAAAAGCACCCAATTAATG 59.882 37.037 0.00 0.00 0.00 1.90
554 563 7.158697 GGAGTTTACAAAAGCACCCAATTAAT 58.841 34.615 0.00 0.00 0.00 1.40
555 564 6.098409 TGGAGTTTACAAAAGCACCCAATTAA 59.902 34.615 0.00 0.00 0.00 1.40
556 565 5.598830 TGGAGTTTACAAAAGCACCCAATTA 59.401 36.000 0.00 0.00 0.00 1.40
557 566 4.407296 TGGAGTTTACAAAAGCACCCAATT 59.593 37.500 0.00 0.00 0.00 2.32
558 567 3.964031 TGGAGTTTACAAAAGCACCCAAT 59.036 39.130 0.00 0.00 0.00 3.16
559 568 3.366396 TGGAGTTTACAAAAGCACCCAA 58.634 40.909 0.00 0.00 0.00 4.12
560 569 3.019799 TGGAGTTTACAAAAGCACCCA 57.980 42.857 0.00 0.00 0.00 4.51
561 570 4.394439 TTTGGAGTTTACAAAAGCACCC 57.606 40.909 0.00 0.00 35.11 4.61
567 576 8.198778 GTGGAATACCTTTTGGAGTTTACAAAA 58.801 33.333 0.00 0.00 43.30 2.44
568 577 7.201929 GGTGGAATACCTTTTGGAGTTTACAAA 60.202 37.037 0.00 0.00 46.51 2.83
569 578 6.265876 GGTGGAATACCTTTTGGAGTTTACAA 59.734 38.462 0.00 0.00 46.51 2.41
570 579 5.771165 GGTGGAATACCTTTTGGAGTTTACA 59.229 40.000 0.00 0.00 46.51 2.41
571 580 6.263516 GGTGGAATACCTTTTGGAGTTTAC 57.736 41.667 0.00 0.00 46.51 2.01
585 594 3.914426 AGATGGTGAGTGGTGGAATAC 57.086 47.619 0.00 0.00 0.00 1.89
586 595 3.709653 GGTAGATGGTGAGTGGTGGAATA 59.290 47.826 0.00 0.00 0.00 1.75
587 596 2.505819 GGTAGATGGTGAGTGGTGGAAT 59.494 50.000 0.00 0.00 0.00 3.01
588 597 1.906574 GGTAGATGGTGAGTGGTGGAA 59.093 52.381 0.00 0.00 0.00 3.53
589 598 1.078823 AGGTAGATGGTGAGTGGTGGA 59.921 52.381 0.00 0.00 0.00 4.02
590 599 1.573108 AGGTAGATGGTGAGTGGTGG 58.427 55.000 0.00 0.00 0.00 4.61
591 600 2.567169 TCAAGGTAGATGGTGAGTGGTG 59.433 50.000 0.00 0.00 0.00 4.17
592 601 2.902608 TCAAGGTAGATGGTGAGTGGT 58.097 47.619 0.00 0.00 0.00 4.16
593 602 4.194640 CAATCAAGGTAGATGGTGAGTGG 58.805 47.826 0.00 0.00 33.61 4.00
594 603 4.194640 CCAATCAAGGTAGATGGTGAGTG 58.805 47.826 0.00 0.00 36.21 3.51
595 604 3.846588 ACCAATCAAGGTAGATGGTGAGT 59.153 43.478 0.00 0.00 40.98 3.41
596 605 4.080919 TCACCAATCAAGGTAGATGGTGAG 60.081 45.833 19.00 0.00 43.33 3.51
597 606 3.843619 TCACCAATCAAGGTAGATGGTGA 59.156 43.478 19.00 19.00 44.47 4.02
598 607 4.080919 TCTCACCAATCAAGGTAGATGGTG 60.081 45.833 15.28 15.28 40.77 4.17
599 608 4.104086 TCTCACCAATCAAGGTAGATGGT 58.896 43.478 0.00 0.00 40.77 3.55
600 609 4.760530 TCTCACCAATCAAGGTAGATGG 57.239 45.455 0.00 0.00 40.77 3.51
601 610 7.636150 AAAATCTCACCAATCAAGGTAGATG 57.364 36.000 0.00 0.00 40.77 2.90
602 611 7.890127 TCAAAAATCTCACCAATCAAGGTAGAT 59.110 33.333 0.00 0.00 40.77 1.98
603 612 7.230747 TCAAAAATCTCACCAATCAAGGTAGA 58.769 34.615 0.00 0.00 40.77 2.59
604 613 7.452880 TCAAAAATCTCACCAATCAAGGTAG 57.547 36.000 0.00 0.00 40.77 3.18
605 614 7.831691 TTCAAAAATCTCACCAATCAAGGTA 57.168 32.000 0.00 0.00 40.77 3.08
606 615 6.729690 TTCAAAAATCTCACCAATCAAGGT 57.270 33.333 0.00 0.00 44.48 3.50
607 616 7.874016 TCAATTCAAAAATCTCACCAATCAAGG 59.126 33.333 0.00 0.00 0.00 3.61
608 617 8.821147 TCAATTCAAAAATCTCACCAATCAAG 57.179 30.769 0.00 0.00 0.00 3.02
609 618 8.423349 ACTCAATTCAAAAATCTCACCAATCAA 58.577 29.630 0.00 0.00 0.00 2.57
610 619 7.954835 ACTCAATTCAAAAATCTCACCAATCA 58.045 30.769 0.00 0.00 0.00 2.57
611 620 8.302438 AGACTCAATTCAAAAATCTCACCAATC 58.698 33.333 0.00 0.00 0.00 2.67
612 621 8.186709 AGACTCAATTCAAAAATCTCACCAAT 57.813 30.769 0.00 0.00 0.00 3.16
613 622 7.587037 AGACTCAATTCAAAAATCTCACCAA 57.413 32.000 0.00 0.00 0.00 3.67
614 623 7.587037 AAGACTCAATTCAAAAATCTCACCA 57.413 32.000 0.00 0.00 0.00 4.17
621 630 9.855021 CCGGTTTATAAGACTCAATTCAAAAAT 57.145 29.630 0.00 0.00 0.00 1.82
622 631 9.069082 TCCGGTTTATAAGACTCAATTCAAAAA 57.931 29.630 0.00 0.00 0.00 1.94
623 632 8.624367 TCCGGTTTATAAGACTCAATTCAAAA 57.376 30.769 0.00 0.00 0.00 2.44
624 633 8.624367 TTCCGGTTTATAAGACTCAATTCAAA 57.376 30.769 0.00 0.00 0.00 2.69
625 634 8.624367 TTTCCGGTTTATAAGACTCAATTCAA 57.376 30.769 0.00 0.00 0.00 2.69
626 635 7.335924 CCTTTCCGGTTTATAAGACTCAATTCA 59.664 37.037 0.00 0.00 0.00 2.57
627 636 7.551617 TCCTTTCCGGTTTATAAGACTCAATTC 59.448 37.037 0.00 0.00 0.00 2.17
628 637 7.399634 TCCTTTCCGGTTTATAAGACTCAATT 58.600 34.615 0.00 0.00 0.00 2.32
629 638 6.954232 TCCTTTCCGGTTTATAAGACTCAAT 58.046 36.000 0.00 0.00 0.00 2.57
630 639 6.363167 TCCTTTCCGGTTTATAAGACTCAA 57.637 37.500 0.00 0.00 0.00 3.02
631 640 5.105064 CCTCCTTTCCGGTTTATAAGACTCA 60.105 44.000 0.00 0.00 0.00 3.41
632 641 5.358090 CCTCCTTTCCGGTTTATAAGACTC 58.642 45.833 0.00 0.00 0.00 3.36
633 642 4.163649 CCCTCCTTTCCGGTTTATAAGACT 59.836 45.833 0.00 0.00 0.00 3.24
634 643 4.162888 TCCCTCCTTTCCGGTTTATAAGAC 59.837 45.833 0.00 0.00 0.00 3.01
635 644 4.364470 TCCCTCCTTTCCGGTTTATAAGA 58.636 43.478 0.00 0.00 0.00 2.10
636 645 4.163649 ACTCCCTCCTTTCCGGTTTATAAG 59.836 45.833 0.00 0.00 0.00 1.73
637 646 4.106324 ACTCCCTCCTTTCCGGTTTATAA 58.894 43.478 0.00 0.00 0.00 0.98
638 647 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
639 648 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
640 649 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
641 650 1.907255 CTACTCCCTCCTTTCCGGTTT 59.093 52.381 0.00 0.00 0.00 3.27
642 651 1.203275 ACTACTCCCTCCTTTCCGGTT 60.203 52.381 0.00 0.00 0.00 4.44
643 652 0.412640 ACTACTCCCTCCTTTCCGGT 59.587 55.000 0.00 0.00 0.00 5.28
644 653 1.207329 CAACTACTCCCTCCTTTCCGG 59.793 57.143 0.00 0.00 0.00 5.14
645 654 2.176889 TCAACTACTCCCTCCTTTCCG 58.823 52.381 0.00 0.00 0.00 4.30
646 655 3.775316 TGATCAACTACTCCCTCCTTTCC 59.225 47.826 0.00 0.00 0.00 3.13
647 656 4.141824 CCTGATCAACTACTCCCTCCTTTC 60.142 50.000 0.00 0.00 0.00 2.62
648 657 3.777522 CCTGATCAACTACTCCCTCCTTT 59.222 47.826 0.00 0.00 0.00 3.11
649 658 3.379452 CCTGATCAACTACTCCCTCCTT 58.621 50.000 0.00 0.00 0.00 3.36
650 659 2.957312 GCCTGATCAACTACTCCCTCCT 60.957 54.545 0.00 0.00 0.00 3.69
651 660 1.414550 GCCTGATCAACTACTCCCTCC 59.585 57.143 0.00 0.00 0.00 4.30
652 661 1.414550 GGCCTGATCAACTACTCCCTC 59.585 57.143 0.00 0.00 0.00 4.30
653 662 1.501582 GGCCTGATCAACTACTCCCT 58.498 55.000 0.00 0.00 0.00 4.20
654 663 0.105039 CGGCCTGATCAACTACTCCC 59.895 60.000 0.00 0.00 0.00 4.30
655 664 0.824759 ACGGCCTGATCAACTACTCC 59.175 55.000 0.00 0.00 0.00 3.85
656 665 5.449107 TTATACGGCCTGATCAACTACTC 57.551 43.478 0.00 0.00 0.00 2.59
657 666 4.262079 GCTTATACGGCCTGATCAACTACT 60.262 45.833 0.00 0.00 0.00 2.57
658 667 3.988517 GCTTATACGGCCTGATCAACTAC 59.011 47.826 0.00 0.00 0.00 2.73
669 678 1.200020 GATTGGCATGCTTATACGGCC 59.800 52.381 18.92 0.00 44.82 6.13
748 766 0.248866 GCCAGTGGTTCGTTTTGTGG 60.249 55.000 11.74 0.00 0.00 4.17
785 803 5.118664 CGTGGATAATATGGACATGTCGTTC 59.881 44.000 19.33 6.70 0.00 3.95
853 875 3.562973 CCAAAGTCGATAAGATGCATGCT 59.437 43.478 20.33 4.11 0.00 3.79
875 900 0.250381 CCTGGGCATGATGAGAGAGC 60.250 60.000 0.00 0.00 0.00 4.09
893 3296 6.039493 GGCTTAGTCCTTTCCTTTTTATAGCC 59.961 42.308 0.00 0.00 35.66 3.93
923 3327 0.392863 CTTGCGGTGGTGATGATGGA 60.393 55.000 0.00 0.00 0.00 3.41
947 3353 8.107729 AGGAAGGTTGAACTTTAGTTATTAGGG 58.892 37.037 0.00 0.00 38.56 3.53
1095 3520 2.552585 TACCTCGGCTAACGCTGTGC 62.553 60.000 0.00 0.00 43.19 4.57
1320 3775 7.987458 AGGAAGATCTTTTCGCAGTTGATATTA 59.013 33.333 9.87 0.00 0.00 0.98
1419 3907 3.362399 CTGGTGCGTGGAGAGCGAT 62.362 63.158 0.00 0.00 37.44 4.58
1477 3966 3.326747 GTGAACTGAAGCCGACATTACT 58.673 45.455 0.00 0.00 0.00 2.24
1519 4008 6.696148 GTCTATTTAGGAACACACGGAGTATG 59.304 42.308 0.00 0.00 42.87 2.39
1527 4016 9.152595 CTCTAAAAGGTCTATTTAGGAACACAC 57.847 37.037 6.28 0.00 39.64 3.82
1529 4018 9.368674 GTCTCTAAAAGGTCTATTTAGGAACAC 57.631 37.037 6.28 0.00 39.64 3.32
1530 4019 9.322769 AGTCTCTAAAAGGTCTATTTAGGAACA 57.677 33.333 6.28 0.00 39.64 3.18
1551 4047 9.680315 ATGTTGCGTAGTCTATATTAAAGTCTC 57.320 33.333 0.00 0.00 0.00 3.36
1555 4051 9.177304 TCGAATGTTGCGTAGTCTATATTAAAG 57.823 33.333 0.00 0.00 0.00 1.85
1558 4054 9.518906 TTTTCGAATGTTGCGTAGTCTATATTA 57.481 29.630 0.00 0.00 0.00 0.98
1567 4063 6.705782 AGACATATTTTCGAATGTTGCGTAG 58.294 36.000 0.00 0.00 36.48 3.51
1568 4064 6.656314 AGACATATTTTCGAATGTTGCGTA 57.344 33.333 0.00 0.00 36.48 4.42
1569 4065 5.545658 AGACATATTTTCGAATGTTGCGT 57.454 34.783 0.00 0.00 36.48 5.24
1597 4105 6.947644 TTCAATACAGACTACATACGGCTA 57.052 37.500 0.00 0.00 0.00 3.93
1599 4107 6.924060 AGATTTCAATACAGACTACATACGGC 59.076 38.462 0.00 0.00 0.00 5.68
1649 4158 6.385467 AGATGCTCTTAGGAAACTACTCCATT 59.615 38.462 0.00 0.00 44.30 3.16
1651 4160 5.273208 AGATGCTCTTAGGAAACTACTCCA 58.727 41.667 0.00 0.00 44.30 3.86
1658 4167 3.619038 CGGTGAAGATGCTCTTAGGAAAC 59.381 47.826 0.00 0.00 36.73 2.78
1659 4168 3.861840 CGGTGAAGATGCTCTTAGGAAA 58.138 45.455 0.00 0.00 36.73 3.13
1660 4169 2.418746 GCGGTGAAGATGCTCTTAGGAA 60.419 50.000 0.00 0.00 36.73 3.36
1661 4170 1.137086 GCGGTGAAGATGCTCTTAGGA 59.863 52.381 0.00 0.00 36.73 2.94
1662 4171 1.576356 GCGGTGAAGATGCTCTTAGG 58.424 55.000 0.00 0.00 36.73 2.69
1663 4172 1.203928 CGCGGTGAAGATGCTCTTAG 58.796 55.000 0.00 0.00 36.73 2.18
1664 4173 0.179111 CCGCGGTGAAGATGCTCTTA 60.179 55.000 19.50 0.00 36.73 2.10
1665 4174 1.448540 CCGCGGTGAAGATGCTCTT 60.449 57.895 19.50 0.00 39.87 2.85
1666 4175 2.185350 CCGCGGTGAAGATGCTCT 59.815 61.111 19.50 0.00 0.00 4.09
1667 4176 2.167861 GTCCGCGGTGAAGATGCTC 61.168 63.158 27.15 0.48 0.00 4.26
1668 4177 2.125512 GTCCGCGGTGAAGATGCT 60.126 61.111 27.15 0.00 0.00 3.79
1675 4184 0.603439 GGTTTAAAGGTCCGCGGTGA 60.603 55.000 27.15 2.93 0.00 4.02
1678 4187 3.171056 CGGTTTAAAGGTCCGCGG 58.829 61.111 22.12 22.12 37.90 6.46
1698 4207 4.838665 AAAACACATTTGAACAGTTGCG 57.161 36.364 0.00 0.00 0.00 4.85
1704 4213 5.645067 TGAATGGCAAAAACACATTTGAACA 59.355 32.000 4.09 2.85 41.73 3.18
1726 4235 0.733566 GTGCGTCCGTACCGATTTGA 60.734 55.000 0.00 0.00 0.00 2.69
1736 4268 1.375551 ACAAGAAAAAGTGCGTCCGT 58.624 45.000 0.00 0.00 0.00 4.69
2155 4687 4.323477 TAAAGCGGGCGTGGCAGT 62.323 61.111 0.00 0.00 0.00 4.40
2157 4689 4.010224 TCTAAAGCGGGCGTGGCA 62.010 61.111 0.00 0.00 0.00 4.92
2161 4693 2.126189 GTCGTCTAAAGCGGGCGT 60.126 61.111 0.00 0.00 0.00 5.68
2162 4694 2.884207 GGTCGTCTAAAGCGGGCG 60.884 66.667 0.00 0.00 0.00 6.13
2171 4703 4.409218 GTGCGCCACGGTCGTCTA 62.409 66.667 4.18 0.00 0.00 2.59
2228 4761 3.891400 CATGAATGCGGCGTGGGG 61.891 66.667 9.37 0.00 0.00 4.96
2284 4829 1.739466 CCCTCATGTTTGGTCACATCG 59.261 52.381 0.00 0.00 35.03 3.84
2295 4840 2.019249 CATCAATGTCGCCCTCATGTT 58.981 47.619 0.00 0.00 0.00 2.71
2310 4855 3.371097 GAGAGGTCGCGCCCATCAA 62.371 63.158 9.68 0.00 38.26 2.57
2333 4878 1.570813 CGTCCGCATAGAAGCATGAA 58.429 50.000 0.00 0.00 0.00 2.57
2337 4882 1.519234 CAGCGTCCGCATAGAAGCA 60.519 57.895 14.70 0.00 42.80 3.91
2361 4906 0.391130 CGGCCGGAGTTGATTTCTCA 60.391 55.000 20.10 0.00 34.04 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.