Multiple sequence alignment - TraesCS3B01G348800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G348800 chr3B 100.000 3207 0 0 1 3207 559111311 559108105 0.000000e+00 5923.0
1 TraesCS3B01G348800 chr3B 87.442 215 27 0 4 218 690490353 690490139 6.870000e-62 248.0
2 TraesCS3B01G348800 chr3D 90.798 2130 104 37 1069 3153 427632258 427630176 0.000000e+00 2763.0
3 TraesCS3B01G348800 chr3D 83.019 159 16 7 923 1075 427758252 427758099 2.010000e-27 134.0
4 TraesCS3B01G348800 chr3A 91.695 1493 52 27 914 2377 558515201 558516650 0.000000e+00 2004.0
5 TraesCS3B01G348800 chr3A 86.316 760 59 24 2415 3153 558516657 558517392 0.000000e+00 785.0
6 TraesCS3B01G348800 chr1B 82.480 879 121 14 1 872 287839801 287840653 0.000000e+00 739.0
7 TraesCS3B01G348800 chr1B 79.217 332 45 14 548 872 677635820 677635506 3.240000e-50 209.0
8 TraesCS3B01G348800 chr1B 94.231 52 3 0 1396 1447 563025110 563025161 2.650000e-11 80.5
9 TraesCS3B01G348800 chr4B 80.341 880 159 9 1 873 433329669 433330541 0.000000e+00 654.0
10 TraesCS3B01G348800 chr7D 80.311 899 139 26 1 872 552314490 552313603 0.000000e+00 645.0
11 TraesCS3B01G348800 chr7D 80.223 895 146 19 1 872 419804176 419805062 0.000000e+00 643.0
12 TraesCS3B01G348800 chr4A 78.957 575 106 11 4 571 722133672 722133106 8.400000e-101 377.0
13 TraesCS3B01G348800 chr7B 73.671 414 104 4 13 425 26639854 26640263 4.280000e-34 156.0
14 TraesCS3B01G348800 chr2B 71.778 450 120 6 13 460 96244962 96244518 1.560000e-23 121.0
15 TraesCS3B01G348800 chr1A 94.118 68 4 0 2039 2106 513733667 513733734 1.570000e-18 104.0
16 TraesCS3B01G348800 chr1A 89.831 59 5 1 1390 1447 513732987 513733045 1.230000e-09 75.0
17 TraesCS3B01G348800 chr1A 78.261 115 15 8 1803 1912 513733413 513733522 7.430000e-07 65.8
18 TraesCS3B01G348800 chr1D 91.525 59 4 1 1390 1447 416468866 416468924 2.650000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G348800 chr3B 559108105 559111311 3206 True 5923.0 5923 100.0000 1 3207 1 chr3B.!!$R1 3206
1 TraesCS3B01G348800 chr3D 427630176 427632258 2082 True 2763.0 2763 90.7980 1069 3153 1 chr3D.!!$R1 2084
2 TraesCS3B01G348800 chr3A 558515201 558517392 2191 False 1394.5 2004 89.0055 914 3153 2 chr3A.!!$F1 2239
3 TraesCS3B01G348800 chr1B 287839801 287840653 852 False 739.0 739 82.4800 1 872 1 chr1B.!!$F1 871
4 TraesCS3B01G348800 chr4B 433329669 433330541 872 False 654.0 654 80.3410 1 873 1 chr4B.!!$F1 872
5 TraesCS3B01G348800 chr7D 552313603 552314490 887 True 645.0 645 80.3110 1 872 1 chr7D.!!$R1 871
6 TraesCS3B01G348800 chr7D 419804176 419805062 886 False 643.0 643 80.2230 1 872 1 chr7D.!!$F1 871
7 TraesCS3B01G348800 chr4A 722133106 722133672 566 True 377.0 377 78.9570 4 571 1 chr4A.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 913 0.036952 AGAGTCTTCATGCGTGGTGG 60.037 55.0 5.98 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2567 2635 0.247736 ACAACCGAGGTCATCTCAGC 59.752 55.0 0.0 0.0 42.55 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.838202 ACACGGACCCAAATATCAGTCT 59.162 45.455 0.00 0.00 0.00 3.24
47 48 3.515502 TCTTGTCAAAGACCATCTCCGAT 59.484 43.478 0.00 0.00 37.51 4.18
56 57 1.147191 ACCATCTCCGATGGCCTAGTA 59.853 52.381 19.87 0.00 42.82 1.82
107 108 3.949754 CACTGAAATCATACTGCCATGGT 59.050 43.478 14.67 0.00 0.00 3.55
110 111 2.260844 AATCATACTGCCATGGTCCG 57.739 50.000 14.67 4.89 0.00 4.79
131 132 3.391965 GTTGTTCATTGCATGCTTCCAA 58.608 40.909 20.33 4.79 0.00 3.53
173 174 1.906574 ACCTCGAAAGTATTGGAGCCA 59.093 47.619 0.00 0.00 39.34 4.75
179 180 4.081142 TCGAAAGTATTGGAGCCAAGATCA 60.081 41.667 8.09 0.00 39.47 2.92
212 213 0.465287 CTTTGTGCAAACCCCAAGCT 59.535 50.000 0.00 0.00 0.00 3.74
222 223 1.675310 CCCCAAGCTCGTTGCATCA 60.675 57.895 0.00 0.00 45.94 3.07
226 227 0.587768 CAAGCTCGTTGCATCACACA 59.412 50.000 0.00 0.00 45.94 3.72
230 231 1.197492 GCTCGTTGCATCACACATTCA 59.803 47.619 0.00 0.00 42.31 2.57
256 257 1.964223 ACTCATAATCATCGGCCTCGT 59.036 47.619 0.00 0.00 37.69 4.18
269 270 1.734477 CCTCGTCGAGCACACCTTG 60.734 63.158 17.02 0.00 0.00 3.61
282 283 4.379243 CCTTGCCGACCGCTGACT 62.379 66.667 0.00 0.00 38.78 3.41
285 286 2.214181 CTTGCCGACCGCTGACTAGT 62.214 60.000 0.00 0.00 38.78 2.57
288 289 1.429825 CCGACCGCTGACTAGTGAG 59.570 63.158 4.79 4.79 36.52 3.51
290 291 0.375454 CGACCGCTGACTAGTGAGAG 59.625 60.000 14.06 9.92 36.52 3.20
293 294 2.229302 GACCGCTGACTAGTGAGAGTTT 59.771 50.000 14.06 0.00 36.52 2.66
311 312 5.072329 AGAGTTTCTTGGAATCACCTTCTCA 59.928 40.000 0.00 0.00 39.86 3.27
320 321 0.967887 TCACCTTCTCAGGCTCCTCG 60.968 60.000 0.00 0.00 45.56 4.63
329 330 1.140052 TCAGGCTCCTCGAACACAAAA 59.860 47.619 0.00 0.00 0.00 2.44
336 338 2.092861 TCCTCGAACACAAAACCCTCAA 60.093 45.455 0.00 0.00 0.00 3.02
349 351 0.771127 CCCTCAACCTCCTTGTCCAA 59.229 55.000 0.00 0.00 0.00 3.53
413 415 1.112916 CCGGGGTTTTGCTTTCCACT 61.113 55.000 0.00 0.00 0.00 4.00
459 461 0.369931 TGTTTCATCGATCTTGCGCG 59.630 50.000 0.00 0.00 0.00 6.86
460 462 0.645355 GTTTCATCGATCTTGCGCGA 59.355 50.000 12.10 0.00 41.14 5.87
480 484 3.537874 GCGTAGACATCGGCCCCT 61.538 66.667 0.00 0.00 0.00 4.79
537 550 1.138247 CTCTTGCATGCCTTTCGCC 59.862 57.895 16.68 0.00 36.24 5.54
551 564 0.472471 TTCGCCTTCCTCTGGTTTGT 59.528 50.000 0.00 0.00 0.00 2.83
573 586 4.240103 CCCGAGCCCGATGCATGA 62.240 66.667 2.46 0.00 44.83 3.07
621 634 0.458025 GGTTCGCCTCGTCGATCTTT 60.458 55.000 0.00 0.00 38.37 2.52
689 708 2.403132 GAAGATCCCATCTGCCCCGG 62.403 65.000 0.00 0.00 40.13 5.73
699 718 2.204029 TGCCCCGGAACCCTAGTT 60.204 61.111 0.73 0.00 39.54 2.24
701 720 2.599757 GCCCCGGAACCCTAGTTGT 61.600 63.158 0.73 0.00 35.94 3.32
740 759 4.161295 CATCCGCTCCGCCTCCAA 62.161 66.667 0.00 0.00 0.00 3.53
763 782 2.363795 AAGGGAGATCGCCGGTCA 60.364 61.111 9.58 0.00 0.00 4.02
767 786 1.519455 GGAGATCGCCGGTCAGTTG 60.519 63.158 1.90 0.00 0.00 3.16
795 815 4.162690 GCCGTCGCCTCCCTCATT 62.163 66.667 0.00 0.00 0.00 2.57
816 836 2.757894 ACCACCGTATCCTCTCTCAT 57.242 50.000 0.00 0.00 0.00 2.90
827 848 1.514678 CTCTCTCATCCCCGAGCTCG 61.515 65.000 29.06 29.06 39.44 5.03
873 894 0.534877 ATCGCCATGCAATCGCCTTA 60.535 50.000 0.00 0.00 37.32 2.69
874 895 1.159713 TCGCCATGCAATCGCCTTAG 61.160 55.000 0.00 0.00 37.32 2.18
875 896 1.159713 CGCCATGCAATCGCCTTAGA 61.160 55.000 0.00 0.00 37.32 2.10
876 897 0.590195 GCCATGCAATCGCCTTAGAG 59.410 55.000 0.00 0.00 37.32 2.43
877 898 1.959042 CCATGCAATCGCCTTAGAGT 58.041 50.000 0.00 0.00 37.32 3.24
878 899 1.869767 CCATGCAATCGCCTTAGAGTC 59.130 52.381 0.00 0.00 37.32 3.36
879 900 2.484417 CCATGCAATCGCCTTAGAGTCT 60.484 50.000 0.00 0.00 37.32 3.24
880 901 3.201290 CATGCAATCGCCTTAGAGTCTT 58.799 45.455 0.00 0.00 37.32 3.01
881 902 2.893637 TGCAATCGCCTTAGAGTCTTC 58.106 47.619 0.00 0.00 37.32 2.87
882 903 2.233676 TGCAATCGCCTTAGAGTCTTCA 59.766 45.455 0.00 0.00 37.32 3.02
883 904 3.118629 TGCAATCGCCTTAGAGTCTTCAT 60.119 43.478 0.00 0.00 37.32 2.57
884 905 3.247173 GCAATCGCCTTAGAGTCTTCATG 59.753 47.826 0.00 0.00 0.00 3.07
885 906 2.586258 TCGCCTTAGAGTCTTCATGC 57.414 50.000 0.00 0.00 0.00 4.06
886 907 1.202302 TCGCCTTAGAGTCTTCATGCG 60.202 52.381 15.56 15.56 41.90 4.73
887 908 1.469940 CGCCTTAGAGTCTTCATGCGT 60.470 52.381 14.22 0.00 36.34 5.24
888 909 1.929836 GCCTTAGAGTCTTCATGCGTG 59.070 52.381 0.00 0.00 0.00 5.34
889 910 2.544685 CCTTAGAGTCTTCATGCGTGG 58.455 52.381 5.98 0.00 0.00 4.94
890 911 2.093973 CCTTAGAGTCTTCATGCGTGGT 60.094 50.000 5.98 0.00 0.00 4.16
891 912 2.654749 TAGAGTCTTCATGCGTGGTG 57.345 50.000 5.98 0.00 0.00 4.17
892 913 0.036952 AGAGTCTTCATGCGTGGTGG 60.037 55.000 5.98 0.00 0.00 4.61
893 914 0.037326 GAGTCTTCATGCGTGGTGGA 60.037 55.000 5.98 0.00 0.00 4.02
894 915 0.320771 AGTCTTCATGCGTGGTGGAC 60.321 55.000 5.98 11.46 0.00 4.02
895 916 1.003839 TCTTCATGCGTGGTGGACC 60.004 57.895 5.98 0.00 0.00 4.46
896 917 2.033448 TTCATGCGTGGTGGACCC 59.967 61.111 5.98 0.00 34.29 4.46
897 918 3.561120 TTCATGCGTGGTGGACCCC 62.561 63.158 5.98 0.00 34.29 4.95
903 924 2.284112 GTGGTGGACCCCGACCTA 60.284 66.667 1.46 0.00 32.98 3.08
904 925 2.284112 TGGTGGACCCCGACCTAC 60.284 66.667 1.46 0.00 32.98 3.18
905 926 2.284112 GGTGGACCCCGACCTACA 60.284 66.667 0.00 0.00 0.00 2.74
906 927 1.914764 GGTGGACCCCGACCTACAA 60.915 63.158 0.00 0.00 0.00 2.41
907 928 1.294459 GTGGACCCCGACCTACAAC 59.706 63.158 0.00 0.00 0.00 3.32
908 929 1.914764 TGGACCCCGACCTACAACC 60.915 63.158 0.00 0.00 0.00 3.77
909 930 2.663075 GGACCCCGACCTACAACCC 61.663 68.421 0.00 0.00 0.00 4.11
910 931 2.608678 ACCCCGACCTACAACCCC 60.609 66.667 0.00 0.00 0.00 4.95
911 932 3.405318 CCCCGACCTACAACCCCC 61.405 72.222 0.00 0.00 0.00 5.40
912 933 2.285144 CCCGACCTACAACCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
919 940 1.517832 CTACAACCCCCTCTCGCAG 59.482 63.158 0.00 0.00 0.00 5.18
920 941 1.961180 CTACAACCCCCTCTCGCAGG 61.961 65.000 0.00 0.00 43.01 4.85
951 972 6.795098 ACACGTGACTTTCTATGCAAAATA 57.205 33.333 25.01 0.00 0.00 1.40
964 985 8.621532 TCTATGCAAAATAGGCTTTATGTAGG 57.378 34.615 0.00 0.00 0.00 3.18
1014 1037 4.914312 TTTTGTAAGGCGTCGTATCAAG 57.086 40.909 0.00 0.00 0.00 3.02
1015 1038 3.853831 TTGTAAGGCGTCGTATCAAGA 57.146 42.857 0.00 0.00 0.00 3.02
1016 1039 4.380841 TTGTAAGGCGTCGTATCAAGAT 57.619 40.909 0.00 0.00 0.00 2.40
1027 1053 4.208666 GTCGTATCAAGATTCGGCTTTACC 59.791 45.833 6.46 0.00 34.20 2.85
1041 1067 5.055812 CGGCTTTACCCGTGGTATTTTATA 58.944 41.667 3.97 0.00 43.24 0.98
1049 1075 3.182972 CCGTGGTATTTTATAAGCCGACG 59.817 47.826 0.00 0.00 0.00 5.12
1122 1150 4.791069 TCCCCACGCCCCTCTACC 62.791 72.222 0.00 0.00 0.00 3.18
1126 1154 3.834799 CACGCCCCTCTACCCGTC 61.835 72.222 0.00 0.00 0.00 4.79
1127 1155 4.057943 ACGCCCCTCTACCCGTCT 62.058 66.667 0.00 0.00 0.00 4.18
1128 1156 2.194056 CGCCCCTCTACCCGTCTA 59.806 66.667 0.00 0.00 0.00 2.59
1129 1157 2.192187 CGCCCCTCTACCCGTCTAC 61.192 68.421 0.00 0.00 0.00 2.59
1130 1158 1.831726 GCCCCTCTACCCGTCTACC 60.832 68.421 0.00 0.00 0.00 3.18
1139 1167 3.885521 CCGTCTACCGTCCTCGCC 61.886 72.222 0.00 0.00 35.54 5.54
1142 1170 2.753043 TCTACCGTCCTCGCCCAC 60.753 66.667 0.00 0.00 35.54 4.61
1180 1209 1.154395 GCAGCGAACGAAGCCTTTC 60.154 57.895 0.00 0.00 34.64 2.62
1308 1338 1.306825 AGCTGGAGAGATGGGCTGT 60.307 57.895 0.00 0.00 31.68 4.40
1338 1368 0.107312 AGAAGCGCATGAAGCATCCT 60.107 50.000 11.47 6.52 46.13 3.24
1665 1695 3.636231 CGGTCACCTGGGAAGCCA 61.636 66.667 0.00 0.00 0.00 4.75
2023 2068 4.436998 AGGAAAGCGTCGCGGAGG 62.437 66.667 12.30 0.00 0.00 4.30
2106 2163 3.618351 CATGGAGTGCTTCATCTTCCTT 58.382 45.455 0.00 0.00 0.00 3.36
2204 2263 1.340017 CCTGGGCTAGCAGCAGTAAAA 60.340 52.381 18.24 0.00 44.75 1.52
2205 2264 2.436417 CTGGGCTAGCAGCAGTAAAAA 58.564 47.619 18.24 0.00 44.75 1.94
2266 2325 3.055719 CCCGCGAAATGCTGGTGT 61.056 61.111 8.23 0.00 42.57 4.16
2300 2366 2.522367 TTGGGTGGGGTCGTCTTCC 61.522 63.158 0.00 0.00 0.00 3.46
2307 2373 1.376037 GGGTCGTCTTCCTTGGCTG 60.376 63.158 0.00 0.00 0.00 4.85
2308 2374 1.376037 GGTCGTCTTCCTTGGCTGG 60.376 63.158 0.00 0.00 0.00 4.85
2309 2375 2.035442 GTCGTCTTCCTTGGCTGGC 61.035 63.158 0.00 0.00 0.00 4.85
2310 2376 2.217038 TCGTCTTCCTTGGCTGGCT 61.217 57.895 2.00 0.00 0.00 4.75
2314 2380 0.773644 TCTTCCTTGGCTGGCTCTTT 59.226 50.000 2.00 0.00 0.00 2.52
2320 2386 0.827507 TTGGCTGGCTCTTTTGGGTC 60.828 55.000 2.00 0.00 0.00 4.46
2381 2448 2.791170 GCCCTTGCTTCTGATCCTG 58.209 57.895 0.00 0.00 33.53 3.86
2389 2456 3.473625 TGCTTCTGATCCTGTATGCATG 58.526 45.455 10.16 0.00 0.00 4.06
2390 2457 2.225963 GCTTCTGATCCTGTATGCATGC 59.774 50.000 11.82 11.82 0.00 4.06
2391 2458 3.473625 CTTCTGATCCTGTATGCATGCA 58.526 45.455 25.04 25.04 0.00 3.96
2392 2459 3.782656 TCTGATCCTGTATGCATGCAT 57.217 42.857 33.92 33.92 40.19 3.96
2403 2470 2.857186 TGCATGCATACGGTATCCAT 57.143 45.000 18.46 0.00 0.00 3.41
2406 2473 4.252878 TGCATGCATACGGTATCCATTAG 58.747 43.478 18.46 0.00 0.00 1.73
2407 2474 4.253685 GCATGCATACGGTATCCATTAGT 58.746 43.478 14.21 0.00 0.00 2.24
2408 2475 5.046950 TGCATGCATACGGTATCCATTAGTA 60.047 40.000 18.46 0.00 0.00 1.82
2409 2476 6.049149 GCATGCATACGGTATCCATTAGTAT 58.951 40.000 14.21 0.00 0.00 2.12
2412 2479 9.764363 CATGCATACGGTATCCATTAGTATTAT 57.236 33.333 0.00 0.00 0.00 1.28
2413 2480 9.764363 ATGCATACGGTATCCATTAGTATTATG 57.236 33.333 0.00 0.00 0.00 1.90
2414 2481 8.755028 TGCATACGGTATCCATTAGTATTATGT 58.245 33.333 0.00 0.00 0.00 2.29
2421 2488 7.705325 GGTATCCATTAGTATTATGTAGTGCCG 59.295 40.741 0.00 0.00 0.00 5.69
2425 2492 7.988599 TCCATTAGTATTATGTAGTGCCGTTTT 59.011 33.333 0.00 0.00 0.00 2.43
2441 2508 3.506067 CCGTTTTCTTTGGGTTGCTAGAT 59.494 43.478 0.00 0.00 0.00 1.98
2497 2564 4.992381 AGTTGACAGACGATTAAGTTGC 57.008 40.909 0.00 0.00 0.00 4.17
2511 2578 1.172180 AGTTGCGTTGGTGACCCATG 61.172 55.000 0.00 0.00 41.49 3.66
2567 2635 2.411904 GTCCAGTGCTCAGTTCTGAAG 58.588 52.381 4.09 0.73 0.00 3.02
2591 2659 2.737252 GAGATGACCTCGGTTGTTGAAC 59.263 50.000 0.00 0.00 31.32 3.18
2632 2700 1.936547 GTCAGACATCGGATGCTTTCC 59.063 52.381 17.61 2.95 41.59 3.13
2633 2701 1.554617 TCAGACATCGGATGCTTTCCA 59.445 47.619 17.61 0.00 45.78 3.53
2634 2702 2.171237 TCAGACATCGGATGCTTTCCAT 59.829 45.455 17.61 0.00 45.78 3.41
2635 2703 2.947652 CAGACATCGGATGCTTTCCATT 59.052 45.455 17.61 0.00 45.78 3.16
2636 2704 3.379372 CAGACATCGGATGCTTTCCATTT 59.621 43.478 17.61 0.00 45.78 2.32
2637 2705 3.629398 AGACATCGGATGCTTTCCATTTC 59.371 43.478 17.61 4.83 45.78 2.17
2640 2708 0.248621 CGGATGCTTTCCATTTCGCC 60.249 55.000 7.00 0.00 45.78 5.54
2641 2709 0.103026 GGATGCTTTCCATTTCGCCC 59.897 55.000 1.83 0.00 44.74 6.13
2642 2710 0.248621 GATGCTTTCCATTTCGCCCG 60.249 55.000 0.00 0.00 33.29 6.13
2643 2711 1.666209 ATGCTTTCCATTTCGCCCGG 61.666 55.000 0.00 0.00 0.00 5.73
2663 2736 2.034532 CCCATGAGTGCTGCCACA 59.965 61.111 0.00 0.00 44.53 4.17
2667 2740 1.601759 ATGAGTGCTGCCACACCAC 60.602 57.895 0.00 0.00 44.53 4.16
2719 2801 0.598065 GGAACATCCACGCAGCTTTT 59.402 50.000 0.00 0.00 36.28 2.27
2723 2805 0.169672 CATCCACGCAGCTTTTCTGG 59.830 55.000 0.00 0.00 43.06 3.86
2804 2886 2.911484 CGCATTGCATCCGATGGGG 61.911 63.158 9.69 0.00 40.38 4.96
2851 2933 0.026027 AATAGAGACGACGACGACGC 59.974 55.000 18.98 9.89 43.96 5.19
2939 3042 2.229062 GGCTTGCAAGTAAAGAAGACCC 59.771 50.000 26.55 11.85 0.00 4.46
3023 3132 2.260743 CGCTCTGTCTCTGCTGCA 59.739 61.111 0.88 0.88 0.00 4.41
3046 3155 2.186826 GTTTGACCACGTGCCTGCT 61.187 57.895 10.91 0.00 0.00 4.24
3049 3158 4.996434 GACCACGTGCCTGCTGCT 62.996 66.667 10.91 0.00 42.00 4.24
3153 3266 2.571212 TCGTGCTCATTGACCAGTTTT 58.429 42.857 0.00 0.00 0.00 2.43
3154 3267 2.290367 TCGTGCTCATTGACCAGTTTTG 59.710 45.455 0.00 0.00 0.00 2.44
3155 3268 2.397549 GTGCTCATTGACCAGTTTTGC 58.602 47.619 0.00 0.00 0.00 3.68
3156 3269 1.340889 TGCTCATTGACCAGTTTTGCC 59.659 47.619 0.00 0.00 0.00 4.52
3157 3270 1.340889 GCTCATTGACCAGTTTTGCCA 59.659 47.619 0.00 0.00 0.00 4.92
3158 3271 2.863704 GCTCATTGACCAGTTTTGCCAC 60.864 50.000 0.00 0.00 0.00 5.01
3159 3272 1.686052 TCATTGACCAGTTTTGCCACC 59.314 47.619 0.00 0.00 0.00 4.61
3160 3273 1.411977 CATTGACCAGTTTTGCCACCA 59.588 47.619 0.00 0.00 0.00 4.17
3161 3274 1.110442 TTGACCAGTTTTGCCACCAG 58.890 50.000 0.00 0.00 0.00 4.00
3162 3275 0.033601 TGACCAGTTTTGCCACCAGT 60.034 50.000 0.00 0.00 0.00 4.00
3163 3276 1.111277 GACCAGTTTTGCCACCAGTT 58.889 50.000 0.00 0.00 0.00 3.16
3164 3277 1.480545 GACCAGTTTTGCCACCAGTTT 59.519 47.619 0.00 0.00 0.00 2.66
3165 3278 1.480545 ACCAGTTTTGCCACCAGTTTC 59.519 47.619 0.00 0.00 0.00 2.78
3166 3279 1.756538 CCAGTTTTGCCACCAGTTTCT 59.243 47.619 0.00 0.00 0.00 2.52
3167 3280 2.223805 CCAGTTTTGCCACCAGTTTCTC 60.224 50.000 0.00 0.00 0.00 2.87
3168 3281 1.676006 AGTTTTGCCACCAGTTTCTCG 59.324 47.619 0.00 0.00 0.00 4.04
3169 3282 1.404035 GTTTTGCCACCAGTTTCTCGT 59.596 47.619 0.00 0.00 0.00 4.18
3170 3283 1.305201 TTTGCCACCAGTTTCTCGTC 58.695 50.000 0.00 0.00 0.00 4.20
3171 3284 0.468226 TTGCCACCAGTTTCTCGTCT 59.532 50.000 0.00 0.00 0.00 4.18
3172 3285 0.033504 TGCCACCAGTTTCTCGTCTC 59.966 55.000 0.00 0.00 0.00 3.36
3173 3286 0.318762 GCCACCAGTTTCTCGTCTCT 59.681 55.000 0.00 0.00 0.00 3.10
3174 3287 1.270358 GCCACCAGTTTCTCGTCTCTT 60.270 52.381 0.00 0.00 0.00 2.85
3175 3288 2.408050 CCACCAGTTTCTCGTCTCTTG 58.592 52.381 0.00 0.00 0.00 3.02
3176 3289 2.224066 CCACCAGTTTCTCGTCTCTTGT 60.224 50.000 0.00 0.00 0.00 3.16
3177 3290 3.053455 CACCAGTTTCTCGTCTCTTGTC 58.947 50.000 0.00 0.00 0.00 3.18
3178 3291 2.959707 ACCAGTTTCTCGTCTCTTGTCT 59.040 45.455 0.00 0.00 0.00 3.41
3179 3292 3.385111 ACCAGTTTCTCGTCTCTTGTCTT 59.615 43.478 0.00 0.00 0.00 3.01
3180 3293 3.738282 CCAGTTTCTCGTCTCTTGTCTTG 59.262 47.826 0.00 0.00 0.00 3.02
3181 3294 4.499865 CCAGTTTCTCGTCTCTTGTCTTGA 60.500 45.833 0.00 0.00 0.00 3.02
3182 3295 4.679197 CAGTTTCTCGTCTCTTGTCTTGAG 59.321 45.833 0.00 0.00 0.00 3.02
3183 3296 3.924918 TTCTCGTCTCTTGTCTTGAGG 57.075 47.619 0.00 0.00 32.78 3.86
3184 3297 1.542030 TCTCGTCTCTTGTCTTGAGGC 59.458 52.381 0.00 0.00 33.26 4.70
3185 3298 0.603569 TCGTCTCTTGTCTTGAGGCC 59.396 55.000 0.00 0.00 33.01 5.19
3186 3299 0.390472 CGTCTCTTGTCTTGAGGCCC 60.390 60.000 0.00 0.00 33.01 5.80
3187 3300 0.687354 GTCTCTTGTCTTGAGGCCCA 59.313 55.000 0.00 0.00 30.60 5.36
3188 3301 0.687354 TCTCTTGTCTTGAGGCCCAC 59.313 55.000 0.00 0.00 32.78 4.61
3189 3302 0.671781 CTCTTGTCTTGAGGCCCACG 60.672 60.000 0.00 0.00 0.00 4.94
3190 3303 1.672356 CTTGTCTTGAGGCCCACGG 60.672 63.158 0.00 0.00 0.00 4.94
3191 3304 3.190738 TTGTCTTGAGGCCCACGGG 62.191 63.158 0.00 0.00 38.57 5.28
3192 3305 3.319198 GTCTTGAGGCCCACGGGA 61.319 66.667 6.21 0.00 37.50 5.14
3193 3306 2.528127 TCTTGAGGCCCACGGGAA 60.528 61.111 6.21 0.00 37.50 3.97
3194 3307 1.923395 TCTTGAGGCCCACGGGAAT 60.923 57.895 6.21 0.00 37.50 3.01
3195 3308 1.000896 CTTGAGGCCCACGGGAATT 60.001 57.895 6.21 0.00 37.50 2.17
3196 3309 1.001393 TTGAGGCCCACGGGAATTC 60.001 57.895 6.21 0.00 37.50 2.17
3197 3310 2.124278 GAGGCCCACGGGAATTCC 60.124 66.667 16.74 16.74 37.50 3.01
3198 3311 2.614013 AGGCCCACGGGAATTCCT 60.614 61.111 23.63 2.08 37.50 3.36
3199 3312 2.124278 GGCCCACGGGAATTCCTC 60.124 66.667 23.63 12.86 37.50 3.71
3200 3313 2.513897 GCCCACGGGAATTCCTCG 60.514 66.667 23.63 24.34 37.50 4.63
3201 3314 2.987125 CCCACGGGAATTCCTCGT 59.013 61.111 25.86 25.86 41.34 4.18
3203 3316 3.486263 CACGGGAATTCCTCGTGC 58.514 61.111 34.71 17.44 45.85 5.34
3204 3317 2.125673 ACGGGAATTCCTCGTGCG 60.126 61.111 28.78 22.75 39.95 5.34
3205 3318 2.183300 CGGGAATTCCTCGTGCGA 59.817 61.111 23.63 0.00 35.95 5.10
3206 3319 1.447140 CGGGAATTCCTCGTGCGAA 60.447 57.895 23.63 0.00 35.95 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.655003 TCTTTGACAAGACTGATATTTGGGTC 59.345 38.462 0.00 0.00 33.80 4.46
27 28 3.599343 CATCGGAGATGGTCTTTGACAA 58.401 45.455 2.29 0.00 45.12 3.18
56 57 5.441718 TCTTGAAGGAGTATGAAGGCAAT 57.558 39.130 0.00 0.00 0.00 3.56
131 132 0.326264 ACTTTGGCAGCGAAGGAGAT 59.674 50.000 6.26 0.00 0.00 2.75
173 174 4.026356 AGTAGCCAAGTTTGCTGATCTT 57.974 40.909 11.56 0.00 39.91 2.40
212 213 2.615912 TGTTGAATGTGTGATGCAACGA 59.384 40.909 0.00 0.00 41.12 3.85
222 223 7.926674 TGATTATGAGTGATGTTGAATGTGT 57.073 32.000 0.00 0.00 0.00 3.72
226 227 6.072838 GCCGATGATTATGAGTGATGTTGAAT 60.073 38.462 0.00 0.00 0.00 2.57
230 231 4.067896 GGCCGATGATTATGAGTGATGTT 58.932 43.478 0.00 0.00 0.00 2.71
269 270 2.202623 CACTAGTCAGCGGTCGGC 60.203 66.667 0.00 0.00 44.05 5.54
282 283 5.544176 AGGTGATTCCAAGAAACTCTCACTA 59.456 40.000 8.08 0.00 39.02 2.74
285 286 4.982241 AGGTGATTCCAAGAAACTCTCA 57.018 40.909 0.00 0.00 39.02 3.27
288 289 5.308825 TGAGAAGGTGATTCCAAGAAACTC 58.691 41.667 0.00 0.00 38.84 3.01
290 291 4.457257 CCTGAGAAGGTGATTCCAAGAAAC 59.543 45.833 0.00 0.00 38.84 2.78
293 294 2.026822 GCCTGAGAAGGTGATTCCAAGA 60.027 50.000 0.00 0.00 38.84 3.02
311 312 1.594331 GTTTTGTGTTCGAGGAGCCT 58.406 50.000 0.00 0.00 0.00 4.58
320 321 2.361119 GGAGGTTGAGGGTTTTGTGTTC 59.639 50.000 0.00 0.00 0.00 3.18
329 330 0.401395 TGGACAAGGAGGTTGAGGGT 60.401 55.000 0.00 0.00 38.60 4.34
336 338 1.697982 GGTACTGTTGGACAAGGAGGT 59.302 52.381 0.00 0.00 0.00 3.85
349 351 0.044244 ACTAGGGGGCATGGTACTGT 59.956 55.000 0.00 0.00 0.00 3.55
413 415 1.286248 GGGCTTCTTCTAAGTCCCCA 58.714 55.000 0.00 0.00 36.05 4.96
459 461 2.654404 GCCGATGTCTACGCCGTC 60.654 66.667 0.00 0.00 0.00 4.79
460 462 4.203076 GGCCGATGTCTACGCCGT 62.203 66.667 0.00 0.00 0.00 5.68
494 498 1.021920 GGCCTCGAGCAAGAAGAACC 61.022 60.000 6.99 0.00 46.50 3.62
537 550 1.608283 GGGACGACAAACCAGAGGAAG 60.608 57.143 0.00 0.00 0.00 3.46
597 610 1.372499 CGACGAGGCGAACCAGAAA 60.372 57.895 0.00 0.00 39.06 2.52
621 634 3.427773 GGAAACAAAGCAACACAACGGTA 60.428 43.478 0.00 0.00 0.00 4.02
689 708 2.290768 GGGGGAAAGACAACTAGGGTTC 60.291 54.545 0.00 0.00 32.73 3.62
699 718 2.231380 GGAGGCAGGGGGAAAGACA 61.231 63.158 0.00 0.00 0.00 3.41
701 720 1.616628 GAGGAGGCAGGGGGAAAGA 60.617 63.158 0.00 0.00 0.00 2.52
740 759 2.128507 GGCGATCTCCCTTCTCCGT 61.129 63.158 0.00 0.00 0.00 4.69
743 762 2.077821 GACCGGCGATCTCCCTTCTC 62.078 65.000 9.30 0.00 0.00 2.87
793 813 4.543689 TGAGAGAGGATACGGTGGTTAAT 58.456 43.478 0.00 0.00 46.39 1.40
795 815 3.657398 TGAGAGAGGATACGGTGGTTA 57.343 47.619 0.00 0.00 46.39 2.85
816 836 2.503846 TTAGGGTTCGAGCTCGGGGA 62.504 60.000 33.98 18.43 40.29 4.81
827 848 0.179081 CGCTGCTAGGGTTAGGGTTC 60.179 60.000 0.00 0.00 0.00 3.62
873 894 0.036952 CCACCACGCATGAAGACTCT 60.037 55.000 0.00 0.00 0.00 3.24
874 895 0.037326 TCCACCACGCATGAAGACTC 60.037 55.000 0.00 0.00 0.00 3.36
875 896 0.320771 GTCCACCACGCATGAAGACT 60.321 55.000 0.00 0.00 0.00 3.24
876 897 1.298859 GGTCCACCACGCATGAAGAC 61.299 60.000 0.00 0.00 35.64 3.01
877 898 1.003839 GGTCCACCACGCATGAAGA 60.004 57.895 0.00 0.00 35.64 2.87
878 899 2.040544 GGGTCCACCACGCATGAAG 61.041 63.158 0.00 0.00 39.85 3.02
879 900 2.033448 GGGTCCACCACGCATGAA 59.967 61.111 0.00 0.00 39.85 2.57
880 901 4.028490 GGGGTCCACCACGCATGA 62.028 66.667 0.00 0.00 42.91 3.07
886 907 2.284112 TAGGTCGGGGTCCACCAC 60.284 66.667 0.00 0.00 42.91 4.16
887 908 2.284112 GTAGGTCGGGGTCCACCA 60.284 66.667 0.00 0.00 42.91 4.17
888 909 1.914764 TTGTAGGTCGGGGTCCACC 60.915 63.158 0.00 0.00 39.11 4.61
889 910 1.294459 GTTGTAGGTCGGGGTCCAC 59.706 63.158 0.00 0.00 0.00 4.02
890 911 1.914764 GGTTGTAGGTCGGGGTCCA 60.915 63.158 0.00 0.00 0.00 4.02
891 912 2.663075 GGGTTGTAGGTCGGGGTCC 61.663 68.421 0.00 0.00 0.00 4.46
892 913 2.663075 GGGGTTGTAGGTCGGGGTC 61.663 68.421 0.00 0.00 0.00 4.46
893 914 2.608678 GGGGTTGTAGGTCGGGGT 60.609 66.667 0.00 0.00 0.00 4.95
894 915 3.405318 GGGGGTTGTAGGTCGGGG 61.405 72.222 0.00 0.00 0.00 5.73
895 916 2.285144 AGGGGGTTGTAGGTCGGG 60.285 66.667 0.00 0.00 0.00 5.14
896 917 1.305887 AGAGGGGGTTGTAGGTCGG 60.306 63.158 0.00 0.00 0.00 4.79
897 918 1.664321 CGAGAGGGGGTTGTAGGTCG 61.664 65.000 0.00 0.00 0.00 4.79
898 919 1.957765 GCGAGAGGGGGTTGTAGGTC 61.958 65.000 0.00 0.00 0.00 3.85
899 920 1.988406 GCGAGAGGGGGTTGTAGGT 60.988 63.158 0.00 0.00 0.00 3.08
900 921 1.961180 CTGCGAGAGGGGGTTGTAGG 61.961 65.000 0.00 0.00 0.00 3.18
901 922 1.517832 CTGCGAGAGGGGGTTGTAG 59.482 63.158 0.00 0.00 0.00 2.74
902 923 1.987855 CCTGCGAGAGGGGGTTGTA 60.988 63.158 0.00 0.00 38.36 2.41
903 924 3.322466 CCTGCGAGAGGGGGTTGT 61.322 66.667 0.00 0.00 38.36 3.32
904 925 4.785453 GCCTGCGAGAGGGGGTTG 62.785 72.222 3.33 0.00 43.07 3.77
907 928 4.559063 CATGCCTGCGAGAGGGGG 62.559 72.222 3.33 0.00 43.07 5.40
908 929 2.826777 AAACATGCCTGCGAGAGGGG 62.827 60.000 0.00 0.00 43.07 4.79
909 930 0.107703 TAAACATGCCTGCGAGAGGG 60.108 55.000 0.00 0.00 43.07 4.30
910 931 1.009829 GTAAACATGCCTGCGAGAGG 58.990 55.000 0.00 0.00 46.13 3.69
911 932 1.394917 GTGTAAACATGCCTGCGAGAG 59.605 52.381 0.00 0.00 0.00 3.20
912 933 1.438651 GTGTAAACATGCCTGCGAGA 58.561 50.000 0.00 0.00 0.00 4.04
919 940 3.250040 AGAAAGTCACGTGTAAACATGCC 59.750 43.478 16.51 0.00 36.36 4.40
920 941 4.468095 AGAAAGTCACGTGTAAACATGC 57.532 40.909 16.51 0.00 36.36 4.06
951 972 9.052759 CGTCATTTTTATACCTACATAAAGCCT 57.947 33.333 0.00 0.00 33.20 4.58
1014 1037 0.392060 ACCACGGGTAAAGCCGAATC 60.392 55.000 25.85 0.00 38.44 2.52
1015 1038 0.903942 TACCACGGGTAAAGCCGAAT 59.096 50.000 25.85 12.96 34.97 3.34
1016 1039 0.903942 ATACCACGGGTAAAGCCGAA 59.096 50.000 25.85 9.35 41.85 4.30
1027 1053 3.182972 CGTCGGCTTATAAAATACCACGG 59.817 47.826 0.00 0.00 0.00 4.94
1030 1056 3.132925 GGCGTCGGCTTATAAAATACCA 58.867 45.455 12.17 0.00 39.81 3.25
1041 1067 2.100631 CAATCTTCGGCGTCGGCTT 61.101 57.895 17.35 0.58 39.81 4.35
1049 1075 1.803289 GGAAGTGGCAATCTTCGGC 59.197 57.895 10.61 0.00 41.26 5.54
1124 1152 2.753043 TGGGCGAGGACGGTAGAC 60.753 66.667 0.00 0.00 40.15 2.59
1125 1153 2.753043 GTGGGCGAGGACGGTAGA 60.753 66.667 0.00 0.00 40.15 2.59
1126 1154 2.351336 GATGTGGGCGAGGACGGTAG 62.351 65.000 0.00 0.00 40.15 3.18
1127 1155 2.363276 ATGTGGGCGAGGACGGTA 60.363 61.111 0.00 0.00 40.15 4.02
1128 1156 3.771160 GATGTGGGCGAGGACGGT 61.771 66.667 0.00 0.00 40.15 4.83
1129 1157 4.530857 GGATGTGGGCGAGGACGG 62.531 72.222 0.00 0.00 40.15 4.79
1130 1158 3.432051 GAGGATGTGGGCGAGGACG 62.432 68.421 0.00 0.00 42.93 4.79
1139 1167 2.361438 GGGTACTACTTCGAGGATGTGG 59.639 54.545 0.00 0.00 0.00 4.17
1142 1170 1.607628 CGGGGTACTACTTCGAGGATG 59.392 57.143 0.00 0.00 0.00 3.51
1180 1209 1.760086 TGCTGGTGGTTGGGTTTGG 60.760 57.895 0.00 0.00 0.00 3.28
1354 1384 2.105128 CTTGTAGCGGCGAGGGAG 59.895 66.667 12.98 0.00 0.00 4.30
1545 1575 2.336809 CCTAGATCGCTCACCGCC 59.663 66.667 0.00 0.00 36.73 6.13
1560 1590 2.364842 ATCGACAGGCAGCTCCCT 60.365 61.111 0.00 0.00 34.93 4.20
1656 1686 2.858476 TTCCTGGCTGGCTTCCCA 60.858 61.111 5.39 0.00 39.32 4.37
1995 2040 2.815647 CTTTCCTCGCCTGCCGTC 60.816 66.667 0.00 0.00 38.35 4.79
2106 2163 1.681780 GGGAAATCGGACCAGCATCAA 60.682 52.381 0.00 0.00 0.00 2.57
2204 2263 2.616842 CCGTGAACCTGCTACACTTTTT 59.383 45.455 0.00 0.00 33.13 1.94
2205 2264 2.218603 CCGTGAACCTGCTACACTTTT 58.781 47.619 0.00 0.00 33.13 2.27
2222 2281 1.740296 GGCAGCGTTACATCACCGT 60.740 57.895 0.00 0.00 0.00 4.83
2300 2366 0.829182 ACCCAAAAGAGCCAGCCAAG 60.829 55.000 0.00 0.00 0.00 3.61
2307 2373 1.756430 GAGGATGACCCAAAAGAGCC 58.244 55.000 0.00 0.00 37.41 4.70
2308 2374 1.339151 ACGAGGATGACCCAAAAGAGC 60.339 52.381 0.00 0.00 37.41 4.09
2309 2375 2.744202 CAACGAGGATGACCCAAAAGAG 59.256 50.000 0.00 0.00 37.41 2.85
2310 2376 2.105821 ACAACGAGGATGACCCAAAAGA 59.894 45.455 0.00 0.00 37.41 2.52
2314 2380 3.992943 AATACAACGAGGATGACCCAA 57.007 42.857 0.00 0.00 37.41 4.12
2320 2386 2.675844 TCGGCAAAATACAACGAGGATG 59.324 45.455 0.00 0.00 0.00 3.51
2381 2448 4.635765 AATGGATACCGTATGCATGCATAC 59.364 41.667 41.87 41.87 44.93 2.39
2403 2470 9.439500 AAAGAAAACGGCACTACATAATACTAA 57.561 29.630 0.00 0.00 0.00 2.24
2406 2473 6.964934 CCAAAGAAAACGGCACTACATAATAC 59.035 38.462 0.00 0.00 0.00 1.89
2407 2474 6.094325 CCCAAAGAAAACGGCACTACATAATA 59.906 38.462 0.00 0.00 0.00 0.98
2408 2475 5.105917 CCCAAAGAAAACGGCACTACATAAT 60.106 40.000 0.00 0.00 0.00 1.28
2409 2476 4.216687 CCCAAAGAAAACGGCACTACATAA 59.783 41.667 0.00 0.00 0.00 1.90
2412 2479 1.950909 CCCAAAGAAAACGGCACTACA 59.049 47.619 0.00 0.00 0.00 2.74
2413 2480 1.951602 ACCCAAAGAAAACGGCACTAC 59.048 47.619 0.00 0.00 0.00 2.73
2414 2481 2.351706 ACCCAAAGAAAACGGCACTA 57.648 45.000 0.00 0.00 0.00 2.74
2415 2482 1.136110 CAACCCAAAGAAAACGGCACT 59.864 47.619 0.00 0.00 0.00 4.40
2416 2483 1.566404 CAACCCAAAGAAAACGGCAC 58.434 50.000 0.00 0.00 0.00 5.01
2421 2488 4.767409 AGGATCTAGCAACCCAAAGAAAAC 59.233 41.667 0.00 0.00 0.00 2.43
2425 2492 5.667626 AGATAAGGATCTAGCAACCCAAAGA 59.332 40.000 0.00 0.00 40.85 2.52
2470 2537 1.800805 ATCGTCTGTCAACTTGCCTG 58.199 50.000 0.00 0.00 0.00 4.85
2511 2578 2.686558 TTTGCAATGTTCGAGACAGC 57.313 45.000 0.00 6.04 42.62 4.40
2567 2635 0.247736 ACAACCGAGGTCATCTCAGC 59.752 55.000 0.00 0.00 42.55 4.26
2591 2659 0.601046 TCTCAAGCCTGACGCACTTG 60.601 55.000 0.00 0.00 41.70 3.16
2646 2714 2.034532 TGTGGCAGCACTCATGGG 59.965 61.111 0.00 0.00 0.00 4.00
2719 2801 7.724490 TCTGATTCTTTCTGATTAGACCAGA 57.276 36.000 12.44 12.44 38.74 3.86
2723 2805 6.145371 GCGGATCTGATTCTTTCTGATTAGAC 59.855 42.308 5.48 0.00 41.54 2.59
2777 2859 1.590932 GATGCAATGCGGAGATCTGT 58.409 50.000 0.00 0.00 0.00 3.41
2834 2916 2.782045 CGCGTCGTCGTCGTCTCTA 61.782 63.158 13.09 0.00 39.49 2.43
2939 3042 1.416049 CCGACACGTCAATTCTGCG 59.584 57.895 0.00 0.00 0.00 5.18
2983 3086 4.463879 CCAGCGGAGAGGCCACAG 62.464 72.222 5.01 0.00 35.94 3.66
3023 3132 1.373590 GGCACGTGGTCAAACAGTGT 61.374 55.000 18.88 0.00 35.46 3.55
3067 3176 2.654912 GACGCGAACCAACAGTCCG 61.655 63.158 15.93 0.00 0.00 4.79
3153 3266 0.033504 GAGACGAGAAACTGGTGGCA 59.966 55.000 0.00 0.00 0.00 4.92
3154 3267 0.318762 AGAGACGAGAAACTGGTGGC 59.681 55.000 0.00 0.00 0.00 5.01
3155 3268 2.224066 ACAAGAGACGAGAAACTGGTGG 60.224 50.000 0.00 0.00 0.00 4.61
3156 3269 3.053455 GACAAGAGACGAGAAACTGGTG 58.947 50.000 0.00 0.00 0.00 4.17
3157 3270 2.959707 AGACAAGAGACGAGAAACTGGT 59.040 45.455 0.00 0.00 0.00 4.00
3158 3271 3.651803 AGACAAGAGACGAGAAACTGG 57.348 47.619 0.00 0.00 0.00 4.00
3159 3272 4.611943 TCAAGACAAGAGACGAGAAACTG 58.388 43.478 0.00 0.00 0.00 3.16
3160 3273 4.261825 CCTCAAGACAAGAGACGAGAAACT 60.262 45.833 0.00 0.00 35.09 2.66
3161 3274 3.984633 CCTCAAGACAAGAGACGAGAAAC 59.015 47.826 0.00 0.00 35.09 2.78
3162 3275 3.553096 GCCTCAAGACAAGAGACGAGAAA 60.553 47.826 0.00 0.00 35.09 2.52
3163 3276 2.029828 GCCTCAAGACAAGAGACGAGAA 60.030 50.000 0.00 0.00 35.09 2.87
3164 3277 1.542030 GCCTCAAGACAAGAGACGAGA 59.458 52.381 0.00 0.00 35.09 4.04
3165 3278 1.403514 GGCCTCAAGACAAGAGACGAG 60.404 57.143 0.00 0.00 35.09 4.18
3166 3279 0.603569 GGCCTCAAGACAAGAGACGA 59.396 55.000 0.00 0.00 35.09 4.20
3167 3280 0.390472 GGGCCTCAAGACAAGAGACG 60.390 60.000 0.84 0.00 35.09 4.18
3168 3281 0.687354 TGGGCCTCAAGACAAGAGAC 59.313 55.000 4.53 0.00 35.09 3.36
3169 3282 0.687354 GTGGGCCTCAAGACAAGAGA 59.313 55.000 4.53 0.00 35.09 3.10
3170 3283 0.671781 CGTGGGCCTCAAGACAAGAG 60.672 60.000 4.53 0.00 0.00 2.85
3171 3284 1.371183 CGTGGGCCTCAAGACAAGA 59.629 57.895 4.53 0.00 0.00 3.02
3172 3285 1.672356 CCGTGGGCCTCAAGACAAG 60.672 63.158 4.53 0.00 0.00 3.16
3173 3286 2.429930 CCGTGGGCCTCAAGACAA 59.570 61.111 4.53 0.00 0.00 3.18
3174 3287 3.636231 CCCGTGGGCCTCAAGACA 61.636 66.667 4.53 0.00 0.00 3.41
3175 3288 2.198304 ATTCCCGTGGGCCTCAAGAC 62.198 60.000 4.53 0.00 34.68 3.01
3176 3289 1.497309 AATTCCCGTGGGCCTCAAGA 61.497 55.000 4.53 0.00 34.68 3.02
3177 3290 1.000896 AATTCCCGTGGGCCTCAAG 60.001 57.895 4.53 1.05 34.68 3.02
3178 3291 1.001393 GAATTCCCGTGGGCCTCAA 60.001 57.895 4.53 0.00 34.68 3.02
3179 3292 2.674754 GAATTCCCGTGGGCCTCA 59.325 61.111 4.53 0.00 34.68 3.86
3180 3293 2.124278 GGAATTCCCGTGGGCCTC 60.124 66.667 14.03 0.00 34.68 4.70
3181 3294 2.614013 AGGAATTCCCGTGGGCCT 60.614 61.111 21.22 0.00 40.87 5.19
3182 3295 2.124278 GAGGAATTCCCGTGGGCC 60.124 66.667 21.22 0.00 40.87 5.80
3183 3296 2.513897 CGAGGAATTCCCGTGGGC 60.514 66.667 21.22 3.30 40.87 5.36
3184 3297 1.449601 CACGAGGAATTCCCGTGGG 60.450 63.158 36.01 23.88 46.81 4.61
3185 3298 4.201951 CACGAGGAATTCCCGTGG 57.798 61.111 36.01 25.85 46.81 4.94
3187 3300 2.125673 CGCACGAGGAATTCCCGT 60.126 61.111 25.86 25.86 41.34 5.28
3188 3301 1.447140 TTCGCACGAGGAATTCCCG 60.447 57.895 24.84 24.84 40.87 5.14
3189 3302 4.609995 TTCGCACGAGGAATTCCC 57.390 55.556 21.22 11.43 36.42 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.