Multiple sequence alignment - TraesCS3B01G348000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G348000 chr3B 100.000 2847 0 0 1 2847 556961277 556958431 0.000000e+00 5258
1 TraesCS3B01G348000 chr3B 93.705 1382 68 10 675 2049 556945496 556944127 0.000000e+00 2052
2 TraesCS3B01G348000 chr3B 93.750 608 30 4 671 1273 556939715 556939111 0.000000e+00 905
3 TraesCS3B01G348000 chr3B 83.968 499 62 10 27 520 556940324 556939839 2.000000e-126 462
4 TraesCS3B01G348000 chr3B 92.481 266 14 5 2273 2533 800598478 800598742 2.680000e-100 375
5 TraesCS3B01G348000 chr3B 83.471 363 43 7 19 371 556946199 556945844 3.540000e-84 322
6 TraesCS3B01G348000 chr3D 92.986 2224 114 17 73 2277 427295948 427293748 0.000000e+00 3205
7 TraesCS3B01G348000 chr3D 92.491 1385 91 10 675 2049 427234078 427232697 0.000000e+00 1969
8 TraesCS3B01G348000 chr3D 91.476 1396 92 18 671 2049 427285659 427284274 0.000000e+00 1893
9 TraesCS3B01G348000 chr3D 92.398 1105 71 9 955 2049 427289369 427288268 0.000000e+00 1563
10 TraesCS3B01G348000 chr3D 92.090 1062 74 8 985 2038 427280532 427279473 0.000000e+00 1487
11 TraesCS3B01G348000 chr3D 95.349 301 14 0 2527 2827 427293751 427293451 1.980000e-131 479
12 TraesCS3B01G348000 chr3D 93.056 288 19 1 671 958 427280814 427280528 1.220000e-113 420
13 TraesCS3B01G348000 chr3D 97.436 234 6 0 2295 2528 576828807 576828574 1.590000e-107 399
14 TraesCS3B01G348000 chr3D 86.479 355 38 6 19 371 427290822 427290476 5.760000e-102 381
15 TraesCS3B01G348000 chr3D 98.649 74 1 0 1 74 427300465 427300392 6.400000e-27 132
16 TraesCS3B01G348000 chr3A 91.388 2067 132 24 1 2049 559063742 559065780 0.000000e+00 2789
17 TraesCS3B01G348000 chr3A 93.040 1365 83 6 675 2034 559333790 559335147 0.000000e+00 1984
18 TraesCS3B01G348000 chr3A 92.915 1369 85 6 675 2038 559264101 559265462 0.000000e+00 1980
19 TraesCS3B01G348000 chr3A 87.273 330 32 6 41 368 559333121 559333442 4.480000e-98 368
20 TraesCS3B01G348000 chr3A 86.970 330 33 8 41 368 559263434 559263755 2.080000e-96 363
21 TraesCS3B01G348000 chr5D 97.436 234 6 0 2295 2528 211766063 211765830 1.590000e-107 399
22 TraesCS3B01G348000 chr2D 97.436 234 6 0 2295 2528 631346915 631346682 1.590000e-107 399
23 TraesCS3B01G348000 chr1D 97.436 234 6 0 2295 2528 289804786 289804553 1.590000e-107 399
24 TraesCS3B01G348000 chr1D 97.009 234 7 0 2295 2528 133776932 133777165 7.390000e-106 394
25 TraesCS3B01G348000 chr1D 97.009 234 7 0 2295 2528 171768493 171768260 7.390000e-106 394
26 TraesCS3B01G348000 chrUn 97.009 234 7 0 2295 2528 69153907 69154140 7.390000e-106 394
27 TraesCS3B01G348000 chr7D 94.118 255 12 3 2277 2528 599065514 599065768 4.450000e-103 385


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G348000 chr3B 556958431 556961277 2846 True 5258.000000 5258 100.000000 1 2847 1 chr3B.!!$R1 2846
1 TraesCS3B01G348000 chr3B 556939111 556946199 7088 True 935.250000 2052 88.723500 19 2049 4 chr3B.!!$R2 2030
2 TraesCS3B01G348000 chr3D 427232697 427234078 1381 True 1969.000000 1969 92.491000 675 2049 1 chr3D.!!$R1 1374
3 TraesCS3B01G348000 chr3D 427279473 427295948 16475 True 1346.857143 3205 91.976286 19 2827 7 chr3D.!!$R4 2808
4 TraesCS3B01G348000 chr3A 559063742 559065780 2038 False 2789.000000 2789 91.388000 1 2049 1 chr3A.!!$F1 2048
5 TraesCS3B01G348000 chr3A 559333121 559335147 2026 False 1176.000000 1984 90.156500 41 2034 2 chr3A.!!$F3 1993
6 TraesCS3B01G348000 chr3A 559263434 559265462 2028 False 1171.500000 1980 89.942500 41 2038 2 chr3A.!!$F2 1997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 5622 0.179145 AACCGCCTAACAGATCGTCG 60.179 55.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 13399 0.034059 CCCGCTATGACCAGCCTAAG 59.966 60.0 0.0 0.0 38.37 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 5337 7.418337 AGTTGATATGTGTACACCTGATACA 57.582 36.000 22.91 12.29 0.00 2.29
224 5341 7.937649 TGATATGTGTACACCTGATACAGTAC 58.062 38.462 22.91 0.00 37.82 2.73
293 5411 5.063186 CAGACTGTCAGATATGCTCACAAAC 59.937 44.000 10.88 0.00 0.00 2.93
318 5437 0.994263 GCCGAAAATGATTGCAGTGC 59.006 50.000 8.58 8.58 0.00 4.40
331 5450 0.318107 GCAGTGCAAGCAATGACGTT 60.318 50.000 24.45 0.00 43.70 3.99
371 5490 9.813080 GTTTGAACATTCATTCTAGTGTTAGAC 57.187 33.333 0.00 0.00 37.00 2.59
373 5492 7.103641 TGAACATTCATTCTAGTGTTAGACCC 58.896 38.462 0.00 0.00 35.15 4.46
382 5553 1.985895 AGTGTTAGACCCCCAAAGAGG 59.014 52.381 0.00 0.00 37.03 3.69
383 5554 1.982958 GTGTTAGACCCCCAAAGAGGA 59.017 52.381 0.00 0.00 41.22 3.71
384 5555 2.576648 GTGTTAGACCCCCAAAGAGGAT 59.423 50.000 0.00 0.00 41.22 3.24
385 5556 3.010250 GTGTTAGACCCCCAAAGAGGATT 59.990 47.826 0.00 0.00 41.22 3.01
386 5557 3.010138 TGTTAGACCCCCAAAGAGGATTG 59.990 47.826 0.00 0.00 41.22 2.67
387 5558 2.059756 AGACCCCCAAAGAGGATTGA 57.940 50.000 0.00 0.00 41.22 2.57
388 5559 1.918957 AGACCCCCAAAGAGGATTGAG 59.081 52.381 0.00 0.00 41.22 3.02
409 5580 7.290857 TGAGTATTCGAAACAACTGAATAGC 57.709 36.000 13.83 2.44 35.79 2.97
412 5583 4.640805 TTCGAAACAACTGAATAGCGTC 57.359 40.909 0.00 0.00 0.00 5.19
414 5585 3.427528 TCGAAACAACTGAATAGCGTCAC 59.572 43.478 0.00 0.00 0.00 3.67
415 5586 3.718036 CGAAACAACTGAATAGCGTCACG 60.718 47.826 0.00 0.00 0.00 4.35
451 5622 0.179145 AACCGCCTAACAGATCGTCG 60.179 55.000 0.00 0.00 0.00 5.12
487 5658 8.469200 TGCTGAATTATGATAAACTTGAAAGGG 58.531 33.333 0.00 0.00 0.00 3.95
494 5665 0.248866 AAACTTGAAAGGGCAACGCG 60.249 50.000 3.53 3.53 37.60 6.01
515 5686 3.604582 GAATCCTCTTCACTGGTTCAGG 58.395 50.000 0.00 0.00 35.51 3.86
529 5705 4.948847 TGGTTCAGGTATCATTCGATCAG 58.051 43.478 0.00 0.00 32.73 2.90
559 5735 8.842358 ACTGAATGTCTCTAAAATAAAACCGA 57.158 30.769 0.00 0.00 0.00 4.69
560 5736 9.280174 ACTGAATGTCTCTAAAATAAAACCGAA 57.720 29.630 0.00 0.00 0.00 4.30
561 5737 9.760660 CTGAATGTCTCTAAAATAAAACCGAAG 57.239 33.333 0.00 0.00 0.00 3.79
562 5738 9.496873 TGAATGTCTCTAAAATAAAACCGAAGA 57.503 29.630 0.00 0.00 0.00 2.87
570 5746 9.643693 TCTAAAATAAAACCGAAGACGAATAGT 57.356 29.630 0.00 0.00 42.66 2.12
575 5758 8.798748 ATAAAACCGAAGACGAATAGTATCAG 57.201 34.615 0.00 0.00 42.66 2.90
579 5762 4.912766 CCGAAGACGAATAGTATCAGAAGC 59.087 45.833 0.00 0.00 42.66 3.86
617 5807 9.078990 TCTCTCATAAACATTATACCTCACGAT 57.921 33.333 0.00 0.00 0.00 3.73
635 5834 8.024285 CCTCACGATCTAATAGAAGTTCATACC 58.976 40.741 5.50 0.00 0.00 2.73
638 5837 8.788806 CACGATCTAATAGAAGTTCATACCTCT 58.211 37.037 5.50 0.00 0.00 3.69
800 6028 7.125507 AGGCATGTTCATCCCAATAATTGTTAA 59.874 33.333 0.00 0.00 0.00 2.01
843 6071 9.727627 GAAAATCATCACATAGAAAATCTCCAC 57.272 33.333 0.00 0.00 0.00 4.02
859 6087 7.893124 AATCTCCACAATCAATCAAGCTTAT 57.107 32.000 0.00 0.00 0.00 1.73
863 6091 9.060347 TCTCCACAATCAATCAAGCTTATAATC 57.940 33.333 0.00 0.00 0.00 1.75
931 6159 1.203523 GGACGCCATTACCATTGCAAA 59.796 47.619 1.71 0.00 0.00 3.68
1082 6805 0.815213 GCTCAATGGACGCCTGCATA 60.815 55.000 0.00 0.00 0.00 3.14
1207 6933 1.797025 ACTAAGCAGGACGCAACTTC 58.203 50.000 0.00 0.00 46.13 3.01
1211 6937 1.598130 GCAGGACGCAACTTCCACT 60.598 57.895 0.00 0.00 41.79 4.00
1540 7266 0.541063 TGCCCGTCAACTACAGGAGA 60.541 55.000 0.00 0.00 0.00 3.71
1623 7349 2.175811 GACGGTGGCAAATGTCGC 59.824 61.111 0.00 0.00 0.00 5.19
1739 7465 1.192146 TTACCTCAACGGCCAGAGCT 61.192 55.000 2.24 0.00 39.73 4.09
1865 7591 2.768253 ACATCTTGCGAGGTTGATGA 57.232 45.000 0.00 0.00 39.44 2.92
1866 7592 3.272574 ACATCTTGCGAGGTTGATGAT 57.727 42.857 0.00 0.00 39.44 2.45
1867 7593 3.614092 ACATCTTGCGAGGTTGATGATT 58.386 40.909 0.00 0.00 39.44 2.57
1872 7602 4.701651 TCTTGCGAGGTTGATGATTTCATT 59.298 37.500 0.00 0.00 36.57 2.57
1889 11614 9.083422 TGATTTCATTTGTGGGTACTCAAATAA 57.917 29.630 16.90 12.28 39.25 1.40
1890 11615 9.921637 GATTTCATTTGTGGGTACTCAAATAAA 57.078 29.630 16.90 11.39 39.25 1.40
1926 11651 5.452341 TTCATCCGAGGCTATATCTCCTA 57.548 43.478 0.00 0.00 31.71 2.94
1979 11704 5.295787 TGTCCAAGTTTGTGTACTTAGCTTG 59.704 40.000 0.00 3.68 36.24 4.01
1981 11706 4.537015 CAAGTTTGTGTACTTAGCTTGCC 58.463 43.478 0.00 0.00 36.24 4.52
2038 11763 1.680735 GTGTGTGCCCAACATCTCAAA 59.319 47.619 0.00 0.00 41.97 2.69
2044 11769 4.646945 TGTGCCCAACATCTCAAAAGTAAA 59.353 37.500 0.00 0.00 32.36 2.01
2047 11772 6.705825 GTGCCCAACATCTCAAAAGTAAATTT 59.294 34.615 0.00 0.00 0.00 1.82
2048 11773 7.870445 GTGCCCAACATCTCAAAAGTAAATTTA 59.130 33.333 0.00 0.00 0.00 1.40
2049 11774 8.424918 TGCCCAACATCTCAAAAGTAAATTTAA 58.575 29.630 0.00 0.00 0.00 1.52
2050 11775 9.267084 GCCCAACATCTCAAAAGTAAATTTAAA 57.733 29.630 0.00 0.00 0.00 1.52
2076 12983 8.985315 TGGTTCTGAAGAATATTGCATTCTAT 57.015 30.769 1.58 0.00 37.38 1.98
2077 12984 8.843262 TGGTTCTGAAGAATATTGCATTCTATG 58.157 33.333 1.58 0.00 37.38 2.23
2081 12988 8.654094 TCTGAAGAATATTGCATTCTATGAGGA 58.346 33.333 1.58 0.00 37.38 3.71
2119 13026 9.453572 AAGATATTCACTCAATTTAGAAGTGCA 57.546 29.630 0.00 0.00 0.00 4.57
2120 13027 9.107177 AGATATTCACTCAATTTAGAAGTGCAG 57.893 33.333 0.00 0.00 0.00 4.41
2123 13030 6.109156 TCACTCAATTTAGAAGTGCAGGTA 57.891 37.500 0.00 0.00 0.00 3.08
2124 13031 6.530120 TCACTCAATTTAGAAGTGCAGGTAA 58.470 36.000 0.00 0.00 0.00 2.85
2153 13060 7.948034 TTATAAAGGTTTGAACATGTAGGGG 57.052 36.000 0.00 0.00 0.00 4.79
2157 13064 5.327737 AGGTTTGAACATGTAGGGGTTTA 57.672 39.130 0.00 0.00 0.00 2.01
2158 13065 5.074804 AGGTTTGAACATGTAGGGGTTTAC 58.925 41.667 0.00 0.00 0.00 2.01
2160 13067 6.044637 AGGTTTGAACATGTAGGGGTTTACTA 59.955 38.462 0.00 0.00 0.00 1.82
2161 13068 6.888088 GGTTTGAACATGTAGGGGTTTACTAT 59.112 38.462 0.00 0.00 0.00 2.12
2166 13073 9.675464 TGAACATGTAGGGGTTTACTATAAAAG 57.325 33.333 0.00 0.00 0.00 2.27
2221 13347 7.539034 AATAAAATAAGGGATATGTGGTGGC 57.461 36.000 0.00 0.00 0.00 5.01
2224 13350 2.736670 AAGGGATATGTGGTGGCTTC 57.263 50.000 0.00 0.00 0.00 3.86
2225 13351 1.898863 AGGGATATGTGGTGGCTTCT 58.101 50.000 0.00 0.00 0.00 2.85
2228 13354 3.983410 AGGGATATGTGGTGGCTTCTAAT 59.017 43.478 0.00 0.00 0.00 1.73
2230 13356 4.520492 GGGATATGTGGTGGCTTCTAATTG 59.480 45.833 0.00 0.00 0.00 2.32
2231 13357 4.520492 GGATATGTGGTGGCTTCTAATTGG 59.480 45.833 0.00 0.00 0.00 3.16
2234 13360 2.307392 TGTGGTGGCTTCTAATTGGCTA 59.693 45.455 0.00 0.00 0.00 3.93
2235 13361 2.945668 GTGGTGGCTTCTAATTGGCTAG 59.054 50.000 0.00 0.00 0.00 3.42
2236 13362 2.576191 TGGTGGCTTCTAATTGGCTAGT 59.424 45.455 0.00 0.00 0.00 2.57
2237 13363 3.010138 TGGTGGCTTCTAATTGGCTAGTT 59.990 43.478 0.00 0.00 0.00 2.24
2239 13365 4.518249 GTGGCTTCTAATTGGCTAGTTCT 58.482 43.478 0.00 0.00 0.00 3.01
2240 13366 4.333926 GTGGCTTCTAATTGGCTAGTTCTG 59.666 45.833 0.00 0.00 0.00 3.02
2241 13367 3.879892 GGCTTCTAATTGGCTAGTTCTGG 59.120 47.826 0.00 0.00 0.00 3.86
2244 13370 5.065346 GCTTCTAATTGGCTAGTTCTGGTTC 59.935 44.000 0.00 0.00 0.00 3.62
2247 13373 2.743636 TTGGCTAGTTCTGGTTCGAG 57.256 50.000 0.00 0.00 0.00 4.04
2248 13374 0.895530 TGGCTAGTTCTGGTTCGAGG 59.104 55.000 0.00 0.00 0.00 4.63
2249 13375 0.460459 GGCTAGTTCTGGTTCGAGGC 60.460 60.000 0.00 0.00 0.00 4.70
2250 13376 0.246635 GCTAGTTCTGGTTCGAGGCA 59.753 55.000 0.00 0.00 0.00 4.75
2251 13377 1.737363 GCTAGTTCTGGTTCGAGGCAG 60.737 57.143 0.00 0.00 0.00 4.85
2253 13379 0.832135 AGTTCTGGTTCGAGGCAGGA 60.832 55.000 0.00 0.00 0.00 3.86
2255 13381 0.034896 TTCTGGTTCGAGGCAGGAAC 59.965 55.000 10.98 10.98 42.32 3.62
2256 13382 1.118965 TCTGGTTCGAGGCAGGAACA 61.119 55.000 18.29 1.56 44.29 3.18
2258 13384 1.207089 CTGGTTCGAGGCAGGAACATA 59.793 52.381 18.29 8.85 44.29 2.29
2259 13385 1.626321 TGGTTCGAGGCAGGAACATAA 59.374 47.619 18.29 5.04 44.29 1.90
2262 13388 2.614057 GTTCGAGGCAGGAACATAATGG 59.386 50.000 13.62 0.00 42.53 3.16
2263 13389 2.115427 TCGAGGCAGGAACATAATGGA 58.885 47.619 0.00 0.00 0.00 3.41
2266 13392 3.682718 CGAGGCAGGAACATAATGGAGTT 60.683 47.826 0.00 0.00 0.00 3.01
2267 13393 3.624777 AGGCAGGAACATAATGGAGTTG 58.375 45.455 0.00 0.00 0.00 3.16
2271 13397 4.380867 GCAGGAACATAATGGAGTTGTTGG 60.381 45.833 0.00 0.00 33.92 3.77
2272 13398 5.009631 CAGGAACATAATGGAGTTGTTGGA 58.990 41.667 0.00 0.00 33.92 3.53
2273 13399 5.010282 AGGAACATAATGGAGTTGTTGGAC 58.990 41.667 0.00 0.00 33.92 4.02
2274 13400 5.010282 GGAACATAATGGAGTTGTTGGACT 58.990 41.667 0.00 0.00 33.92 3.85
2277 13403 7.148239 GGAACATAATGGAGTTGTTGGACTTAG 60.148 40.741 0.00 0.00 33.92 2.18
2278 13404 6.180472 ACATAATGGAGTTGTTGGACTTAGG 58.820 40.000 0.00 0.00 0.00 2.69
2279 13405 2.561478 TGGAGTTGTTGGACTTAGGC 57.439 50.000 0.00 0.00 0.00 3.93
2280 13406 2.054799 TGGAGTTGTTGGACTTAGGCT 58.945 47.619 0.00 0.00 0.00 4.58
2281 13407 2.224523 TGGAGTTGTTGGACTTAGGCTG 60.225 50.000 0.00 0.00 0.00 4.85
2282 13408 2.427506 GAGTTGTTGGACTTAGGCTGG 58.572 52.381 0.00 0.00 0.00 4.85
2283 13409 1.774856 AGTTGTTGGACTTAGGCTGGT 59.225 47.619 0.00 0.00 0.00 4.00
2284 13410 2.152016 GTTGTTGGACTTAGGCTGGTC 58.848 52.381 12.10 12.10 0.00 4.02
2287 13413 3.178046 TGTTGGACTTAGGCTGGTCATA 58.822 45.455 18.99 8.70 34.49 2.15
2288 13414 3.197766 TGTTGGACTTAGGCTGGTCATAG 59.802 47.826 18.99 2.27 34.49 2.23
2289 13415 1.762957 TGGACTTAGGCTGGTCATAGC 59.237 52.381 18.99 0.00 42.94 2.97
2290 13416 1.269831 GGACTTAGGCTGGTCATAGCG 60.270 57.143 18.99 0.00 44.60 4.26
2293 13419 1.407656 TTAGGCTGGTCATAGCGGGG 61.408 60.000 0.00 0.00 44.60 5.73
2297 13423 0.905357 GCTGGTCATAGCGGGGATAT 59.095 55.000 0.00 0.00 33.46 1.63
2302 13428 3.259876 TGGTCATAGCGGGGATATGTTAC 59.740 47.826 1.40 0.00 34.12 2.50
2305 13431 5.163540 GGTCATAGCGGGGATATGTTACTAG 60.164 48.000 1.40 0.00 34.12 2.57
2306 13432 5.418209 GTCATAGCGGGGATATGTTACTAGT 59.582 44.000 0.00 0.00 34.12 2.57
2307 13433 5.651139 TCATAGCGGGGATATGTTACTAGTC 59.349 44.000 0.00 0.00 34.12 2.59
2308 13434 4.115398 AGCGGGGATATGTTACTAGTCT 57.885 45.455 0.00 0.00 0.00 3.24
2310 13436 5.828871 AGCGGGGATATGTTACTAGTCTAT 58.171 41.667 0.00 0.00 0.00 1.98
2311 13437 5.652891 AGCGGGGATATGTTACTAGTCTATG 59.347 44.000 0.00 0.00 0.00 2.23
2312 13438 5.418209 GCGGGGATATGTTACTAGTCTATGT 59.582 44.000 0.00 0.00 0.00 2.29
2313 13439 6.071503 GCGGGGATATGTTACTAGTCTATGTT 60.072 42.308 0.00 0.00 0.00 2.71
2314 13440 7.121759 GCGGGGATATGTTACTAGTCTATGTTA 59.878 40.741 0.00 0.00 0.00 2.41
2315 13441 8.457261 CGGGGATATGTTACTAGTCTATGTTAC 58.543 40.741 0.00 0.00 0.00 2.50
2329 13455 8.851541 AGTCTATGTTACTACCTCTATAGTGC 57.148 38.462 0.00 0.00 36.09 4.40
2331 13457 9.233649 GTCTATGTTACTACCTCTATAGTGCAT 57.766 37.037 0.00 0.00 36.09 3.96
2366 14196 9.386122 AGATTAGTATCATAGGTGGTCTCATTT 57.614 33.333 0.00 0.00 32.95 2.32
2372 14202 9.209175 GTATCATAGGTGGTCTCATTTATTGTC 57.791 37.037 0.00 0.00 0.00 3.18
2378 14208 5.068198 GGTGGTCTCATTTATTGTCATGCAT 59.932 40.000 0.00 0.00 0.00 3.96
2394 14224 6.490566 TCATGCATGACACATAATAGCATC 57.509 37.500 25.42 0.00 39.00 3.91
2396 14226 5.678132 TGCATGACACATAATAGCATCAC 57.322 39.130 0.00 0.00 0.00 3.06
2398 14228 5.766174 TGCATGACACATAATAGCATCACAT 59.234 36.000 0.00 0.00 0.00 3.21
2401 14231 8.291740 GCATGACACATAATAGCATCACATTTA 58.708 33.333 0.00 0.00 0.00 1.40
2461 15934 9.974980 CATCTCTCTCTTCTTTAATTACCTACC 57.025 37.037 0.00 0.00 0.00 3.18
2464 15937 8.660295 TCTCTCTTCTTTAATTACCTACCACA 57.340 34.615 0.00 0.00 0.00 4.17
2465 15938 9.268282 TCTCTCTTCTTTAATTACCTACCACAT 57.732 33.333 0.00 0.00 0.00 3.21
2469 15942 9.609346 TCTTCTTTAATTACCTACCACATAAGC 57.391 33.333 0.00 0.00 0.00 3.09
2470 15943 9.391006 CTTCTTTAATTACCTACCACATAAGCA 57.609 33.333 0.00 0.00 0.00 3.91
2471 15944 9.914834 TTCTTTAATTACCTACCACATAAGCAT 57.085 29.630 0.00 0.00 0.00 3.79
2472 15945 9.337396 TCTTTAATTACCTACCACATAAGCATG 57.663 33.333 0.00 0.00 38.21 4.06
2475 15948 7.954666 AATTACCTACCACATAAGCATGTTT 57.045 32.000 0.00 0.00 42.98 2.83
2485 15958 3.667087 GCATGTTTGCGAGTCCCA 58.333 55.556 0.00 0.00 39.49 4.37
2486 15959 1.956043 GCATGTTTGCGAGTCCCAA 59.044 52.632 0.00 0.00 39.49 4.12
2487 15960 0.109597 GCATGTTTGCGAGTCCCAAG 60.110 55.000 0.00 0.00 39.49 3.61
2488 15961 1.238439 CATGTTTGCGAGTCCCAAGT 58.762 50.000 0.00 0.00 0.00 3.16
2490 15963 1.282875 GTTTGCGAGTCCCAAGTGC 59.717 57.895 0.00 0.00 0.00 4.40
2491 15964 1.153066 TTTGCGAGTCCCAAGTGCA 60.153 52.632 0.00 0.00 0.00 4.57
2494 15967 1.375908 GCGAGTCCCAAGTGCATGA 60.376 57.895 0.00 0.00 0.00 3.07
2495 15968 0.745845 GCGAGTCCCAAGTGCATGAT 60.746 55.000 0.00 0.00 0.00 2.45
2497 15970 2.205074 CGAGTCCCAAGTGCATGATAC 58.795 52.381 0.00 0.00 0.00 2.24
2498 15971 2.159043 CGAGTCCCAAGTGCATGATACT 60.159 50.000 0.00 0.00 0.00 2.12
2499 15972 3.068165 CGAGTCCCAAGTGCATGATACTA 59.932 47.826 0.00 0.00 0.00 1.82
2500 15973 4.372656 GAGTCCCAAGTGCATGATACTAC 58.627 47.826 0.00 0.00 0.00 2.73
2502 15975 4.471386 AGTCCCAAGTGCATGATACTACTT 59.529 41.667 0.00 0.00 33.94 2.24
2503 15976 5.661312 AGTCCCAAGTGCATGATACTACTTA 59.339 40.000 0.00 0.00 32.53 2.24
2505 15978 6.425114 GTCCCAAGTGCATGATACTACTTATG 59.575 42.308 0.00 0.00 32.53 1.90
2506 15979 6.099701 TCCCAAGTGCATGATACTACTTATGT 59.900 38.462 0.00 0.00 32.53 2.29
2507 15980 6.767902 CCCAAGTGCATGATACTACTTATGTT 59.232 38.462 0.00 0.00 32.53 2.71
2509 15982 8.765219 CCAAGTGCATGATACTACTTATGTTAC 58.235 37.037 0.00 0.00 32.53 2.50
2510 15983 8.765219 CAAGTGCATGATACTACTTATGTTACC 58.235 37.037 0.00 0.00 32.53 2.85
2511 15984 7.442656 AGTGCATGATACTACTTATGTTACCC 58.557 38.462 0.00 0.00 0.00 3.69
2512 15985 6.649557 GTGCATGATACTACTTATGTTACCCC 59.350 42.308 0.00 0.00 0.00 4.95
2513 15986 6.171213 GCATGATACTACTTATGTTACCCCC 58.829 44.000 0.00 0.00 0.00 5.40
2514 15987 6.239772 GCATGATACTACTTATGTTACCCCCA 60.240 42.308 0.00 0.00 0.00 4.96
2515 15988 6.736110 TGATACTACTTATGTTACCCCCAC 57.264 41.667 0.00 0.00 0.00 4.61
2518 15991 8.236643 TGATACTACTTATGTTACCCCCACTAT 58.763 37.037 0.00 0.00 0.00 2.12
2519 15992 6.742559 ACTACTTATGTTACCCCCACTATG 57.257 41.667 0.00 0.00 0.00 2.23
2520 15993 5.605488 ACTACTTATGTTACCCCCACTATGG 59.395 44.000 0.00 0.00 37.25 2.74
2522 15995 0.850784 ATGTTACCCCCACTATGGCC 59.149 55.000 0.00 0.00 35.79 5.36
2524 15997 0.182775 GTTACCCCCACTATGGCCAG 59.817 60.000 13.05 0.00 35.79 4.85
2525 15998 1.641552 TTACCCCCACTATGGCCAGC 61.642 60.000 13.05 0.00 35.79 4.85
2526 15999 4.209866 CCCCCACTATGGCCAGCC 62.210 72.222 13.05 0.38 35.79 4.85
2527 16000 3.099170 CCCCACTATGGCCAGCCT 61.099 66.667 13.05 0.00 35.79 4.58
2528 16001 2.693871 CCCCACTATGGCCAGCCTT 61.694 63.158 13.05 6.25 35.79 4.35
2529 16002 1.352622 CCCCACTATGGCCAGCCTTA 61.353 60.000 13.05 7.16 35.79 2.69
2530 16003 0.550914 CCCACTATGGCCAGCCTTAA 59.449 55.000 13.05 0.00 35.79 1.85
2531 16004 1.064017 CCCACTATGGCCAGCCTTAAA 60.064 52.381 13.05 0.00 35.79 1.52
2532 16005 2.301346 CCACTATGGCCAGCCTTAAAG 58.699 52.381 13.05 2.22 36.94 1.85
2533 16006 2.301346 CACTATGGCCAGCCTTAAAGG 58.699 52.381 13.05 0.00 38.80 3.11
2535 16008 1.494721 CTATGGCCAGCCTTAAAGGGA 59.505 52.381 13.05 0.00 35.37 4.20
2536 16009 0.936691 ATGGCCAGCCTTAAAGGGAT 59.063 50.000 13.05 0.00 35.37 3.85
2537 16010 0.033208 TGGCCAGCCTTAAAGGGATG 60.033 55.000 0.00 0.23 41.88 3.51
2543 16016 1.780503 GCCTTAAAGGGATGGCATGT 58.219 50.000 3.81 0.00 44.34 3.21
2544 16017 1.683385 GCCTTAAAGGGATGGCATGTC 59.317 52.381 3.81 0.00 44.34 3.06
2545 16018 2.310538 CCTTAAAGGGATGGCATGTCC 58.689 52.381 3.81 6.53 34.92 4.02
2546 16019 2.091665 CCTTAAAGGGATGGCATGTCCT 60.092 50.000 3.81 9.02 36.00 3.85
2547 16020 2.734755 TAAAGGGATGGCATGTCCTG 57.265 50.000 16.73 0.00 36.00 3.86
2548 16021 1.002069 AAAGGGATGGCATGTCCTGA 58.998 50.000 16.73 0.00 36.00 3.86
2550 16023 1.229131 AGGGATGGCATGTCCTGATT 58.771 50.000 15.65 0.00 36.00 2.57
2552 16158 1.325355 GGATGGCATGTCCTGATTGG 58.675 55.000 3.81 0.00 35.26 3.16
2565 16171 4.870636 TCCTGATTGGATGGTAATGCTTT 58.129 39.130 0.00 0.00 40.56 3.51
2569 16175 5.432645 TGATTGGATGGTAATGCTTTACGA 58.567 37.500 14.32 11.81 38.90 3.43
2573 16179 5.620206 TGGATGGTAATGCTTTACGATCAT 58.380 37.500 30.63 21.42 46.83 2.45
2575 16181 7.220740 TGGATGGTAATGCTTTACGATCATAA 58.779 34.615 30.63 20.46 46.83 1.90
2577 16183 8.730680 GGATGGTAATGCTTTACGATCATAAAT 58.269 33.333 30.63 10.30 46.83 1.40
2578 16184 9.546909 GATGGTAATGCTTTACGATCATAAATG 57.453 33.333 27.71 0.00 45.51 2.32
2579 16185 8.669946 TGGTAATGCTTTACGATCATAAATGA 57.330 30.769 14.32 0.00 38.90 2.57
2583 16189 6.031549 TGCTTTACGATCATAAATGACGTG 57.968 37.500 20.61 11.55 41.21 4.49
2587 16193 3.766151 ACGATCATAAATGACGTGACGT 58.234 40.909 11.70 11.70 45.10 4.34
2590 16196 4.031314 CGATCATAAATGACGTGACGTTGT 59.969 41.667 13.44 0.59 41.37 3.32
2591 16197 4.639189 TCATAAATGACGTGACGTTGTG 57.361 40.909 13.44 4.96 41.37 3.33
2592 16198 4.052608 TCATAAATGACGTGACGTTGTGT 58.947 39.130 13.44 1.64 41.37 3.72
2593 16199 2.730183 AAATGACGTGACGTTGTGTG 57.270 45.000 13.44 0.00 41.37 3.82
2595 16201 2.148916 ATGACGTGACGTTGTGTGAT 57.851 45.000 13.44 0.00 41.37 3.06
2597 16203 1.590698 TGACGTGACGTTGTGTGATTG 59.409 47.619 13.44 0.00 41.37 2.67
2599 16205 0.934496 CGTGACGTTGTGTGATTGGT 59.066 50.000 0.00 0.00 0.00 3.67
2600 16206 1.329292 CGTGACGTTGTGTGATTGGTT 59.671 47.619 0.00 0.00 0.00 3.67
2601 16207 2.715268 GTGACGTTGTGTGATTGGTTG 58.285 47.619 0.00 0.00 0.00 3.77
2602 16208 2.353269 GTGACGTTGTGTGATTGGTTGA 59.647 45.455 0.00 0.00 0.00 3.18
2603 16209 3.003275 GTGACGTTGTGTGATTGGTTGAT 59.997 43.478 0.00 0.00 0.00 2.57
2604 16210 4.212425 GTGACGTTGTGTGATTGGTTGATA 59.788 41.667 0.00 0.00 0.00 2.15
2605 16211 4.212425 TGACGTTGTGTGATTGGTTGATAC 59.788 41.667 0.00 0.00 0.00 2.24
2606 16212 3.500680 ACGTTGTGTGATTGGTTGATACC 59.499 43.478 0.00 0.00 45.26 2.73
2631 16300 8.462016 CCATTTCTAGTGGTTTCTAATCCTTTG 58.538 37.037 0.00 0.00 31.96 2.77
2634 16303 7.979444 TCTAGTGGTTTCTAATCCTTTGTTG 57.021 36.000 0.00 0.00 0.00 3.33
2636 16305 7.996644 TCTAGTGGTTTCTAATCCTTTGTTGTT 59.003 33.333 0.00 0.00 0.00 2.83
2638 16307 5.983118 GTGGTTTCTAATCCTTTGTTGTTGG 59.017 40.000 0.00 0.00 0.00 3.77
2640 16309 6.155393 TGGTTTCTAATCCTTTGTTGTTGGTT 59.845 34.615 0.00 0.00 0.00 3.67
2641 16310 7.045416 GGTTTCTAATCCTTTGTTGTTGGTTT 58.955 34.615 0.00 0.00 0.00 3.27
2647 16316 5.682943 TCCTTTGTTGTTGGTTTAGATCG 57.317 39.130 0.00 0.00 0.00 3.69
2651 16320 6.017770 CCTTTGTTGTTGGTTTAGATCGTACA 60.018 38.462 0.00 0.00 0.00 2.90
2652 16321 6.922247 TTGTTGTTGGTTTAGATCGTACAA 57.078 33.333 0.00 0.00 0.00 2.41
2653 16322 7.499321 TTGTTGTTGGTTTAGATCGTACAAT 57.501 32.000 0.00 0.00 0.00 2.71
2654 16323 8.604640 TTGTTGTTGGTTTAGATCGTACAATA 57.395 30.769 0.00 0.00 0.00 1.90
2655 16324 8.020861 TGTTGTTGGTTTAGATCGTACAATAC 57.979 34.615 0.00 0.00 0.00 1.89
2656 16325 7.656542 TGTTGTTGGTTTAGATCGTACAATACA 59.343 33.333 0.00 0.00 0.00 2.29
2658 16327 6.308524 TGTTGGTTTAGATCGTACAATACACG 59.691 38.462 0.00 0.00 40.72 4.49
2660 16329 4.741676 GGTTTAGATCGTACAATACACGGG 59.258 45.833 0.00 0.00 39.82 5.28
2662 16331 2.029623 AGATCGTACAATACACGGGCT 58.970 47.619 0.00 0.00 39.82 5.19
2663 16332 3.216800 AGATCGTACAATACACGGGCTA 58.783 45.455 0.00 0.00 39.82 3.93
2664 16333 3.252701 AGATCGTACAATACACGGGCTAG 59.747 47.826 0.00 0.00 39.82 3.42
2665 16334 1.677576 TCGTACAATACACGGGCTAGG 59.322 52.381 0.00 0.00 39.82 3.02
2667 16336 1.758862 GTACAATACACGGGCTAGGGT 59.241 52.381 0.00 0.00 0.00 4.34
2668 16337 1.282382 ACAATACACGGGCTAGGGTT 58.718 50.000 0.00 0.00 0.00 4.11
2669 16338 1.631898 ACAATACACGGGCTAGGGTTT 59.368 47.619 0.00 0.00 0.00 3.27
2670 16339 2.285977 CAATACACGGGCTAGGGTTTC 58.714 52.381 0.00 0.00 0.00 2.78
2671 16340 0.462789 ATACACGGGCTAGGGTTTCG 59.537 55.000 0.00 0.00 0.00 3.46
2672 16341 1.606885 TACACGGGCTAGGGTTTCGG 61.607 60.000 0.00 0.00 0.00 4.30
2674 16343 2.125269 CGGGCTAGGGTTTCGGTG 60.125 66.667 0.00 0.00 0.00 4.94
2675 16344 2.437895 GGGCTAGGGTTTCGGTGC 60.438 66.667 0.00 0.00 0.00 5.01
2676 16345 2.669240 GGCTAGGGTTTCGGTGCT 59.331 61.111 0.00 0.00 0.00 4.40
2677 16346 1.449778 GGCTAGGGTTTCGGTGCTC 60.450 63.158 0.00 0.00 0.00 4.26
2679 16348 1.019805 GCTAGGGTTTCGGTGCTCAC 61.020 60.000 0.00 0.00 0.00 3.51
2688 16357 3.001406 GGTGCTCACCGGGGTAGT 61.001 66.667 2.12 0.00 42.29 2.73
2689 16358 2.577593 GTGCTCACCGGGGTAGTC 59.422 66.667 2.12 0.00 0.00 2.59
2690 16359 2.118732 TGCTCACCGGGGTAGTCA 59.881 61.111 2.12 0.17 0.00 3.41
2692 16361 3.015312 GCTCACCGGGGTAGTCACC 62.015 68.421 2.12 0.00 44.96 4.02
2705 16374 3.933332 GGTAGTCACCAAAGATTTCGAGG 59.067 47.826 0.00 0.00 45.04 4.63
2706 16375 4.322499 GGTAGTCACCAAAGATTTCGAGGA 60.322 45.833 0.00 0.00 45.04 3.71
2708 16377 3.071023 AGTCACCAAAGATTTCGAGGACA 59.929 43.478 0.00 0.00 0.00 4.02
2710 16379 3.813166 TCACCAAAGATTTCGAGGACAAC 59.187 43.478 0.00 0.00 0.00 3.32
2711 16380 2.806244 ACCAAAGATTTCGAGGACAACG 59.194 45.455 0.00 0.00 0.00 4.10
2712 16381 3.064207 CCAAAGATTTCGAGGACAACGA 58.936 45.455 0.00 0.00 37.99 3.85
2713 16382 3.120649 CCAAAGATTTCGAGGACAACGAC 60.121 47.826 0.00 0.00 39.46 4.34
2714 16383 1.978542 AGATTTCGAGGACAACGACG 58.021 50.000 0.00 0.00 39.46 5.12
2715 16384 0.365859 GATTTCGAGGACAACGACGC 59.634 55.000 0.00 0.00 39.46 5.19
2717 16386 1.210545 TTTCGAGGACAACGACGCAC 61.211 55.000 0.00 0.00 39.46 5.34
2727 16396 4.266070 CGACGCACGGATCGGGAT 62.266 66.667 5.18 0.00 38.46 3.85
2728 16397 2.106332 GACGCACGGATCGGGATT 59.894 61.111 5.18 0.00 28.17 3.01
2729 16398 2.202878 ACGCACGGATCGGGATTG 60.203 61.111 5.18 0.00 28.17 2.67
2732 16401 1.071471 GCACGGATCGGGATTGGAT 59.929 57.895 5.18 0.00 28.17 3.41
2734 16403 0.603707 CACGGATCGGGATTGGATGG 60.604 60.000 5.18 0.00 28.17 3.51
2735 16404 0.762842 ACGGATCGGGATTGGATGGA 60.763 55.000 5.18 0.00 0.00 3.41
2736 16405 0.615331 CGGATCGGGATTGGATGGAT 59.385 55.000 0.00 0.00 0.00 3.41
2738 16407 1.630369 GGATCGGGATTGGATGGATCA 59.370 52.381 0.00 0.00 36.18 2.92
2739 16408 2.040278 GGATCGGGATTGGATGGATCAA 59.960 50.000 0.00 0.00 36.18 2.57
2741 16410 1.202639 TCGGGATTGGATGGATCAACG 60.203 52.381 0.00 0.00 0.00 4.10
2742 16411 1.475034 CGGGATTGGATGGATCAACGT 60.475 52.381 0.00 0.00 0.00 3.99
2744 16413 2.358898 GGGATTGGATGGATCAACGTTG 59.641 50.000 22.35 22.35 0.00 4.10
2745 16414 2.223572 GGATTGGATGGATCAACGTTGC 60.224 50.000 23.47 10.28 0.00 4.17
2746 16415 0.801872 TTGGATGGATCAACGTTGCG 59.198 50.000 23.47 0.77 0.00 4.85
2747 16416 0.036858 TGGATGGATCAACGTTGCGA 60.037 50.000 23.47 7.83 0.00 5.10
2750 16419 1.003545 GATGGATCAACGTTGCGATGG 60.004 52.381 23.47 0.00 30.83 3.51
2752 16421 0.373716 GGATCAACGTTGCGATGGTC 59.626 55.000 23.47 6.14 38.67 4.02
2754 16423 0.389296 ATCAACGTTGCGATGGTCGA 60.389 50.000 23.47 3.11 43.74 4.20
2755 16424 1.129809 CAACGTTGCGATGGTCGAC 59.870 57.895 16.51 7.13 43.74 4.20
2757 16426 1.282248 AACGTTGCGATGGTCGACAG 61.282 55.000 18.91 6.55 43.74 3.51
2758 16427 1.733041 CGTTGCGATGGTCGACAGT 60.733 57.895 18.91 4.58 43.74 3.55
2759 16428 1.781555 GTTGCGATGGTCGACAGTG 59.218 57.895 18.91 4.94 43.74 3.66
2760 16429 2.027073 TTGCGATGGTCGACAGTGC 61.027 57.895 18.91 15.15 43.74 4.40
2761 16430 2.125912 GCGATGGTCGACAGTGCT 60.126 61.111 18.91 0.00 43.74 4.40
2762 16431 2.161486 GCGATGGTCGACAGTGCTC 61.161 63.158 18.91 5.09 43.74 4.26
2763 16432 1.508545 CGATGGTCGACAGTGCTCT 59.491 57.895 18.91 0.00 43.74 4.09
2764 16433 0.109086 CGATGGTCGACAGTGCTCTT 60.109 55.000 18.91 0.00 43.74 2.85
2765 16434 1.634702 GATGGTCGACAGTGCTCTTC 58.365 55.000 18.91 2.87 0.00 2.87
2766 16435 0.969149 ATGGTCGACAGTGCTCTTCA 59.031 50.000 18.91 2.70 0.00 3.02
2767 16436 0.969149 TGGTCGACAGTGCTCTTCAT 59.031 50.000 18.91 0.00 0.00 2.57
2768 16437 1.337167 TGGTCGACAGTGCTCTTCATG 60.337 52.381 18.91 0.00 0.00 3.07
2770 16439 0.969149 TCGACAGTGCTCTTCATGGT 59.031 50.000 0.00 0.00 0.00 3.55
2772 16441 0.801251 GACAGTGCTCTTCATGGTGC 59.199 55.000 0.00 0.00 0.00 5.01
2773 16442 0.952497 ACAGTGCTCTTCATGGTGCG 60.952 55.000 0.00 0.00 0.00 5.34
2774 16443 1.376424 AGTGCTCTTCATGGTGCGG 60.376 57.895 0.00 0.00 0.00 5.69
2779 16962 0.169672 CTCTTCATGGTGCGGCAAAG 59.830 55.000 3.23 4.49 0.00 2.77
2783 16966 0.322366 TCATGGTGCGGCAAAGATGA 60.322 50.000 3.23 9.80 0.00 2.92
2790 16973 1.508088 CGGCAAAGATGAAGGTGGC 59.492 57.895 0.00 0.00 0.00 5.01
2791 16974 1.243342 CGGCAAAGATGAAGGTGGCA 61.243 55.000 0.00 0.00 36.40 4.92
2792 16975 1.188863 GGCAAAGATGAAGGTGGCAT 58.811 50.000 0.00 0.00 36.61 4.40
2793 16976 1.551883 GGCAAAGATGAAGGTGGCATT 59.448 47.619 0.00 0.00 36.61 3.56
2794 16977 2.613691 GCAAAGATGAAGGTGGCATTG 58.386 47.619 0.00 0.00 0.00 2.82
2798 16981 1.304381 ATGAAGGTGGCATTGGCGT 60.304 52.632 5.68 0.00 42.47 5.68
2800 16983 3.631487 GAAGGTGGCATTGGCGTGC 62.631 63.158 5.68 6.17 44.31 5.34
2801 16984 4.666253 AGGTGGCATTGGCGTGCT 62.666 61.111 13.29 0.00 44.45 4.40
2802 16985 3.683937 GGTGGCATTGGCGTGCTT 61.684 61.111 13.29 0.00 44.45 3.91
2806 16989 4.440127 GCATTGGCGTGCTTGGGG 62.440 66.667 7.35 0.00 41.82 4.96
2807 16990 3.762247 CATTGGCGTGCTTGGGGG 61.762 66.667 0.00 0.00 0.00 5.40
2808 16991 4.299796 ATTGGCGTGCTTGGGGGT 62.300 61.111 0.00 0.00 0.00 4.95
2811 16994 4.966787 GGCGTGCTTGGGGGTTGA 62.967 66.667 0.00 0.00 0.00 3.18
2812 16995 3.670377 GCGTGCTTGGGGGTTGAC 61.670 66.667 0.00 0.00 0.00 3.18
2813 16996 3.353836 CGTGCTTGGGGGTTGACG 61.354 66.667 0.00 0.00 0.00 4.35
2814 16997 2.112297 GTGCTTGGGGGTTGACGA 59.888 61.111 0.00 0.00 0.00 4.20
2815 16998 1.966451 GTGCTTGGGGGTTGACGAG 60.966 63.158 0.00 0.00 0.00 4.18
2818 17001 0.744771 GCTTGGGGGTTGACGAGATC 60.745 60.000 0.00 0.00 0.00 2.75
2819 17002 0.613260 CTTGGGGGTTGACGAGATCA 59.387 55.000 0.00 0.00 34.65 2.92
2820 17003 0.613260 TTGGGGGTTGACGAGATCAG 59.387 55.000 0.00 0.00 38.99 2.90
2822 17005 1.153349 GGGGTTGACGAGATCAGGC 60.153 63.158 0.00 0.00 38.99 4.85
2824 17007 1.519455 GGTTGACGAGATCAGGCGG 60.519 63.158 0.00 0.00 38.99 6.13
2826 17009 0.108804 GTTGACGAGATCAGGCGGAA 60.109 55.000 0.00 0.00 38.99 4.30
2827 17010 0.606096 TTGACGAGATCAGGCGGAAA 59.394 50.000 0.00 0.00 38.99 3.13
2828 17011 0.108804 TGACGAGATCAGGCGGAAAC 60.109 55.000 0.00 0.00 31.91 2.78
2829 17012 0.173708 GACGAGATCAGGCGGAAACT 59.826 55.000 0.00 0.00 0.00 2.66
2830 17013 0.608640 ACGAGATCAGGCGGAAACTT 59.391 50.000 0.00 0.00 0.00 2.66
2832 17015 2.232941 ACGAGATCAGGCGGAAACTTTA 59.767 45.455 0.00 0.00 0.00 1.85
2833 17016 2.603560 CGAGATCAGGCGGAAACTTTAC 59.396 50.000 0.00 0.00 0.00 2.01
2835 17018 4.000988 GAGATCAGGCGGAAACTTTACAA 58.999 43.478 0.00 0.00 0.00 2.41
2836 17019 3.751698 AGATCAGGCGGAAACTTTACAAC 59.248 43.478 0.00 0.00 0.00 3.32
2837 17020 2.920524 TCAGGCGGAAACTTTACAACA 58.079 42.857 0.00 0.00 0.00 3.33
2839 17022 2.616842 CAGGCGGAAACTTTACAACACT 59.383 45.455 0.00 0.00 0.00 3.55
2840 17023 3.810941 CAGGCGGAAACTTTACAACACTA 59.189 43.478 0.00 0.00 0.00 2.74
2841 17024 3.811497 AGGCGGAAACTTTACAACACTAC 59.189 43.478 0.00 0.00 0.00 2.73
2842 17025 3.560896 GGCGGAAACTTTACAACACTACA 59.439 43.478 0.00 0.00 0.00 2.74
2843 17026 4.035441 GGCGGAAACTTTACAACACTACAA 59.965 41.667 0.00 0.00 0.00 2.41
2844 17027 5.278120 GGCGGAAACTTTACAACACTACAAT 60.278 40.000 0.00 0.00 0.00 2.71
2845 17028 5.623673 GCGGAAACTTTACAACACTACAATG 59.376 40.000 0.00 0.00 0.00 2.82
2846 17029 6.512091 GCGGAAACTTTACAACACTACAATGA 60.512 38.462 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 5337 3.293311 ACGTGTGAACGCTATTGTACT 57.707 42.857 0.00 0.00 36.44 2.73
224 5341 2.991190 AGGTTACGTGTGAACGCTATTG 59.009 45.455 0.00 0.00 36.44 1.90
248 5365 2.125461 TGCTAATCGTCATGCTCTCG 57.875 50.000 0.00 0.00 0.00 4.04
293 5411 2.159585 TGCAATCATTTTCGGCGTACAG 60.160 45.455 6.85 0.00 0.00 2.74
318 5437 2.545526 ACTGTCAGAACGTCATTGCTTG 59.454 45.455 6.91 0.00 0.00 4.01
371 5490 4.464947 GAATACTCAATCCTCTTTGGGGG 58.535 47.826 0.00 0.00 36.20 5.40
373 5492 5.023533 TCGAATACTCAATCCTCTTTGGG 57.976 43.478 0.00 0.00 36.20 4.12
382 5553 9.907576 CTATTCAGTTGTTTCGAATACTCAATC 57.092 33.333 0.00 0.00 31.94 2.67
383 5554 8.391106 GCTATTCAGTTGTTTCGAATACTCAAT 58.609 33.333 0.00 4.52 31.94 2.57
384 5555 7.411480 CGCTATTCAGTTGTTTCGAATACTCAA 60.411 37.037 0.00 0.00 31.94 3.02
385 5556 6.034577 CGCTATTCAGTTGTTTCGAATACTCA 59.965 38.462 0.00 0.00 31.94 3.41
386 5557 6.034683 ACGCTATTCAGTTGTTTCGAATACTC 59.965 38.462 0.00 0.00 31.94 2.59
387 5558 5.867716 ACGCTATTCAGTTGTTTCGAATACT 59.132 36.000 0.00 0.27 31.94 2.12
388 5559 6.091123 ACGCTATTCAGTTGTTTCGAATAC 57.909 37.500 0.00 1.04 31.94 1.89
409 5580 2.159707 AGCGAAAATCATTTCCGTGACG 60.160 45.455 0.00 0.00 41.58 4.35
412 5583 3.469899 TGAGCGAAAATCATTTCCGTG 57.530 42.857 0.00 0.00 41.58 4.94
414 5585 3.171277 GGTTGAGCGAAAATCATTTCCG 58.829 45.455 0.00 0.00 41.58 4.30
415 5586 3.171277 CGGTTGAGCGAAAATCATTTCC 58.829 45.455 0.00 0.00 41.58 3.13
451 5622 3.250762 TCATAATTCAGCAATACCAGCGC 59.749 43.478 0.00 0.00 37.01 5.92
487 5658 0.095417 GTGAAGAGGATTCGCGTTGC 59.905 55.000 5.77 0.00 0.00 4.17
494 5665 3.008485 ACCTGAACCAGTGAAGAGGATTC 59.992 47.826 0.00 0.00 0.00 2.52
556 5732 4.912766 GCTTCTGATACTATTCGTCTTCGG 59.087 45.833 0.00 0.00 37.69 4.30
557 5733 4.912766 GGCTTCTGATACTATTCGTCTTCG 59.087 45.833 0.00 0.00 38.55 3.79
558 5734 5.918011 CAGGCTTCTGATACTATTCGTCTTC 59.082 44.000 0.00 0.00 40.86 2.87
559 5735 5.361285 ACAGGCTTCTGATACTATTCGTCTT 59.639 40.000 0.00 0.00 40.86 3.01
560 5736 4.890581 ACAGGCTTCTGATACTATTCGTCT 59.109 41.667 0.00 0.00 40.86 4.18
561 5737 5.009210 AGACAGGCTTCTGATACTATTCGTC 59.991 44.000 0.00 0.00 40.86 4.20
562 5738 4.890581 AGACAGGCTTCTGATACTATTCGT 59.109 41.667 0.00 0.00 40.86 3.85
605 5795 9.788889 TGAACTTCTATTAGATCGTGAGGTATA 57.211 33.333 0.00 0.00 0.00 1.47
617 5807 7.997223 TCCGAAGAGGTATGAACTTCTATTAGA 59.003 37.037 0.00 0.00 40.91 2.10
621 5820 6.130569 ACTCCGAAGAGGTATGAACTTCTAT 58.869 40.000 0.00 0.00 40.91 1.98
635 5834 3.444034 TGATGTCTTGGTACTCCGAAGAG 59.556 47.826 0.00 0.00 46.36 2.85
638 5837 2.894765 TGTGATGTCTTGGTACTCCGAA 59.105 45.455 0.00 0.00 36.30 4.30
800 6028 3.695830 TTTCGTTAGGATTGGTCAGCT 57.304 42.857 0.00 0.00 0.00 4.24
859 6087 3.753797 TGCGTGTTGGTTGCTAATGATTA 59.246 39.130 0.00 0.00 0.00 1.75
863 6091 2.318578 CTTGCGTGTTGGTTGCTAATG 58.681 47.619 0.00 0.00 0.00 1.90
931 6159 4.381932 CCTCAAGGTTTTTGTCTTGTGCTT 60.382 41.667 0.00 0.00 40.67 3.91
967 6684 5.933463 CAGAGTACGCCTAGTAAGTATAGCT 59.067 44.000 0.00 0.00 37.02 3.32
1021 6744 1.398692 GCCAACAAGGTGGTGAGAAA 58.601 50.000 5.96 0.00 37.20 2.52
1082 6805 1.714899 GCCGCCGTAGAATGTTGCAT 61.715 55.000 0.00 0.00 0.00 3.96
1113 6836 4.657814 AGAAACATTACCCATGGTGTCT 57.342 40.909 11.73 0.00 37.17 3.41
1289 7015 2.594962 CGCCGTTGTTGAAGAGCGT 61.595 57.895 0.00 0.00 38.81 5.07
1501 7227 0.676466 CAATGCCGGCTTGGTAGACA 60.676 55.000 29.70 3.35 41.21 3.41
1540 7266 1.159664 ACTCCTCTGGCAGGGAACT 59.840 57.895 17.99 6.07 43.67 3.01
1739 7465 2.036733 CGGTCTGTACCTTGAAGGACAA 59.963 50.000 19.83 0.00 44.35 3.18
1865 7591 9.705290 GTTTATTTGAGTACCCACAAATGAAAT 57.295 29.630 22.14 6.26 43.47 2.17
1866 7592 8.696374 TGTTTATTTGAGTACCCACAAATGAAA 58.304 29.630 22.14 17.15 43.47 2.69
1867 7593 8.239038 TGTTTATTTGAGTACCCACAAATGAA 57.761 30.769 22.14 19.15 43.47 2.57
1872 7602 4.521256 GCCTGTTTATTTGAGTACCCACAA 59.479 41.667 0.00 0.00 0.00 3.33
1889 11614 2.301346 GATGAAATCATCGGGCCTGTT 58.699 47.619 12.43 0.00 44.70 3.16
1890 11615 1.972872 GATGAAATCATCGGGCCTGT 58.027 50.000 12.43 0.00 44.70 4.00
1979 11704 5.590259 TCTTATGCCACAAGAGAATTAAGGC 59.410 40.000 0.00 0.00 40.93 4.35
1981 11706 8.442632 TGATCTTATGCCACAAGAGAATTAAG 57.557 34.615 0.00 0.00 35.57 1.85
2048 11773 8.755977 AGAATGCAATATTCTTCAGAACCATTT 58.244 29.630 0.00 0.00 34.99 2.32
2049 11774 8.302515 AGAATGCAATATTCTTCAGAACCATT 57.697 30.769 0.00 0.00 34.99 3.16
2050 11775 7.893124 AGAATGCAATATTCTTCAGAACCAT 57.107 32.000 0.00 0.00 34.99 3.55
2052 11777 9.060347 TCATAGAATGCAATATTCTTCAGAACC 57.940 33.333 6.37 0.00 39.01 3.62
2054 11779 9.281371 CCTCATAGAATGCAATATTCTTCAGAA 57.719 33.333 6.37 0.00 39.01 3.02
2057 11782 9.803507 AATCCTCATAGAATGCAATATTCTTCA 57.196 29.630 6.37 0.00 39.01 3.02
2066 11791 8.866970 TGCATATTAATCCTCATAGAATGCAA 57.133 30.769 12.15 0.72 42.83 4.08
2096 13003 7.831193 ACCTGCACTTCTAAATTGAGTGAATAT 59.169 33.333 12.84 0.00 32.77 1.28
2098 13005 6.006449 ACCTGCACTTCTAAATTGAGTGAAT 58.994 36.000 12.84 0.00 32.77 2.57
2100 13007 4.973168 ACCTGCACTTCTAAATTGAGTGA 58.027 39.130 12.84 0.00 32.77 3.41
2101 13008 6.801539 TTACCTGCACTTCTAAATTGAGTG 57.198 37.500 0.00 0.00 0.00 3.51
2103 13010 9.696917 AATTTTTACCTGCACTTCTAAATTGAG 57.303 29.630 0.00 0.00 0.00 3.02
2112 13019 9.923143 ACCTTTATAAATTTTTACCTGCACTTC 57.077 29.630 0.00 0.00 0.00 3.01
2136 13043 5.074804 AGTAAACCCCTACATGTTCAAACC 58.925 41.667 2.30 0.00 0.00 3.27
2137 13044 7.933215 ATAGTAAACCCCTACATGTTCAAAC 57.067 36.000 2.30 0.00 0.00 2.93
2141 13048 9.676861 ACTTTTATAGTAAACCCCTACATGTTC 57.323 33.333 2.30 0.00 34.56 3.18
2199 13118 6.274322 AGCCACCACATATCCCTTATTTTA 57.726 37.500 0.00 0.00 0.00 1.52
2205 13331 2.208872 AGAAGCCACCACATATCCCTT 58.791 47.619 0.00 0.00 0.00 3.95
2206 13332 1.898863 AGAAGCCACCACATATCCCT 58.101 50.000 0.00 0.00 0.00 4.20
2209 13335 4.022849 GCCAATTAGAAGCCACCACATATC 60.023 45.833 0.00 0.00 0.00 1.63
2211 13337 3.053693 AGCCAATTAGAAGCCACCACATA 60.054 43.478 0.00 0.00 0.00 2.29
2212 13338 2.102578 GCCAATTAGAAGCCACCACAT 58.897 47.619 0.00 0.00 0.00 3.21
2213 13339 1.075374 AGCCAATTAGAAGCCACCACA 59.925 47.619 0.00 0.00 0.00 4.17
2214 13340 1.839424 AGCCAATTAGAAGCCACCAC 58.161 50.000 0.00 0.00 0.00 4.16
2216 13342 3.283259 ACTAGCCAATTAGAAGCCACC 57.717 47.619 0.00 0.00 0.00 4.61
2217 13343 4.333926 CAGAACTAGCCAATTAGAAGCCAC 59.666 45.833 0.00 0.00 0.00 5.01
2218 13344 4.517285 CAGAACTAGCCAATTAGAAGCCA 58.483 43.478 0.00 0.00 0.00 4.75
2219 13345 3.879892 CCAGAACTAGCCAATTAGAAGCC 59.120 47.826 0.00 0.00 0.00 4.35
2220 13346 4.518249 ACCAGAACTAGCCAATTAGAAGC 58.482 43.478 0.00 0.00 0.00 3.86
2221 13347 5.292101 CGAACCAGAACTAGCCAATTAGAAG 59.708 44.000 0.00 0.00 0.00 2.85
2224 13350 4.755411 TCGAACCAGAACTAGCCAATTAG 58.245 43.478 0.00 0.00 0.00 1.73
2225 13351 4.382685 CCTCGAACCAGAACTAGCCAATTA 60.383 45.833 0.00 0.00 0.00 1.40
2228 13354 1.275291 CCTCGAACCAGAACTAGCCAA 59.725 52.381 0.00 0.00 0.00 4.52
2230 13356 0.460459 GCCTCGAACCAGAACTAGCC 60.460 60.000 0.00 0.00 0.00 3.93
2231 13357 0.246635 TGCCTCGAACCAGAACTAGC 59.753 55.000 0.00 0.00 0.00 3.42
2234 13360 0.832135 TCCTGCCTCGAACCAGAACT 60.832 55.000 12.22 0.00 0.00 3.01
2235 13361 0.034896 TTCCTGCCTCGAACCAGAAC 59.965 55.000 12.22 0.00 0.00 3.01
2236 13362 0.034896 GTTCCTGCCTCGAACCAGAA 59.965 55.000 12.22 4.12 34.75 3.02
2237 13363 1.118965 TGTTCCTGCCTCGAACCAGA 61.119 55.000 12.22 0.00 39.10 3.86
2239 13365 1.271856 TATGTTCCTGCCTCGAACCA 58.728 50.000 5.50 0.00 39.10 3.67
2240 13366 2.396590 TTATGTTCCTGCCTCGAACC 57.603 50.000 5.50 0.00 39.10 3.62
2241 13367 2.614057 CCATTATGTTCCTGCCTCGAAC 59.386 50.000 0.00 0.00 40.06 3.95
2244 13370 2.158900 ACTCCATTATGTTCCTGCCTCG 60.159 50.000 0.00 0.00 0.00 4.63
2247 13373 3.356290 ACAACTCCATTATGTTCCTGCC 58.644 45.455 0.00 0.00 0.00 4.85
2248 13374 4.380867 CCAACAACTCCATTATGTTCCTGC 60.381 45.833 0.00 0.00 35.22 4.85
2249 13375 5.009631 TCCAACAACTCCATTATGTTCCTG 58.990 41.667 0.00 0.00 35.22 3.86
2250 13376 5.010282 GTCCAACAACTCCATTATGTTCCT 58.990 41.667 0.00 0.00 35.22 3.36
2251 13377 5.010282 AGTCCAACAACTCCATTATGTTCC 58.990 41.667 0.00 0.00 35.22 3.62
2253 13379 6.659242 CCTAAGTCCAACAACTCCATTATGTT 59.341 38.462 0.00 0.00 37.76 2.71
2255 13381 5.066505 GCCTAAGTCCAACAACTCCATTATG 59.933 44.000 0.00 0.00 0.00 1.90
2256 13382 5.044846 AGCCTAAGTCCAACAACTCCATTAT 60.045 40.000 0.00 0.00 0.00 1.28
2258 13384 3.074538 AGCCTAAGTCCAACAACTCCATT 59.925 43.478 0.00 0.00 0.00 3.16
2259 13385 2.644798 AGCCTAAGTCCAACAACTCCAT 59.355 45.455 0.00 0.00 0.00 3.41
2262 13388 2.224548 ACCAGCCTAAGTCCAACAACTC 60.225 50.000 0.00 0.00 0.00 3.01
2263 13389 1.774856 ACCAGCCTAAGTCCAACAACT 59.225 47.619 0.00 0.00 0.00 3.16
2266 13392 1.429930 TGACCAGCCTAAGTCCAACA 58.570 50.000 0.00 0.00 31.76 3.33
2267 13393 2.789409 ATGACCAGCCTAAGTCCAAC 57.211 50.000 0.00 0.00 31.76 3.77
2271 13397 1.269831 CCGCTATGACCAGCCTAAGTC 60.270 57.143 0.00 0.00 38.37 3.01
2272 13398 0.753262 CCGCTATGACCAGCCTAAGT 59.247 55.000 0.00 0.00 38.37 2.24
2273 13399 0.034059 CCCGCTATGACCAGCCTAAG 59.966 60.000 0.00 0.00 38.37 2.18
2274 13400 1.407656 CCCCGCTATGACCAGCCTAA 61.408 60.000 0.00 0.00 38.37 2.69
2277 13403 1.192146 TATCCCCGCTATGACCAGCC 61.192 60.000 0.00 0.00 38.37 4.85
2278 13404 0.905357 ATATCCCCGCTATGACCAGC 59.095 55.000 0.00 0.00 38.23 4.85
2279 13405 1.902508 ACATATCCCCGCTATGACCAG 59.097 52.381 0.00 0.00 32.17 4.00
2280 13406 2.024176 ACATATCCCCGCTATGACCA 57.976 50.000 0.00 0.00 32.17 4.02
2281 13407 3.514309 AGTAACATATCCCCGCTATGACC 59.486 47.826 0.00 0.00 32.17 4.02
2282 13408 4.803098 AGTAACATATCCCCGCTATGAC 57.197 45.455 0.00 0.00 32.17 3.06
2283 13409 5.577100 ACTAGTAACATATCCCCGCTATGA 58.423 41.667 0.00 0.00 32.17 2.15
2284 13410 5.652891 AGACTAGTAACATATCCCCGCTATG 59.347 44.000 0.00 0.00 33.65 2.23
2287 13413 4.115398 AGACTAGTAACATATCCCCGCT 57.885 45.455 0.00 0.00 0.00 5.52
2288 13414 5.418209 ACATAGACTAGTAACATATCCCCGC 59.582 44.000 0.00 0.00 0.00 6.13
2289 13415 7.463961 AACATAGACTAGTAACATATCCCCG 57.536 40.000 0.00 0.00 0.00 5.73
2290 13416 9.531158 AGTAACATAGACTAGTAACATATCCCC 57.469 37.037 0.00 0.00 0.00 4.81
2305 13431 8.618702 TGCACTATAGAGGTAGTAACATAGAC 57.381 38.462 6.78 0.00 33.29 2.59
2340 13466 8.964533 AATGAGACCACCTATGATACTAATCT 57.035 34.615 0.00 0.00 32.93 2.40
2345 14175 8.938883 ACAATAAATGAGACCACCTATGATACT 58.061 33.333 0.00 0.00 0.00 2.12
2350 14180 7.521099 GCATGACAATAAATGAGACCACCTATG 60.521 40.741 0.00 0.00 0.00 2.23
2353 14183 4.641989 GCATGACAATAAATGAGACCACCT 59.358 41.667 0.00 0.00 0.00 4.00
2357 14187 6.381481 TCATGCATGACAATAAATGAGACC 57.619 37.500 25.42 0.00 0.00 3.85
2372 14202 6.084277 GTGATGCTATTATGTGTCATGCATG 58.916 40.000 21.07 21.07 39.36 4.06
2435 15908 9.974980 GGTAGGTAATTAAAGAAGAGAGAGATG 57.025 37.037 0.00 0.00 0.00 2.90
2436 15909 9.716556 TGGTAGGTAATTAAAGAAGAGAGAGAT 57.283 33.333 0.00 0.00 0.00 2.75
2437 15910 8.968969 GTGGTAGGTAATTAAAGAAGAGAGAGA 58.031 37.037 0.00 0.00 0.00 3.10
2443 15916 9.609346 GCTTATGTGGTAGGTAATTAAAGAAGA 57.391 33.333 0.00 0.00 0.00 2.87
2444 15917 9.391006 TGCTTATGTGGTAGGTAATTAAAGAAG 57.609 33.333 0.00 0.00 0.00 2.85
2445 15918 9.914834 ATGCTTATGTGGTAGGTAATTAAAGAA 57.085 29.630 0.00 0.00 0.00 2.52
2446 15919 9.337396 CATGCTTATGTGGTAGGTAATTAAAGA 57.663 33.333 0.00 0.00 0.00 2.52
2448 15921 9.469097 AACATGCTTATGTGGTAGGTAATTAAA 57.531 29.630 0.00 0.00 34.56 1.52
2451 15924 7.630513 GCAAACATGCTTATGTGGTAGGTAATT 60.631 37.037 0.00 0.00 34.56 1.40
2453 15926 5.124776 GCAAACATGCTTATGTGGTAGGTAA 59.875 40.000 0.00 0.00 34.56 2.85
2454 15927 4.638421 GCAAACATGCTTATGTGGTAGGTA 59.362 41.667 0.00 0.00 34.56 3.08
2455 15928 3.443681 GCAAACATGCTTATGTGGTAGGT 59.556 43.478 0.00 0.00 34.56 3.08
2456 15929 3.487376 CGCAAACATGCTTATGTGGTAGG 60.487 47.826 0.00 0.00 34.56 3.18
2458 15931 3.339141 TCGCAAACATGCTTATGTGGTA 58.661 40.909 0.00 0.00 34.56 3.25
2460 15933 2.162208 ACTCGCAAACATGCTTATGTGG 59.838 45.455 0.00 0.00 34.56 4.17
2461 15934 3.419915 GACTCGCAAACATGCTTATGTG 58.580 45.455 0.00 0.00 34.56 3.21
2464 15937 2.017049 GGGACTCGCAAACATGCTTAT 58.983 47.619 0.00 0.00 0.00 1.73
2465 15938 1.271108 TGGGACTCGCAAACATGCTTA 60.271 47.619 0.00 0.00 0.00 3.09
2466 15939 0.537143 TGGGACTCGCAAACATGCTT 60.537 50.000 0.00 0.00 0.00 3.91
2467 15940 0.537143 TTGGGACTCGCAAACATGCT 60.537 50.000 6.08 0.00 33.52 3.79
2468 15941 0.109597 CTTGGGACTCGCAAACATGC 60.110 55.000 9.59 0.00 35.96 4.06
2469 15942 1.069022 CACTTGGGACTCGCAAACATG 60.069 52.381 9.59 5.37 35.96 3.21
2470 15943 1.238439 CACTTGGGACTCGCAAACAT 58.762 50.000 9.59 0.00 35.96 2.71
2471 15944 1.444119 GCACTTGGGACTCGCAAACA 61.444 55.000 9.59 0.00 35.96 2.83
2472 15945 1.282875 GCACTTGGGACTCGCAAAC 59.717 57.895 9.59 0.07 35.96 2.93
2475 15948 1.672030 CATGCACTTGGGACTCGCA 60.672 57.895 0.00 0.00 36.95 5.10
2477 15950 2.159043 AGTATCATGCACTTGGGACTCG 60.159 50.000 0.00 0.00 0.00 4.18
2480 15953 4.408182 AGTAGTATCATGCACTTGGGAC 57.592 45.455 5.29 0.00 0.00 4.46
2482 15955 6.291377 ACATAAGTAGTATCATGCACTTGGG 58.709 40.000 5.29 2.16 33.47 4.12
2483 15956 7.792374 AACATAAGTAGTATCATGCACTTGG 57.208 36.000 5.29 2.42 33.47 3.61
2485 15958 7.931948 GGGTAACATAAGTAGTATCATGCACTT 59.068 37.037 5.29 4.15 39.74 3.16
2486 15959 7.442656 GGGTAACATAAGTAGTATCATGCACT 58.557 38.462 0.00 5.31 39.74 4.40
2487 15960 6.649557 GGGGTAACATAAGTAGTATCATGCAC 59.350 42.308 0.00 0.00 39.74 4.57
2488 15961 6.239772 GGGGGTAACATAAGTAGTATCATGCA 60.240 42.308 0.00 0.00 39.74 3.96
2490 15963 7.016268 AGTGGGGGTAACATAAGTAGTATCATG 59.984 40.741 0.00 0.00 39.74 3.07
2491 15964 7.080353 AGTGGGGGTAACATAAGTAGTATCAT 58.920 38.462 0.00 0.00 39.74 2.45
2494 15967 7.456902 CCATAGTGGGGGTAACATAAGTAGTAT 59.543 40.741 0.00 0.00 39.74 2.12
2495 15968 6.783977 CCATAGTGGGGGTAACATAAGTAGTA 59.216 42.308 0.00 0.00 39.74 1.82
2497 15970 5.512576 GCCATAGTGGGGGTAACATAAGTAG 60.513 48.000 0.00 0.00 38.19 2.57
2498 15971 4.348754 GCCATAGTGGGGGTAACATAAGTA 59.651 45.833 0.00 0.00 38.19 2.24
2499 15972 3.137728 GCCATAGTGGGGGTAACATAAGT 59.862 47.826 0.00 0.00 38.19 2.24
2500 15973 3.497942 GGCCATAGTGGGGGTAACATAAG 60.498 52.174 0.00 0.00 38.19 1.73
2502 15975 2.059490 GGCCATAGTGGGGGTAACATA 58.941 52.381 0.00 0.00 38.19 2.29
2503 15976 0.850784 GGCCATAGTGGGGGTAACAT 59.149 55.000 0.00 0.00 38.19 2.71
2505 15978 0.182775 CTGGCCATAGTGGGGGTAAC 59.817 60.000 5.51 0.00 38.19 2.50
2506 15979 1.641552 GCTGGCCATAGTGGGGGTAA 61.642 60.000 5.51 0.00 38.19 2.85
2507 15980 2.076184 GCTGGCCATAGTGGGGGTA 61.076 63.158 5.51 0.00 38.19 3.69
2509 15982 4.209866 GGCTGGCCATAGTGGGGG 62.210 72.222 5.51 0.00 38.19 5.40
2510 15983 1.352622 TAAGGCTGGCCATAGTGGGG 61.353 60.000 5.51 0.00 38.19 4.96
2511 15984 0.550914 TTAAGGCTGGCCATAGTGGG 59.449 55.000 5.51 0.00 38.19 4.61
2512 15985 2.301346 CTTTAAGGCTGGCCATAGTGG 58.699 52.381 5.51 0.00 41.55 4.00
2513 15986 2.301346 CCTTTAAGGCTGGCCATAGTG 58.699 52.381 5.51 0.00 38.92 2.74
2514 15987 1.215423 CCCTTTAAGGCTGGCCATAGT 59.785 52.381 5.51 0.00 38.92 2.12
2515 15988 1.494721 TCCCTTTAAGGCTGGCCATAG 59.505 52.381 5.51 0.00 38.92 2.23
2518 15991 0.033208 CATCCCTTTAAGGCTGGCCA 60.033 55.000 14.39 4.71 38.92 5.36
2519 15992 0.756815 CCATCCCTTTAAGGCTGGCC 60.757 60.000 14.90 3.00 32.33 5.36
2520 15993 2.812664 CCATCCCTTTAAGGCTGGC 58.187 57.895 14.90 0.00 32.33 4.85
2525 15998 2.091665 AGGACATGCCATCCCTTTAAGG 60.092 50.000 3.57 3.57 40.02 2.69
2526 15999 2.954318 CAGGACATGCCATCCCTTTAAG 59.046 50.000 8.58 0.00 40.02 1.85
2527 16000 2.580322 TCAGGACATGCCATCCCTTTAA 59.420 45.455 8.58 0.00 40.02 1.52
2528 16001 2.204463 TCAGGACATGCCATCCCTTTA 58.796 47.619 8.58 0.00 40.02 1.85
2529 16002 1.002069 TCAGGACATGCCATCCCTTT 58.998 50.000 8.58 0.00 40.02 3.11
2530 16003 1.229131 ATCAGGACATGCCATCCCTT 58.771 50.000 8.58 0.00 40.02 3.95
2531 16004 1.133575 CAATCAGGACATGCCATCCCT 60.134 52.381 8.58 0.00 40.02 4.20
2532 16005 1.325355 CAATCAGGACATGCCATCCC 58.675 55.000 8.58 0.00 40.02 3.85
2533 16006 1.133699 TCCAATCAGGACATGCCATCC 60.134 52.381 8.58 1.20 43.07 3.51
2541 16014 8.549952 GTAAAGCATTACCATCCAATCAGGACA 61.550 40.741 0.24 0.00 41.44 4.02
2542 16015 6.238759 GTAAAGCATTACCATCCAATCAGGAC 60.239 42.308 0.24 0.00 41.44 3.85
2543 16016 5.827797 GTAAAGCATTACCATCCAATCAGGA 59.172 40.000 0.24 0.00 42.15 3.86
2544 16017 5.277974 CGTAAAGCATTACCATCCAATCAGG 60.278 44.000 6.27 0.00 38.55 3.86
2545 16018 5.527214 TCGTAAAGCATTACCATCCAATCAG 59.473 40.000 6.27 0.00 38.55 2.90
2546 16019 5.432645 TCGTAAAGCATTACCATCCAATCA 58.567 37.500 6.27 0.00 38.55 2.57
2547 16020 6.204688 TGATCGTAAAGCATTACCATCCAATC 59.795 38.462 14.21 6.21 38.26 2.67
2548 16021 6.061441 TGATCGTAAAGCATTACCATCCAAT 58.939 36.000 14.21 0.00 38.26 3.16
2550 16023 5.029807 TGATCGTAAAGCATTACCATCCA 57.970 39.130 14.21 3.48 38.26 3.41
2552 16158 9.546909 CATTTATGATCGTAAAGCATTACCATC 57.453 33.333 21.43 11.13 39.01 3.51
2556 16162 8.273557 ACGTCATTTATGATCGTAAAGCATTAC 58.726 33.333 21.43 14.17 40.22 1.89
2558 16164 7.011016 TCACGTCATTTATGATCGTAAAGCATT 59.989 33.333 21.43 5.99 40.11 3.56
2559 16165 6.478673 TCACGTCATTTATGATCGTAAAGCAT 59.521 34.615 21.43 6.30 40.11 3.79
2565 16171 4.912214 ACGTCACGTCATTTATGATCGTA 58.088 39.130 0.00 0.00 40.11 3.43
2569 16175 4.688879 ACACAACGTCACGTCATTTATGAT 59.311 37.500 1.67 0.00 39.99 2.45
2573 16179 3.445857 TCACACAACGTCACGTCATTTA 58.554 40.909 1.67 0.00 39.99 1.40
2575 16181 1.929230 TCACACAACGTCACGTCATT 58.071 45.000 1.67 0.00 39.99 2.57
2577 16183 1.590698 CAATCACACAACGTCACGTCA 59.409 47.619 1.67 0.00 39.99 4.35
2578 16184 1.070843 CCAATCACACAACGTCACGTC 60.071 52.381 1.67 0.00 39.99 4.34
2579 16185 0.934496 CCAATCACACAACGTCACGT 59.066 50.000 0.00 0.00 43.97 4.49
2583 16189 3.896648 ATCAACCAATCACACAACGTC 57.103 42.857 0.00 0.00 0.00 4.34
2605 16211 8.462016 CAAAGGATTAGAAACCACTAGAAATGG 58.538 37.037 0.00 0.00 43.43 3.16
2606 16212 9.014297 ACAAAGGATTAGAAACCACTAGAAATG 57.986 33.333 0.00 0.00 0.00 2.32
2607 16213 9.588096 AACAAAGGATTAGAAACCACTAGAAAT 57.412 29.630 0.00 0.00 0.00 2.17
2608 16214 8.846211 CAACAAAGGATTAGAAACCACTAGAAA 58.154 33.333 0.00 0.00 0.00 2.52
2609 16215 7.996644 ACAACAAAGGATTAGAAACCACTAGAA 59.003 33.333 0.00 0.00 0.00 2.10
2610 16216 7.514721 ACAACAAAGGATTAGAAACCACTAGA 58.485 34.615 0.00 0.00 0.00 2.43
2613 16219 6.183360 CCAACAACAAAGGATTAGAAACCACT 60.183 38.462 0.00 0.00 0.00 4.00
2615 16221 5.659079 ACCAACAACAAAGGATTAGAAACCA 59.341 36.000 0.00 0.00 0.00 3.67
2616 16222 6.156748 ACCAACAACAAAGGATTAGAAACC 57.843 37.500 0.00 0.00 0.00 3.27
2621 16290 7.962918 CGATCTAAACCAACAACAAAGGATTAG 59.037 37.037 0.00 0.00 38.44 1.73
2624 16293 5.768164 ACGATCTAAACCAACAACAAAGGAT 59.232 36.000 0.00 0.00 0.00 3.24
2626 16295 5.432885 ACGATCTAAACCAACAACAAAGG 57.567 39.130 0.00 0.00 0.00 3.11
2631 16300 7.953710 GTGTATTGTACGATCTAAACCAACAAC 59.046 37.037 0.00 0.00 0.00 3.32
2634 16303 6.237648 CCGTGTATTGTACGATCTAAACCAAC 60.238 42.308 0.00 0.00 43.82 3.77
2636 16305 5.342433 CCGTGTATTGTACGATCTAAACCA 58.658 41.667 0.00 0.00 43.82 3.67
2638 16307 4.207841 GCCCGTGTATTGTACGATCTAAAC 59.792 45.833 0.00 0.00 43.82 2.01
2640 16309 3.633525 AGCCCGTGTATTGTACGATCTAA 59.366 43.478 0.00 0.00 43.82 2.10
2641 16310 3.216800 AGCCCGTGTATTGTACGATCTA 58.783 45.455 0.00 0.00 43.82 1.98
2647 16316 1.758862 ACCCTAGCCCGTGTATTGTAC 59.241 52.381 0.00 0.00 0.00 2.90
2651 16320 1.134610 CGAAACCCTAGCCCGTGTATT 60.135 52.381 0.00 0.00 0.00 1.89
2652 16321 0.462789 CGAAACCCTAGCCCGTGTAT 59.537 55.000 0.00 0.00 0.00 2.29
2653 16322 1.606885 CCGAAACCCTAGCCCGTGTA 61.607 60.000 0.00 0.00 0.00 2.90
2654 16323 2.660802 CGAAACCCTAGCCCGTGT 59.339 61.111 0.00 0.00 0.00 4.49
2655 16324 2.125269 CCGAAACCCTAGCCCGTG 60.125 66.667 0.00 0.00 0.00 4.94
2656 16325 2.605601 ACCGAAACCCTAGCCCGT 60.606 61.111 0.00 0.00 0.00 5.28
2658 16327 2.437895 GCACCGAAACCCTAGCCC 60.438 66.667 0.00 0.00 0.00 5.19
2660 16329 1.019805 GTGAGCACCGAAACCCTAGC 61.020 60.000 0.00 0.00 0.00 3.42
2662 16331 1.675219 GGTGAGCACCGAAACCCTA 59.325 57.895 3.57 0.00 42.29 3.53
2663 16332 2.430367 GGTGAGCACCGAAACCCT 59.570 61.111 3.57 0.00 42.29 4.34
2672 16341 2.280552 TGACTACCCCGGTGAGCAC 61.281 63.158 0.00 0.00 0.00 4.40
2674 16343 2.577593 GTGACTACCCCGGTGAGC 59.422 66.667 0.00 0.00 0.00 4.26
2675 16344 1.189524 TTGGTGACTACCCCGGTGAG 61.190 60.000 0.00 0.00 46.96 3.51
2676 16345 0.763604 TTTGGTGACTACCCCGGTGA 60.764 55.000 0.00 0.00 46.96 4.02
2677 16346 0.321298 CTTTGGTGACTACCCCGGTG 60.321 60.000 0.00 0.00 46.96 4.94
2679 16348 0.909623 ATCTTTGGTGACTACCCCGG 59.090 55.000 0.00 0.00 46.96 5.73
2680 16349 2.781681 AATCTTTGGTGACTACCCCG 57.218 50.000 0.00 0.00 46.96 5.73
2681 16350 3.007635 CGAAATCTTTGGTGACTACCCC 58.992 50.000 0.00 0.00 46.96 4.95
2682 16351 3.933332 CTCGAAATCTTTGGTGACTACCC 59.067 47.826 0.00 0.00 46.96 3.69
2685 16354 4.282449 TGTCCTCGAAATCTTTGGTGACTA 59.718 41.667 0.00 0.00 0.00 2.59
2686 16355 3.071023 TGTCCTCGAAATCTTTGGTGACT 59.929 43.478 0.00 0.00 0.00 3.41
2687 16356 3.399330 TGTCCTCGAAATCTTTGGTGAC 58.601 45.455 0.00 0.00 0.00 3.67
2688 16357 3.762407 TGTCCTCGAAATCTTTGGTGA 57.238 42.857 0.00 0.00 0.00 4.02
2689 16358 3.363970 CGTTGTCCTCGAAATCTTTGGTG 60.364 47.826 0.00 0.00 0.00 4.17
2690 16359 2.806244 CGTTGTCCTCGAAATCTTTGGT 59.194 45.455 0.00 0.00 0.00 3.67
2692 16361 3.421826 CGTCGTTGTCCTCGAAATCTTTG 60.422 47.826 0.00 0.00 39.01 2.77
2693 16362 2.729882 CGTCGTTGTCCTCGAAATCTTT 59.270 45.455 0.00 0.00 39.01 2.52
2696 16365 0.365859 GCGTCGTTGTCCTCGAAATC 59.634 55.000 0.00 0.00 39.01 2.17
2699 16368 1.659335 GTGCGTCGTTGTCCTCGAA 60.659 57.895 0.00 0.00 39.01 3.71
2700 16369 2.050714 GTGCGTCGTTGTCCTCGA 60.051 61.111 0.00 0.00 34.91 4.04
2701 16370 3.458579 CGTGCGTCGTTGTCCTCG 61.459 66.667 0.00 0.00 34.52 4.63
2702 16371 2.814183 ATCCGTGCGTCGTTGTCCTC 62.814 60.000 0.00 0.00 37.94 3.71
2703 16372 2.814183 GATCCGTGCGTCGTTGTCCT 62.814 60.000 0.00 0.00 37.94 3.85
2704 16373 2.431942 ATCCGTGCGTCGTTGTCC 60.432 61.111 0.00 0.00 37.94 4.02
2705 16374 2.774951 CGATCCGTGCGTCGTTGTC 61.775 63.158 0.00 0.00 37.94 3.18
2706 16375 2.803670 CGATCCGTGCGTCGTTGT 60.804 61.111 0.00 0.00 37.94 3.32
2708 16377 4.789075 CCCGATCCGTGCGTCGTT 62.789 66.667 0.00 0.00 36.17 3.85
2710 16379 3.768185 AATCCCGATCCGTGCGTCG 62.768 63.158 0.00 0.00 37.58 5.12
2711 16380 2.106332 AATCCCGATCCGTGCGTC 59.894 61.111 0.00 0.00 0.00 5.19
2712 16381 2.202878 CAATCCCGATCCGTGCGT 60.203 61.111 0.00 0.00 0.00 5.24
2713 16382 2.715532 ATCCAATCCCGATCCGTGCG 62.716 60.000 0.00 0.00 0.00 5.34
2714 16383 1.071471 ATCCAATCCCGATCCGTGC 59.929 57.895 0.00 0.00 0.00 5.34
2715 16384 0.603707 CCATCCAATCCCGATCCGTG 60.604 60.000 0.00 0.00 0.00 4.94
2717 16386 0.615331 ATCCATCCAATCCCGATCCG 59.385 55.000 0.00 0.00 0.00 4.18
2719 16388 3.077359 GTTGATCCATCCAATCCCGATC 58.923 50.000 0.00 0.00 0.00 3.69
2720 16389 2.550855 CGTTGATCCATCCAATCCCGAT 60.551 50.000 0.00 0.00 0.00 4.18
2721 16390 1.202639 CGTTGATCCATCCAATCCCGA 60.203 52.381 0.00 0.00 0.00 5.14
2723 16392 2.348411 ACGTTGATCCATCCAATCCC 57.652 50.000 0.00 0.00 0.00 3.85
2724 16393 2.223572 GCAACGTTGATCCATCCAATCC 60.224 50.000 31.62 5.24 0.00 3.01
2725 16394 2.539547 CGCAACGTTGATCCATCCAATC 60.540 50.000 31.62 8.15 0.00 2.67
2726 16395 1.401552 CGCAACGTTGATCCATCCAAT 59.598 47.619 31.62 0.00 0.00 3.16
2727 16396 0.801872 CGCAACGTTGATCCATCCAA 59.198 50.000 31.62 0.00 0.00 3.53
2728 16397 0.036858 TCGCAACGTTGATCCATCCA 60.037 50.000 31.62 0.00 0.00 3.41
2729 16398 1.003545 CATCGCAACGTTGATCCATCC 60.004 52.381 31.62 10.85 0.00 3.51
2732 16401 0.321210 ACCATCGCAACGTTGATCCA 60.321 50.000 31.62 11.50 0.00 3.41
2734 16403 0.025001 CGACCATCGCAACGTTGATC 59.975 55.000 31.62 13.79 31.14 2.92
2735 16404 0.389296 TCGACCATCGCAACGTTGAT 60.389 50.000 31.62 14.32 40.21 2.57
2736 16405 1.007154 TCGACCATCGCAACGTTGA 60.007 52.632 31.62 12.46 40.21 3.18
2738 16407 1.282248 CTGTCGACCATCGCAACGTT 61.282 55.000 14.12 0.00 40.21 3.99
2739 16408 1.733041 CTGTCGACCATCGCAACGT 60.733 57.895 14.12 0.00 40.21 3.99
2741 16410 1.781555 CACTGTCGACCATCGCAAC 59.218 57.895 14.12 0.00 40.21 4.17
2742 16411 2.027073 GCACTGTCGACCATCGCAA 61.027 57.895 14.12 0.00 40.21 4.85
2744 16413 2.125912 AGCACTGTCGACCATCGC 60.126 61.111 14.12 10.47 40.21 4.58
2745 16414 0.109086 AAGAGCACTGTCGACCATCG 60.109 55.000 14.12 1.38 42.10 3.84
2746 16415 1.067565 TGAAGAGCACTGTCGACCATC 60.068 52.381 14.12 3.92 0.00 3.51
2747 16416 0.969149 TGAAGAGCACTGTCGACCAT 59.031 50.000 14.12 0.00 0.00 3.55
2750 16419 1.337260 ACCATGAAGAGCACTGTCGAC 60.337 52.381 9.11 9.11 0.00 4.20
2752 16421 1.073964 CACCATGAAGAGCACTGTCG 58.926 55.000 0.00 0.00 0.00 4.35
2754 16423 0.952497 CGCACCATGAAGAGCACTGT 60.952 55.000 0.00 0.00 0.00 3.55
2755 16424 1.642037 CCGCACCATGAAGAGCACTG 61.642 60.000 0.00 0.00 0.00 3.66
2757 16426 3.044059 GCCGCACCATGAAGAGCAC 62.044 63.158 0.00 0.00 0.00 4.40
2758 16427 2.747460 GCCGCACCATGAAGAGCA 60.747 61.111 0.00 0.00 0.00 4.26
2759 16428 1.865788 TTTGCCGCACCATGAAGAGC 61.866 55.000 0.00 0.00 0.00 4.09
2760 16429 0.169672 CTTTGCCGCACCATGAAGAG 59.830 55.000 0.00 0.00 0.00 2.85
2761 16430 0.250684 TCTTTGCCGCACCATGAAGA 60.251 50.000 0.00 0.00 0.00 2.87
2762 16431 0.813184 ATCTTTGCCGCACCATGAAG 59.187 50.000 0.00 0.00 0.00 3.02
2763 16432 0.527113 CATCTTTGCCGCACCATGAA 59.473 50.000 0.00 0.00 0.00 2.57
2764 16433 0.322366 TCATCTTTGCCGCACCATGA 60.322 50.000 0.00 0.00 0.00 3.07
2765 16434 0.527113 TTCATCTTTGCCGCACCATG 59.473 50.000 0.00 0.00 0.00 3.66
2766 16435 0.813184 CTTCATCTTTGCCGCACCAT 59.187 50.000 0.00 0.00 0.00 3.55
2767 16436 1.243342 CCTTCATCTTTGCCGCACCA 61.243 55.000 0.00 0.00 0.00 4.17
2768 16437 1.244019 ACCTTCATCTTTGCCGCACC 61.244 55.000 0.00 0.00 0.00 5.01
2770 16439 1.243342 CCACCTTCATCTTTGCCGCA 61.243 55.000 0.00 0.00 0.00 5.69
2772 16441 1.243342 TGCCACCTTCATCTTTGCCG 61.243 55.000 0.00 0.00 0.00 5.69
2773 16442 1.188863 ATGCCACCTTCATCTTTGCC 58.811 50.000 0.00 0.00 0.00 4.52
2774 16443 2.613691 CAATGCCACCTTCATCTTTGC 58.386 47.619 0.00 0.00 0.00 3.68
2779 16962 1.315257 ACGCCAATGCCACCTTCATC 61.315 55.000 0.00 0.00 0.00 2.92
2783 16966 3.683937 GCACGCCAATGCCACCTT 61.684 61.111 0.00 0.00 39.86 3.50
2790 16973 3.762247 CCCCCAAGCACGCCAATG 61.762 66.667 0.00 0.00 0.00 2.82
2791 16974 3.826265 AACCCCCAAGCACGCCAAT 62.826 57.895 0.00 0.00 0.00 3.16
2792 16975 4.531426 AACCCCCAAGCACGCCAA 62.531 61.111 0.00 0.00 0.00 4.52
2794 16977 4.966787 TCAACCCCCAAGCACGCC 62.967 66.667 0.00 0.00 0.00 5.68
2798 16981 1.488705 ATCTCGTCAACCCCCAAGCA 61.489 55.000 0.00 0.00 0.00 3.91
2800 16983 0.613260 TGATCTCGTCAACCCCCAAG 59.387 55.000 0.00 0.00 32.78 3.61
2801 16984 0.613260 CTGATCTCGTCAACCCCCAA 59.387 55.000 0.00 0.00 36.14 4.12
2802 16985 1.264749 CCTGATCTCGTCAACCCCCA 61.265 60.000 0.00 0.00 36.14 4.96
2806 16989 1.519455 CCGCCTGATCTCGTCAACC 60.519 63.158 0.00 0.00 36.14 3.77
2807 16990 0.108804 TTCCGCCTGATCTCGTCAAC 60.109 55.000 0.00 0.00 36.14 3.18
2808 16991 0.606096 TTTCCGCCTGATCTCGTCAA 59.394 50.000 0.00 0.00 36.14 3.18
2810 16993 0.173708 AGTTTCCGCCTGATCTCGTC 59.826 55.000 0.00 0.00 0.00 4.20
2811 16994 0.608640 AAGTTTCCGCCTGATCTCGT 59.391 50.000 0.00 0.00 0.00 4.18
2812 16995 1.726853 AAAGTTTCCGCCTGATCTCG 58.273 50.000 0.00 0.00 0.00 4.04
2813 16996 3.596214 TGTAAAGTTTCCGCCTGATCTC 58.404 45.455 0.00 0.00 0.00 2.75
2814 16997 3.695830 TGTAAAGTTTCCGCCTGATCT 57.304 42.857 0.00 0.00 0.00 2.75
2815 16998 3.500680 TGTTGTAAAGTTTCCGCCTGATC 59.499 43.478 0.00 0.00 0.00 2.92
2818 17001 2.616842 AGTGTTGTAAAGTTTCCGCCTG 59.383 45.455 0.00 0.00 0.00 4.85
2819 17002 2.927028 AGTGTTGTAAAGTTTCCGCCT 58.073 42.857 0.00 0.00 0.00 5.52
2820 17003 3.560896 TGTAGTGTTGTAAAGTTTCCGCC 59.439 43.478 0.00 0.00 0.00 6.13
2822 17005 6.950545 TCATTGTAGTGTTGTAAAGTTTCCG 58.049 36.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.