Multiple sequence alignment - TraesCS3B01G348900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G348900 chr3B 100.000 3363 0 0 1 3363 559209448 559206086 0.000000e+00 6211.0
1 TraesCS3B01G348900 chr3B 89.600 125 7 5 77 199 807949460 807949580 1.620000e-33 154.0
2 TraesCS3B01G348900 chr3B 86.029 136 10 6 67 196 672528093 672528225 1.630000e-28 137.0
3 TraesCS3B01G348900 chr4B 97.942 2235 37 6 592 2821 28301810 28304040 0.000000e+00 3864.0
4 TraesCS3B01G348900 chr4B 98.553 553 5 3 2812 3363 28304077 28304627 0.000000e+00 974.0
5 TraesCS3B01G348900 chr4B 87.302 126 11 4 76 199 625228198 625228320 4.520000e-29 139.0
6 TraesCS3B01G348900 chrUn 97.897 2235 38 6 592 2821 278721438 278723668 0.000000e+00 3858.0
7 TraesCS3B01G348900 chrUn 97.653 213 3 2 2812 3024 278723705 278723915 6.860000e-97 364.0
8 TraesCS3B01G348900 chr1B 91.410 1560 85 19 592 2147 6352941 6351427 0.000000e+00 2093.0
9 TraesCS3B01G348900 chr1B 94.067 691 32 6 2137 2821 6349795 6349108 0.000000e+00 1040.0
10 TraesCS3B01G348900 chr3A 95.345 1246 47 5 911 2147 192849199 192850442 0.000000e+00 1969.0
11 TraesCS3B01G348900 chr3A 95.766 685 26 2 2137 2821 192852292 192852973 0.000000e+00 1101.0
12 TraesCS3B01G348900 chr3A 90.991 555 20 8 2812 3363 192853010 192853537 0.000000e+00 721.0
13 TraesCS3B01G348900 chr3A 95.906 171 7 0 592 762 192847209 192847379 9.190000e-71 278.0
14 TraesCS3B01G348900 chr3A 93.902 164 7 1 759 922 192847635 192847795 9.320000e-61 244.0
15 TraesCS3B01G348900 chr3A 90.625 128 6 2 290 417 557970065 557970186 7.460000e-37 165.0
16 TraesCS3B01G348900 chr3A 96.000 75 3 0 198 272 557970002 557970076 4.560000e-24 122.0
17 TraesCS3B01G348900 chr3A 97.059 34 0 1 45 77 557969984 557970017 4.690000e-04 56.5
18 TraesCS3B01G348900 chr6D 93.970 1078 40 11 588 1662 133296567 133295512 0.000000e+00 1607.0
19 TraesCS3B01G348900 chr6D 94.485 689 33 3 2137 2821 133293598 133292911 0.000000e+00 1057.0
20 TraesCS3B01G348900 chr6D 91.549 568 29 9 2812 3363 133292874 133292310 0.000000e+00 765.0
21 TraesCS3B01G348900 chr6D 96.648 179 6 0 1955 2133 133295503 133295325 7.050000e-77 298.0
22 TraesCS3B01G348900 chr5B 89.223 566 41 8 2812 3363 673113343 673113902 0.000000e+00 689.0
23 TraesCS3B01G348900 chr5B 93.017 358 21 4 2467 2821 673112950 673113306 1.380000e-143 520.0
24 TraesCS3B01G348900 chr5B 89.804 255 24 2 2234 2486 673111462 673111716 3.240000e-85 326.0
25 TraesCS3B01G348900 chr5A 89.223 566 39 9 2812 3363 364527754 364527197 0.000000e+00 688.0
26 TraesCS3B01G348900 chr5A 93.215 339 20 3 2486 2821 364528129 364527791 2.330000e-136 496.0
27 TraesCS3B01G348900 chr5A 89.370 254 24 3 2234 2484 364529936 364529683 1.950000e-82 316.0
28 TraesCS3B01G348900 chr7D 90.687 451 36 4 2913 3363 397515 397071 2.230000e-166 595.0
29 TraesCS3B01G348900 chr7D 84.602 591 48 16 2237 2821 398243 397690 6.340000e-152 547.0
30 TraesCS3B01G348900 chr7D 79.348 184 20 9 2638 2820 34968320 34968486 2.740000e-21 113.0
31 TraesCS3B01G348900 chr5D 73.635 861 160 35 1012 1847 420603521 420604339 1.540000e-68 270.0
32 TraesCS3B01G348900 chr5D 90.400 125 8 4 79 201 232838417 232838539 9.660000e-36 161.0
33 TraesCS3B01G348900 chr5D 79.191 173 32 4 1681 1851 483980680 483980510 2.120000e-22 117.0
34 TraesCS3B01G348900 chr5D 84.167 120 19 0 1732 1851 483984355 483984236 2.120000e-22 117.0
35 TraesCS3B01G348900 chr1D 83.043 230 38 1 1636 1865 124071289 124071517 1.220000e-49 207.0
36 TraesCS3B01G348900 chr2B 91.406 128 7 4 75 199 157296643 157296517 4.460000e-39 172.0
37 TraesCS3B01G348900 chr4D 90.476 126 9 3 78 201 336940353 336940477 2.680000e-36 163.0
38 TraesCS3B01G348900 chr7B 88.889 126 9 5 77 199 68351220 68351343 2.090000e-32 150.0
39 TraesCS3B01G348900 chr7B 86.992 123 13 3 79 199 76913095 76912974 5.850000e-28 135.0
40 TraesCS3B01G348900 chr7B 83.803 142 17 4 63 199 66413152 66413292 2.720000e-26 130.0
41 TraesCS3B01G348900 chr7B 81.538 130 21 2 1723 1850 74361416 74361288 1.650000e-18 104.0
42 TraesCS3B01G348900 chr3D 100.000 30 0 0 290 319 427779352 427779323 4.690000e-04 56.5
43 TraesCS3B01G348900 chr3D 97.059 34 0 1 45 77 427779433 427779400 4.690000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G348900 chr3B 559206086 559209448 3362 True 6211.000000 6211 100.000000 1 3363 1 chr3B.!!$R1 3362
1 TraesCS3B01G348900 chr4B 28301810 28304627 2817 False 2419.000000 3864 98.247500 592 3363 2 chr4B.!!$F2 2771
2 TraesCS3B01G348900 chrUn 278721438 278723915 2477 False 2111.000000 3858 97.775000 592 3024 2 chrUn.!!$F1 2432
3 TraesCS3B01G348900 chr1B 6349108 6352941 3833 True 1566.500000 2093 92.738500 592 2821 2 chr1B.!!$R1 2229
4 TraesCS3B01G348900 chr3A 192847209 192853537 6328 False 862.600000 1969 94.382000 592 3363 5 chr3A.!!$F1 2771
5 TraesCS3B01G348900 chr6D 133292310 133296567 4257 True 931.750000 1607 94.163000 588 3363 4 chr6D.!!$R1 2775
6 TraesCS3B01G348900 chr5B 673111462 673113902 2440 False 511.666667 689 90.681333 2234 3363 3 chr5B.!!$F1 1129
7 TraesCS3B01G348900 chr5A 364527197 364529936 2739 True 500.000000 688 90.602667 2234 3363 3 chr5A.!!$R1 1129
8 TraesCS3B01G348900 chr7D 397071 398243 1172 True 571.000000 595 87.644500 2237 3363 2 chr7D.!!$R1 1126
9 TraesCS3B01G348900 chr5D 420603521 420604339 818 False 270.000000 270 73.635000 1012 1847 1 chr5D.!!$F2 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.033920 TGTGCGTGCTCTCATCACTT 59.966 50.0 0.00 0.0 33.03 3.16 F
118 119 0.034767 CCTTGGCCTCTGCATCAGAA 60.035 55.0 3.32 0.0 40.18 3.02 F
222 223 0.107508 AATAGCAGATGCACCGCACT 60.108 50.0 7.68 0.0 43.04 4.40 F
496 497 0.112606 TCAGAGTTCTCCACCGTCCT 59.887 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 3577 0.754587 TGCCATTGCCACACAACAGA 60.755 50.0 0.00 0.00 42.27 3.41 R
2084 3797 5.937187 CATTAACGAATGGTTGTGTGATGA 58.063 37.5 0.00 0.00 39.75 2.92 R
2133 3846 0.529773 GTTCACCTGTGAGCACGACA 60.530 55.0 8.96 0.00 41.13 4.35 R
2469 6053 0.706433 ATCCCTGCAGGTGATTGGTT 59.294 50.0 30.63 9.77 36.75 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.267174 ACTGGGCTGCATCATGTATC 57.733 50.000 0.50 0.00 0.00 2.24
20 21 1.773052 ACTGGGCTGCATCATGTATCT 59.227 47.619 0.50 0.00 0.00 1.98
21 22 2.152016 CTGGGCTGCATCATGTATCTG 58.848 52.381 0.50 0.00 0.00 2.90
22 23 1.491754 TGGGCTGCATCATGTATCTGT 59.508 47.619 0.50 0.00 0.00 3.41
23 24 1.878088 GGGCTGCATCATGTATCTGTG 59.122 52.381 0.50 0.00 0.00 3.66
24 25 1.878088 GGCTGCATCATGTATCTGTGG 59.122 52.381 0.50 0.00 0.00 4.17
25 26 1.878088 GCTGCATCATGTATCTGTGGG 59.122 52.381 0.00 0.00 0.00 4.61
26 27 2.486013 GCTGCATCATGTATCTGTGGGA 60.486 50.000 0.00 0.00 0.00 4.37
27 28 3.136763 CTGCATCATGTATCTGTGGGAC 58.863 50.000 0.00 0.00 0.00 4.46
28 29 2.773661 TGCATCATGTATCTGTGGGACT 59.226 45.455 0.00 0.00 0.00 3.85
29 30 3.136763 GCATCATGTATCTGTGGGACTG 58.863 50.000 0.00 0.00 0.00 3.51
30 31 3.432749 GCATCATGTATCTGTGGGACTGT 60.433 47.826 0.00 0.00 0.00 3.55
31 32 3.893326 TCATGTATCTGTGGGACTGTG 57.107 47.619 0.00 0.00 0.00 3.66
32 33 2.093500 TCATGTATCTGTGGGACTGTGC 60.093 50.000 0.00 0.00 0.00 4.57
33 34 0.246360 TGTATCTGTGGGACTGTGCG 59.754 55.000 0.00 0.00 0.00 5.34
34 35 0.246635 GTATCTGTGGGACTGTGCGT 59.753 55.000 0.00 0.00 0.00 5.24
35 36 0.246360 TATCTGTGGGACTGTGCGTG 59.754 55.000 0.00 0.00 0.00 5.34
36 37 3.349006 CTGTGGGACTGTGCGTGC 61.349 66.667 0.00 0.00 0.00 5.34
37 38 3.814615 CTGTGGGACTGTGCGTGCT 62.815 63.158 0.00 0.00 33.95 4.40
38 39 3.044305 GTGGGACTGTGCGTGCTC 61.044 66.667 0.00 0.00 33.95 4.26
39 40 3.233980 TGGGACTGTGCGTGCTCT 61.234 61.111 0.00 0.00 33.95 4.09
40 41 2.433318 GGGACTGTGCGTGCTCTC 60.433 66.667 0.00 0.00 33.95 3.20
41 42 2.340078 GGACTGTGCGTGCTCTCA 59.660 61.111 0.00 0.00 0.00 3.27
42 43 1.079543 GGACTGTGCGTGCTCTCAT 60.080 57.895 0.00 0.00 0.00 2.90
43 44 1.080995 GGACTGTGCGTGCTCTCATC 61.081 60.000 0.00 0.00 0.00 2.92
44 45 0.389037 GACTGTGCGTGCTCTCATCA 60.389 55.000 0.00 0.00 0.00 3.07
45 46 0.668706 ACTGTGCGTGCTCTCATCAC 60.669 55.000 0.00 0.00 32.70 3.06
46 47 0.389556 CTGTGCGTGCTCTCATCACT 60.390 55.000 0.00 0.00 33.03 3.41
47 48 0.033920 TGTGCGTGCTCTCATCACTT 59.966 50.000 0.00 0.00 33.03 3.16
48 49 1.272212 TGTGCGTGCTCTCATCACTTA 59.728 47.619 0.00 0.00 33.03 2.24
49 50 2.288763 TGTGCGTGCTCTCATCACTTAA 60.289 45.455 0.00 0.00 33.03 1.85
50 51 2.346847 GTGCGTGCTCTCATCACTTAAG 59.653 50.000 0.00 0.00 32.54 1.85
51 52 1.325943 GCGTGCTCTCATCACTTAAGC 59.674 52.381 1.29 0.00 32.54 3.09
52 53 1.585668 CGTGCTCTCATCACTTAAGCG 59.414 52.381 1.29 0.00 35.74 4.68
53 54 1.325943 GTGCTCTCATCACTTAAGCGC 59.674 52.381 0.00 0.00 35.74 5.92
54 55 1.066929 TGCTCTCATCACTTAAGCGCA 60.067 47.619 11.47 0.00 35.74 6.09
55 56 2.208431 GCTCTCATCACTTAAGCGCAT 58.792 47.619 11.47 0.00 0.00 4.73
56 57 2.220593 GCTCTCATCACTTAAGCGCATC 59.779 50.000 11.47 0.00 0.00 3.91
57 58 2.799412 CTCTCATCACTTAAGCGCATCC 59.201 50.000 11.47 0.00 0.00 3.51
58 59 1.524355 CTCATCACTTAAGCGCATCCG 59.476 52.381 11.47 0.00 37.57 4.18
59 60 1.134818 TCATCACTTAAGCGCATCCGT 60.135 47.619 11.47 0.00 36.67 4.69
60 61 1.004610 CATCACTTAAGCGCATCCGTG 60.005 52.381 11.47 11.76 36.67 4.94
73 74 3.763097 CATCCGTGCAGAAAAATAGCA 57.237 42.857 0.00 0.00 35.63 3.49
74 75 3.688272 CATCCGTGCAGAAAAATAGCAG 58.312 45.455 0.00 0.00 39.21 4.24
75 76 3.052455 TCCGTGCAGAAAAATAGCAGA 57.948 42.857 0.00 0.00 39.21 4.26
76 77 3.609853 TCCGTGCAGAAAAATAGCAGAT 58.390 40.909 0.00 0.00 39.21 2.90
77 78 4.009675 TCCGTGCAGAAAAATAGCAGATT 58.990 39.130 0.00 0.00 39.21 2.40
78 79 4.458989 TCCGTGCAGAAAAATAGCAGATTT 59.541 37.500 0.00 0.00 39.21 2.17
79 80 5.048083 TCCGTGCAGAAAAATAGCAGATTTT 60.048 36.000 4.07 4.07 39.21 1.82
80 81 5.634859 CCGTGCAGAAAAATAGCAGATTTTT 59.365 36.000 17.27 17.27 42.02 1.94
101 102 3.628832 TTTTGAAAATGGGGGTCTCCT 57.371 42.857 0.00 0.00 35.33 3.69
102 103 3.628832 TTTGAAAATGGGGGTCTCCTT 57.371 42.857 0.00 0.00 35.33 3.36
103 104 2.603075 TGAAAATGGGGGTCTCCTTG 57.397 50.000 0.00 0.00 35.33 3.61
104 105 1.077005 TGAAAATGGGGGTCTCCTTGG 59.923 52.381 0.00 0.00 35.33 3.61
105 106 0.252239 AAAATGGGGGTCTCCTTGGC 60.252 55.000 0.00 0.00 35.33 4.52
106 107 2.168272 AAATGGGGGTCTCCTTGGCC 62.168 60.000 0.00 0.00 40.45 5.36
107 108 3.603330 ATGGGGGTCTCCTTGGCCT 62.603 63.158 3.32 0.00 41.10 5.19
108 109 3.412408 GGGGGTCTCCTTGGCCTC 61.412 72.222 3.32 0.00 41.19 4.70
109 110 2.285743 GGGGTCTCCTTGGCCTCT 60.286 66.667 3.32 0.00 38.09 3.69
110 111 2.674220 GGGGTCTCCTTGGCCTCTG 61.674 68.421 3.32 0.00 38.09 3.35
111 112 2.270527 GGTCTCCTTGGCCTCTGC 59.729 66.667 3.32 0.00 37.49 4.26
112 113 2.596851 GGTCTCCTTGGCCTCTGCA 61.597 63.158 3.32 0.00 40.13 4.41
113 114 1.606531 GTCTCCTTGGCCTCTGCAT 59.393 57.895 3.32 0.00 40.13 3.96
114 115 0.463474 GTCTCCTTGGCCTCTGCATC 60.463 60.000 3.32 0.00 40.13 3.91
115 116 0.911045 TCTCCTTGGCCTCTGCATCA 60.911 55.000 3.32 0.00 40.13 3.07
116 117 0.464013 CTCCTTGGCCTCTGCATCAG 60.464 60.000 3.32 0.00 40.13 2.90
117 118 0.911045 TCCTTGGCCTCTGCATCAGA 60.911 55.000 3.32 0.00 38.25 3.27
118 119 0.034767 CCTTGGCCTCTGCATCAGAA 60.035 55.000 3.32 0.00 40.18 3.02
119 120 1.093159 CTTGGCCTCTGCATCAGAAC 58.907 55.000 3.32 0.00 40.18 3.01
120 121 0.674581 TTGGCCTCTGCATCAGAACG 60.675 55.000 3.32 0.00 40.18 3.95
121 122 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
122 123 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
131 132 3.516681 CATCAGAACGATGCATACAGC 57.483 47.619 0.00 0.00 44.95 4.40
132 133 1.939974 TCAGAACGATGCATACAGCC 58.060 50.000 0.00 0.00 44.83 4.85
133 134 1.206849 TCAGAACGATGCATACAGCCA 59.793 47.619 0.00 0.00 44.83 4.75
134 135 2.009051 CAGAACGATGCATACAGCCAA 58.991 47.619 0.00 0.00 44.83 4.52
135 136 2.419673 CAGAACGATGCATACAGCCAAA 59.580 45.455 0.00 0.00 44.83 3.28
136 137 3.065786 CAGAACGATGCATACAGCCAAAT 59.934 43.478 0.00 0.00 44.83 2.32
137 138 3.696051 AGAACGATGCATACAGCCAAATT 59.304 39.130 0.00 0.00 44.83 1.82
138 139 4.158394 AGAACGATGCATACAGCCAAATTT 59.842 37.500 0.00 0.00 44.83 1.82
139 140 5.356751 AGAACGATGCATACAGCCAAATTTA 59.643 36.000 0.00 0.00 44.83 1.40
140 141 5.772825 ACGATGCATACAGCCAAATTTAT 57.227 34.783 0.00 0.00 44.83 1.40
141 142 6.875948 ACGATGCATACAGCCAAATTTATA 57.124 33.333 0.00 0.00 44.83 0.98
142 143 7.270757 ACGATGCATACAGCCAAATTTATAA 57.729 32.000 0.00 0.00 44.83 0.98
143 144 7.711846 ACGATGCATACAGCCAAATTTATAAA 58.288 30.769 0.00 0.00 44.83 1.40
144 145 8.359642 ACGATGCATACAGCCAAATTTATAAAT 58.640 29.630 0.00 4.81 44.83 1.40
145 146 9.838975 CGATGCATACAGCCAAATTTATAAATA 57.161 29.630 11.07 0.00 44.83 1.40
173 174 9.878599 AATAAGTTCAACAATGTCTTAAAGTCG 57.121 29.630 0.00 0.00 32.60 4.18
174 175 6.300354 AGTTCAACAATGTCTTAAAGTCGG 57.700 37.500 0.00 0.00 0.00 4.79
175 176 6.053005 AGTTCAACAATGTCTTAAAGTCGGA 58.947 36.000 0.00 0.00 0.00 4.55
176 177 6.540914 AGTTCAACAATGTCTTAAAGTCGGAA 59.459 34.615 0.00 0.00 0.00 4.30
177 178 6.928979 TCAACAATGTCTTAAAGTCGGAAA 57.071 33.333 0.00 0.00 0.00 3.13
178 179 6.954944 TCAACAATGTCTTAAAGTCGGAAAG 58.045 36.000 0.00 0.00 0.00 2.62
179 180 5.358298 ACAATGTCTTAAAGTCGGAAAGC 57.642 39.130 0.00 0.00 0.00 3.51
180 181 4.819630 ACAATGTCTTAAAGTCGGAAAGCA 59.180 37.500 0.00 0.00 0.00 3.91
181 182 5.298276 ACAATGTCTTAAAGTCGGAAAGCAA 59.702 36.000 0.00 0.00 0.00 3.91
182 183 6.183360 ACAATGTCTTAAAGTCGGAAAGCAAA 60.183 34.615 0.00 0.00 0.00 3.68
183 184 5.821516 TGTCTTAAAGTCGGAAAGCAAAA 57.178 34.783 0.00 0.00 0.00 2.44
184 185 6.385649 TGTCTTAAAGTCGGAAAGCAAAAT 57.614 33.333 0.00 0.00 0.00 1.82
185 186 7.499321 TGTCTTAAAGTCGGAAAGCAAAATA 57.501 32.000 0.00 0.00 0.00 1.40
186 187 7.932335 TGTCTTAAAGTCGGAAAGCAAAATAA 58.068 30.769 0.00 0.00 0.00 1.40
187 188 8.073768 TGTCTTAAAGTCGGAAAGCAAAATAAG 58.926 33.333 0.00 0.00 0.00 1.73
188 189 7.537649 GTCTTAAAGTCGGAAAGCAAAATAAGG 59.462 37.037 0.00 0.00 0.00 2.69
189 190 3.850122 AGTCGGAAAGCAAAATAAGGC 57.150 42.857 0.00 0.00 0.00 4.35
190 191 2.161609 AGTCGGAAAGCAAAATAAGGCG 59.838 45.455 0.00 0.00 34.54 5.52
191 192 2.160813 GTCGGAAAGCAAAATAAGGCGA 59.839 45.455 0.00 0.00 34.54 5.54
192 193 2.418628 TCGGAAAGCAAAATAAGGCGAG 59.581 45.455 0.00 0.00 34.54 5.03
193 194 2.530177 GGAAAGCAAAATAAGGCGAGC 58.470 47.619 0.00 0.00 34.54 5.03
194 195 2.164422 GGAAAGCAAAATAAGGCGAGCT 59.836 45.455 0.00 0.00 34.54 4.09
195 196 3.430008 GAAAGCAAAATAAGGCGAGCTC 58.570 45.455 2.73 2.73 34.54 4.09
196 197 2.113860 AGCAAAATAAGGCGAGCTCA 57.886 45.000 15.40 0.00 34.54 4.26
197 198 1.740025 AGCAAAATAAGGCGAGCTCAC 59.260 47.619 15.40 3.30 34.54 3.51
198 199 1.468520 GCAAAATAAGGCGAGCTCACA 59.531 47.619 15.40 0.00 0.00 3.58
199 200 2.476854 GCAAAATAAGGCGAGCTCACAG 60.477 50.000 15.40 0.00 0.00 3.66
200 201 3.002791 CAAAATAAGGCGAGCTCACAGA 58.997 45.455 15.40 0.00 0.00 3.41
201 202 3.334583 AAATAAGGCGAGCTCACAGAA 57.665 42.857 15.40 0.00 0.00 3.02
202 203 3.334583 AATAAGGCGAGCTCACAGAAA 57.665 42.857 15.40 0.00 0.00 2.52
203 204 2.831685 TAAGGCGAGCTCACAGAAAA 57.168 45.000 15.40 0.00 0.00 2.29
204 205 1.967319 AAGGCGAGCTCACAGAAAAA 58.033 45.000 15.40 0.00 0.00 1.94
205 206 2.191128 AGGCGAGCTCACAGAAAAAT 57.809 45.000 15.40 0.00 0.00 1.82
206 207 3.334583 AGGCGAGCTCACAGAAAAATA 57.665 42.857 15.40 0.00 0.00 1.40
207 208 3.265791 AGGCGAGCTCACAGAAAAATAG 58.734 45.455 15.40 0.00 0.00 1.73
208 209 2.223135 GGCGAGCTCACAGAAAAATAGC 60.223 50.000 15.40 3.89 0.00 2.97
209 210 2.416547 GCGAGCTCACAGAAAAATAGCA 59.583 45.455 15.40 0.00 35.63 3.49
210 211 3.484886 GCGAGCTCACAGAAAAATAGCAG 60.485 47.826 15.40 0.00 35.63 4.24
211 212 3.928992 CGAGCTCACAGAAAAATAGCAGA 59.071 43.478 15.40 0.00 35.63 4.26
212 213 4.569966 CGAGCTCACAGAAAAATAGCAGAT 59.430 41.667 15.40 0.00 35.63 2.90
213 214 5.502058 CGAGCTCACAGAAAAATAGCAGATG 60.502 44.000 15.40 0.00 35.63 2.90
214 215 4.096081 AGCTCACAGAAAAATAGCAGATGC 59.904 41.667 0.00 0.00 42.49 3.91
215 216 4.142534 GCTCACAGAAAAATAGCAGATGCA 60.143 41.667 7.68 0.00 45.16 3.96
216 217 5.300969 TCACAGAAAAATAGCAGATGCAC 57.699 39.130 7.68 0.00 45.16 4.57
217 218 4.156556 TCACAGAAAAATAGCAGATGCACC 59.843 41.667 7.68 0.00 45.16 5.01
218 219 3.127548 ACAGAAAAATAGCAGATGCACCG 59.872 43.478 7.68 0.00 45.16 4.94
219 220 2.098117 AGAAAAATAGCAGATGCACCGC 59.902 45.455 7.68 0.00 45.16 5.68
220 221 1.462616 AAAATAGCAGATGCACCGCA 58.537 45.000 7.68 0.00 45.16 5.69
221 222 0.734889 AAATAGCAGATGCACCGCAC 59.265 50.000 7.68 0.00 43.04 5.34
222 223 0.107508 AATAGCAGATGCACCGCACT 60.108 50.000 7.68 0.00 43.04 4.40
223 224 0.812811 ATAGCAGATGCACCGCACTG 60.813 55.000 7.68 11.64 43.04 3.66
224 225 2.857575 TAGCAGATGCACCGCACTGG 62.858 60.000 7.68 0.00 43.04 4.00
225 226 2.046988 CAGATGCACCGCACTGGA 60.047 61.111 0.00 0.00 43.04 3.86
226 227 1.450848 CAGATGCACCGCACTGGAT 60.451 57.895 0.00 0.00 43.04 3.41
227 228 1.153289 AGATGCACCGCACTGGATC 60.153 57.895 0.00 4.45 43.04 3.36
228 229 1.153289 GATGCACCGCACTGGATCT 60.153 57.895 0.00 0.00 43.04 2.75
229 230 1.434622 GATGCACCGCACTGGATCTG 61.435 60.000 0.00 0.00 43.04 2.90
230 231 3.503363 GCACCGCACTGGATCTGC 61.503 66.667 0.00 0.00 42.00 4.26
231 232 2.046988 CACCGCACTGGATCTGCA 60.047 61.111 6.28 0.00 42.00 4.41
232 233 1.450848 CACCGCACTGGATCTGCAT 60.451 57.895 6.28 0.00 42.00 3.96
233 234 1.153289 ACCGCACTGGATCTGCATC 60.153 57.895 6.28 0.00 42.00 3.91
240 241 2.031768 GGATCTGCATCCGGCCTC 59.968 66.667 0.00 0.00 43.89 4.70
241 242 2.356793 GATCTGCATCCGGCCTCG 60.357 66.667 0.00 0.00 43.89 4.63
242 243 3.157217 GATCTGCATCCGGCCTCGT 62.157 63.158 0.00 0.00 43.89 4.18
243 244 3.451556 ATCTGCATCCGGCCTCGTG 62.452 63.158 0.00 0.00 43.89 4.35
244 245 4.457496 CTGCATCCGGCCTCGTGT 62.457 66.667 0.00 0.00 43.89 4.49
245 246 3.071837 TGCATCCGGCCTCGTGTA 61.072 61.111 0.00 0.00 43.89 2.90
246 247 2.279517 GCATCCGGCCTCGTGTAG 60.280 66.667 0.00 0.00 36.11 2.74
247 248 2.782222 GCATCCGGCCTCGTGTAGA 61.782 63.158 0.00 0.00 36.11 2.59
248 249 1.813859 CATCCGGCCTCGTGTAGAA 59.186 57.895 0.00 0.00 33.95 2.10
249 250 0.249073 CATCCGGCCTCGTGTAGAAG 60.249 60.000 0.00 0.00 33.95 2.85
250 251 0.395311 ATCCGGCCTCGTGTAGAAGA 60.395 55.000 0.00 0.00 33.95 2.87
251 252 0.609957 TCCGGCCTCGTGTAGAAGAA 60.610 55.000 0.00 0.00 33.95 2.52
252 253 0.458025 CCGGCCTCGTGTAGAAGAAC 60.458 60.000 0.00 0.00 33.95 3.01
253 254 0.797249 CGGCCTCGTGTAGAAGAACG 60.797 60.000 0.00 0.00 41.11 3.95
254 255 0.524862 GGCCTCGTGTAGAAGAACGA 59.475 55.000 0.00 0.00 45.86 3.85
255 256 1.134560 GGCCTCGTGTAGAAGAACGAT 59.865 52.381 0.00 0.00 46.70 3.73
256 257 2.452105 GCCTCGTGTAGAAGAACGATC 58.548 52.381 0.00 0.00 46.70 3.69
257 258 2.795331 GCCTCGTGTAGAAGAACGATCC 60.795 54.545 0.00 0.00 46.70 3.36
258 259 2.539142 CCTCGTGTAGAAGAACGATCCG 60.539 54.545 0.00 0.00 46.70 4.18
259 260 1.399440 TCGTGTAGAAGAACGATCCGG 59.601 52.381 0.00 0.00 43.40 5.14
260 261 1.399440 CGTGTAGAAGAACGATCCGGA 59.601 52.381 6.61 6.61 42.32 5.14
261 262 2.033049 CGTGTAGAAGAACGATCCGGAT 59.967 50.000 19.21 19.21 42.32 4.18
262 263 3.372954 GTGTAGAAGAACGATCCGGATG 58.627 50.000 24.82 16.41 0.00 3.51
263 264 2.361119 TGTAGAAGAACGATCCGGATGG 59.639 50.000 24.82 24.00 0.00 3.51
274 275 2.668144 TCCGGATGGACCAAAGTTTT 57.332 45.000 0.00 0.00 40.17 2.43
275 276 2.952116 TCCGGATGGACCAAAGTTTTT 58.048 42.857 0.00 0.00 40.17 1.94
299 300 6.603940 TTTTATTGAGGGAATGGACCAAAG 57.396 37.500 0.00 0.00 0.00 2.77
300 301 3.833559 ATTGAGGGAATGGACCAAAGT 57.166 42.857 0.00 0.00 0.00 2.66
301 302 2.584835 TGAGGGAATGGACCAAAGTG 57.415 50.000 0.00 0.00 0.00 3.16
302 303 1.780309 TGAGGGAATGGACCAAAGTGT 59.220 47.619 0.00 0.00 0.00 3.55
303 304 2.176798 TGAGGGAATGGACCAAAGTGTT 59.823 45.455 0.00 0.00 0.00 3.32
304 305 3.230976 GAGGGAATGGACCAAAGTGTTT 58.769 45.455 0.00 0.00 0.00 2.83
305 306 2.965147 AGGGAATGGACCAAAGTGTTTG 59.035 45.455 0.00 0.00 40.32 2.93
306 307 2.547855 GGGAATGGACCAAAGTGTTTGC 60.548 50.000 0.00 0.00 39.31 3.68
307 308 2.102252 GGAATGGACCAAAGTGTTTGCA 59.898 45.455 0.00 0.00 39.31 4.08
308 309 3.383761 GAATGGACCAAAGTGTTTGCAG 58.616 45.455 0.00 0.00 39.31 4.41
309 310 1.110442 TGGACCAAAGTGTTTGCAGG 58.890 50.000 0.00 0.00 39.31 4.85
310 311 1.111277 GGACCAAAGTGTTTGCAGGT 58.889 50.000 0.00 0.00 39.31 4.00
311 312 1.202405 GGACCAAAGTGTTTGCAGGTG 60.202 52.381 0.00 0.00 39.31 4.00
312 313 0.175531 ACCAAAGTGTTTGCAGGTGC 59.824 50.000 0.00 0.00 39.31 5.01
324 325 4.275508 AGGTGCAGGCCTGTGGTG 62.276 66.667 32.81 9.78 37.50 4.17
331 332 4.365111 GGCCTGTGGTGCCCATGA 62.365 66.667 0.00 0.00 43.33 3.07
332 333 2.283101 GCCTGTGGTGCCCATGAA 60.283 61.111 0.00 0.00 35.28 2.57
333 334 1.907807 GCCTGTGGTGCCCATGAAA 60.908 57.895 0.00 0.00 35.28 2.69
334 335 1.880819 GCCTGTGGTGCCCATGAAAG 61.881 60.000 0.00 0.00 35.28 2.62
335 336 1.588082 CTGTGGTGCCCATGAAAGC 59.412 57.895 0.00 0.00 35.28 3.51
336 337 2.203972 CTGTGGTGCCCATGAAAGCG 62.204 60.000 0.00 0.00 35.28 4.68
337 338 3.372730 TGGTGCCCATGAAAGCGC 61.373 61.111 0.00 0.00 38.78 5.92
338 339 3.372730 GGTGCCCATGAAAGCGCA 61.373 61.111 11.47 0.00 41.28 6.09
339 340 2.126346 GTGCCCATGAAAGCGCAC 60.126 61.111 11.47 0.51 44.17 5.34
340 341 3.736100 TGCCCATGAAAGCGCACG 61.736 61.111 11.47 0.00 0.00 5.34
354 355 2.433145 CACGCGTGCACTGATCCT 60.433 61.111 28.16 0.00 0.00 3.24
355 356 2.125912 ACGCGTGCACTGATCCTC 60.126 61.111 12.93 0.00 0.00 3.71
356 357 2.887568 CGCGTGCACTGATCCTCC 60.888 66.667 16.19 0.00 0.00 4.30
357 358 2.887568 GCGTGCACTGATCCTCCG 60.888 66.667 16.19 0.00 0.00 4.63
358 359 2.887568 CGTGCACTGATCCTCCGC 60.888 66.667 16.19 0.00 0.00 5.54
359 360 2.512515 GTGCACTGATCCTCCGCC 60.513 66.667 10.32 0.00 0.00 6.13
360 361 4.147449 TGCACTGATCCTCCGCCG 62.147 66.667 0.00 0.00 0.00 6.46
361 362 4.148825 GCACTGATCCTCCGCCGT 62.149 66.667 0.00 0.00 0.00 5.68
362 363 2.782222 GCACTGATCCTCCGCCGTA 61.782 63.158 0.00 0.00 0.00 4.02
363 364 1.360551 CACTGATCCTCCGCCGTAG 59.639 63.158 0.00 0.00 0.00 3.51
364 365 2.336809 CTGATCCTCCGCCGTAGC 59.663 66.667 0.00 0.00 0.00 3.58
410 411 4.803426 GGACGGACTCTGCGGCAG 62.803 72.222 23.72 23.72 42.78 4.85
411 412 4.803426 GACGGACTCTGCGGCAGG 62.803 72.222 28.18 20.58 39.78 4.85
413 414 4.069232 CGGACTCTGCGGCAGGAA 62.069 66.667 28.18 10.54 31.51 3.36
414 415 2.347490 GGACTCTGCGGCAGGAAA 59.653 61.111 28.18 9.79 31.51 3.13
415 416 2.035442 GGACTCTGCGGCAGGAAAC 61.035 63.158 28.18 16.71 31.51 2.78
416 417 1.004440 GACTCTGCGGCAGGAAACT 60.004 57.895 28.18 7.69 46.44 2.66
443 444 1.946521 CATTATGCATGCGAGCGAAG 58.053 50.000 14.09 0.00 37.31 3.79
480 481 3.114616 CCGCGACCTGCAACTCAG 61.115 66.667 8.23 0.00 46.97 3.35
481 482 2.049156 CGCGACCTGCAACTCAGA 60.049 61.111 0.00 0.00 45.72 3.27
482 483 2.091112 CGCGACCTGCAACTCAGAG 61.091 63.158 0.00 0.00 45.72 3.35
483 484 1.005630 GCGACCTGCAACTCAGAGT 60.006 57.895 0.00 0.00 45.72 3.24
484 485 0.601311 GCGACCTGCAACTCAGAGTT 60.601 55.000 10.27 10.27 45.72 3.01
485 486 1.423395 CGACCTGCAACTCAGAGTTC 58.577 55.000 13.27 8.93 45.72 3.01
486 487 1.000283 CGACCTGCAACTCAGAGTTCT 60.000 52.381 13.27 0.00 45.72 3.01
487 488 2.682836 GACCTGCAACTCAGAGTTCTC 58.317 52.381 13.27 8.71 45.72 2.87
488 489 1.346068 ACCTGCAACTCAGAGTTCTCC 59.654 52.381 13.27 5.64 45.72 3.71
489 490 1.345741 CCTGCAACTCAGAGTTCTCCA 59.654 52.381 13.27 9.66 45.72 3.86
490 491 2.411904 CTGCAACTCAGAGTTCTCCAC 58.588 52.381 13.27 1.96 45.72 4.02
491 492 1.070758 TGCAACTCAGAGTTCTCCACC 59.929 52.381 13.27 0.00 36.03 4.61
492 493 1.937108 GCAACTCAGAGTTCTCCACCG 60.937 57.143 13.27 1.72 36.03 4.94
493 494 1.341531 CAACTCAGAGTTCTCCACCGT 59.658 52.381 13.27 0.00 36.03 4.83
494 495 1.249407 ACTCAGAGTTCTCCACCGTC 58.751 55.000 0.00 0.00 0.00 4.79
495 496 0.528470 CTCAGAGTTCTCCACCGTCC 59.472 60.000 0.00 0.00 0.00 4.79
496 497 0.112606 TCAGAGTTCTCCACCGTCCT 59.887 55.000 0.00 0.00 0.00 3.85
497 498 0.528470 CAGAGTTCTCCACCGTCCTC 59.472 60.000 0.00 0.00 0.00 3.71
498 499 0.961358 AGAGTTCTCCACCGTCCTCG 60.961 60.000 0.00 0.00 0.00 4.63
499 500 2.126031 GTTCTCCACCGTCCTCGC 60.126 66.667 0.00 0.00 35.54 5.03
500 501 2.599281 TTCTCCACCGTCCTCGCA 60.599 61.111 0.00 0.00 35.54 5.10
501 502 2.204461 TTCTCCACCGTCCTCGCAA 61.204 57.895 0.00 0.00 35.54 4.85
502 503 1.750341 TTCTCCACCGTCCTCGCAAA 61.750 55.000 0.00 0.00 35.54 3.68
503 504 1.301401 CTCCACCGTCCTCGCAAAA 60.301 57.895 0.00 0.00 35.54 2.44
504 505 0.882927 CTCCACCGTCCTCGCAAAAA 60.883 55.000 0.00 0.00 35.54 1.94
530 531 6.992063 AAAAGAGGTAACATCATGCTACAG 57.008 37.500 0.72 0.00 41.41 2.74
531 532 5.683876 AAGAGGTAACATCATGCTACAGT 57.316 39.130 0.72 0.00 41.41 3.55
532 533 5.683876 AGAGGTAACATCATGCTACAGTT 57.316 39.130 0.72 0.00 41.41 3.16
533 534 6.791867 AGAGGTAACATCATGCTACAGTTA 57.208 37.500 0.72 0.00 41.41 2.24
534 535 6.574350 AGAGGTAACATCATGCTACAGTTAC 58.426 40.000 0.72 0.00 42.13 2.50
535 536 6.154534 AGAGGTAACATCATGCTACAGTTACA 59.845 38.462 18.34 0.00 43.71 2.41
536 537 6.707290 AGGTAACATCATGCTACAGTTACAA 58.293 36.000 18.34 0.00 43.71 2.41
537 538 7.338710 AGGTAACATCATGCTACAGTTACAAT 58.661 34.615 18.34 9.86 43.71 2.71
538 539 7.280876 AGGTAACATCATGCTACAGTTACAATG 59.719 37.037 18.34 5.19 43.71 2.82
539 540 6.441093 AACATCATGCTACAGTTACAATGG 57.559 37.500 0.00 0.00 0.00 3.16
540 541 5.744171 ACATCATGCTACAGTTACAATGGA 58.256 37.500 0.00 0.00 0.00 3.41
541 542 6.359804 ACATCATGCTACAGTTACAATGGAT 58.640 36.000 0.00 0.00 0.00 3.41
542 543 6.261603 ACATCATGCTACAGTTACAATGGATG 59.738 38.462 0.00 0.00 0.00 3.51
543 544 5.125356 TCATGCTACAGTTACAATGGATGG 58.875 41.667 0.00 0.00 0.00 3.51
544 545 4.835284 TGCTACAGTTACAATGGATGGA 57.165 40.909 0.00 0.00 0.00 3.41
545 546 5.372343 TGCTACAGTTACAATGGATGGAT 57.628 39.130 0.00 0.00 0.00 3.41
546 547 5.125356 TGCTACAGTTACAATGGATGGATG 58.875 41.667 0.00 0.00 0.00 3.51
547 548 5.104569 TGCTACAGTTACAATGGATGGATGA 60.105 40.000 0.00 0.00 0.00 2.92
548 549 5.468072 GCTACAGTTACAATGGATGGATGAG 59.532 44.000 0.00 0.00 0.00 2.90
549 550 4.202441 ACAGTTACAATGGATGGATGAGC 58.798 43.478 0.00 0.00 0.00 4.26
550 551 3.249320 CAGTTACAATGGATGGATGAGCG 59.751 47.826 0.00 0.00 0.00 5.03
551 552 3.134623 AGTTACAATGGATGGATGAGCGA 59.865 43.478 0.00 0.00 0.00 4.93
552 553 2.715749 ACAATGGATGGATGAGCGAA 57.284 45.000 0.00 0.00 0.00 4.70
553 554 2.292267 ACAATGGATGGATGAGCGAAC 58.708 47.619 0.00 0.00 0.00 3.95
554 555 2.291365 CAATGGATGGATGAGCGAACA 58.709 47.619 0.00 0.00 0.00 3.18
555 556 2.251409 ATGGATGGATGAGCGAACAG 57.749 50.000 0.00 0.00 0.00 3.16
556 557 0.904649 TGGATGGATGAGCGAACAGT 59.095 50.000 0.00 0.00 0.00 3.55
557 558 2.107366 TGGATGGATGAGCGAACAGTA 58.893 47.619 0.00 0.00 0.00 2.74
558 559 2.159099 TGGATGGATGAGCGAACAGTAC 60.159 50.000 0.00 0.00 0.00 2.73
559 560 2.474816 GATGGATGAGCGAACAGTACC 58.525 52.381 0.00 0.00 0.00 3.34
560 561 0.172578 TGGATGAGCGAACAGTACCG 59.827 55.000 0.00 0.00 0.00 4.02
569 570 2.635444 CGAACAGTACCGCAAAAGTTG 58.365 47.619 0.00 0.00 0.00 3.16
570 571 2.031191 CGAACAGTACCGCAAAAGTTGT 59.969 45.455 0.00 0.00 0.00 3.32
571 572 3.614588 GAACAGTACCGCAAAAGTTGTC 58.385 45.455 0.00 0.00 0.00 3.18
572 573 1.944709 ACAGTACCGCAAAAGTTGTCC 59.055 47.619 0.00 0.00 0.00 4.02
573 574 1.944024 CAGTACCGCAAAAGTTGTCCA 59.056 47.619 0.00 0.00 0.00 4.02
574 575 2.032030 CAGTACCGCAAAAGTTGTCCAG 60.032 50.000 0.00 0.00 0.00 3.86
575 576 1.265905 GTACCGCAAAAGTTGTCCAGG 59.734 52.381 0.00 0.00 0.00 4.45
576 577 1.007387 CCGCAAAAGTTGTCCAGGC 60.007 57.895 0.00 0.00 0.00 4.85
577 578 1.732917 CGCAAAAGTTGTCCAGGCA 59.267 52.632 0.00 0.00 0.00 4.75
578 579 0.594796 CGCAAAAGTTGTCCAGGCAC 60.595 55.000 0.00 0.00 0.00 5.01
579 580 0.459489 GCAAAAGTTGTCCAGGCACA 59.541 50.000 0.00 0.00 0.00 4.57
580 581 1.069049 GCAAAAGTTGTCCAGGCACAT 59.931 47.619 0.00 0.00 0.00 3.21
581 582 2.483538 GCAAAAGTTGTCCAGGCACATT 60.484 45.455 0.00 0.00 0.00 2.71
582 583 3.125316 CAAAAGTTGTCCAGGCACATTG 58.875 45.455 0.00 0.00 0.00 2.82
583 584 2.363306 AAGTTGTCCAGGCACATTGA 57.637 45.000 0.00 0.00 0.00 2.57
584 585 2.592102 AGTTGTCCAGGCACATTGAT 57.408 45.000 0.00 0.00 0.00 2.57
585 586 3.719268 AGTTGTCCAGGCACATTGATA 57.281 42.857 0.00 0.00 0.00 2.15
586 587 3.347216 AGTTGTCCAGGCACATTGATAC 58.653 45.455 0.00 0.00 0.00 2.24
587 588 3.081061 GTTGTCCAGGCACATTGATACA 58.919 45.455 0.00 0.00 0.00 2.29
588 589 3.431673 TGTCCAGGCACATTGATACAA 57.568 42.857 0.00 0.00 0.00 2.41
589 590 3.081061 TGTCCAGGCACATTGATACAAC 58.919 45.455 0.00 0.00 0.00 3.32
590 591 2.095853 GTCCAGGCACATTGATACAACG 59.904 50.000 0.00 0.00 0.00 4.10
979 2657 1.000827 CTATCCTTCGAGACGCTGCAT 60.001 52.381 0.00 0.00 0.00 3.96
1584 3290 0.316442 CGTTGTGCAGTCTGCTTGTG 60.316 55.000 24.76 8.10 45.31 3.33
2012 3725 2.594592 GCAACACCCGGACTTGCT 60.595 61.111 18.26 0.00 37.82 3.91
2133 3846 1.373812 GTGGCGGGAAGGTGTACTT 59.626 57.895 0.00 0.00 43.65 2.24
2228 5810 4.223700 ACTCAGCTACTTCACATGATTCCA 59.776 41.667 0.00 0.00 0.00 3.53
2469 6053 4.215399 CAGAATGAAAACGAAAGCCTGGTA 59.785 41.667 0.00 0.00 39.69 3.25
2541 7800 3.006323 AGCAAGAAGTACAGACTGACAGG 59.994 47.826 10.08 0.00 35.52 4.00
2762 8034 6.151144 ACTCCATGTTGAAAATGCTACCTTAC 59.849 38.462 0.00 0.00 0.00 2.34
3057 8415 5.122239 CCTCTTACGAAATTGCTTGACATCA 59.878 40.000 0.00 0.00 0.00 3.07
3184 8551 8.624776 CCTGTTAGTTTGATTTTCAGACTCTTT 58.375 33.333 4.19 0.00 40.45 2.52
3200 8567 3.072476 ACTCTTTGAAAGGGATCCGTCAA 59.928 43.478 12.49 16.21 33.09 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.152016 CAGATACATGATGCAGCCCAG 58.848 52.381 0.00 0.00 0.00 4.45
2 3 1.491754 ACAGATACATGATGCAGCCCA 59.508 47.619 0.00 0.00 0.00 5.36
6 7 3.136763 GTCCCACAGATACATGATGCAG 58.863 50.000 0.00 0.00 0.00 4.41
7 8 2.773661 AGTCCCACAGATACATGATGCA 59.226 45.455 0.00 0.00 0.00 3.96
8 9 3.136763 CAGTCCCACAGATACATGATGC 58.863 50.000 0.00 0.00 0.00 3.91
9 10 4.124970 CACAGTCCCACAGATACATGATG 58.875 47.826 0.00 0.00 0.00 3.07
10 11 3.432749 GCACAGTCCCACAGATACATGAT 60.433 47.826 0.00 0.00 0.00 2.45
11 12 2.093500 GCACAGTCCCACAGATACATGA 60.093 50.000 0.00 0.00 0.00 3.07
12 13 2.283298 GCACAGTCCCACAGATACATG 58.717 52.381 0.00 0.00 0.00 3.21
13 14 1.134699 CGCACAGTCCCACAGATACAT 60.135 52.381 0.00 0.00 0.00 2.29
14 15 0.246360 CGCACAGTCCCACAGATACA 59.754 55.000 0.00 0.00 0.00 2.29
15 16 0.246635 ACGCACAGTCCCACAGATAC 59.753 55.000 0.00 0.00 0.00 2.24
16 17 0.246360 CACGCACAGTCCCACAGATA 59.754 55.000 0.00 0.00 0.00 1.98
17 18 1.004560 CACGCACAGTCCCACAGAT 60.005 57.895 0.00 0.00 0.00 2.90
18 19 2.421314 CACGCACAGTCCCACAGA 59.579 61.111 0.00 0.00 0.00 3.41
19 20 3.349006 GCACGCACAGTCCCACAG 61.349 66.667 0.00 0.00 0.00 3.66
20 21 3.807631 GAGCACGCACAGTCCCACA 62.808 63.158 0.00 0.00 0.00 4.17
21 22 3.044305 GAGCACGCACAGTCCCAC 61.044 66.667 0.00 0.00 0.00 4.61
22 23 3.226429 GAGAGCACGCACAGTCCCA 62.226 63.158 0.00 0.00 0.00 4.37
23 24 2.433318 GAGAGCACGCACAGTCCC 60.433 66.667 0.00 0.00 0.00 4.46
24 25 1.079543 ATGAGAGCACGCACAGTCC 60.080 57.895 0.00 0.00 0.00 3.85
25 26 0.389037 TGATGAGAGCACGCACAGTC 60.389 55.000 0.00 0.00 0.00 3.51
26 27 0.668706 GTGATGAGAGCACGCACAGT 60.669 55.000 0.00 0.00 34.55 3.55
27 28 0.389556 AGTGATGAGAGCACGCACAG 60.390 55.000 0.00 0.00 41.04 3.66
28 29 0.033920 AAGTGATGAGAGCACGCACA 59.966 50.000 0.00 0.00 41.04 4.57
29 30 1.996292 TAAGTGATGAGAGCACGCAC 58.004 50.000 0.00 0.00 41.04 5.34
30 31 2.610433 CTTAAGTGATGAGAGCACGCA 58.390 47.619 0.00 0.00 41.04 5.24
31 32 1.325943 GCTTAAGTGATGAGAGCACGC 59.674 52.381 4.02 0.00 41.04 5.34
32 33 1.585668 CGCTTAAGTGATGAGAGCACG 59.414 52.381 10.63 0.00 41.04 5.34
33 34 1.325943 GCGCTTAAGTGATGAGAGCAC 59.674 52.381 20.10 0.00 39.70 4.40
34 35 1.066929 TGCGCTTAAGTGATGAGAGCA 60.067 47.619 20.10 1.25 45.68 4.26
35 36 1.645034 TGCGCTTAAGTGATGAGAGC 58.355 50.000 20.10 0.00 40.23 4.09
36 37 2.799412 GGATGCGCTTAAGTGATGAGAG 59.201 50.000 20.10 0.00 0.00 3.20
37 38 2.799562 CGGATGCGCTTAAGTGATGAGA 60.800 50.000 20.10 0.00 0.00 3.27
38 39 1.524355 CGGATGCGCTTAAGTGATGAG 59.476 52.381 20.10 2.84 0.00 2.90
39 40 1.134818 ACGGATGCGCTTAAGTGATGA 60.135 47.619 20.10 2.95 0.00 2.92
40 41 1.004610 CACGGATGCGCTTAAGTGATG 60.005 52.381 20.10 6.12 0.00 3.07
41 42 1.290203 CACGGATGCGCTTAAGTGAT 58.710 50.000 20.10 9.94 0.00 3.06
42 43 1.358725 GCACGGATGCGCTTAAGTGA 61.359 55.000 24.69 5.52 43.33 3.41
43 44 1.060937 GCACGGATGCGCTTAAGTG 59.939 57.895 19.48 19.48 43.33 3.16
44 45 3.486263 GCACGGATGCGCTTAAGT 58.514 55.556 9.73 2.95 43.33 2.24
53 54 3.374988 TCTGCTATTTTTCTGCACGGATG 59.625 43.478 0.00 0.00 32.91 3.51
54 55 3.609853 TCTGCTATTTTTCTGCACGGAT 58.390 40.909 0.00 0.00 32.91 4.18
55 56 3.052455 TCTGCTATTTTTCTGCACGGA 57.948 42.857 0.00 0.00 32.91 4.69
56 57 4.361451 AATCTGCTATTTTTCTGCACGG 57.639 40.909 0.00 0.00 32.91 4.94
57 58 6.695292 AAAAATCTGCTATTTTTCTGCACG 57.305 33.333 13.82 0.00 36.76 5.34
80 81 3.935172 AGGAGACCCCCATTTTCAAAAA 58.065 40.909 0.00 0.00 34.66 1.94
81 82 3.628832 AGGAGACCCCCATTTTCAAAA 57.371 42.857 0.00 0.00 34.66 2.44
82 83 3.238597 CAAGGAGACCCCCATTTTCAAA 58.761 45.455 0.00 0.00 34.66 2.69
83 84 2.492567 CCAAGGAGACCCCCATTTTCAA 60.493 50.000 0.00 0.00 34.66 2.69
84 85 1.077005 CCAAGGAGACCCCCATTTTCA 59.923 52.381 0.00 0.00 34.66 2.69
85 86 1.852633 CCAAGGAGACCCCCATTTTC 58.147 55.000 0.00 0.00 34.66 2.29
86 87 0.252239 GCCAAGGAGACCCCCATTTT 60.252 55.000 0.00 0.00 34.66 1.82
87 88 1.388133 GCCAAGGAGACCCCCATTT 59.612 57.895 0.00 0.00 34.66 2.32
88 89 2.626467 GGCCAAGGAGACCCCCATT 61.626 63.158 0.00 0.00 34.66 3.16
89 90 3.023735 GGCCAAGGAGACCCCCAT 61.024 66.667 0.00 0.00 34.66 4.00
90 91 4.285790 AGGCCAAGGAGACCCCCA 62.286 66.667 5.01 0.00 34.66 4.96
91 92 3.412408 GAGGCCAAGGAGACCCCC 61.412 72.222 5.01 0.00 34.66 5.40
92 93 2.285743 AGAGGCCAAGGAGACCCC 60.286 66.667 5.01 0.00 0.00 4.95
93 94 2.993853 CAGAGGCCAAGGAGACCC 59.006 66.667 5.01 0.00 0.00 4.46
94 95 1.919600 ATGCAGAGGCCAAGGAGACC 61.920 60.000 5.01 0.00 40.13 3.85
95 96 0.463474 GATGCAGAGGCCAAGGAGAC 60.463 60.000 5.01 0.00 40.13 3.36
96 97 0.911045 TGATGCAGAGGCCAAGGAGA 60.911 55.000 5.01 0.00 40.13 3.71
97 98 0.464013 CTGATGCAGAGGCCAAGGAG 60.464 60.000 5.01 0.00 40.13 3.69
98 99 0.911045 TCTGATGCAGAGGCCAAGGA 60.911 55.000 5.01 0.00 35.39 3.36
99 100 0.034767 TTCTGATGCAGAGGCCAAGG 60.035 55.000 5.01 0.00 41.75 3.61
100 101 1.093159 GTTCTGATGCAGAGGCCAAG 58.907 55.000 5.01 0.00 41.75 3.61
101 102 0.674581 CGTTCTGATGCAGAGGCCAA 60.675 55.000 5.01 0.00 41.75 4.52
102 103 1.078918 CGTTCTGATGCAGAGGCCA 60.079 57.895 5.01 0.00 41.75 5.36
103 104 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
104 105 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
112 113 2.158914 TGGCTGTATGCATCGTTCTGAT 60.159 45.455 0.19 0.00 45.15 2.90
113 114 1.206849 TGGCTGTATGCATCGTTCTGA 59.793 47.619 0.19 0.00 45.15 3.27
114 115 1.655484 TGGCTGTATGCATCGTTCTG 58.345 50.000 0.19 0.00 45.15 3.02
115 116 2.401583 TTGGCTGTATGCATCGTTCT 57.598 45.000 0.19 0.00 45.15 3.01
116 117 3.698029 ATTTGGCTGTATGCATCGTTC 57.302 42.857 0.19 0.00 45.15 3.95
117 118 4.454728 AAATTTGGCTGTATGCATCGTT 57.545 36.364 0.19 0.00 45.15 3.85
118 119 5.772825 ATAAATTTGGCTGTATGCATCGT 57.227 34.783 0.19 0.00 45.15 3.73
119 120 8.746922 ATTTATAAATTTGGCTGTATGCATCG 57.253 30.769 0.19 0.00 45.15 3.84
147 148 9.878599 CGACTTTAAGACATTGTTGAACTTATT 57.121 29.630 0.00 0.00 31.38 1.40
148 149 8.504005 CCGACTTTAAGACATTGTTGAACTTAT 58.496 33.333 0.00 0.00 31.38 1.73
149 150 7.711772 TCCGACTTTAAGACATTGTTGAACTTA 59.288 33.333 0.00 0.00 0.00 2.24
150 151 6.540914 TCCGACTTTAAGACATTGTTGAACTT 59.459 34.615 0.00 0.00 0.00 2.66
151 152 6.053005 TCCGACTTTAAGACATTGTTGAACT 58.947 36.000 0.00 0.00 0.00 3.01
152 153 6.295039 TCCGACTTTAAGACATTGTTGAAC 57.705 37.500 0.00 0.00 0.00 3.18
153 154 6.928979 TTCCGACTTTAAGACATTGTTGAA 57.071 33.333 0.00 0.00 0.00 2.69
154 155 6.512741 GCTTTCCGACTTTAAGACATTGTTGA 60.513 38.462 0.00 0.00 0.00 3.18
155 156 5.625311 GCTTTCCGACTTTAAGACATTGTTG 59.375 40.000 0.00 0.00 0.00 3.33
156 157 5.298276 TGCTTTCCGACTTTAAGACATTGTT 59.702 36.000 0.00 0.00 0.00 2.83
157 158 4.819630 TGCTTTCCGACTTTAAGACATTGT 59.180 37.500 0.00 0.00 0.00 2.71
158 159 5.356882 TGCTTTCCGACTTTAAGACATTG 57.643 39.130 0.00 0.00 0.00 2.82
159 160 6.385649 TTTGCTTTCCGACTTTAAGACATT 57.614 33.333 0.00 0.00 0.00 2.71
160 161 6.385649 TTTTGCTTTCCGACTTTAAGACAT 57.614 33.333 0.00 0.00 0.00 3.06
161 162 5.821516 TTTTGCTTTCCGACTTTAAGACA 57.178 34.783 0.00 0.00 0.00 3.41
162 163 7.537649 CCTTATTTTGCTTTCCGACTTTAAGAC 59.462 37.037 0.00 0.00 0.00 3.01
163 164 7.590279 CCTTATTTTGCTTTCCGACTTTAAGA 58.410 34.615 0.00 0.00 0.00 2.10
164 165 6.308041 GCCTTATTTTGCTTTCCGACTTTAAG 59.692 38.462 0.00 0.00 0.00 1.85
165 166 6.153756 GCCTTATTTTGCTTTCCGACTTTAA 58.846 36.000 0.00 0.00 0.00 1.52
166 167 5.618195 CGCCTTATTTTGCTTTCCGACTTTA 60.618 40.000 0.00 0.00 0.00 1.85
167 168 4.556233 GCCTTATTTTGCTTTCCGACTTT 58.444 39.130 0.00 0.00 0.00 2.66
168 169 3.365969 CGCCTTATTTTGCTTTCCGACTT 60.366 43.478 0.00 0.00 0.00 3.01
169 170 2.161609 CGCCTTATTTTGCTTTCCGACT 59.838 45.455 0.00 0.00 0.00 4.18
170 171 2.160813 TCGCCTTATTTTGCTTTCCGAC 59.839 45.455 0.00 0.00 0.00 4.79
171 172 2.418628 CTCGCCTTATTTTGCTTTCCGA 59.581 45.455 0.00 0.00 0.00 4.55
172 173 2.785679 CTCGCCTTATTTTGCTTTCCG 58.214 47.619 0.00 0.00 0.00 4.30
173 174 2.164422 AGCTCGCCTTATTTTGCTTTCC 59.836 45.455 0.00 0.00 0.00 3.13
174 175 3.119849 TGAGCTCGCCTTATTTTGCTTTC 60.120 43.478 9.64 0.00 0.00 2.62
175 176 2.819608 TGAGCTCGCCTTATTTTGCTTT 59.180 40.909 9.64 0.00 0.00 3.51
176 177 2.162408 GTGAGCTCGCCTTATTTTGCTT 59.838 45.455 16.69 0.00 0.00 3.91
177 178 1.740025 GTGAGCTCGCCTTATTTTGCT 59.260 47.619 16.69 0.00 0.00 3.91
178 179 1.468520 TGTGAGCTCGCCTTATTTTGC 59.531 47.619 23.96 0.00 0.00 3.68
179 180 3.002791 TCTGTGAGCTCGCCTTATTTTG 58.997 45.455 23.96 4.91 0.00 2.44
180 181 3.334583 TCTGTGAGCTCGCCTTATTTT 57.665 42.857 23.96 0.00 0.00 1.82
181 182 3.334583 TTCTGTGAGCTCGCCTTATTT 57.665 42.857 23.96 0.00 0.00 1.40
182 183 3.334583 TTTCTGTGAGCTCGCCTTATT 57.665 42.857 23.96 0.00 0.00 1.40
183 184 3.334583 TTTTCTGTGAGCTCGCCTTAT 57.665 42.857 23.96 0.00 0.00 1.73
184 185 2.831685 TTTTCTGTGAGCTCGCCTTA 57.168 45.000 23.96 6.99 0.00 2.69
185 186 1.967319 TTTTTCTGTGAGCTCGCCTT 58.033 45.000 23.96 0.00 0.00 4.35
186 187 2.191128 ATTTTTCTGTGAGCTCGCCT 57.809 45.000 23.96 0.00 0.00 5.52
187 188 2.223135 GCTATTTTTCTGTGAGCTCGCC 60.223 50.000 23.96 10.40 0.00 5.54
188 189 2.416547 TGCTATTTTTCTGTGAGCTCGC 59.583 45.455 20.51 20.51 34.19 5.03
189 190 3.928992 TCTGCTATTTTTCTGTGAGCTCG 59.071 43.478 9.64 0.00 34.19 5.03
190 191 5.730010 GCATCTGCTATTTTTCTGTGAGCTC 60.730 44.000 6.82 6.82 38.21 4.09
191 192 4.096081 GCATCTGCTATTTTTCTGTGAGCT 59.904 41.667 0.00 0.00 38.21 4.09
192 193 4.142534 TGCATCTGCTATTTTTCTGTGAGC 60.143 41.667 3.53 0.00 42.66 4.26
193 194 5.330295 GTGCATCTGCTATTTTTCTGTGAG 58.670 41.667 3.53 0.00 42.66 3.51
194 195 4.156556 GGTGCATCTGCTATTTTTCTGTGA 59.843 41.667 3.53 0.00 42.66 3.58
195 196 4.418392 GGTGCATCTGCTATTTTTCTGTG 58.582 43.478 3.53 0.00 42.66 3.66
196 197 3.127548 CGGTGCATCTGCTATTTTTCTGT 59.872 43.478 3.53 0.00 42.66 3.41
197 198 3.688272 CGGTGCATCTGCTATTTTTCTG 58.312 45.455 3.53 0.00 42.66 3.02
198 199 2.098117 GCGGTGCATCTGCTATTTTTCT 59.902 45.455 11.41 0.00 44.39 2.52
199 200 2.454055 GCGGTGCATCTGCTATTTTTC 58.546 47.619 11.41 0.00 44.39 2.29
200 201 2.566952 GCGGTGCATCTGCTATTTTT 57.433 45.000 11.41 0.00 44.39 1.94
208 209 1.434622 GATCCAGTGCGGTGCATCTG 61.435 60.000 0.00 11.73 41.91 2.90
209 210 1.153289 GATCCAGTGCGGTGCATCT 60.153 57.895 0.00 0.00 41.91 2.90
210 211 1.153289 AGATCCAGTGCGGTGCATC 60.153 57.895 0.00 0.00 41.91 3.91
211 212 1.450848 CAGATCCAGTGCGGTGCAT 60.451 57.895 0.00 0.00 41.91 3.96
212 213 2.046988 CAGATCCAGTGCGGTGCA 60.047 61.111 0.00 0.00 35.60 4.57
213 214 3.503363 GCAGATCCAGTGCGGTGC 61.503 66.667 0.00 0.00 35.57 5.01
214 215 1.434622 GATGCAGATCCAGTGCGGTG 61.435 60.000 0.00 0.00 44.35 4.94
215 216 1.153289 GATGCAGATCCAGTGCGGT 60.153 57.895 0.00 0.00 44.35 5.68
216 217 1.890979 GGATGCAGATCCAGTGCGG 60.891 63.158 1.24 0.00 46.93 5.69
217 218 3.728474 GGATGCAGATCCAGTGCG 58.272 61.111 1.24 0.00 46.93 5.34
223 224 2.031768 GAGGCCGGATGCAGATCC 59.968 66.667 5.05 0.00 44.54 3.36
224 225 2.356793 CGAGGCCGGATGCAGATC 60.357 66.667 5.05 0.00 43.89 2.75
225 226 3.157252 ACGAGGCCGGATGCAGAT 61.157 61.111 5.05 0.00 43.89 2.90
226 227 4.147449 CACGAGGCCGGATGCAGA 62.147 66.667 5.05 0.00 43.89 4.26
227 228 2.960957 CTACACGAGGCCGGATGCAG 62.961 65.000 5.05 0.00 43.89 4.41
228 229 3.071837 TACACGAGGCCGGATGCA 61.072 61.111 5.05 0.00 43.89 3.96
229 230 2.279517 CTACACGAGGCCGGATGC 60.280 66.667 5.05 0.00 40.78 3.91
230 231 0.249073 CTTCTACACGAGGCCGGATG 60.249 60.000 5.05 0.00 40.78 3.51
231 232 0.395311 TCTTCTACACGAGGCCGGAT 60.395 55.000 5.05 0.00 40.78 4.18
232 233 0.609957 TTCTTCTACACGAGGCCGGA 60.610 55.000 5.05 0.00 40.78 5.14
233 234 0.458025 GTTCTTCTACACGAGGCCGG 60.458 60.000 0.00 0.00 40.78 6.13
234 235 0.797249 CGTTCTTCTACACGAGGCCG 60.797 60.000 0.00 0.00 38.76 6.13
235 236 0.524862 TCGTTCTTCTACACGAGGCC 59.475 55.000 0.00 0.00 40.43 5.19
240 241 1.399440 TCCGGATCGTTCTTCTACACG 59.601 52.381 0.00 0.00 37.77 4.49
241 242 3.372954 CATCCGGATCGTTCTTCTACAC 58.627 50.000 15.88 0.00 0.00 2.90
242 243 2.361119 CCATCCGGATCGTTCTTCTACA 59.639 50.000 15.88 0.00 0.00 2.74
243 244 2.621998 TCCATCCGGATCGTTCTTCTAC 59.378 50.000 15.88 0.00 35.91 2.59
244 245 2.621998 GTCCATCCGGATCGTTCTTCTA 59.378 50.000 15.88 0.00 45.33 2.10
245 246 1.409427 GTCCATCCGGATCGTTCTTCT 59.591 52.381 15.88 0.00 45.33 2.85
246 247 1.538419 GGTCCATCCGGATCGTTCTTC 60.538 57.143 15.88 1.11 45.33 2.87
247 248 0.464452 GGTCCATCCGGATCGTTCTT 59.536 55.000 15.88 0.00 45.33 2.52
248 249 0.686441 TGGTCCATCCGGATCGTTCT 60.686 55.000 15.88 0.00 46.61 3.01
249 250 0.177141 TTGGTCCATCCGGATCGTTC 59.823 55.000 15.88 6.24 46.61 3.95
250 251 0.616371 TTTGGTCCATCCGGATCGTT 59.384 50.000 15.88 0.00 46.61 3.85
251 252 0.178068 CTTTGGTCCATCCGGATCGT 59.822 55.000 15.88 0.00 46.61 3.73
252 253 0.178068 ACTTTGGTCCATCCGGATCG 59.822 55.000 15.88 8.71 46.61 3.69
253 254 2.420058 AACTTTGGTCCATCCGGATC 57.580 50.000 15.88 3.63 45.33 3.36
254 255 2.899303 AAACTTTGGTCCATCCGGAT 57.101 45.000 12.38 12.38 45.33 4.18
255 256 2.668144 AAAACTTTGGTCCATCCGGA 57.332 45.000 6.61 6.61 39.79 5.14
275 276 6.556874 ACTTTGGTCCATTCCCTCAATAAAAA 59.443 34.615 0.00 0.00 0.00 1.94
276 277 6.014669 CACTTTGGTCCATTCCCTCAATAAAA 60.015 38.462 0.00 0.00 0.00 1.52
277 278 5.480073 CACTTTGGTCCATTCCCTCAATAAA 59.520 40.000 0.00 0.00 0.00 1.40
278 279 5.016173 CACTTTGGTCCATTCCCTCAATAA 58.984 41.667 0.00 0.00 0.00 1.40
279 280 4.044065 ACACTTTGGTCCATTCCCTCAATA 59.956 41.667 0.00 0.00 0.00 1.90
280 281 3.181418 ACACTTTGGTCCATTCCCTCAAT 60.181 43.478 0.00 0.00 0.00 2.57
281 282 2.176798 ACACTTTGGTCCATTCCCTCAA 59.823 45.455 0.00 0.00 0.00 3.02
282 283 1.780309 ACACTTTGGTCCATTCCCTCA 59.220 47.619 0.00 0.00 0.00 3.86
283 284 2.586648 ACACTTTGGTCCATTCCCTC 57.413 50.000 0.00 0.00 0.00 4.30
284 285 2.965147 CAAACACTTTGGTCCATTCCCT 59.035 45.455 0.00 0.00 37.01 4.20
285 286 2.547855 GCAAACACTTTGGTCCATTCCC 60.548 50.000 0.00 0.00 40.94 3.97
286 287 2.102252 TGCAAACACTTTGGTCCATTCC 59.898 45.455 0.00 0.00 40.94 3.01
287 288 3.383761 CTGCAAACACTTTGGTCCATTC 58.616 45.455 0.00 0.00 40.94 2.67
288 289 2.102925 CCTGCAAACACTTTGGTCCATT 59.897 45.455 0.00 0.00 40.94 3.16
289 290 1.688197 CCTGCAAACACTTTGGTCCAT 59.312 47.619 0.00 0.00 40.94 3.41
290 291 1.110442 CCTGCAAACACTTTGGTCCA 58.890 50.000 0.00 0.00 40.94 4.02
291 292 1.111277 ACCTGCAAACACTTTGGTCC 58.889 50.000 0.00 0.00 40.94 4.46
292 293 1.802508 GCACCTGCAAACACTTTGGTC 60.803 52.381 0.00 0.00 40.94 4.02
293 294 0.175531 GCACCTGCAAACACTTTGGT 59.824 50.000 0.00 0.00 40.94 3.67
294 295 2.976271 GCACCTGCAAACACTTTGG 58.024 52.632 0.00 0.00 40.94 3.28
307 308 4.275508 CACCACAGGCCTGCACCT 62.276 66.667 33.06 10.62 42.30 4.00
325 326 4.817063 CGCGTGCGCTTTCATGGG 62.817 66.667 9.73 0.00 39.32 4.00
326 327 4.088762 ACGCGTGCGCTTTCATGG 62.089 61.111 12.93 0.00 44.19 3.66
327 328 2.866510 CACGCGTGCGCTTTCATG 60.867 61.111 28.16 0.00 44.19 3.07
337 338 2.433145 AGGATCAGTGCACGCGTG 60.433 61.111 34.01 34.01 0.00 5.34
338 339 2.125912 GAGGATCAGTGCACGCGT 60.126 61.111 5.58 5.58 33.17 6.01
339 340 2.887568 GGAGGATCAGTGCACGCG 60.888 66.667 12.01 3.53 36.25 6.01
340 341 2.887568 CGGAGGATCAGTGCACGC 60.888 66.667 12.01 2.32 36.25 5.34
341 342 2.887568 GCGGAGGATCAGTGCACG 60.888 66.667 12.01 6.78 36.25 5.34
342 343 2.512515 GGCGGAGGATCAGTGCAC 60.513 66.667 9.40 9.40 36.25 4.57
343 344 4.147449 CGGCGGAGGATCAGTGCA 62.147 66.667 0.00 0.00 36.25 4.57
344 345 2.685387 CTACGGCGGAGGATCAGTGC 62.685 65.000 12.38 0.00 36.25 4.40
345 346 1.360551 CTACGGCGGAGGATCAGTG 59.639 63.158 12.38 0.00 36.25 3.66
346 347 2.491022 GCTACGGCGGAGGATCAGT 61.491 63.158 22.54 0.00 36.25 3.41
347 348 2.336809 GCTACGGCGGAGGATCAG 59.663 66.667 22.54 0.00 36.25 2.90
385 386 3.139469 GAGTCCGTCCCGAGTCCC 61.139 72.222 0.00 0.00 0.00 4.46
386 387 2.045143 AGAGTCCGTCCCGAGTCC 60.045 66.667 0.00 0.00 33.38 3.85
387 388 3.053849 GCAGAGTCCGTCCCGAGTC 62.054 68.421 0.00 0.00 33.14 3.36
388 389 3.063084 GCAGAGTCCGTCCCGAGT 61.063 66.667 0.00 0.00 0.00 4.18
389 390 4.180946 CGCAGAGTCCGTCCCGAG 62.181 72.222 0.00 0.00 0.00 4.63
393 394 4.803426 CTGCCGCAGAGTCCGTCC 62.803 72.222 15.74 0.00 32.44 4.79
394 395 4.803426 CCTGCCGCAGAGTCCGTC 62.803 72.222 22.35 0.00 32.44 4.79
396 397 3.589654 TTTCCTGCCGCAGAGTCCG 62.590 63.158 22.35 4.60 32.44 4.79
397 398 2.035442 GTTTCCTGCCGCAGAGTCC 61.035 63.158 22.35 3.35 32.44 3.85
398 399 1.004440 AGTTTCCTGCCGCAGAGTC 60.004 57.895 22.35 8.94 32.44 3.36
399 400 1.302033 CAGTTTCCTGCCGCAGAGT 60.302 57.895 22.35 1.90 32.44 3.24
400 401 0.603707 TTCAGTTTCCTGCCGCAGAG 60.604 55.000 22.35 11.76 38.66 3.35
401 402 0.179032 TTTCAGTTTCCTGCCGCAGA 60.179 50.000 22.35 5.23 38.66 4.26
402 403 0.667993 TTTTCAGTTTCCTGCCGCAG 59.332 50.000 13.82 13.82 38.66 5.18
403 404 1.000385 CATTTTCAGTTTCCTGCCGCA 60.000 47.619 0.00 0.00 38.66 5.69
404 405 1.701704 CATTTTCAGTTTCCTGCCGC 58.298 50.000 0.00 0.00 38.66 6.53
405 406 1.000385 TGCATTTTCAGTTTCCTGCCG 60.000 47.619 0.00 0.00 38.66 5.69
406 407 2.818130 TGCATTTTCAGTTTCCTGCC 57.182 45.000 0.00 0.00 38.66 4.85
407 408 5.220529 GCATAATGCATTTTCAGTTTCCTGC 60.221 40.000 18.75 1.83 44.26 4.85
408 409 6.340537 GCATAATGCATTTTCAGTTTCCTG 57.659 37.500 18.75 0.00 44.26 3.86
424 425 1.946521 CTTCGCTCGCATGCATAATG 58.053 50.000 19.57 0.14 39.49 1.90
425 426 0.236711 GCTTCGCTCGCATGCATAAT 59.763 50.000 19.57 0.00 0.00 1.28
426 427 1.643292 GCTTCGCTCGCATGCATAA 59.357 52.632 19.57 1.03 0.00 1.90
427 428 2.588585 CGCTTCGCTCGCATGCATA 61.589 57.895 19.57 3.82 0.00 3.14
428 429 3.933498 CGCTTCGCTCGCATGCAT 61.933 61.111 19.57 0.00 0.00 3.96
429 430 3.980546 TACGCTTCGCTCGCATGCA 62.981 57.895 19.57 4.02 0.00 3.96
430 431 3.254654 TACGCTTCGCTCGCATGC 61.255 61.111 7.91 7.91 0.00 4.06
431 432 2.615618 GTACGCTTCGCTCGCATG 59.384 61.111 0.00 0.00 0.00 4.06
432 433 2.582498 GGTACGCTTCGCTCGCAT 60.582 61.111 0.00 0.00 0.00 4.73
433 434 2.829043 AATGGTACGCTTCGCTCGCA 62.829 55.000 0.00 0.00 0.00 5.10
434 435 1.693083 AAATGGTACGCTTCGCTCGC 61.693 55.000 0.00 0.00 0.00 5.03
435 436 0.719465 AAAATGGTACGCTTCGCTCG 59.281 50.000 0.00 0.00 0.00 5.03
436 437 2.894307 AAAAATGGTACGCTTCGCTC 57.106 45.000 0.00 0.00 0.00 5.03
463 464 3.114616 CTGAGTTGCAGGTCGCGG 61.115 66.667 6.13 0.00 46.97 6.46
464 465 2.049156 TCTGAGTTGCAGGTCGCG 60.049 61.111 0.00 0.00 46.97 5.87
465 466 0.601311 AACTCTGAGTTGCAGGTCGC 60.601 55.000 21.47 0.00 44.98 5.19
466 467 1.000283 AGAACTCTGAGTTGCAGGTCG 60.000 52.381 26.47 0.00 44.98 4.79
467 468 2.611722 GGAGAACTCTGAGTTGCAGGTC 60.612 54.545 26.47 11.75 44.98 3.85
468 469 1.346068 GGAGAACTCTGAGTTGCAGGT 59.654 52.381 26.47 2.22 44.98 4.00
469 470 1.345741 TGGAGAACTCTGAGTTGCAGG 59.654 52.381 26.47 0.00 44.98 4.85
470 471 2.411904 GTGGAGAACTCTGAGTTGCAG 58.588 52.381 26.47 0.00 46.31 4.41
471 472 1.070758 GGTGGAGAACTCTGAGTTGCA 59.929 52.381 26.47 13.14 38.80 4.08
472 473 1.802069 GGTGGAGAACTCTGAGTTGC 58.198 55.000 26.47 17.20 38.80 4.17
473 474 1.341531 ACGGTGGAGAACTCTGAGTTG 59.658 52.381 26.47 12.94 38.80 3.16
474 475 1.614413 GACGGTGGAGAACTCTGAGTT 59.386 52.381 22.20 22.20 41.95 3.01
475 476 1.249407 GACGGTGGAGAACTCTGAGT 58.751 55.000 4.06 4.06 0.00 3.41
476 477 0.528470 GGACGGTGGAGAACTCTGAG 59.472 60.000 2.45 2.45 0.00 3.35
477 478 0.112606 AGGACGGTGGAGAACTCTGA 59.887 55.000 1.86 0.00 0.00 3.27
478 479 0.528470 GAGGACGGTGGAGAACTCTG 59.472 60.000 1.86 0.00 0.00 3.35
479 480 0.961358 CGAGGACGGTGGAGAACTCT 60.961 60.000 1.86 0.00 35.72 3.24
480 481 1.507174 CGAGGACGGTGGAGAACTC 59.493 63.158 0.00 0.00 35.72 3.01
481 482 2.637383 GCGAGGACGGTGGAGAACT 61.637 63.158 0.00 0.00 40.15 3.01
482 483 2.126031 GCGAGGACGGTGGAGAAC 60.126 66.667 0.00 0.00 40.15 3.01
483 484 1.750341 TTTGCGAGGACGGTGGAGAA 61.750 55.000 0.00 0.00 40.15 2.87
484 485 1.750341 TTTTGCGAGGACGGTGGAGA 61.750 55.000 0.00 0.00 40.15 3.71
485 486 0.882927 TTTTTGCGAGGACGGTGGAG 60.883 55.000 0.00 0.00 40.15 3.86
486 487 1.146485 TTTTTGCGAGGACGGTGGA 59.854 52.632 0.00 0.00 40.15 4.02
487 488 3.739167 TTTTTGCGAGGACGGTGG 58.261 55.556 0.00 0.00 40.15 4.61
506 507 6.942576 ACTGTAGCATGATGTTACCTCTTTTT 59.057 34.615 15.33 0.00 33.82 1.94
507 508 6.476378 ACTGTAGCATGATGTTACCTCTTTT 58.524 36.000 15.33 0.00 33.82 2.27
508 509 6.054860 ACTGTAGCATGATGTTACCTCTTT 57.945 37.500 15.33 0.00 33.82 2.52
509 510 5.683876 ACTGTAGCATGATGTTACCTCTT 57.316 39.130 15.33 0.00 33.82 2.85
510 511 5.683876 AACTGTAGCATGATGTTACCTCT 57.316 39.130 15.33 0.00 33.82 3.69
511 512 6.338146 TGTAACTGTAGCATGATGTTACCTC 58.662 40.000 15.33 4.12 40.99 3.85
512 513 6.294361 TGTAACTGTAGCATGATGTTACCT 57.706 37.500 15.33 4.55 40.99 3.08
513 514 6.978343 TTGTAACTGTAGCATGATGTTACC 57.022 37.500 15.33 2.24 40.99 2.85
514 515 7.279981 TCCATTGTAACTGTAGCATGATGTTAC 59.720 37.037 11.83 11.83 41.63 2.50
515 516 7.334858 TCCATTGTAACTGTAGCATGATGTTA 58.665 34.615 0.00 0.00 0.00 2.41
516 517 6.179756 TCCATTGTAACTGTAGCATGATGTT 58.820 36.000 0.00 0.00 0.00 2.71
517 518 5.744171 TCCATTGTAACTGTAGCATGATGT 58.256 37.500 0.00 0.00 0.00 3.06
518 519 6.293790 CCATCCATTGTAACTGTAGCATGATG 60.294 42.308 0.00 0.00 0.00 3.07
519 520 5.766670 CCATCCATTGTAACTGTAGCATGAT 59.233 40.000 0.00 0.00 0.00 2.45
520 521 5.104569 TCCATCCATTGTAACTGTAGCATGA 60.105 40.000 0.00 0.00 0.00 3.07
521 522 5.125356 TCCATCCATTGTAACTGTAGCATG 58.875 41.667 0.00 0.00 0.00 4.06
522 523 5.372343 TCCATCCATTGTAACTGTAGCAT 57.628 39.130 0.00 0.00 0.00 3.79
523 524 4.835284 TCCATCCATTGTAACTGTAGCA 57.165 40.909 0.00 0.00 0.00 3.49
524 525 5.368145 TCATCCATCCATTGTAACTGTAGC 58.632 41.667 0.00 0.00 0.00 3.58
525 526 5.468072 GCTCATCCATCCATTGTAACTGTAG 59.532 44.000 0.00 0.00 0.00 2.74
526 527 5.368145 GCTCATCCATCCATTGTAACTGTA 58.632 41.667 0.00 0.00 0.00 2.74
527 528 4.202441 GCTCATCCATCCATTGTAACTGT 58.798 43.478 0.00 0.00 0.00 3.55
528 529 3.249320 CGCTCATCCATCCATTGTAACTG 59.751 47.826 0.00 0.00 0.00 3.16
529 530 3.134623 TCGCTCATCCATCCATTGTAACT 59.865 43.478 0.00 0.00 0.00 2.24
530 531 3.466836 TCGCTCATCCATCCATTGTAAC 58.533 45.455 0.00 0.00 0.00 2.50
531 532 3.836365 TCGCTCATCCATCCATTGTAA 57.164 42.857 0.00 0.00 0.00 2.41
532 533 3.118445 TGTTCGCTCATCCATCCATTGTA 60.118 43.478 0.00 0.00 0.00 2.41
533 534 2.292267 GTTCGCTCATCCATCCATTGT 58.708 47.619 0.00 0.00 0.00 2.71
534 535 2.289820 CTGTTCGCTCATCCATCCATTG 59.710 50.000 0.00 0.00 0.00 2.82
535 536 2.092753 ACTGTTCGCTCATCCATCCATT 60.093 45.455 0.00 0.00 0.00 3.16
536 537 1.487976 ACTGTTCGCTCATCCATCCAT 59.512 47.619 0.00 0.00 0.00 3.41
537 538 0.904649 ACTGTTCGCTCATCCATCCA 59.095 50.000 0.00 0.00 0.00 3.41
538 539 2.474816 GTACTGTTCGCTCATCCATCC 58.525 52.381 0.00 0.00 0.00 3.51
539 540 2.474816 GGTACTGTTCGCTCATCCATC 58.525 52.381 0.00 0.00 0.00 3.51
540 541 1.202417 CGGTACTGTTCGCTCATCCAT 60.202 52.381 0.00 0.00 0.00 3.41
541 542 0.172578 CGGTACTGTTCGCTCATCCA 59.827 55.000 0.00 0.00 0.00 3.41
542 543 2.959275 CGGTACTGTTCGCTCATCC 58.041 57.895 0.00 0.00 0.00 3.51
549 550 2.031191 ACAACTTTTGCGGTACTGTTCG 59.969 45.455 3.10 0.00 0.00 3.95
550 551 3.547413 GGACAACTTTTGCGGTACTGTTC 60.547 47.826 3.10 0.00 0.00 3.18
551 552 2.356695 GGACAACTTTTGCGGTACTGTT 59.643 45.455 3.10 0.00 0.00 3.16
552 553 1.944709 GGACAACTTTTGCGGTACTGT 59.055 47.619 3.10 0.00 0.00 3.55
553 554 1.944024 TGGACAACTTTTGCGGTACTG 59.056 47.619 0.00 0.00 0.00 2.74
554 555 2.218603 CTGGACAACTTTTGCGGTACT 58.781 47.619 0.00 0.00 0.00 2.73
555 556 1.265905 CCTGGACAACTTTTGCGGTAC 59.734 52.381 0.00 0.00 0.00 3.34
556 557 1.600023 CCTGGACAACTTTTGCGGTA 58.400 50.000 0.00 0.00 0.00 4.02
557 558 1.734388 GCCTGGACAACTTTTGCGGT 61.734 55.000 0.00 0.00 0.00 5.68
558 559 1.007387 GCCTGGACAACTTTTGCGG 60.007 57.895 0.00 0.00 0.00 5.69
559 560 0.594796 GTGCCTGGACAACTTTTGCG 60.595 55.000 0.00 0.00 0.00 4.85
560 561 0.459489 TGTGCCTGGACAACTTTTGC 59.541 50.000 0.00 0.00 0.00 3.68
561 562 3.125316 CAATGTGCCTGGACAACTTTTG 58.875 45.455 0.00 0.00 0.00 2.44
562 563 3.030291 TCAATGTGCCTGGACAACTTTT 58.970 40.909 0.00 0.00 0.00 2.27
563 564 2.665165 TCAATGTGCCTGGACAACTTT 58.335 42.857 0.00 0.00 0.00 2.66
564 565 2.363306 TCAATGTGCCTGGACAACTT 57.637 45.000 0.00 0.00 0.00 2.66
565 566 2.592102 ATCAATGTGCCTGGACAACT 57.408 45.000 0.00 0.00 0.00 3.16
566 567 3.081061 TGTATCAATGTGCCTGGACAAC 58.919 45.455 0.00 0.00 0.00 3.32
567 568 3.431673 TGTATCAATGTGCCTGGACAA 57.568 42.857 0.00 0.00 0.00 3.18
568 569 3.081061 GTTGTATCAATGTGCCTGGACA 58.919 45.455 0.00 0.00 0.00 4.02
569 570 2.095853 CGTTGTATCAATGTGCCTGGAC 59.904 50.000 0.00 0.00 0.00 4.02
570 571 2.355197 CGTTGTATCAATGTGCCTGGA 58.645 47.619 0.00 0.00 0.00 3.86
571 572 1.401552 CCGTTGTATCAATGTGCCTGG 59.598 52.381 0.00 0.00 0.00 4.45
572 573 2.352651 CTCCGTTGTATCAATGTGCCTG 59.647 50.000 0.00 0.00 0.00 4.85
573 574 2.632377 CTCCGTTGTATCAATGTGCCT 58.368 47.619 0.00 0.00 0.00 4.75
574 575 1.064060 GCTCCGTTGTATCAATGTGCC 59.936 52.381 0.00 0.00 0.00 5.01
575 576 1.267532 CGCTCCGTTGTATCAATGTGC 60.268 52.381 0.00 0.00 0.00 4.57
576 577 1.327460 CCGCTCCGTTGTATCAATGTG 59.673 52.381 0.00 0.00 0.00 3.21
577 578 1.651987 CCGCTCCGTTGTATCAATGT 58.348 50.000 0.00 0.00 0.00 2.71
578 579 0.304705 GCCGCTCCGTTGTATCAATG 59.695 55.000 0.00 0.00 0.00 2.82
579 580 1.151777 CGCCGCTCCGTTGTATCAAT 61.152 55.000 0.00 0.00 0.00 2.57
580 581 1.807981 CGCCGCTCCGTTGTATCAA 60.808 57.895 0.00 0.00 0.00 2.57
581 582 2.011741 ATCGCCGCTCCGTTGTATCA 62.012 55.000 0.00 0.00 0.00 2.15
582 583 1.299926 ATCGCCGCTCCGTTGTATC 60.300 57.895 0.00 0.00 0.00 2.24
583 584 1.591594 CATCGCCGCTCCGTTGTAT 60.592 57.895 0.00 0.00 0.00 2.29
584 585 2.202690 CATCGCCGCTCCGTTGTA 60.203 61.111 0.00 0.00 0.00 2.41
586 587 2.971428 ATACCATCGCCGCTCCGTTG 62.971 60.000 0.00 0.00 0.00 4.10
587 588 2.792947 ATACCATCGCCGCTCCGTT 61.793 57.895 0.00 0.00 0.00 4.44
588 589 3.224324 ATACCATCGCCGCTCCGT 61.224 61.111 0.00 0.00 0.00 4.69
589 590 2.734723 CATACCATCGCCGCTCCG 60.735 66.667 0.00 0.00 0.00 4.63
590 591 2.357517 CCATACCATCGCCGCTCC 60.358 66.667 0.00 0.00 0.00 4.70
885 1145 0.831307 ACGGCTATCCCCTTCTGTTC 59.169 55.000 0.00 0.00 0.00 3.18
979 2657 3.071837 TATGCGTCCCTGCCGTCA 61.072 61.111 0.00 0.00 0.00 4.35
1584 3290 2.036256 ACTTCAGGTGCATGCCCC 59.964 61.111 16.68 14.22 0.00 5.80
1869 3577 0.754587 TGCCATTGCCACACAACAGA 60.755 50.000 0.00 0.00 42.27 3.41
2084 3797 5.937187 CATTAACGAATGGTTGTGTGATGA 58.063 37.500 0.00 0.00 39.75 2.92
2133 3846 0.529773 GTTCACCTGTGAGCACGACA 60.530 55.000 8.96 0.00 41.13 4.35
2469 6053 0.706433 ATCCCTGCAGGTGATTGGTT 59.294 50.000 30.63 9.77 36.75 3.67
2541 7800 2.997986 CCATTTCCAGCTTGTGCATTTC 59.002 45.455 0.00 0.00 42.74 2.17
2918 8276 0.588252 GCACAGGCACACTACAACAG 59.412 55.000 0.00 0.00 40.72 3.16
3057 8415 0.957395 CAGCGGTGCAGAGGAACATT 60.957 55.000 0.00 0.00 0.00 2.71
3184 8551 3.502123 AACTTTGACGGATCCCTTTCA 57.498 42.857 6.06 3.63 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.