AutoCloner

Multiple sequence alignment - TraesCS3B01G346700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G346700	chr3B	100.000	3743	0	0	1	3743	556352253	556348511	0.000000e+00	6913
1	TraesCS3B01G346700	chr3B	93.143	525	32	4	3220	3743	548644597	548645118	0.000000e+00	767
2	TraesCS3B01G346700	chr3B	93.143	525	28	2	3219	3743	556290444	556289928	0.000000e+00	763
3	TraesCS3B01G346700	chr3B	92.509	534	37	3	3210	3743	606602566	606603096	0.000000e+00	761
4	TraesCS3B01G346700	chr3D	94.007	3254	140	27	1	3218	426046367	426049601	0.000000e+00	4878
5	TraesCS3B01G346700	chr3A	91.528	2526	164	20	732	3218	562100834	562103348	0.000000e+00	3434
6	TraesCS3B01G346700	chr3A	88.165	583	32	12	1	551	562099969	562100546	0.000000e+00	660
7	TraesCS3B01G346700	chr7B	93.346	526	31	4	3220	3743	538848631	538849154	0.000000e+00	774
8	TraesCS3B01G346700	chr7B	93.156	526	34	2	3219	3743	673620559	673620035	0.000000e+00	771
9	TraesCS3B01G346700	chr7B	81.776	653	113	6	2082	2732	560503342	560503990	3.290000e-150	542
10	TraesCS3B01G346700	chr2B	93.333	525	34	1	3219	3743	238242997	238243520	0.000000e+00	774
11	TraesCS3B01G346700	chr2B	93.143	525	33	3	3220	3743	240579768	240580290	0.000000e+00	767
12	TraesCS3B01G346700	chr2B	92.952	525	33	3	3219	3743	369237226	369237746	0.000000e+00	761
13	TraesCS3B01G346700	chr4B	92.966	526	35	2	3219	3743	388691565	388691041	0.000000e+00	765
14	TraesCS3B01G346700	chr6A	81.967	854	130	10	1028	1865	74149302	74150147	0.000000e+00	702
15	TraesCS3B01G346700	chr7D	81.537	872	137	8	1028	1883	524312458	524313321	0.000000e+00	697
16	TraesCS3B01G346700	chr7D	81.422	872	138	8	1028	1883	524304804	524305667	0.000000e+00	691
17	TraesCS3B01G346700	chr7D	81.748	652	115	4	2082	2732	524251264	524251912	3.290000e-150	542
18	TraesCS3B01G346700	chr7D	81.595	652	116	4	2082	2732	524305993	524306641	1.530000e-148	536
19	TraesCS3B01G346700	chr6B	81.329	873	137	8	1028	1883	95512451	95513314	0.000000e+00	686
20	TraesCS3B01G346700	chr6B	79.747	869	144	6	1031	1883	76421938	76421086	5.350000e-168	601
21	TraesCS3B01G346700	chr6B	81.623	653	114	6	2082	2732	76420699	76420051	1.530000e-148	536
22	TraesCS3B01G346700	chrUn	80.898	869	142	6	1031	1883	77010913	77010053	0.000000e+00	664
23	TraesCS3B01G346700	chrUn	80.783	869	143	6	1031	1883	76991279	76990419	0.000000e+00	658
24	TraesCS3B01G346700	chrUn	81.804	654	111	8	2082	2732	76990032	76989384	3.290000e-150	542
25	TraesCS3B01G346700	chrUn	81.470	653	115	6	2082	2732	394209891	394209243	7.120000e-147	531
26	TraesCS3B01G346700	chr5D	79.508	854	148	14	1028	1865	549262023	549261181	1.940000e-162	582
27	TraesCS3B01G346700	chr7A	79.527	845	146	14	1052	1879	604222686	604223520	9.010000e-161	577
28	TraesCS3B01G346700	chr7A	81.498	654	113	7	2082	2732	604252133	604252781	7.120000e-147	531
29	TraesCS3B01G346700	chr1A	79.250	747	142	9	1013	1756	10424890	10424154	3.340000e-140	508

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G346700	chr3B	556348511	556352253	3742	True	6913.0	6913	100.0000	1	3743	1	chr3B.!!$R2	3742
1	TraesCS3B01G346700	chr3B	548644597	548645118	521	False	767.0	767	93.1430	3220	3743	1	chr3B.!!$F1	523
2	TraesCS3B01G346700	chr3B	556289928	556290444	516	True	763.0	763	93.1430	3219	3743	1	chr3B.!!$R1	524
3	TraesCS3B01G346700	chr3B	606602566	606603096	530	False	761.0	761	92.5090	3210	3743	1	chr3B.!!$F2	533
4	TraesCS3B01G346700	chr3D	426046367	426049601	3234	False	4878.0	4878	94.0070	1	3218	1	chr3D.!!$F1	3217
5	TraesCS3B01G346700	chr3A	562099969	562103348	3379	False	2047.0	3434	89.8465	1	3218	2	chr3A.!!$F1	3217
6	TraesCS3B01G346700	chr7B	538848631	538849154	523	False	774.0	774	93.3460	3220	3743	1	chr7B.!!$F1	523
7	TraesCS3B01G346700	chr7B	673620035	673620559	524	True	771.0	771	93.1560	3219	3743	1	chr7B.!!$R1	524
8	TraesCS3B01G346700	chr7B	560503342	560503990	648	False	542.0	542	81.7760	2082	2732	1	chr7B.!!$F2	650
9	TraesCS3B01G346700	chr2B	238242997	238243520	523	False	774.0	774	93.3330	3219	3743	1	chr2B.!!$F1	524
10	TraesCS3B01G346700	chr2B	240579768	240580290	522	False	767.0	767	93.1430	3220	3743	1	chr2B.!!$F2	523
11	TraesCS3B01G346700	chr2B	369237226	369237746	520	False	761.0	761	92.9520	3219	3743	1	chr2B.!!$F3	524
12	TraesCS3B01G346700	chr4B	388691041	388691565	524	True	765.0	765	92.9660	3219	3743	1	chr4B.!!$R1	524
13	TraesCS3B01G346700	chr6A	74149302	74150147	845	False	702.0	702	81.9670	1028	1865	1	chr6A.!!$F1	837
14	TraesCS3B01G346700	chr7D	524312458	524313321	863	False	697.0	697	81.5370	1028	1883	1	chr7D.!!$F2	855
15	TraesCS3B01G346700	chr7D	524304804	524306641	1837	False	613.5	691	81.5085	1028	2732	2	chr7D.!!$F3	1704
16	TraesCS3B01G346700	chr7D	524251264	524251912	648	False	542.0	542	81.7480	2082	2732	1	chr7D.!!$F1	650
17	TraesCS3B01G346700	chr6B	95512451	95513314	863	False	686.0	686	81.3290	1028	1883	1	chr6B.!!$F1	855
18	TraesCS3B01G346700	chr6B	76420051	76421938	1887	True	568.5	601	80.6850	1031	2732	2	chr6B.!!$R1	1701
19	TraesCS3B01G346700	chrUn	77010053	77010913	860	True	664.0	664	80.8980	1031	1883	1	chrUn.!!$R1	852
20	TraesCS3B01G346700	chrUn	76989384	76991279	1895	True	600.0	658	81.2935	1031	2732	2	chrUn.!!$R3	1701
21	TraesCS3B01G346700	chrUn	394209243	394209891	648	True	531.0	531	81.4700	2082	2732	1	chrUn.!!$R2	650
22	TraesCS3B01G346700	chr5D	549261181	549262023	842	True	582.0	582	79.5080	1028	1865	1	chr5D.!!$R1	837
23	TraesCS3B01G346700	chr7A	604222686	604223520	834	False	577.0	577	79.5270	1052	1879	1	chr7A.!!$F1	827
24	TraesCS3B01G346700	chr7A	604252133	604252781	648	False	531.0	531	81.4980	2082	2732	1	chr7A.!!$F2	650
25	TraesCS3B01G346700	chr1A	10424154	10424890	736	True	508.0	508	79.2500	1013	1756	1	chr1A.!!$R1	743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
923	1116	1.604593	GCTCCACAATGCTGGGTGT	60.605	57.895	2.87	0.00	33.19	4.16	F
2190	2662	0.033504	TGAACAGTCCGGAGTTGCTC	59.966	55.000	9.74	10.42	0.00	4.26	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2376	2848	0.183492	GGATGACATGGCTGCCCTTA	59.817	55.0	17.53	0.0	0.00	2.69	R
3653	4135	0.682852	TGATTCCGTCAAGGTTCCGT	59.317	50.0	0.00	0.0	41.99	4.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
90	94	3.879295	GTCTATTTTGCTAGCATGCTGGA	59.121	43.478	32.64	19.24	0.00	3.86
466	496	7.171678	CCTCTATGTAAGAATTTAAGGGCTTCG	59.828	40.741	0.00	0.00	32.46	3.79
619	652	7.551617	ACCTCTATAAAGTTTGTAAACCGGATG	59.448	37.037	9.46	0.00	39.71	3.51
923	1116	1.604593	GCTCCACAATGCTGGGTGT	60.605	57.895	2.87	0.00	33.19	4.16
1091	1290	0.249784	CCCGAGATGATGCTCCACAG	60.250	60.000	0.00	0.00	0.00	3.66
1293	1492	2.699768	CGGGTACAAGGACGCCGTA	61.700	63.158	0.00	0.00	32.06	4.02
1459	1688	4.069232	TCAACCTCGGGCGCTGAG	62.069	66.667	19.12	19.12	36.69	3.35
1541	1770	2.633509	AAGCGGTACTTCGGCGAGT	61.634	57.895	10.46	13.00	45.16	4.18
1704	1936	1.376683	TTAAGCAGGCCAACGCGAT	60.377	52.632	15.93	0.00	35.02	4.58
1716	1948	2.120232	CAACGCGATCATGAGTAGACC	58.880	52.381	15.93	0.00	0.00	3.85
1750	1982	4.373116	GACGAGCGGTGGAGGCAA	62.373	66.667	2.87	0.00	0.00	4.52
1759	1991	3.646715	TGGAGGCAACGGAAGGGG	61.647	66.667	0.00	0.00	46.39	4.79
1899	2133	3.139397	AGGAAACCTTCAACATGGTACCA	59.861	43.478	18.99	18.99	36.28	3.25
1900	2134	3.254903	GGAAACCTTCAACATGGTACCAC	59.745	47.826	19.09	0.00	35.17	4.16
1959	2415	2.655364	CGTATGCTCGGCTCGTGG	60.655	66.667	0.00	0.00	0.00	4.94
1997	2453	5.381174	TTTTGCAATCTTCCAGATGACTG	57.619	39.130	0.00	0.00	43.12	3.51
2020	2478	7.393515	ACTGGAAAACAACTACAACTTTTCTCT	59.606	33.333	0.00	0.00	34.44	3.10
2021	2479	7.758495	TGGAAAACAACTACAACTTTTCTCTC	58.242	34.615	0.00	0.00	34.44	3.20
2146	2618	4.178169	ACAACCCGTCCAACGCCA	62.178	61.111	0.00	0.00	40.91	5.69
2178	2650	1.296715	GGCGGAGATGGTGAACAGT	59.703	57.895	0.00	0.00	0.00	3.55
2190	2662	0.033504	TGAACAGTCCGGAGTTGCTC	59.966	55.000	9.74	10.42	0.00	4.26
2200	2672	1.016653	GGAGTTGCTCGACAAGGCTC	61.017	60.000	0.00	5.64	39.50	4.70
2202	2674	0.037790	AGTTGCTCGACAAGGCTCTC	60.038	55.000	0.00	0.00	39.50	3.20
2247	2719	2.669569	GAGCGGCTGGTGCAAGAA	60.670	61.111	7.50	0.00	41.91	2.52
2277	2749	2.879646	CCCACAACTTAACTACGCCAAA	59.120	45.455	0.00	0.00	0.00	3.28
2310	2782	2.414594	GCATTTCGGCTGCATCCC	59.585	61.111	0.00	0.00	39.46	3.85
2314	2786	3.969250	TTTCGGCTGCATCCCGTCC	62.969	63.158	20.96	1.18	45.71	4.79
2397	2869	0.695462	AGGGCAGCCATGTCATCCTA	60.695	55.000	15.19	0.00	30.39	2.94
2598	3070	2.363172	GCTCTTCGGGAGGCTCCTT	61.363	63.158	31.39	0.00	42.08	3.36
2601	3073	0.544357	TCTTCGGGAGGCTCCTTCAA	60.544	55.000	31.39	19.66	36.57	2.69
2728	3200	3.785887	TCTTCCAATGCACCTATACCCTT	59.214	43.478	0.00	0.00	0.00	3.95
2778	3250	0.452987	CTCAACCAATCACCGCATGG	59.547	55.000	0.00	0.00	42.84	3.66
2841	3315	8.647143	AAATATATTTTCTTCCAACCATTGCG	57.353	30.769	4.81	0.00	0.00	4.85
2866	3340	7.476540	ACTTATGGTGTAAGTGTGTATCTCA	57.523	36.000	0.04	0.00	36.51	3.27
2873	3347	6.092259	GGTGTAAGTGTGTATCTCATGTTTCC	59.908	42.308	0.00	0.00	0.00	3.13
2884	3358	3.996363	TCTCATGTTTCCGATTGACACAG	59.004	43.478	0.00	0.00	37.11	3.66
2913	3389	3.446873	ACCACATGACTTTTCTTTGTGCA	59.553	39.130	0.00	0.00	36.25	4.57
2953	3429	1.079127	CTTGTGTAGAGGCGGGGTG	60.079	63.158	0.00	0.00	0.00	4.61
2958	3434	3.680196	TAGAGGCGGGGTGGGAGT	61.680	66.667	0.00	0.00	0.00	3.85
2959	3435	3.248248	TAGAGGCGGGGTGGGAGTT	62.248	63.158	0.00	0.00	0.00	3.01
2960	3436	4.410400	GAGGCGGGGTGGGAGTTG	62.410	72.222	0.00	0.00	0.00	3.16
2961	3437	4.974438	AGGCGGGGTGGGAGTTGA	62.974	66.667	0.00	0.00	0.00	3.18
2962	3438	3.961414	GGCGGGGTGGGAGTTGAA	61.961	66.667	0.00	0.00	0.00	2.69
2963	3439	2.671963	GCGGGGTGGGAGTTGAAC	60.672	66.667	0.00	0.00	0.00	3.18
2964	3440	3.157680	CGGGGTGGGAGTTGAACT	58.842	61.111	0.00	0.00	0.00	3.01
2965	3441	1.302511	CGGGGTGGGAGTTGAACTG	60.303	63.158	0.90	0.00	0.00	3.16
3006	3482	2.428890	CCCCGCTAACATGGCATAAAAA	59.571	45.455	0.00	0.00	0.00	1.94
3023	3499	7.861872	GGCATAAAAATTTTCAAGCAACAACAT	59.138	29.630	17.55	0.00	0.00	2.71
3064	3540	9.431887	TGTTTCGTAGTTTCTAGCAAGATTATT	57.568	29.630	0.00	0.00	0.00	1.40
3178	3655	9.872684	AAAAGATGTCATGTATTTCCATATCCT	57.127	29.630	0.00	0.00	0.00	3.24
3362	3839	3.512516	GAATGCCGGCAGCTGGAC	61.513	66.667	35.36	16.93	44.23	4.02
3371	3848	1.599047	GCAGCTGGACTTCTGGCTA	59.401	57.895	17.12	0.00	33.43	3.93
3378	3855	3.307059	GCTGGACTTCTGGCTAGAAAAGA	60.307	47.826	13.95	0.00	42.11	2.52
3438	3915	3.564225	GTCCTGAAACTCCACGAAACAAT	59.436	43.478	0.00	0.00	0.00	2.71
3554	4036	2.290393	CCCTATCTCCTGGGCCCA	59.710	66.667	26.67	26.67	36.61	5.36
3599	4081	7.094890	CCATCTTCTGCTATATCATCGCTTTTT	60.095	37.037	0.00	0.00	0.00	1.94
3634	4116	0.991146	TGGGCAAGCCTACAGAATGA	59.009	50.000	11.40	0.00	36.32	2.57
3638	4120	3.258123	GGGCAAGCCTACAGAATGAAAAA	59.742	43.478	11.40	0.00	36.32	1.94
3653	4135	3.599285	AAAATCCGCCGCCACGAGA	62.599	57.895	0.00	0.00	34.06	4.04
3664	4146	1.663739	CCACGAGACGGAACCTTGA	59.336	57.895	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
63	67	5.009410	AGCATGCTAGCAAAATAGACCATTC	59.991	40.000	23.54	0.00	36.85	2.67
466	496	1.129437	CTCGCTCAGCTTTAGCAAACC	59.871	52.381	16.09	0.00	45.16	3.27
619	652	1.943340	GGATTCTCTCGATTTGGGTGC	59.057	52.381	0.00	0.00	0.00	5.01
923	1116	0.687354	GAGGGACACAGAGGAGCAAA	59.313	55.000	0.00	0.00	0.00	3.68
1068	1267	1.744639	GAGCATCATCTCGGGCAGA	59.255	57.895	0.00	0.00	34.78	4.26
1314	1513	1.448540	CGGCGCATCTTCTTCCACT	60.449	57.895	10.83	0.00	0.00	4.00
1457	1686	2.048127	GTGCCTGACGTCCACCTC	60.048	66.667	14.12	0.00	0.00	3.85
1561	1793	4.980592	TCCACCTCCAGCAGCCCA	62.981	66.667	0.00	0.00	0.00	5.36
1566	1798	4.007644	CGTGCTCCACCTCCAGCA	62.008	66.667	0.00	0.00	43.49	4.41
1704	1936	0.450583	GTCGTGCGGTCTACTCATGA	59.549	55.000	0.00	0.00	0.00	3.07
1872	2104	4.148838	CCATGTTGAAGGTTTCCTTACCA	58.851	43.478	0.75	0.04	44.82	3.25
1899	2133	2.159476	ACGACTATGTACGTGCATTCGT	60.159	45.455	28.84	28.84	45.97	3.85
1900	2134	2.447250	ACGACTATGTACGTGCATTCG	58.553	47.619	27.83	27.83	41.17	3.34
1997	2453	7.910683	CAGAGAGAAAAGTTGTAGTTGTTTTCC	59.089	37.037	0.00	0.00	38.93	3.13
1998	2454	8.451748	ACAGAGAGAAAAGTTGTAGTTGTTTTC	58.548	33.333	0.00	0.00	38.59	2.29
2020	2478	1.209261	ACACATGTCCACACACACAGA	59.791	47.619	0.00	0.00	34.48	3.41
2021	2479	1.599071	GACACATGTCCACACACACAG	59.401	52.381	0.00	0.00	39.07	3.66
2178	2650	1.289066	CTTGTCGAGCAACTCCGGA	59.711	57.895	2.93	2.93	32.90	5.14
2190	2662	1.027255	TCTCCTCGAGAGCCTTGTCG	61.027	60.000	15.71	0.00	42.90	4.35
2200	2672	2.196925	CCCGGTCCATCTCCTCGAG	61.197	68.421	5.13	5.13	0.00	4.04
2202	2674	2.442272	ACCCGGTCCATCTCCTCG	60.442	66.667	0.00	0.00	0.00	4.63
2247	2719	3.263425	AGTTAAGTTGTGGGATGTCCGAT	59.737	43.478	0.00	0.00	38.76	4.18
2310	2782	1.810755	GGCAAGTTAAAGGAAGGGACG	59.189	52.381	0.00	0.00	0.00	4.79
2314	2786	1.243902	TGCGGCAAGTTAAAGGAAGG	58.756	50.000	0.00	0.00	0.00	3.46
2376	2848	0.183492	GGATGACATGGCTGCCCTTA	59.817	55.000	17.53	0.00	0.00	2.69
2397	2869	3.322466	CCCAGGCCAGTCCGACTT	61.322	66.667	5.01	0.00	40.77	3.01
2426	2898	2.435938	GCGGCTCGTCCCAAATGA	60.436	61.111	0.00	0.00	0.00	2.57
2598	3070	0.770499	TGGTCCATGTGAAGCCTTGA	59.230	50.000	0.00	0.00	0.00	3.02
2601	3073	1.620822	GTTTGGTCCATGTGAAGCCT	58.379	50.000	0.00	0.00	0.00	4.58
2728	3200	5.534207	TTACTTGTTTAACAGACCCGAGA	57.466	39.130	0.00	0.00	0.00	4.04
2778	3250	2.817844	TCCATATCAAGCAGATGCATGC	59.182	45.455	11.82	11.82	46.88	4.06
2841	3315	7.544622	TGAGATACACACTTACACCATAAGTC	58.455	38.462	0.00	0.00	35.76	3.01
2866	3340	3.738982	TGACTGTGTCAATCGGAAACAT	58.261	40.909	0.00	0.00	42.82	2.71
2873	3347	1.673033	GGTCCCTGACTGTGTCAATCG	60.673	57.143	2.00	0.00	42.26	3.34
2884	3358	2.568623	AAAGTCATGTGGTCCCTGAC	57.431	50.000	7.82	7.82	39.63	3.51
2913	3389	6.777213	AGTTCACACTAGTCGGAATCTTAT	57.223	37.500	8.53	0.00	0.00	1.73
2953	3429	3.541632	TGACTTCAACAGTTCAACTCCC	58.458	45.455	0.00	0.00	35.01	4.30
2958	3434	3.138304	CCGGATGACTTCAACAGTTCAA	58.862	45.455	0.00	0.00	35.01	2.69
2959	3435	2.367241	TCCGGATGACTTCAACAGTTCA	59.633	45.455	0.00	0.00	35.01	3.18
2960	3436	3.040147	TCCGGATGACTTCAACAGTTC	57.960	47.619	0.00	0.00	35.01	3.01
2961	3437	3.338249	CATCCGGATGACTTCAACAGTT	58.662	45.455	36.42	0.00	41.20	3.16
2962	3438	2.936993	GCATCCGGATGACTTCAACAGT	60.937	50.000	41.87	3.81	41.20	3.55
2963	3439	1.667724	GCATCCGGATGACTTCAACAG	59.332	52.381	41.87	16.59	41.20	3.16
2964	3440	1.003003	TGCATCCGGATGACTTCAACA	59.997	47.619	41.87	26.78	41.20	3.33
2965	3441	1.398390	GTGCATCCGGATGACTTCAAC	59.602	52.381	41.87	24.70	41.20	3.18
3040	3516	8.879759	CCAATAATCTTGCTAGAAACTACGAAA	58.120	33.333	0.99	0.00	33.20	3.46
3178	3655	5.362105	AGGTTACCGAGCCATGTATTTTA	57.638	39.130	0.00	0.00	0.00	1.52
3362	3839	5.456265	GTTTGCTTCTTTTCTAGCCAGAAG	58.544	41.667	15.77	15.77	44.39	2.85
3371	3848	4.712122	TTCCAACGTTTGCTTCTTTTCT	57.288	36.364	0.00	0.00	0.00	2.52
3378	3855	4.583073	AGAATAGGTTTCCAACGTTTGCTT	59.417	37.500	0.00	0.00	0.00	3.91
3634	4116	2.670251	TCGTGGCGGCGGATTTTT	60.670	55.556	9.78	0.00	0.00	1.94
3653	4135	0.682852	TGATTCCGTCAAGGTTCCGT	59.317	50.000	0.00	0.00	41.99	4.69
3664	4146	2.366916	CAGAGCCCTAGATTGATTCCGT	59.633	50.000	0.00	0.00	0.00	4.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.