Multiple sequence alignment - TraesCS3B01G350200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G350200 chr3B 100.000 6371 0 0 1 6371 560422463 560428833 0.000000e+00 11766.0
1 TraesCS3B01G350200 chr3D 93.344 5995 209 78 1 5854 428511813 428517758 0.000000e+00 8685.0
2 TraesCS3B01G350200 chr3A 93.832 4053 135 42 1847 5826 557020164 557016154 0.000000e+00 5993.0
3 TraesCS3B01G350200 chr3A 89.506 1801 94 48 77 1806 557021937 557020161 0.000000e+00 2191.0
4 TraesCS3B01G350200 chr3A 91.304 92 5 2 6142 6231 557015731 557015641 8.670000e-24 122.0
5 TraesCS3B01G350200 chr5D 93.478 46 1 2 6282 6327 451487539 451487582 4.120000e-07 67.6
6 TraesCS3B01G350200 chr5D 100.000 28 0 0 6321 6348 451487568 451487595 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G350200 chr3B 560422463 560428833 6370 False 11766.000000 11766 100.000000 1 6371 1 chr3B.!!$F1 6370
1 TraesCS3B01G350200 chr3D 428511813 428517758 5945 False 8685.000000 8685 93.344000 1 5854 1 chr3D.!!$F1 5853
2 TraesCS3B01G350200 chr3A 557015641 557021937 6296 True 2768.666667 5993 91.547333 77 6231 3 chr3A.!!$R1 6154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 563 0.032615 TTGTGTCCCAAGCCAAACCT 60.033 50.000 0.00 0.0 0.00 3.50 F
705 746 0.103208 GATTCGCACCCGTGAGATCT 59.897 55.000 0.00 0.0 39.08 2.75 F
1126 1200 0.196118 TCTCCTTTCCCCCTCACCTT 59.804 55.000 0.00 0.0 0.00 3.50 F
1162 1236 1.089481 TGATCCATTGCTCGCGTTCC 61.089 55.000 5.77 0.0 0.00 3.62 F
1163 1237 2.094126 GATCCATTGCTCGCGTTCCG 62.094 60.000 5.77 0.0 38.61 4.30 F
2833 2946 2.105766 ACCTACCTGTGTTATCCGTCC 58.894 52.381 0.00 0.0 0.00 4.79 F
2840 2953 4.099573 ACCTGTGTTATCCGTCCTTAGATG 59.900 45.833 0.00 0.0 0.00 2.90 F
4738 4862 0.174162 GTTCCATGCATCAGGTTGCC 59.826 55.000 0.00 0.0 42.06 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1472 2.032030 AGGACAAAAGCGAAACGTCATG 60.032 45.455 0.00 0.00 0.00 3.07 R
1656 1758 2.093306 TATTGTCTGTGTTGGCCTCG 57.907 50.000 3.32 0.00 0.00 4.63 R
2976 3089 2.928116 GGGCATAGTTTGTCAGTACGAC 59.072 50.000 9.87 9.87 45.61 4.34 R
3693 3811 1.338107 ATCAGACACCTTCACGACCA 58.662 50.000 0.00 0.00 0.00 4.02 R
3844 3962 4.598022 TGATTTGTTATGGATGCAGACCA 58.402 39.130 15.98 15.98 41.83 4.02 R
4738 4862 0.741221 GGTAAGCTCCCTCTTGTGCG 60.741 60.000 0.00 0.00 0.00 5.34 R
5229 5378 1.404391 CCAGCATCCAATCAGTGCTTC 59.596 52.381 0.00 0.00 46.29 3.86 R
6090 6485 0.031585 TGACGACGACCTCCACAAAG 59.968 55.000 0.00 0.00 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.207089 TCCATGGATGACGAGGTTCAC 59.793 52.381 11.44 0.00 0.00 3.18
32 33 3.119137 TGGATGACGAGGTTCACTATGTG 60.119 47.826 0.00 0.00 34.45 3.21
34 35 1.067142 TGACGAGGTTCACTATGTGGC 60.067 52.381 0.00 0.00 33.87 5.01
150 162 3.429547 CCACAAACAAATTGGTCCACGAA 60.430 43.478 0.00 0.00 43.66 3.85
363 387 0.560688 TTTCCCAAGACCCAAAGCCT 59.439 50.000 0.00 0.00 0.00 4.58
370 394 0.329596 AGACCCAAAGCCTAGGCAAG 59.670 55.000 34.70 22.34 44.88 4.01
440 479 1.303888 TACTCCGCCCGTCTGAACT 60.304 57.895 0.00 0.00 0.00 3.01
460 499 3.456277 ACTCTTGCCGAAAATATCTCCCT 59.544 43.478 0.00 0.00 0.00 4.20
487 526 3.470888 CTGTACCCTCCCTGCCCG 61.471 72.222 0.00 0.00 0.00 6.13
522 561 3.965780 CTTGTGTCCCAAGCCAAAC 57.034 52.632 0.00 0.00 43.84 2.93
524 563 0.032615 TTGTGTCCCAAGCCAAACCT 60.033 50.000 0.00 0.00 0.00 3.50
701 742 2.456119 GCAGATTCGCACCCGTGAG 61.456 63.158 0.00 0.00 35.54 3.51
705 746 0.103208 GATTCGCACCCGTGAGATCT 59.897 55.000 0.00 0.00 39.08 2.75
706 747 0.103208 ATTCGCACCCGTGAGATCTC 59.897 55.000 16.21 16.21 39.08 2.75
836 878 2.194201 CCATCGGTTGGTTACTTGGT 57.806 50.000 0.00 0.00 40.99 3.67
991 1045 4.794439 CGCAGATCGACGCCCACA 62.794 66.667 0.00 0.00 41.67 4.17
992 1046 2.887568 GCAGATCGACGCCCACAG 60.888 66.667 0.00 0.00 0.00 3.66
1122 1196 1.612442 CCGTCTCCTTTCCCCCTCA 60.612 63.158 0.00 0.00 0.00 3.86
1124 1198 1.900545 CGTCTCCTTTCCCCCTCACC 61.901 65.000 0.00 0.00 0.00 4.02
1125 1199 0.547954 GTCTCCTTTCCCCCTCACCT 60.548 60.000 0.00 0.00 0.00 4.00
1126 1200 0.196118 TCTCCTTTCCCCCTCACCTT 59.804 55.000 0.00 0.00 0.00 3.50
1128 1202 1.304464 CCTTTCCCCCTCACCTTGC 60.304 63.158 0.00 0.00 0.00 4.01
1129 1203 1.304464 CTTTCCCCCTCACCTTGCC 60.304 63.158 0.00 0.00 0.00 4.52
1157 1231 2.634982 TGTTTTGATCCATTGCTCGC 57.365 45.000 0.00 0.00 0.00 5.03
1162 1236 1.089481 TGATCCATTGCTCGCGTTCC 61.089 55.000 5.77 0.00 0.00 3.62
1163 1237 2.094126 GATCCATTGCTCGCGTTCCG 62.094 60.000 5.77 0.00 38.61 4.30
1165 1239 2.395690 CATTGCTCGCGTTCCGTC 59.604 61.111 5.77 0.00 38.35 4.79
1338 1426 5.351189 GCGGGCTGATTGATTTGTTTAATTT 59.649 36.000 0.00 0.00 0.00 1.82
1357 1445 3.804786 TTACGAATTGCTCCGGTGATA 57.195 42.857 7.92 0.00 0.00 2.15
1384 1472 5.235186 CAGCAACTCCATTACTGCACTATAC 59.765 44.000 0.00 0.00 37.26 1.47
1389 1477 6.516718 ACTCCATTACTGCACTATACATGAC 58.483 40.000 0.00 0.00 0.00 3.06
1402 1490 4.742438 ATACATGACGTTTCGCTTTTGT 57.258 36.364 0.00 0.00 0.00 2.83
1500 1599 2.604174 GCGTTGTGTTCGTGAGGGG 61.604 63.158 0.00 0.00 0.00 4.79
1508 1607 4.317488 TGTGTTCGTGAGGGGTTAATTAC 58.683 43.478 0.00 0.00 0.00 1.89
1570 1669 5.511888 CCTGAAATTTCAAGCTGGGTTCATT 60.512 40.000 20.82 0.00 36.64 2.57
1571 1670 6.295236 CCTGAAATTTCAAGCTGGGTTCATTA 60.295 38.462 20.82 0.00 36.64 1.90
1589 1688 6.844696 TCATTATAAGTCGTTCTTGGCATC 57.155 37.500 0.00 0.00 37.56 3.91
1623 1722 7.660208 TCTGTGATTTTGAAGTAGAAACCTACC 59.340 37.037 0.00 0.00 37.76 3.18
1704 1806 5.744171 TGCATGGTATATAAGGCGATCATT 58.256 37.500 0.00 0.00 0.00 2.57
1719 1821 7.378181 AGGCGATCATTTCTTTACATTTGTTT 58.622 30.769 0.00 0.00 0.00 2.83
1803 1905 5.897250 TGGATACAGTGAGGTAGCAGAATAA 59.103 40.000 0.00 0.00 46.17 1.40
1829 1931 9.840427 ATAAGATTTACCTGAAAACGTGATTTG 57.160 29.630 0.00 0.00 0.00 2.32
1831 1933 7.936584 AGATTTACCTGAAAACGTGATTTGAA 58.063 30.769 0.00 0.00 0.00 2.69
1833 1935 9.191995 GATTTACCTGAAAACGTGATTTGAATT 57.808 29.630 0.00 0.00 0.00 2.17
1942 2044 4.688879 TGTTGCACAATCTAGTTCGTAAGG 59.311 41.667 0.00 0.00 38.47 2.69
2034 2136 8.139989 TCTTTACCATAGTAAATTAGCTCCGTC 58.860 37.037 0.00 0.00 45.16 4.79
2833 2946 2.105766 ACCTACCTGTGTTATCCGTCC 58.894 52.381 0.00 0.00 0.00 4.79
2840 2953 4.099573 ACCTGTGTTATCCGTCCTTAGATG 59.900 45.833 0.00 0.00 0.00 2.90
2905 3018 6.403866 AAACCTTGATCAAATAACTGTGCA 57.596 33.333 9.88 0.00 0.00 4.57
2967 3080 7.643569 ATGCAATACACTCCAATTGACAATA 57.356 32.000 7.12 0.00 35.53 1.90
2976 3089 7.037438 CACTCCAATTGACAATATTTTCCCAG 58.963 38.462 7.12 0.00 0.00 4.45
3844 3962 5.700402 AGCAAGTTGGTCAGGTATATCTT 57.300 39.130 0.63 0.00 0.00 2.40
3873 3991 8.579006 TCTGCATCCATAACAAATCATATTTCC 58.421 33.333 0.00 0.00 0.00 3.13
4204 4324 6.042781 TCTCTTGAGGTGGAAAAGTTTAGCTA 59.957 38.462 0.00 0.00 0.00 3.32
4208 4328 6.362248 TGAGGTGGAAAAGTTTAGCTAGTTT 58.638 36.000 0.00 0.00 0.00 2.66
4212 4332 8.161425 AGGTGGAAAAGTTTAGCTAGTTTGATA 58.839 33.333 0.00 0.00 0.00 2.15
4214 4334 9.608617 GTGGAAAAGTTTAGCTAGTTTGATAAC 57.391 33.333 0.00 0.00 34.36 1.89
4298 4422 6.929049 TGCTATGCCAACTAGTATACATGTTC 59.071 38.462 2.30 0.00 0.00 3.18
4738 4862 0.174162 GTTCCATGCATCAGGTTGCC 59.826 55.000 0.00 0.00 42.06 4.52
4923 5047 8.858186 TGTGCAATGTCAATAAAATGTAAATCG 58.142 29.630 0.00 0.00 0.00 3.34
4971 5095 9.698309 CCAGTAAAGGTCTGTAGATATATGTTG 57.302 37.037 0.00 0.00 0.00 3.33
5114 5263 2.267324 GGTGGAGAGCAGACTGCC 59.733 66.667 23.74 14.87 46.52 4.85
5229 5378 2.951642 TGCTTTGTTCCTTCTCCACTTG 59.048 45.455 0.00 0.00 0.00 3.16
5456 5616 0.596082 CCTTCCGCACCATTCGTTTT 59.404 50.000 0.00 0.00 0.00 2.43
5524 5684 7.332182 AGGTTTTGTTCGCAAATTTTGTTCTTA 59.668 29.630 10.65 0.00 45.34 2.10
5531 5691 7.441890 TCGCAAATTTTGTTCTTACCAGATA 57.558 32.000 10.65 0.00 0.00 1.98
5532 5692 7.302524 TCGCAAATTTTGTTCTTACCAGATAC 58.697 34.615 10.65 0.00 0.00 2.24
5533 5693 7.174253 TCGCAAATTTTGTTCTTACCAGATACT 59.826 33.333 10.65 0.00 0.00 2.12
5534 5694 8.447833 CGCAAATTTTGTTCTTACCAGATACTA 58.552 33.333 10.65 0.00 0.00 1.82
5625 5786 5.103473 TCAGGTGTCCCTAGTAGAGATGATT 60.103 44.000 0.00 0.00 39.89 2.57
5632 5793 7.240828 TGTCCCTAGTAGAGATGATTAGAGGAT 59.759 40.741 0.00 0.00 0.00 3.24
5684 5848 4.835678 TGCTCTTCTTGCATGAGAATACA 58.164 39.130 0.00 0.00 35.27 2.29
5707 5871 7.283329 ACAAGTCTAGATTCCTCTTTGTTTGT 58.717 34.615 0.00 0.00 28.78 2.83
5708 5872 7.442666 ACAAGTCTAGATTCCTCTTTGTTTGTC 59.557 37.037 0.00 0.00 28.78 3.18
5725 5902 7.579589 TGTTTGTCTTGTGAAATGAAACTTG 57.420 32.000 0.00 0.00 0.00 3.16
5728 5905 4.709397 TGTCTTGTGAAATGAAACTTGGGT 59.291 37.500 0.00 0.00 0.00 4.51
5730 5907 3.980646 TGTGAAATGAAACTTGGGTCG 57.019 42.857 0.00 0.00 0.00 4.79
5764 5941 1.239347 GGAGCAATCGCCCTTATTCC 58.761 55.000 0.00 0.00 39.83 3.01
5765 5942 1.202818 GGAGCAATCGCCCTTATTCCT 60.203 52.381 0.00 0.00 39.83 3.36
5766 5943 2.147150 GAGCAATCGCCCTTATTCCTC 58.853 52.381 0.00 0.00 39.83 3.71
5767 5944 1.490490 AGCAATCGCCCTTATTCCTCA 59.510 47.619 0.00 0.00 39.83 3.86
5820 5998 3.126514 GCAGAGCATAATCAATCATCGGG 59.873 47.826 0.00 0.00 0.00 5.14
5859 6037 4.628333 ACAATACGACAACTAAATGACCGG 59.372 41.667 0.00 0.00 0.00 5.28
5861 6039 2.409975 ACGACAACTAAATGACCGGTG 58.590 47.619 14.63 0.00 0.00 4.94
5862 6040 1.730064 CGACAACTAAATGACCGGTGG 59.270 52.381 14.63 0.00 0.00 4.61
5863 6041 2.610976 CGACAACTAAATGACCGGTGGA 60.611 50.000 14.63 0.00 0.00 4.02
5864 6042 2.740447 GACAACTAAATGACCGGTGGAC 59.260 50.000 14.63 0.00 0.00 4.02
5875 6053 4.101448 GGTGGACGGCCTGAGCAT 62.101 66.667 9.82 0.00 42.56 3.79
5883 6278 2.894387 GCCTGAGCATCCTCGTGC 60.894 66.667 0.00 0.00 45.38 5.34
5896 6291 3.857854 CGTGCTCAGTGCCGATGC 61.858 66.667 0.00 0.00 42.00 3.91
5933 6328 1.078567 GTGGCCTCCTTGCTCTCTG 60.079 63.158 3.32 0.00 0.00 3.35
5935 6330 1.992277 GGCCTCCTTGCTCTCTGGA 60.992 63.158 0.00 0.00 0.00 3.86
5937 6332 0.392327 GCCTCCTTGCTCTCTGGAAC 60.392 60.000 0.00 0.00 0.00 3.62
5938 6333 0.108424 CCTCCTTGCTCTCTGGAACG 60.108 60.000 0.00 0.00 0.00 3.95
5939 6334 0.108424 CTCCTTGCTCTCTGGAACGG 60.108 60.000 0.00 0.00 0.00 4.44
5940 6335 1.743252 CCTTGCTCTCTGGAACGGC 60.743 63.158 0.00 0.00 32.53 5.68
5941 6336 1.743252 CTTGCTCTCTGGAACGGCC 60.743 63.158 0.00 0.00 32.53 6.13
5942 6337 2.454832 CTTGCTCTCTGGAACGGCCA 62.455 60.000 2.24 0.00 46.96 5.36
5943 6338 2.435059 GCTCTCTGGAACGGCCAC 60.435 66.667 2.24 0.00 43.33 5.01
5944 6339 3.059982 CTCTCTGGAACGGCCACA 58.940 61.111 2.24 0.00 43.33 4.17
5945 6340 1.599047 CTCTCTGGAACGGCCACAT 59.401 57.895 2.24 0.00 43.33 3.21
5946 6341 0.460987 CTCTCTGGAACGGCCACATC 60.461 60.000 2.24 0.00 43.33 3.06
5947 6342 1.191489 TCTCTGGAACGGCCACATCA 61.191 55.000 2.24 0.00 43.33 3.07
5948 6343 0.742281 CTCTGGAACGGCCACATCAG 60.742 60.000 2.24 5.15 43.33 2.90
5949 6344 1.003355 CTGGAACGGCCACATCAGT 60.003 57.895 2.24 0.00 43.33 3.41
5950 6345 1.003839 TGGAACGGCCACATCAGTC 60.004 57.895 2.24 0.00 43.33 3.51
5951 6346 1.003839 GGAACGGCCACATCAGTCA 60.004 57.895 2.24 0.00 36.34 3.41
5952 6347 0.392998 GGAACGGCCACATCAGTCAT 60.393 55.000 2.24 0.00 36.34 3.06
5953 6348 0.729116 GAACGGCCACATCAGTCATG 59.271 55.000 2.24 0.00 38.64 3.07
5954 6349 1.308069 AACGGCCACATCAGTCATGC 61.308 55.000 2.24 0.00 35.65 4.06
5955 6350 2.475466 CGGCCACATCAGTCATGCC 61.475 63.158 2.24 0.00 35.65 4.40
5956 6351 2.475466 GGCCACATCAGTCATGCCG 61.475 63.158 0.00 0.00 35.65 5.69
5957 6352 3.104766 CCACATCAGTCATGCCGC 58.895 61.111 0.00 0.00 35.65 6.53
6059 6454 4.831307 GTCTCGGTGCGTCGCGAT 62.831 66.667 14.06 0.00 0.00 4.58
6060 6455 4.829518 TCTCGGTGCGTCGCGATG 62.830 66.667 23.84 23.84 0.00 3.84
6065 6460 3.864686 GTGCGTCGCGATGCCATT 61.865 61.111 41.16 0.00 42.47 3.16
6066 6461 3.124270 TGCGTCGCGATGCCATTT 61.124 55.556 41.16 0.00 42.47 2.32
6067 6462 2.648724 GCGTCGCGATGCCATTTG 60.649 61.111 37.06 10.45 37.37 2.32
6068 6463 2.784596 CGTCGCGATGCCATTTGT 59.215 55.556 16.48 0.00 0.00 2.83
6069 6464 1.134487 CGTCGCGATGCCATTTGTT 59.866 52.632 16.48 0.00 0.00 2.83
6070 6465 1.127571 CGTCGCGATGCCATTTGTTG 61.128 55.000 16.48 0.00 0.00 3.33
6071 6466 0.167908 GTCGCGATGCCATTTGTTGA 59.832 50.000 14.06 0.00 0.00 3.18
6072 6467 1.093972 TCGCGATGCCATTTGTTGAT 58.906 45.000 3.71 0.00 0.00 2.57
6073 6468 1.193644 CGCGATGCCATTTGTTGATG 58.806 50.000 0.00 0.00 0.00 3.07
6081 6476 2.896168 CCATTTGTTGATGGCATGGTC 58.104 47.619 3.81 0.00 40.11 4.02
6082 6477 2.532235 CATTTGTTGATGGCATGGTCG 58.468 47.619 3.81 0.00 0.00 4.79
6083 6478 0.243365 TTTGTTGATGGCATGGTCGC 59.757 50.000 3.81 0.00 0.00 5.19
6084 6479 0.892814 TTGTTGATGGCATGGTCGCA 60.893 50.000 3.81 0.00 0.00 5.10
6085 6480 1.307355 TGTTGATGGCATGGTCGCAG 61.307 55.000 3.81 0.00 0.00 5.18
6086 6481 2.409055 TTGATGGCATGGTCGCAGC 61.409 57.895 3.81 0.00 0.00 5.25
6087 6482 2.825387 GATGGCATGGTCGCAGCA 60.825 61.111 3.81 0.00 0.00 4.41
6088 6483 2.124024 ATGGCATGGTCGCAGCAT 60.124 55.556 0.00 0.00 36.65 3.79
6089 6484 1.731433 GATGGCATGGTCGCAGCATT 61.731 55.000 3.81 0.00 33.46 3.56
6090 6485 1.731433 ATGGCATGGTCGCAGCATTC 61.731 55.000 0.00 0.00 33.46 2.67
6091 6486 2.117156 GGCATGGTCGCAGCATTCT 61.117 57.895 0.00 0.00 33.46 2.40
6092 6487 1.660560 GGCATGGTCGCAGCATTCTT 61.661 55.000 0.00 0.00 33.46 2.52
6093 6488 0.171903 GCATGGTCGCAGCATTCTTT 59.828 50.000 0.00 0.00 33.46 2.52
6094 6489 1.904144 CATGGTCGCAGCATTCTTTG 58.096 50.000 0.00 0.00 33.46 2.77
6095 6490 1.200716 CATGGTCGCAGCATTCTTTGT 59.799 47.619 0.00 0.00 33.46 2.83
6096 6491 0.592637 TGGTCGCAGCATTCTTTGTG 59.407 50.000 0.00 0.00 0.00 3.33
6097 6492 0.109597 GGTCGCAGCATTCTTTGTGG 60.110 55.000 0.00 0.00 0.00 4.17
6098 6493 0.874390 GTCGCAGCATTCTTTGTGGA 59.126 50.000 0.00 0.00 0.00 4.02
6099 6494 1.135859 GTCGCAGCATTCTTTGTGGAG 60.136 52.381 0.00 0.00 0.00 3.86
6100 6495 0.169672 CGCAGCATTCTTTGTGGAGG 59.830 55.000 0.00 0.00 0.00 4.30
6101 6496 1.251251 GCAGCATTCTTTGTGGAGGT 58.749 50.000 0.00 0.00 0.00 3.85
6102 6497 1.200948 GCAGCATTCTTTGTGGAGGTC 59.799 52.381 0.00 0.00 0.00 3.85
6103 6498 1.466167 CAGCATTCTTTGTGGAGGTCG 59.534 52.381 0.00 0.00 0.00 4.79
6104 6499 1.072331 AGCATTCTTTGTGGAGGTCGT 59.928 47.619 0.00 0.00 0.00 4.34
6105 6500 1.464997 GCATTCTTTGTGGAGGTCGTC 59.535 52.381 0.00 0.00 0.00 4.20
6106 6501 1.726791 CATTCTTTGTGGAGGTCGTCG 59.273 52.381 0.00 0.00 0.00 5.12
6107 6502 0.748450 TTCTTTGTGGAGGTCGTCGT 59.252 50.000 0.00 0.00 0.00 4.34
6108 6503 0.313043 TCTTTGTGGAGGTCGTCGTC 59.687 55.000 0.00 0.00 0.00 4.20
6109 6504 0.031585 CTTTGTGGAGGTCGTCGTCA 59.968 55.000 4.84 0.00 0.00 4.35
6110 6505 0.460722 TTTGTGGAGGTCGTCGTCAA 59.539 50.000 4.84 0.00 0.00 3.18
6111 6506 0.031585 TTGTGGAGGTCGTCGTCAAG 59.968 55.000 4.84 0.00 0.00 3.02
6112 6507 0.820482 TGTGGAGGTCGTCGTCAAGA 60.820 55.000 4.84 0.00 0.00 3.02
6113 6508 0.109689 GTGGAGGTCGTCGTCAAGAG 60.110 60.000 4.84 0.00 0.00 2.85
6114 6509 1.241990 TGGAGGTCGTCGTCAAGAGG 61.242 60.000 4.84 0.00 36.16 3.69
6115 6510 1.153997 GAGGTCGTCGTCAAGAGGC 60.154 63.158 0.00 0.00 34.90 4.70
6116 6511 1.863662 GAGGTCGTCGTCAAGAGGCA 61.864 60.000 0.00 0.00 34.90 4.75
6117 6512 1.215647 GGTCGTCGTCAAGAGGCAT 59.784 57.895 0.00 0.00 34.90 4.40
6118 6513 0.802607 GGTCGTCGTCAAGAGGCATC 60.803 60.000 0.00 0.00 34.90 3.91
6119 6514 0.171455 GTCGTCGTCAAGAGGCATCT 59.829 55.000 0.00 0.00 37.39 2.90
6120 6515 0.452184 TCGTCGTCAAGAGGCATCTC 59.548 55.000 0.00 0.00 40.25 2.75
6121 6516 0.171231 CGTCGTCAAGAGGCATCTCA 59.829 55.000 0.00 0.00 42.34 3.27
6122 6517 1.202348 CGTCGTCAAGAGGCATCTCAT 60.202 52.381 0.00 0.00 42.34 2.90
6123 6518 2.200067 GTCGTCAAGAGGCATCTCATG 58.800 52.381 0.00 0.00 42.34 3.07
6124 6519 1.827344 TCGTCAAGAGGCATCTCATGT 59.173 47.619 0.00 0.00 42.34 3.21
6125 6520 2.159184 TCGTCAAGAGGCATCTCATGTC 60.159 50.000 0.00 0.00 42.34 3.06
6127 6522 3.067320 CGTCAAGAGGCATCTCATGTCTA 59.933 47.826 0.00 0.00 46.97 2.59
6128 6523 4.440663 CGTCAAGAGGCATCTCATGTCTAA 60.441 45.833 0.00 0.00 46.97 2.10
6129 6524 5.049167 GTCAAGAGGCATCTCATGTCTAAG 58.951 45.833 0.00 0.00 46.97 2.18
6130 6525 4.713814 TCAAGAGGCATCTCATGTCTAAGT 59.286 41.667 0.00 0.00 46.97 2.24
6131 6526 5.188555 TCAAGAGGCATCTCATGTCTAAGTT 59.811 40.000 0.00 0.00 46.97 2.66
6132 6527 5.275067 AGAGGCATCTCATGTCTAAGTTC 57.725 43.478 0.00 0.00 46.97 3.01
6133 6528 4.100808 AGAGGCATCTCATGTCTAAGTTCC 59.899 45.833 0.00 0.00 46.97 3.62
6134 6529 3.776969 AGGCATCTCATGTCTAAGTTCCA 59.223 43.478 0.00 0.00 44.78 3.53
6135 6530 4.411540 AGGCATCTCATGTCTAAGTTCCAT 59.588 41.667 0.00 0.00 44.78 3.41
6136 6531 4.514441 GGCATCTCATGTCTAAGTTCCATG 59.486 45.833 0.00 0.00 37.82 3.66
6137 6532 4.024218 GCATCTCATGTCTAAGTTCCATGC 60.024 45.833 0.00 0.00 36.70 4.06
6138 6533 4.142609 TCTCATGTCTAAGTTCCATGCC 57.857 45.455 0.00 0.00 36.70 4.40
6139 6534 2.868583 CTCATGTCTAAGTTCCATGCCG 59.131 50.000 0.00 0.00 36.70 5.69
6140 6535 1.942657 CATGTCTAAGTTCCATGCCGG 59.057 52.381 0.00 0.00 30.63 6.13
6141 6536 0.251916 TGTCTAAGTTCCATGCCGGG 59.748 55.000 2.18 0.00 34.36 5.73
6142 6537 1.095807 GTCTAAGTTCCATGCCGGGC 61.096 60.000 13.32 13.32 34.36 6.13
6143 6538 1.077787 CTAAGTTCCATGCCGGGCA 60.078 57.895 26.11 26.11 44.86 5.36
6144 6539 1.376609 CTAAGTTCCATGCCGGGCAC 61.377 60.000 26.48 11.44 43.04 5.01
6202 6597 4.004982 TCGTTTTGTGGCCTAATTACTCC 58.995 43.478 3.32 0.00 0.00 3.85
6206 6601 0.835276 GTGGCCTAATTACTCCCCGT 59.165 55.000 3.32 0.00 0.00 5.28
6218 6615 1.677637 CTCCCCGTAGAGAAGTGCCC 61.678 65.000 0.00 0.00 35.82 5.36
6219 6616 1.987855 CCCCGTAGAGAAGTGCCCA 60.988 63.158 0.00 0.00 0.00 5.36
6227 6624 1.623811 AGAGAAGTGCCCATAACGTGT 59.376 47.619 0.00 0.00 0.00 4.49
6231 6628 4.000988 AGAAGTGCCCATAACGTGTTTAG 58.999 43.478 0.00 0.00 0.00 1.85
6232 6629 2.706890 AGTGCCCATAACGTGTTTAGG 58.293 47.619 0.00 0.00 0.00 2.69
6233 6630 1.131693 GTGCCCATAACGTGTTTAGGC 59.868 52.381 9.28 9.28 39.41 3.93
6234 6631 0.736636 GCCCATAACGTGTTTAGGCC 59.263 55.000 0.00 0.00 32.68 5.19
6235 6632 1.385528 CCCATAACGTGTTTAGGCCC 58.614 55.000 0.00 0.00 0.00 5.80
6236 6633 1.064979 CCCATAACGTGTTTAGGCCCT 60.065 52.381 0.00 0.00 0.00 5.19
6237 6634 2.014128 CCATAACGTGTTTAGGCCCTG 58.986 52.381 0.00 0.00 0.00 4.45
6238 6635 2.617021 CCATAACGTGTTTAGGCCCTGT 60.617 50.000 0.00 0.00 0.00 4.00
6239 6636 2.934886 TAACGTGTTTAGGCCCTGTT 57.065 45.000 0.00 0.00 0.00 3.16
6240 6637 2.061509 AACGTGTTTAGGCCCTGTTT 57.938 45.000 0.00 0.00 0.00 2.83
6241 6638 1.314730 ACGTGTTTAGGCCCTGTTTG 58.685 50.000 0.00 0.00 0.00 2.93
6242 6639 0.596082 CGTGTTTAGGCCCTGTTTGG 59.404 55.000 0.00 0.00 0.00 3.28
6243 6640 1.816183 CGTGTTTAGGCCCTGTTTGGA 60.816 52.381 0.00 0.00 38.35 3.53
6244 6641 2.525368 GTGTTTAGGCCCTGTTTGGAT 58.475 47.619 0.00 0.00 38.35 3.41
6245 6642 2.897326 GTGTTTAGGCCCTGTTTGGATT 59.103 45.455 0.00 0.00 38.35 3.01
6246 6643 3.056821 GTGTTTAGGCCCTGTTTGGATTC 60.057 47.826 0.00 0.00 38.35 2.52
6247 6644 3.181423 TGTTTAGGCCCTGTTTGGATTCT 60.181 43.478 0.00 0.00 38.35 2.40
6248 6645 3.825908 TTAGGCCCTGTTTGGATTCTT 57.174 42.857 0.00 0.00 38.35 2.52
6249 6646 1.928868 AGGCCCTGTTTGGATTCTTG 58.071 50.000 0.00 0.00 38.35 3.02
6250 6647 1.147817 AGGCCCTGTTTGGATTCTTGT 59.852 47.619 0.00 0.00 38.35 3.16
6251 6648 1.970640 GGCCCTGTTTGGATTCTTGTT 59.029 47.619 0.00 0.00 38.35 2.83
6252 6649 2.368548 GGCCCTGTTTGGATTCTTGTTT 59.631 45.455 0.00 0.00 38.35 2.83
6253 6650 3.181455 GGCCCTGTTTGGATTCTTGTTTT 60.181 43.478 0.00 0.00 38.35 2.43
6254 6651 4.450976 GCCCTGTTTGGATTCTTGTTTTT 58.549 39.130 0.00 0.00 38.35 1.94
6255 6652 4.511454 GCCCTGTTTGGATTCTTGTTTTTC 59.489 41.667 0.00 0.00 38.35 2.29
6256 6653 5.684813 GCCCTGTTTGGATTCTTGTTTTTCT 60.685 40.000 0.00 0.00 38.35 2.52
6257 6654 6.348498 CCCTGTTTGGATTCTTGTTTTTCTT 58.652 36.000 0.00 0.00 38.35 2.52
6258 6655 6.823182 CCCTGTTTGGATTCTTGTTTTTCTTT 59.177 34.615 0.00 0.00 38.35 2.52
6259 6656 7.011389 CCCTGTTTGGATTCTTGTTTTTCTTTC 59.989 37.037 0.00 0.00 38.35 2.62
6260 6657 7.765819 CCTGTTTGGATTCTTGTTTTTCTTTCT 59.234 33.333 0.00 0.00 38.35 2.52
6261 6658 9.801873 CTGTTTGGATTCTTGTTTTTCTTTCTA 57.198 29.630 0.00 0.00 0.00 2.10
6283 6680 4.957759 AATACACTTGTATTTCCGCCAC 57.042 40.909 8.54 0.00 45.90 5.01
6284 6681 1.530323 ACACTTGTATTTCCGCCACC 58.470 50.000 0.00 0.00 0.00 4.61
6285 6682 0.808755 CACTTGTATTTCCGCCACCC 59.191 55.000 0.00 0.00 0.00 4.61
6286 6683 0.402504 ACTTGTATTTCCGCCACCCA 59.597 50.000 0.00 0.00 0.00 4.51
6287 6684 1.094785 CTTGTATTTCCGCCACCCAG 58.905 55.000 0.00 0.00 0.00 4.45
6288 6685 0.693622 TTGTATTTCCGCCACCCAGA 59.306 50.000 0.00 0.00 0.00 3.86
6289 6686 0.693622 TGTATTTCCGCCACCCAGAA 59.306 50.000 0.00 0.00 0.00 3.02
6290 6687 1.339631 TGTATTTCCGCCACCCAGAAG 60.340 52.381 0.00 0.00 0.00 2.85
6291 6688 0.988832 TATTTCCGCCACCCAGAAGT 59.011 50.000 0.00 0.00 0.00 3.01
6292 6689 0.112412 ATTTCCGCCACCCAGAAGTT 59.888 50.000 0.00 0.00 0.00 2.66
6293 6690 0.766131 TTTCCGCCACCCAGAAGTTA 59.234 50.000 0.00 0.00 0.00 2.24
6294 6691 0.766131 TTCCGCCACCCAGAAGTTAA 59.234 50.000 0.00 0.00 0.00 2.01
6295 6692 0.766131 TCCGCCACCCAGAAGTTAAA 59.234 50.000 0.00 0.00 0.00 1.52
6296 6693 1.143277 TCCGCCACCCAGAAGTTAAAA 59.857 47.619 0.00 0.00 0.00 1.52
6297 6694 2.167662 CCGCCACCCAGAAGTTAAAAT 58.832 47.619 0.00 0.00 0.00 1.82
6298 6695 3.009253 TCCGCCACCCAGAAGTTAAAATA 59.991 43.478 0.00 0.00 0.00 1.40
6299 6696 3.128068 CCGCCACCCAGAAGTTAAAATAC 59.872 47.826 0.00 0.00 0.00 1.89
6300 6697 3.754323 CGCCACCCAGAAGTTAAAATACA 59.246 43.478 0.00 0.00 0.00 2.29
6301 6698 4.379082 CGCCACCCAGAAGTTAAAATACAC 60.379 45.833 0.00 0.00 0.00 2.90
6302 6699 4.082408 GCCACCCAGAAGTTAAAATACACC 60.082 45.833 0.00 0.00 0.00 4.16
6303 6700 5.321927 CCACCCAGAAGTTAAAATACACCT 58.678 41.667 0.00 0.00 0.00 4.00
6304 6701 5.183140 CCACCCAGAAGTTAAAATACACCTG 59.817 44.000 0.00 0.00 0.00 4.00
6305 6702 5.768164 CACCCAGAAGTTAAAATACACCTGT 59.232 40.000 0.00 0.00 0.00 4.00
6306 6703 6.938030 CACCCAGAAGTTAAAATACACCTGTA 59.062 38.462 0.00 0.00 34.67 2.74
6307 6704 7.610305 CACCCAGAAGTTAAAATACACCTGTAT 59.390 37.037 0.00 0.00 42.60 2.29
6309 6706 8.458843 CCCAGAAGTTAAAATACACCTGTATTG 58.541 37.037 10.73 0.00 46.98 1.90
6310 6707 9.226606 CCAGAAGTTAAAATACACCTGTATTGA 57.773 33.333 10.73 1.47 46.98 2.57
6319 6716 7.875327 AATACACCTGTATTGAATTACCACC 57.125 36.000 9.44 0.00 46.20 4.61
6320 6717 5.249780 ACACCTGTATTGAATTACCACCA 57.750 39.130 0.00 0.00 0.00 4.17
6321 6718 5.826643 ACACCTGTATTGAATTACCACCAT 58.173 37.500 0.00 0.00 0.00 3.55
6322 6719 6.252995 ACACCTGTATTGAATTACCACCATT 58.747 36.000 0.00 0.00 0.00 3.16
6323 6720 7.406916 ACACCTGTATTGAATTACCACCATTA 58.593 34.615 0.00 0.00 0.00 1.90
6324 6721 7.338449 ACACCTGTATTGAATTACCACCATTAC 59.662 37.037 0.00 0.00 0.00 1.89
6325 6722 6.831868 ACCTGTATTGAATTACCACCATTACC 59.168 38.462 0.00 0.00 0.00 2.85
6326 6723 6.831353 CCTGTATTGAATTACCACCATTACCA 59.169 38.462 0.00 0.00 0.00 3.25
6327 6724 7.201785 CCTGTATTGAATTACCACCATTACCAC 60.202 40.741 0.00 0.00 0.00 4.16
6328 6725 6.603997 TGTATTGAATTACCACCATTACCACC 59.396 38.462 0.00 0.00 0.00 4.61
6329 6726 4.659529 TGAATTACCACCATTACCACCA 57.340 40.909 0.00 0.00 0.00 4.17
6330 6727 5.199982 TGAATTACCACCATTACCACCAT 57.800 39.130 0.00 0.00 0.00 3.55
6331 6728 6.328782 TGAATTACCACCATTACCACCATA 57.671 37.500 0.00 0.00 0.00 2.74
6332 6729 6.123651 TGAATTACCACCATTACCACCATAC 58.876 40.000 0.00 0.00 0.00 2.39
6333 6730 4.506937 TTACCACCATTACCACCATACC 57.493 45.455 0.00 0.00 0.00 2.73
6334 6731 2.280103 ACCACCATTACCACCATACCA 58.720 47.619 0.00 0.00 0.00 3.25
6335 6732 2.650322 ACCACCATTACCACCATACCAA 59.350 45.455 0.00 0.00 0.00 3.67
6336 6733 3.287222 CCACCATTACCACCATACCAAG 58.713 50.000 0.00 0.00 0.00 3.61
6337 6734 2.687935 CACCATTACCACCATACCAAGC 59.312 50.000 0.00 0.00 0.00 4.01
6338 6735 1.946768 CCATTACCACCATACCAAGCG 59.053 52.381 0.00 0.00 0.00 4.68
6339 6736 1.333619 CATTACCACCATACCAAGCGC 59.666 52.381 0.00 0.00 0.00 5.92
6340 6737 0.741574 TTACCACCATACCAAGCGCG 60.742 55.000 0.00 0.00 0.00 6.86
6341 6738 2.581208 TACCACCATACCAAGCGCGG 62.581 60.000 8.83 0.00 0.00 6.46
6342 6739 3.876198 CACCATACCAAGCGCGGC 61.876 66.667 8.83 0.00 0.00 6.53
6344 6741 4.856801 CCATACCAAGCGCGGCCT 62.857 66.667 8.83 0.00 0.00 5.19
6345 6742 2.824041 CATACCAAGCGCGGCCTT 60.824 61.111 8.83 0.00 0.00 4.35
6346 6743 1.522806 CATACCAAGCGCGGCCTTA 60.523 57.895 8.83 0.00 0.00 2.69
6347 6744 1.227556 ATACCAAGCGCGGCCTTAG 60.228 57.895 8.83 0.00 0.00 2.18
6348 6745 1.682451 ATACCAAGCGCGGCCTTAGA 61.682 55.000 8.83 0.00 0.00 2.10
6349 6746 2.292794 TACCAAGCGCGGCCTTAGAG 62.293 60.000 8.83 0.00 0.00 2.43
6350 6747 2.184322 CAAGCGCGGCCTTAGAGA 59.816 61.111 8.83 0.00 0.00 3.10
6351 6748 2.167861 CAAGCGCGGCCTTAGAGAC 61.168 63.158 8.83 0.00 0.00 3.36
6352 6749 2.352032 AAGCGCGGCCTTAGAGACT 61.352 57.895 8.83 0.00 0.00 3.24
6353 6750 1.889530 AAGCGCGGCCTTAGAGACTT 61.890 55.000 8.83 0.00 0.00 3.01
6354 6751 1.878975 GCGCGGCCTTAGAGACTTC 60.879 63.158 8.83 0.00 0.00 3.01
6355 6752 1.586564 CGCGGCCTTAGAGACTTCG 60.587 63.158 0.00 0.00 0.00 3.79
6356 6753 1.878975 GCGGCCTTAGAGACTTCGC 60.879 63.158 0.00 0.00 35.12 4.70
6357 6754 1.511305 CGGCCTTAGAGACTTCGCA 59.489 57.895 0.00 0.00 0.00 5.10
6358 6755 0.108804 CGGCCTTAGAGACTTCGCAA 60.109 55.000 0.00 0.00 0.00 4.85
6359 6756 1.671850 CGGCCTTAGAGACTTCGCAAA 60.672 52.381 0.00 0.00 0.00 3.68
6360 6757 2.633488 GGCCTTAGAGACTTCGCAAAT 58.367 47.619 0.00 0.00 0.00 2.32
6361 6758 3.010420 GGCCTTAGAGACTTCGCAAATT 58.990 45.455 0.00 0.00 0.00 1.82
6362 6759 3.181506 GGCCTTAGAGACTTCGCAAATTG 60.182 47.826 0.00 0.00 0.00 2.32
6363 6760 3.684788 GCCTTAGAGACTTCGCAAATTGA 59.315 43.478 0.00 0.00 0.00 2.57
6364 6761 4.333926 GCCTTAGAGACTTCGCAAATTGAT 59.666 41.667 0.00 0.00 0.00 2.57
6365 6762 5.523916 GCCTTAGAGACTTCGCAAATTGATA 59.476 40.000 0.00 0.00 0.00 2.15
6366 6763 6.292596 GCCTTAGAGACTTCGCAAATTGATAG 60.293 42.308 0.00 0.00 0.00 2.08
6367 6764 6.980978 CCTTAGAGACTTCGCAAATTGATAGA 59.019 38.462 0.00 0.00 0.00 1.98
6368 6765 7.655328 CCTTAGAGACTTCGCAAATTGATAGAT 59.345 37.037 0.00 0.00 0.00 1.98
6369 6766 8.581057 TTAGAGACTTCGCAAATTGATAGATC 57.419 34.615 0.00 0.00 0.00 2.75
6370 6767 6.815089 AGAGACTTCGCAAATTGATAGATCT 58.185 36.000 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.207089 GTGAACCTCGTCATCCATGGA 59.793 52.381 18.88 18.88 0.00 3.41
32 33 1.522258 CAAGAAAAATGTGTGTGCGCC 59.478 47.619 4.18 0.00 0.00 6.53
34 35 5.034152 AGTAACAAGAAAAATGTGTGTGCG 58.966 37.500 0.00 0.00 0.00 5.34
62 63 7.259088 AGAGAAACCCTAGCTATTCTTTCAA 57.741 36.000 8.38 0.00 32.54 2.69
63 64 6.875972 AGAGAAACCCTAGCTATTCTTTCA 57.124 37.500 8.38 0.00 32.54 2.69
64 65 8.479689 AGTTAGAGAAACCCTAGCTATTCTTTC 58.520 37.037 8.38 8.30 39.03 2.62
67 68 7.981475 AAGTTAGAGAAACCCTAGCTATTCT 57.019 36.000 6.97 6.97 39.03 2.40
74 84 8.033626 ACGTGATTTAAGTTAGAGAAACCCTAG 58.966 37.037 0.00 0.00 39.03 3.02
292 314 7.618502 TTCTTAGCGCAATATTCTTTTACCA 57.381 32.000 11.47 0.00 0.00 3.25
363 387 6.884836 GGGTTATTTTTCTTCTCTCTTGCCTA 59.115 38.462 0.00 0.00 0.00 3.93
370 394 5.524281 CGCCTAGGGTTATTTTTCTTCTCTC 59.476 44.000 11.72 0.00 0.00 3.20
440 479 3.808728 CAGGGAGATATTTTCGGCAAGA 58.191 45.455 0.00 0.00 0.00 3.02
487 526 6.378710 ACACAAGAAAGAAAGAGGTAAAGC 57.621 37.500 0.00 0.00 0.00 3.51
689 730 2.761195 CGAGATCTCACGGGTGCGA 61.761 63.158 22.31 0.00 0.00 5.10
701 742 3.242316 GGCACGGTTTGAAATACGAGATC 60.242 47.826 10.98 0.00 0.00 2.75
705 746 1.158434 GGGCACGGTTTGAAATACGA 58.842 50.000 10.98 0.00 0.00 3.43
706 747 0.169451 GGGGCACGGTTTGAAATACG 59.831 55.000 3.95 3.95 0.00 3.06
798 840 2.682876 TTCGTGCCCGGCGATTTTC 61.683 57.895 9.30 0.00 38.21 2.29
836 878 3.762407 TGCCTAATTATAGCAGCGGAA 57.238 42.857 6.29 0.00 0.00 4.30
929 975 2.822215 GGATACCAAGGCGAGGAGA 58.178 57.895 5.26 0.00 0.00 3.71
991 1045 2.507102 CGTCGACATTGGCGCTCT 60.507 61.111 17.16 0.00 0.00 4.09
992 1046 3.554692 CCGTCGACATTGGCGCTC 61.555 66.667 17.16 1.93 0.00 5.03
1113 1187 3.264845 GGGCAAGGTGAGGGGGAA 61.265 66.667 0.00 0.00 0.00 3.97
1129 1203 2.818921 TGGATCAAAACATGAAGGGGG 58.181 47.619 0.00 0.00 42.54 5.40
1132 1206 5.080969 AGCAATGGATCAAAACATGAAGG 57.919 39.130 0.00 0.00 42.54 3.46
1134 1208 4.735985 CGAGCAATGGATCAAAACATGAA 58.264 39.130 0.00 0.00 42.54 2.57
1165 1239 2.075489 GCGTACGGATCGATCAGCG 61.075 63.158 25.93 21.91 42.69 5.18
1167 1241 2.075489 GCGCGTACGGATCGATCAG 61.075 63.158 25.93 23.83 40.57 2.90
1198 1273 1.209898 GCTAGCGCACAATGCACAA 59.790 52.632 11.47 0.00 45.36 3.33
1199 1274 1.672030 AGCTAGCGCACAATGCACA 60.672 52.632 11.47 0.00 45.36 4.57
1272 1350 7.201530 CGCGGAACTACAGATTAAGAAAATCTT 60.202 37.037 0.00 0.00 40.35 2.40
1338 1426 3.450578 GTTATCACCGGAGCAATTCGTA 58.549 45.455 9.46 0.00 0.00 3.43
1357 1445 2.162681 GCAGTAATGGAGTTGCTGGTT 58.837 47.619 7.74 0.00 46.74 3.67
1384 1472 2.032030 AGGACAAAAGCGAAACGTCATG 60.032 45.455 0.00 0.00 0.00 3.07
1389 1477 2.108700 CACAAGGACAAAAGCGAAACG 58.891 47.619 0.00 0.00 0.00 3.60
1500 1599 8.944212 ATCTTGCAAGTTACAACGTAATTAAC 57.056 30.769 25.19 0.00 0.00 2.01
1508 1607 4.378459 GGAAGGATCTTGCAAGTTACAACG 60.378 45.833 25.19 0.00 0.00 4.10
1570 1669 3.491964 CCGGATGCCAAGAACGACTTATA 60.492 47.826 0.00 0.00 37.03 0.98
1571 1670 2.550978 CGGATGCCAAGAACGACTTAT 58.449 47.619 0.00 0.00 37.03 1.73
1589 1688 5.772521 ACTTCAAAATCACAGAATTTCCGG 58.227 37.500 0.00 0.00 0.00 5.14
1656 1758 2.093306 TATTGTCTGTGTTGGCCTCG 57.907 50.000 3.32 0.00 0.00 4.63
1719 1821 4.986054 ATACCCAACTCCACTTGTTACA 57.014 40.909 0.00 0.00 0.00 2.41
1765 1867 2.224992 TGTATCCACATGGGCAACAGTT 60.225 45.455 0.00 0.00 36.21 3.16
1803 1905 9.840427 CAAATCACGTTTTCAGGTAAATCTTAT 57.160 29.630 0.00 0.00 0.00 1.73
1833 1935 9.251440 AGACTAAACATACTGTACTCCAACATA 57.749 33.333 0.00 0.00 0.00 2.29
1942 2044 4.396790 TGCAGGTAAAAATGGACGGATTAC 59.603 41.667 0.00 0.00 0.00 1.89
1973 2075 6.938698 TTAGTAATAGGTTCCAGTGGTGAA 57.061 37.500 9.54 0.00 0.00 3.18
2128 2231 7.110155 AGTGTCAAGGGTACTGGTATAAAATG 58.890 38.462 0.00 0.00 0.00 2.32
2137 2240 6.238648 AGAAATAAAGTGTCAAGGGTACTGG 58.761 40.000 0.00 0.00 0.00 4.00
2141 2244 7.229907 GGTTGAAGAAATAAAGTGTCAAGGGTA 59.770 37.037 0.00 0.00 0.00 3.69
2873 2986 6.994421 ATTTGATCAAGGTTTAGTTTGGGT 57.006 33.333 8.41 0.00 0.00 4.51
2905 3018 4.848357 AGGTATGTTAAACAGAGCAGCAT 58.152 39.130 0.00 0.00 39.97 3.79
2967 3080 4.345859 TTGTCAGTACGACTGGGAAAAT 57.654 40.909 15.47 0.00 45.94 1.82
2976 3089 2.928116 GGGCATAGTTTGTCAGTACGAC 59.072 50.000 9.87 9.87 45.61 4.34
3693 3811 1.338107 ATCAGACACCTTCACGACCA 58.662 50.000 0.00 0.00 0.00 4.02
3844 3962 4.598022 TGATTTGTTATGGATGCAGACCA 58.402 39.130 15.98 15.98 41.83 4.02
4050 4168 6.714356 TGTTGAAATATCTGACATGGTGAACA 59.286 34.615 0.00 0.00 0.00 3.18
4054 4172 8.245491 TCAAATGTTGAAATATCTGACATGGTG 58.755 33.333 0.00 0.00 36.59 4.17
4204 4324 6.434340 GGGGACAGAAGAATTGTTATCAAACT 59.566 38.462 0.00 0.00 37.11 2.66
4208 4328 4.540099 AGGGGGACAGAAGAATTGTTATCA 59.460 41.667 0.00 0.00 0.00 2.15
4212 4332 5.970640 TCTATAGGGGGACAGAAGAATTGTT 59.029 40.000 0.00 0.00 0.00 2.83
4214 4334 6.327626 TCTTCTATAGGGGGACAGAAGAATTG 59.672 42.308 9.76 0.00 46.10 2.32
4298 4422 4.898829 TGCCGGAAAATCATGAAGTATG 57.101 40.909 5.05 0.00 38.17 2.39
4367 4491 3.316308 CCCGGAAGATTGAATCAACATCC 59.684 47.826 0.73 5.72 0.00 3.51
4719 4843 3.727419 GCAACCTGATGCATGGAAC 57.273 52.632 2.46 0.00 45.70 3.62
4738 4862 0.741221 GGTAAGCTCCCTCTTGTGCG 60.741 60.000 0.00 0.00 0.00 5.34
4923 5047 6.397272 TGGCACTTGATGATAACAAAAATCC 58.603 36.000 0.00 0.00 0.00 3.01
4931 5055 5.648092 ACCTTTACTGGCACTTGATGATAAC 59.352 40.000 0.00 0.00 0.00 1.89
4971 5095 3.375610 TCAGCGACTCTCTGTCTGTAATC 59.624 47.826 0.00 0.00 43.25 1.75
4972 5096 3.348119 TCAGCGACTCTCTGTCTGTAAT 58.652 45.455 0.00 0.00 43.25 1.89
4973 5097 2.779506 TCAGCGACTCTCTGTCTGTAA 58.220 47.619 0.00 0.00 43.25 2.41
4974 5098 2.474410 TCAGCGACTCTCTGTCTGTA 57.526 50.000 0.00 0.00 43.25 2.74
4976 5100 2.922387 CAAATCAGCGACTCTCTGTCTG 59.078 50.000 0.00 0.00 43.25 3.51
4977 5101 2.560542 ACAAATCAGCGACTCTCTGTCT 59.439 45.455 0.00 0.00 43.25 3.41
4978 5102 2.953020 ACAAATCAGCGACTCTCTGTC 58.047 47.619 0.00 0.00 42.06 3.51
4979 5103 3.062763 CAACAAATCAGCGACTCTCTGT 58.937 45.455 0.00 0.00 33.48 3.41
4982 5131 3.059884 TGACAACAAATCAGCGACTCTC 58.940 45.455 0.00 0.00 0.00 3.20
5043 5192 4.644234 CCTGTACATGTGCAATTTGGGATA 59.356 41.667 17.61 0.00 0.00 2.59
5229 5378 1.404391 CCAGCATCCAATCAGTGCTTC 59.596 52.381 0.00 0.00 46.29 3.86
5456 5616 4.206375 TGAGCTCTCAAAATTGTGGAACA 58.794 39.130 16.19 0.00 40.51 3.18
5531 5691 6.109156 TGTTCGGCATATCATACCAATAGT 57.891 37.500 0.00 0.00 0.00 2.12
5532 5692 6.401047 CGTTGTTCGGCATATCATACCAATAG 60.401 42.308 0.00 0.00 35.71 1.73
5533 5693 5.407084 CGTTGTTCGGCATATCATACCAATA 59.593 40.000 0.00 0.00 35.71 1.90
5534 5694 4.213270 CGTTGTTCGGCATATCATACCAAT 59.787 41.667 0.00 0.00 35.71 3.16
5535 5695 3.558006 CGTTGTTCGGCATATCATACCAA 59.442 43.478 0.00 0.00 35.71 3.67
5537 5697 3.788434 CGTTGTTCGGCATATCATACC 57.212 47.619 0.00 0.00 35.71 2.73
5649 5813 8.432110 TGCAAGAAGAGCAAATATTCGTAATA 57.568 30.769 0.00 0.00 39.39 0.98
5672 5836 7.441017 AGGAATCTAGACTTGTATTCTCATGC 58.559 38.462 0.00 0.00 0.00 4.06
5684 5848 7.740805 AGACAAACAAAGAGGAATCTAGACTT 58.259 34.615 0.00 0.00 0.00 3.01
5705 5869 4.709397 ACCCAAGTTTCATTTCACAAGACA 59.291 37.500 0.00 0.00 0.00 3.41
5707 5871 4.036262 CGACCCAAGTTTCATTTCACAAGA 59.964 41.667 0.00 0.00 0.00 3.02
5708 5872 4.290155 CGACCCAAGTTTCATTTCACAAG 58.710 43.478 0.00 0.00 0.00 3.16
5730 5907 4.235762 TCCCTATTCAGCGGCCGC 62.236 66.667 42.34 42.34 42.33 6.53
5759 5936 2.115427 TCGGGCACAAGATGAGGAATA 58.885 47.619 0.00 0.00 0.00 1.75
5760 5937 0.911769 TCGGGCACAAGATGAGGAAT 59.088 50.000 0.00 0.00 0.00 3.01
5762 5939 0.911769 AATCGGGCACAAGATGAGGA 59.088 50.000 0.00 0.00 0.00 3.71
5763 5940 1.402968 CAAATCGGGCACAAGATGAGG 59.597 52.381 0.00 0.00 0.00 3.86
5764 5941 2.358957 TCAAATCGGGCACAAGATGAG 58.641 47.619 0.00 0.00 0.00 2.90
5765 5942 2.488204 TCAAATCGGGCACAAGATGA 57.512 45.000 0.00 0.00 0.00 2.92
5766 5943 2.684374 TCATCAAATCGGGCACAAGATG 59.316 45.455 0.00 0.00 34.30 2.90
5767 5944 3.003394 TCATCAAATCGGGCACAAGAT 57.997 42.857 0.00 0.00 0.00 2.40
5859 6037 2.512515 GATGCTCAGGCCGTCCAC 60.513 66.667 0.00 0.00 37.74 4.02
5861 6039 3.453070 GAGGATGCTCAGGCCGTCC 62.453 68.421 9.69 0.00 40.37 4.79
5862 6040 2.107953 GAGGATGCTCAGGCCGTC 59.892 66.667 9.69 0.00 37.74 4.79
5863 6041 3.842923 CGAGGATGCTCAGGCCGT 61.843 66.667 15.10 0.00 37.74 5.68
5864 6042 3.842923 ACGAGGATGCTCAGGCCG 61.843 66.667 15.10 2.83 37.74 6.13
5873 6051 3.791539 GCACTGAGCACGAGGATG 58.208 61.111 0.00 0.00 44.79 3.51
5902 6297 2.095252 GGCCACGCGAGAAGAGTTC 61.095 63.158 15.93 0.00 0.00 3.01
5903 6298 2.048127 GGCCACGCGAGAAGAGTT 60.048 61.111 15.93 0.00 0.00 3.01
5914 6309 2.125350 GAGAGCAAGGAGGCCACG 60.125 66.667 5.01 0.00 0.00 4.94
5933 6328 0.392998 ATGACTGATGTGGCCGTTCC 60.393 55.000 0.00 0.00 0.00 3.62
5935 6330 1.308069 GCATGACTGATGTGGCCGTT 61.308 55.000 0.00 0.00 34.14 4.44
5937 6332 2.475466 GGCATGACTGATGTGGCCG 61.475 63.158 0.00 0.00 34.14 6.13
5938 6333 2.475466 CGGCATGACTGATGTGGCC 61.475 63.158 0.00 0.00 38.04 5.36
5939 6334 3.104766 CGGCATGACTGATGTGGC 58.895 61.111 0.00 0.00 34.14 5.01
5940 6335 2.816360 CGCGGCATGACTGATGTGG 61.816 63.158 0.00 0.00 34.14 4.17
5941 6336 2.705220 CGCGGCATGACTGATGTG 59.295 61.111 0.00 0.00 34.14 3.21
5942 6337 2.512286 CCGCGGCATGACTGATGT 60.512 61.111 14.67 0.00 34.14 3.06
5943 6338 2.512286 ACCGCGGCATGACTGATG 60.512 61.111 28.58 0.00 34.84 3.07
5944 6339 2.202932 GACCGCGGCATGACTGAT 60.203 61.111 28.58 0.57 0.00 2.90
5945 6340 4.794439 CGACCGCGGCATGACTGA 62.794 66.667 28.58 0.00 0.00 3.41
5996 6391 2.399611 GGCAACTACACGCGATGC 59.600 61.111 15.93 12.71 36.31 3.91
6042 6437 4.831307 ATCGCGACGCACCGAGAC 62.831 66.667 21.35 0.00 40.80 3.36
6043 6438 4.829518 CATCGCGACGCACCGAGA 62.830 66.667 21.35 8.78 42.05 4.04
6049 6444 3.124270 AAATGGCATCGCGACGCA 61.124 55.556 29.30 15.21 0.00 5.24
6050 6445 2.648724 CAAATGGCATCGCGACGC 60.649 61.111 20.43 20.43 0.00 5.19
6053 6448 1.093972 ATCAACAAATGGCATCGCGA 58.906 45.000 13.09 13.09 0.00 5.87
6054 6449 1.193644 CATCAACAAATGGCATCGCG 58.806 50.000 0.00 0.00 0.00 5.87
6055 6450 1.563111 CCATCAACAAATGGCATCGC 58.437 50.000 0.00 0.00 39.84 4.58
6062 6457 2.532235 CGACCATGCCATCAACAAATG 58.468 47.619 0.00 0.00 0.00 2.32
6063 6458 1.135024 GCGACCATGCCATCAACAAAT 60.135 47.619 0.00 0.00 0.00 2.32
6064 6459 0.243365 GCGACCATGCCATCAACAAA 59.757 50.000 0.00 0.00 0.00 2.83
6065 6460 0.892814 TGCGACCATGCCATCAACAA 60.893 50.000 0.00 0.00 0.00 2.83
6066 6461 1.303155 TGCGACCATGCCATCAACA 60.303 52.632 0.00 0.00 0.00 3.33
6067 6462 1.430632 CTGCGACCATGCCATCAAC 59.569 57.895 0.00 0.00 0.00 3.18
6068 6463 2.409055 GCTGCGACCATGCCATCAA 61.409 57.895 0.00 0.00 0.00 2.57
6069 6464 2.825387 GCTGCGACCATGCCATCA 60.825 61.111 0.00 0.00 0.00 3.07
6070 6465 1.731433 AATGCTGCGACCATGCCATC 61.731 55.000 0.00 0.00 0.00 3.51
6071 6466 1.731433 GAATGCTGCGACCATGCCAT 61.731 55.000 0.00 0.00 0.00 4.40
6072 6467 2.361483 AATGCTGCGACCATGCCA 60.361 55.556 0.00 0.00 0.00 4.92
6073 6468 1.660560 AAGAATGCTGCGACCATGCC 61.661 55.000 0.00 0.00 0.00 4.40
6074 6469 0.171903 AAAGAATGCTGCGACCATGC 59.828 50.000 0.00 0.00 0.00 4.06
6075 6470 1.200716 ACAAAGAATGCTGCGACCATG 59.799 47.619 0.00 0.00 0.00 3.66
6076 6471 1.200716 CACAAAGAATGCTGCGACCAT 59.799 47.619 0.00 0.00 0.00 3.55
6077 6472 0.592637 CACAAAGAATGCTGCGACCA 59.407 50.000 0.00 0.00 0.00 4.02
6078 6473 0.109597 CCACAAAGAATGCTGCGACC 60.110 55.000 0.00 0.00 0.00 4.79
6079 6474 0.874390 TCCACAAAGAATGCTGCGAC 59.126 50.000 0.00 0.00 0.00 5.19
6080 6475 1.159285 CTCCACAAAGAATGCTGCGA 58.841 50.000 0.00 0.00 0.00 5.10
6081 6476 0.169672 CCTCCACAAAGAATGCTGCG 59.830 55.000 0.00 0.00 0.00 5.18
6082 6477 1.200948 GACCTCCACAAAGAATGCTGC 59.799 52.381 0.00 0.00 0.00 5.25
6083 6478 1.466167 CGACCTCCACAAAGAATGCTG 59.534 52.381 0.00 0.00 0.00 4.41
6084 6479 1.072331 ACGACCTCCACAAAGAATGCT 59.928 47.619 0.00 0.00 0.00 3.79
6085 6480 1.464997 GACGACCTCCACAAAGAATGC 59.535 52.381 0.00 0.00 0.00 3.56
6086 6481 1.726791 CGACGACCTCCACAAAGAATG 59.273 52.381 0.00 0.00 0.00 2.67
6087 6482 1.343465 ACGACGACCTCCACAAAGAAT 59.657 47.619 0.00 0.00 0.00 2.40
6088 6483 0.748450 ACGACGACCTCCACAAAGAA 59.252 50.000 0.00 0.00 0.00 2.52
6089 6484 0.313043 GACGACGACCTCCACAAAGA 59.687 55.000 0.00 0.00 0.00 2.52
6090 6485 0.031585 TGACGACGACCTCCACAAAG 59.968 55.000 0.00 0.00 0.00 2.77
6091 6486 0.460722 TTGACGACGACCTCCACAAA 59.539 50.000 0.00 0.00 0.00 2.83
6092 6487 0.031585 CTTGACGACGACCTCCACAA 59.968 55.000 0.00 0.00 0.00 3.33
6093 6488 0.820482 TCTTGACGACGACCTCCACA 60.820 55.000 0.00 0.00 0.00 4.17
6094 6489 0.109689 CTCTTGACGACGACCTCCAC 60.110 60.000 0.00 0.00 0.00 4.02
6095 6490 1.241990 CCTCTTGACGACGACCTCCA 61.242 60.000 0.00 0.00 0.00 3.86
6096 6491 1.507174 CCTCTTGACGACGACCTCC 59.493 63.158 0.00 0.00 0.00 4.30
6097 6492 1.153997 GCCTCTTGACGACGACCTC 60.154 63.158 0.00 0.00 0.00 3.85
6098 6493 1.251527 ATGCCTCTTGACGACGACCT 61.252 55.000 0.00 0.00 0.00 3.85
6099 6494 0.802607 GATGCCTCTTGACGACGACC 60.803 60.000 0.00 0.00 0.00 4.79
6100 6495 0.171455 AGATGCCTCTTGACGACGAC 59.829 55.000 0.00 0.00 0.00 4.34
6101 6496 0.452184 GAGATGCCTCTTGACGACGA 59.548 55.000 0.00 0.00 36.50 4.20
6102 6497 0.171231 TGAGATGCCTCTTGACGACG 59.829 55.000 0.00 0.00 40.10 5.12
6103 6498 2.200067 CATGAGATGCCTCTTGACGAC 58.800 52.381 0.00 0.00 43.42 4.34
6104 6499 1.827344 ACATGAGATGCCTCTTGACGA 59.173 47.619 0.00 0.00 43.42 4.20
6105 6500 2.159128 AGACATGAGATGCCTCTTGACG 60.159 50.000 0.00 0.00 43.42 4.35
6106 6501 3.540314 AGACATGAGATGCCTCTTGAC 57.460 47.619 0.00 8.34 43.42 3.18
6107 6502 4.713814 ACTTAGACATGAGATGCCTCTTGA 59.286 41.667 0.00 0.00 43.42 3.02
6108 6503 5.021033 ACTTAGACATGAGATGCCTCTTG 57.979 43.478 0.00 0.00 45.12 3.02
6109 6504 5.396213 GGAACTTAGACATGAGATGCCTCTT 60.396 44.000 0.00 0.00 40.10 2.85
6110 6505 4.100808 GGAACTTAGACATGAGATGCCTCT 59.899 45.833 0.00 0.00 40.10 3.69
6111 6506 4.141846 TGGAACTTAGACATGAGATGCCTC 60.142 45.833 0.00 0.00 39.86 4.70
6112 6507 3.776969 TGGAACTTAGACATGAGATGCCT 59.223 43.478 0.00 0.00 0.00 4.75
6113 6508 4.142609 TGGAACTTAGACATGAGATGCC 57.857 45.455 0.00 0.00 0.00 4.40
6114 6509 4.024218 GCATGGAACTTAGACATGAGATGC 60.024 45.833 15.81 0.00 43.46 3.91
6115 6510 4.514441 GGCATGGAACTTAGACATGAGATG 59.486 45.833 15.81 0.00 43.46 2.90
6116 6511 4.712476 GGCATGGAACTTAGACATGAGAT 58.288 43.478 15.81 0.00 43.46 2.75
6117 6512 3.430790 CGGCATGGAACTTAGACATGAGA 60.431 47.826 15.81 0.00 43.46 3.27
6118 6513 2.868583 CGGCATGGAACTTAGACATGAG 59.131 50.000 15.81 8.21 43.46 2.90
6119 6514 2.419990 CCGGCATGGAACTTAGACATGA 60.420 50.000 15.81 0.00 43.46 3.07
6120 6515 1.942657 CCGGCATGGAACTTAGACATG 59.057 52.381 0.00 10.23 43.58 3.21
6121 6516 1.134098 CCCGGCATGGAACTTAGACAT 60.134 52.381 0.00 0.00 42.00 3.06
6122 6517 0.251916 CCCGGCATGGAACTTAGACA 59.748 55.000 0.00 0.00 42.00 3.41
6123 6518 1.095807 GCCCGGCATGGAACTTAGAC 61.096 60.000 3.91 0.00 42.00 2.59
6124 6519 1.223487 GCCCGGCATGGAACTTAGA 59.777 57.895 3.91 0.00 42.00 2.10
6125 6520 1.077787 TGCCCGGCATGGAACTTAG 60.078 57.895 8.43 0.00 42.00 2.18
6126 6521 1.377987 GTGCCCGGCATGGAACTTA 60.378 57.895 16.96 0.00 41.91 2.24
6127 6522 2.676471 GTGCCCGGCATGGAACTT 60.676 61.111 16.96 0.00 41.91 2.66
6202 6597 1.410004 TATGGGCACTTCTCTACGGG 58.590 55.000 0.00 0.00 0.00 5.28
6206 6601 2.829720 ACACGTTATGGGCACTTCTCTA 59.170 45.455 0.00 0.00 0.00 2.43
6218 6615 2.706890 ACAGGGCCTAAACACGTTATG 58.293 47.619 5.28 0.00 0.00 1.90
6219 6616 3.428413 AACAGGGCCTAAACACGTTAT 57.572 42.857 5.28 0.00 0.00 1.89
6227 6624 3.825908 AGAATCCAAACAGGGCCTAAA 57.174 42.857 5.28 0.00 38.24 1.85
6231 6628 1.632589 ACAAGAATCCAAACAGGGCC 58.367 50.000 0.00 0.00 38.24 5.80
6232 6629 3.751479 AAACAAGAATCCAAACAGGGC 57.249 42.857 0.00 0.00 38.24 5.19
6233 6630 5.917462 AGAAAAACAAGAATCCAAACAGGG 58.083 37.500 0.00 0.00 38.24 4.45
6234 6631 7.765819 AGAAAGAAAAACAAGAATCCAAACAGG 59.234 33.333 0.00 0.00 39.47 4.00
6235 6632 8.707938 AGAAAGAAAAACAAGAATCCAAACAG 57.292 30.769 0.00 0.00 0.00 3.16
6263 6660 3.275999 GGTGGCGGAAATACAAGTGTAT 58.724 45.455 0.00 0.00 42.60 2.29
6264 6661 2.616001 GGGTGGCGGAAATACAAGTGTA 60.616 50.000 0.00 0.00 34.67 2.90
6265 6662 1.530323 GGTGGCGGAAATACAAGTGT 58.470 50.000 0.00 0.00 0.00 3.55
6266 6663 0.808755 GGGTGGCGGAAATACAAGTG 59.191 55.000 0.00 0.00 0.00 3.16
6267 6664 0.402504 TGGGTGGCGGAAATACAAGT 59.597 50.000 0.00 0.00 0.00 3.16
6268 6665 1.094785 CTGGGTGGCGGAAATACAAG 58.905 55.000 0.00 0.00 0.00 3.16
6269 6666 0.693622 TCTGGGTGGCGGAAATACAA 59.306 50.000 0.00 0.00 0.00 2.41
6270 6667 0.693622 TTCTGGGTGGCGGAAATACA 59.306 50.000 0.00 0.00 0.00 2.29
6271 6668 1.339727 ACTTCTGGGTGGCGGAAATAC 60.340 52.381 0.00 0.00 0.00 1.89
6272 6669 0.988832 ACTTCTGGGTGGCGGAAATA 59.011 50.000 0.00 0.00 0.00 1.40
6273 6670 0.112412 AACTTCTGGGTGGCGGAAAT 59.888 50.000 0.00 0.00 0.00 2.17
6274 6671 0.766131 TAACTTCTGGGTGGCGGAAA 59.234 50.000 0.00 0.00 0.00 3.13
6275 6672 0.766131 TTAACTTCTGGGTGGCGGAA 59.234 50.000 0.00 0.00 0.00 4.30
6276 6673 0.766131 TTTAACTTCTGGGTGGCGGA 59.234 50.000 0.00 0.00 0.00 5.54
6277 6674 1.611519 TTTTAACTTCTGGGTGGCGG 58.388 50.000 0.00 0.00 0.00 6.13
6278 6675 3.754323 TGTATTTTAACTTCTGGGTGGCG 59.246 43.478 0.00 0.00 0.00 5.69
6279 6676 4.082408 GGTGTATTTTAACTTCTGGGTGGC 60.082 45.833 0.00 0.00 0.00 5.01
6280 6677 5.183140 CAGGTGTATTTTAACTTCTGGGTGG 59.817 44.000 0.00 0.00 0.00 4.61
6281 6678 5.768164 ACAGGTGTATTTTAACTTCTGGGTG 59.232 40.000 0.00 0.00 0.00 4.61
6282 6679 5.948842 ACAGGTGTATTTTAACTTCTGGGT 58.051 37.500 0.00 0.00 0.00 4.51
6283 6680 8.458843 CAATACAGGTGTATTTTAACTTCTGGG 58.541 37.037 11.84 0.00 45.90 4.45
6284 6681 9.226606 TCAATACAGGTGTATTTTAACTTCTGG 57.773 33.333 11.84 0.00 45.90 3.86
6293 6690 8.745590 GGTGGTAATTCAATACAGGTGTATTTT 58.254 33.333 11.84 7.72 45.90 1.82
6294 6691 7.891183 TGGTGGTAATTCAATACAGGTGTATTT 59.109 33.333 11.84 2.27 45.90 1.40
6296 6693 6.964464 TGGTGGTAATTCAATACAGGTGTAT 58.036 36.000 0.00 0.00 42.60 2.29
6297 6694 6.375830 TGGTGGTAATTCAATACAGGTGTA 57.624 37.500 0.00 0.00 34.67 2.90
6298 6695 5.249780 TGGTGGTAATTCAATACAGGTGT 57.750 39.130 0.00 0.00 0.00 4.16
6299 6696 6.773976 AATGGTGGTAATTCAATACAGGTG 57.226 37.500 0.00 0.00 0.00 4.00
6300 6697 6.831868 GGTAATGGTGGTAATTCAATACAGGT 59.168 38.462 0.00 0.00 0.00 4.00
6301 6698 6.831353 TGGTAATGGTGGTAATTCAATACAGG 59.169 38.462 0.00 0.00 0.00 4.00
6302 6699 7.201785 GGTGGTAATGGTGGTAATTCAATACAG 60.202 40.741 0.00 0.00 0.00 2.74
6303 6700 6.603997 GGTGGTAATGGTGGTAATTCAATACA 59.396 38.462 0.00 0.00 0.00 2.29
6304 6701 6.603997 TGGTGGTAATGGTGGTAATTCAATAC 59.396 38.462 0.00 0.00 0.00 1.89
6305 6702 6.732487 TGGTGGTAATGGTGGTAATTCAATA 58.268 36.000 0.00 0.00 0.00 1.90
6306 6703 5.584913 TGGTGGTAATGGTGGTAATTCAAT 58.415 37.500 0.00 0.00 0.00 2.57
6307 6704 4.999310 TGGTGGTAATGGTGGTAATTCAA 58.001 39.130 0.00 0.00 0.00 2.69
6308 6705 4.659529 TGGTGGTAATGGTGGTAATTCA 57.340 40.909 0.00 0.00 0.00 2.57
6309 6706 5.533528 GGTATGGTGGTAATGGTGGTAATTC 59.466 44.000 0.00 0.00 0.00 2.17
6310 6707 5.044030 TGGTATGGTGGTAATGGTGGTAATT 60.044 40.000 0.00 0.00 0.00 1.40
6311 6708 4.479056 TGGTATGGTGGTAATGGTGGTAAT 59.521 41.667 0.00 0.00 0.00 1.89
6312 6709 3.850774 TGGTATGGTGGTAATGGTGGTAA 59.149 43.478 0.00 0.00 0.00 2.85
6313 6710 3.461824 TGGTATGGTGGTAATGGTGGTA 58.538 45.455 0.00 0.00 0.00 3.25
6314 6711 2.280103 TGGTATGGTGGTAATGGTGGT 58.720 47.619 0.00 0.00 0.00 4.16
6315 6712 3.287222 CTTGGTATGGTGGTAATGGTGG 58.713 50.000 0.00 0.00 0.00 4.61
6316 6713 2.687935 GCTTGGTATGGTGGTAATGGTG 59.312 50.000 0.00 0.00 0.00 4.17
6317 6714 2.682563 CGCTTGGTATGGTGGTAATGGT 60.683 50.000 0.00 0.00 0.00 3.55
6318 6715 1.946768 CGCTTGGTATGGTGGTAATGG 59.053 52.381 0.00 0.00 0.00 3.16
6319 6716 1.333619 GCGCTTGGTATGGTGGTAATG 59.666 52.381 0.00 0.00 0.00 1.90
6320 6717 1.675552 GCGCTTGGTATGGTGGTAAT 58.324 50.000 0.00 0.00 0.00 1.89
6321 6718 0.741574 CGCGCTTGGTATGGTGGTAA 60.742 55.000 5.56 0.00 0.00 2.85
6322 6719 1.153529 CGCGCTTGGTATGGTGGTA 60.154 57.895 5.56 0.00 0.00 3.25
6323 6720 2.435938 CGCGCTTGGTATGGTGGT 60.436 61.111 5.56 0.00 0.00 4.16
6324 6721 3.202001 CCGCGCTTGGTATGGTGG 61.202 66.667 5.56 0.00 0.00 4.61
6325 6722 3.876198 GCCGCGCTTGGTATGGTG 61.876 66.667 5.56 0.00 0.00 4.17
6327 6724 2.933878 TAAGGCCGCGCTTGGTATGG 62.934 60.000 5.56 0.00 0.00 2.74
6328 6725 1.498865 CTAAGGCCGCGCTTGGTATG 61.499 60.000 5.56 0.00 0.00 2.39
6329 6726 1.227556 CTAAGGCCGCGCTTGGTAT 60.228 57.895 5.56 0.00 0.00 2.73
6330 6727 2.185867 CTAAGGCCGCGCTTGGTA 59.814 61.111 5.56 0.00 0.00 3.25
6331 6728 3.665675 CTCTAAGGCCGCGCTTGGT 62.666 63.158 5.56 0.00 0.00 3.67
6332 6729 2.892425 CTCTAAGGCCGCGCTTGG 60.892 66.667 5.56 0.18 0.00 3.61
6333 6730 2.167861 GTCTCTAAGGCCGCGCTTG 61.168 63.158 5.56 0.00 0.00 4.01
6334 6731 1.889530 AAGTCTCTAAGGCCGCGCTT 61.890 55.000 5.56 1.72 0.00 4.68
6335 6732 2.286127 GAAGTCTCTAAGGCCGCGCT 62.286 60.000 5.56 0.00 0.00 5.92
6336 6733 1.878975 GAAGTCTCTAAGGCCGCGC 60.879 63.158 0.00 0.00 0.00 6.86
6337 6734 1.586564 CGAAGTCTCTAAGGCCGCG 60.587 63.158 0.00 0.00 0.00 6.46
6338 6735 1.878975 GCGAAGTCTCTAAGGCCGC 60.879 63.158 0.00 0.00 0.00 6.53
6339 6736 0.108804 TTGCGAAGTCTCTAAGGCCG 60.109 55.000 0.00 0.00 0.00 6.13
6340 6737 2.094762 TTTGCGAAGTCTCTAAGGCC 57.905 50.000 0.00 0.00 0.00 5.19
6341 6738 3.684788 TCAATTTGCGAAGTCTCTAAGGC 59.315 43.478 0.00 0.00 0.00 4.35
6342 6739 6.980978 TCTATCAATTTGCGAAGTCTCTAAGG 59.019 38.462 0.00 0.00 0.00 2.69
6343 6740 7.993821 TCTATCAATTTGCGAAGTCTCTAAG 57.006 36.000 0.00 0.00 0.00 2.18
6344 6741 8.417106 AGATCTATCAATTTGCGAAGTCTCTAA 58.583 33.333 0.00 0.00 0.00 2.10
6345 6742 7.946207 AGATCTATCAATTTGCGAAGTCTCTA 58.054 34.615 0.00 0.00 0.00 2.43
6346 6743 6.815089 AGATCTATCAATTTGCGAAGTCTCT 58.185 36.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.