Multiple sequence alignment - TraesCS3B01G345700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G345700 chr3B 100.000 4282 0 0 969 5250 555273668 555269387 0.000000e+00 7908.0
1 TraesCS3B01G345700 chr3B 95.270 888 36 5 2963 3849 270858608 270859490 0.000000e+00 1402.0
2 TraesCS3B01G345700 chr3B 94.525 895 36 7 3851 4743 555204072 555203189 0.000000e+00 1369.0
3 TraesCS3B01G345700 chr3B 100.000 680 0 0 1 680 555274636 555273957 0.000000e+00 1256.0
4 TraesCS3B01G345700 chr3B 91.150 791 58 6 3905 4693 270870041 270870821 0.000000e+00 1062.0
5 TraesCS3B01G345700 chr3B 97.908 239 5 0 1 239 555307590 555307352 1.050000e-111 414.0
6 TraesCS3B01G345700 chr3B 95.798 238 10 0 3 240 413625958 413625721 8.250000e-103 385.0
7 TraesCS3B01G345700 chr3B 95.781 237 10 0 3 239 671298995 671299231 2.970000e-102 383.0
8 TraesCS3B01G345700 chr3B 94.634 205 10 1 2570 2773 270858408 270858612 3.050000e-82 316.0
9 TraesCS3B01G345700 chr3B 97.414 116 3 0 3699 3814 555226542 555226427 1.150000e-46 198.0
10 TraesCS3B01G345700 chr3B 94.444 90 3 1 3609 3698 555243157 555243070 2.550000e-28 137.0
11 TraesCS3B01G345700 chr3B 93.443 61 4 0 3851 3911 270859743 270859803 2.010000e-14 91.6
12 TraesCS3B01G345700 chr3B 100.000 48 0 0 3805 3852 555204368 555204321 7.240000e-14 89.8
13 TraesCS3B01G345700 chr3B 100.000 43 0 0 4753 4795 122310323 122310281 4.360000e-11 80.5
14 TraesCS3B01G345700 chr3A 98.441 2886 36 6 969 3852 562908597 562911475 0.000000e+00 5072.0
15 TraesCS3B01G345700 chr3A 98.693 918 8 2 3851 4764 562911724 562912641 0.000000e+00 1626.0
16 TraesCS3B01G345700 chr3A 95.399 326 10 4 4796 5119 562912634 562912956 1.010000e-141 514.0
17 TraesCS3B01G345700 chr3A 86.928 459 37 7 4796 5250 563387508 563387947 1.310000e-135 494.0
18 TraesCS3B01G345700 chr3A 94.574 258 7 6 4519 4769 563387264 563387521 4.930000e-105 392.0
19 TraesCS3B01G345700 chr3A 96.861 223 5 2 446 667 562907891 562908112 6.420000e-99 372.0
20 TraesCS3B01G345700 chr3A 97.260 146 4 0 5105 5250 562913257 562913402 1.130000e-61 248.0
21 TraesCS3B01G345700 chr3A 84.615 65 10 0 245 309 719817895 719817831 1.220000e-06 65.8
22 TraesCS3B01G345700 chr3D 98.374 2890 40 4 969 3852 425158822 425155934 0.000000e+00 5070.0
23 TraesCS3B01G345700 chr3D 98.158 923 11 3 3851 4767 425155685 425154763 0.000000e+00 1605.0
24 TraesCS3B01G345700 chr3D 95.751 353 11 4 331 680 425159706 425159355 2.740000e-157 566.0
25 TraesCS3B01G345700 chr3D 89.474 342 29 7 4849 5187 425154746 425154409 4.860000e-115 425.0
26 TraesCS3B01G345700 chr3D 85.185 189 21 5 4879 5060 30359847 30360035 2.500000e-43 187.0
27 TraesCS3B01G345700 chr3D 82.090 201 21 10 4310 4507 425150676 425150488 1.960000e-34 158.0
28 TraesCS3B01G345700 chr3D 97.753 89 2 0 237 325 425169955 425169867 2.530000e-33 154.0
29 TraesCS3B01G345700 chr3D 84.615 65 10 0 245 309 590064887 590064823 1.220000e-06 65.8
30 TraesCS3B01G345700 chr3D 100.000 28 0 0 4796 4823 425154773 425154746 1.000000e-02 52.8
31 TraesCS3B01G345700 chr7D 96.814 722 20 1 3128 3849 277556626 277557344 0.000000e+00 1203.0
32 TraesCS3B01G345700 chr7D 92.190 589 32 8 4108 4693 277557800 277558377 0.000000e+00 821.0
33 TraesCS3B01G345700 chr7D 96.954 197 5 1 2570 2766 277556435 277556630 3.920000e-86 329.0
34 TraesCS3B01G345700 chr7D 94.286 210 10 2 3851 4059 277557597 277557805 2.360000e-83 320.0
35 TraesCS3B01G345700 chr7D 82.474 194 27 5 4872 5059 198499453 198499645 4.210000e-36 163.0
36 TraesCS3B01G345700 chr7D 92.453 53 2 1 319 369 520858058 520858006 2.030000e-09 75.0
37 TraesCS3B01G345700 chr2D 91.489 376 26 5 4321 4693 70028631 70029003 3.630000e-141 512.0
38 TraesCS3B01G345700 chr2D 94.118 119 6 1 5093 5210 445616979 445616861 4.180000e-41 180.0
39 TraesCS3B01G345700 chr2D 92.437 119 8 1 5090 5207 73773709 73773827 9.040000e-38 169.0
40 TraesCS3B01G345700 chr2D 92.437 119 8 1 5090 5207 106457045 106457163 9.040000e-38 169.0
41 TraesCS3B01G345700 chr2D 93.636 110 5 1 2570 2679 70028502 70028609 4.210000e-36 163.0
42 TraesCS3B01G345700 chr2D 81.500 200 30 5 4875 5067 8983426 8983625 1.960000e-34 158.0
43 TraesCS3B01G345700 chr2D 92.308 52 3 1 319 369 48132494 48132545 7.290000e-09 73.1
44 TraesCS3B01G345700 chr2B 90.789 380 26 6 4321 4693 773921019 773921396 2.820000e-137 499.0
45 TraesCS3B01G345700 chr2B 95.816 239 10 0 1 239 263390703 263390465 2.290000e-103 387.0
46 TraesCS3B01G345700 chr2B 95.436 241 11 0 3 243 476712103 476712343 8.250000e-103 385.0
47 TraesCS3B01G345700 chr2B 95.455 110 5 0 2570 2679 773920888 773920997 5.400000e-40 176.0
48 TraesCS3B01G345700 chr2B 91.525 59 1 4 4738 4795 580287689 580287634 1.570000e-10 78.7
49 TraesCS3B01G345700 chr7B 95.816 239 10 0 1 239 124935667 124935905 2.290000e-103 387.0
50 TraesCS3B01G345700 chr1B 95.816 239 10 0 1 239 184324159 184324397 2.290000e-103 387.0
51 TraesCS3B01G345700 chr5B 95.816 239 9 1 1 238 167400084 167400322 8.250000e-103 385.0
52 TraesCS3B01G345700 chr5B 89.474 57 4 2 319 373 686877133 686877189 2.620000e-08 71.3
53 TraesCS3B01G345700 chr5B 89.474 57 4 2 319 373 686931812 686931868 2.620000e-08 71.3
54 TraesCS3B01G345700 chr5B 97.436 39 1 0 245 283 290029997 290029959 3.390000e-07 67.6
55 TraesCS3B01G345700 chr4B 95.397 239 11 0 1 239 520406042 520406280 1.070000e-101 381.0
56 TraesCS3B01G345700 chr4B 92.063 126 8 2 5087 5210 179836905 179837030 5.400000e-40 176.0
57 TraesCS3B01G345700 chr4B 94.000 50 3 0 320 369 672201228 672201277 5.640000e-10 76.8
58 TraesCS3B01G345700 chr4B 92.453 53 2 2 319 369 119336139 119336087 2.030000e-09 75.0
59 TraesCS3B01G345700 chr1A 85.714 189 21 5 4884 5067 571579089 571578902 1.490000e-45 195.0
60 TraesCS3B01G345700 chr1A 92.727 55 1 2 4740 4794 582856236 582856287 5.640000e-10 76.8
61 TraesCS3B01G345700 chr5D 85.561 187 20 5 4880 5059 462454614 462454800 6.940000e-44 189.0
62 TraesCS3B01G345700 chr4D 92.623 122 8 1 5090 5210 502993064 502993185 1.940000e-39 174.0
63 TraesCS3B01G345700 chr4D 94.231 52 1 2 4756 4805 465950532 465950481 1.570000e-10 78.7
64 TraesCS3B01G345700 chr6D 92.373 118 8 1 5094 5210 21168572 21168689 3.250000e-37 167.0
65 TraesCS3B01G345700 chr7A 83.158 190 23 8 4881 5063 130093361 130093174 1.170000e-36 165.0
66 TraesCS3B01G345700 chr2A 82.383 193 28 6 4875 5062 8042568 8042377 4.210000e-36 163.0
67 TraesCS3B01G345700 chr2A 97.959 49 1 0 4747 4795 559592106 559592058 9.370000e-13 86.1
68 TraesCS3B01G345700 chr2A 96.154 52 2 0 4744 4795 629644087 629644036 9.370000e-13 86.1
69 TraesCS3B01G345700 chr2A 91.525 59 1 4 4738 4795 640621751 640621806 1.570000e-10 78.7
70 TraesCS3B01G345700 chr2A 94.231 52 2 1 319 369 712236293 712236344 1.570000e-10 78.7
71 TraesCS3B01G345700 chr4A 87.671 73 9 0 237 309 732749977 732750049 9.370000e-13 86.1
72 TraesCS3B01G345700 chr4A 92.727 55 0 3 4741 4795 89956803 89956853 5.640000e-10 76.8
73 TraesCS3B01G345700 chr4A 92.308 52 1 2 321 369 628629071 628629122 2.620000e-08 71.3
74 TraesCS3B01G345700 chrUn 87.838 74 6 3 237 309 302758497 302758568 3.370000e-12 84.2
75 TraesCS3B01G345700 chr5A 100.000 45 0 0 4753 4797 460272708 460272664 3.370000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G345700 chr3B 555269387 555274636 5249 True 4582.00 7908 100.0000 1 5250 2 chr3B.!!$R7 5249
1 TraesCS3B01G345700 chr3B 270870041 270870821 780 False 1062.00 1062 91.1500 3905 4693 1 chr3B.!!$F1 788
2 TraesCS3B01G345700 chr3B 555203189 555204368 1179 True 729.40 1369 97.2625 3805 4743 2 chr3B.!!$R6 938
3 TraesCS3B01G345700 chr3B 270858408 270859803 1395 False 603.20 1402 94.4490 2570 3911 3 chr3B.!!$F3 1341
4 TraesCS3B01G345700 chr3A 562907891 562913402 5511 False 1566.40 5072 97.3308 446 5250 5 chr3A.!!$F1 4804
5 TraesCS3B01G345700 chr3A 563387264 563387947 683 False 443.00 494 90.7510 4519 5250 2 chr3A.!!$F2 731
6 TraesCS3B01G345700 chr3D 425150488 425159706 9218 True 1312.80 5070 93.9745 331 5187 6 chr3D.!!$R3 4856
7 TraesCS3B01G345700 chr7D 277556435 277558377 1942 False 668.25 1203 95.0610 2570 4693 4 chr7D.!!$F2 2123
8 TraesCS3B01G345700 chr2D 70028502 70029003 501 False 337.50 512 92.5625 2570 4693 2 chr2D.!!$F5 2123
9 TraesCS3B01G345700 chr2B 773920888 773921396 508 False 337.50 499 93.1220 2570 4693 2 chr2B.!!$F2 2123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.034863 GGTCCATTAGTCCGGCCAAA 60.035 55.000 2.24 0.0 0.00 3.28 F
224 225 0.109913 GTCCGGATACCCCCAAATCC 59.890 60.000 7.81 0.0 38.66 3.01 F
226 227 0.110486 CCGGATACCCCCAAATCCAG 59.890 60.000 0.00 0.0 41.57 3.86 F
251 252 0.179161 CCTCAGTCGTCGCTAGGTTG 60.179 60.000 0.00 0.0 0.00 3.77 F
253 254 0.520404 TCAGTCGTCGCTAGGTTGTC 59.480 55.000 0.00 0.0 0.00 3.18 F
254 255 0.522180 CAGTCGTCGCTAGGTTGTCT 59.478 55.000 0.00 0.0 0.00 3.41 F
258 259 1.674441 TCGTCGCTAGGTTGTCTATGG 59.326 52.381 0.00 0.0 0.00 2.74 F
259 260 1.674441 CGTCGCTAGGTTGTCTATGGA 59.326 52.381 0.00 0.0 0.00 3.41 F
1681 2248 1.741401 CAGATTCGCCGAACCTGCA 60.741 57.895 8.52 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1131 1693 0.686769 AGGAAGTTCCGGTAGGCGAT 60.687 55.000 16.31 0.00 42.75 4.58 R
1275 1840 2.540931 ACCGTACACAAACTTAGCAACG 59.459 45.455 0.00 0.00 0.00 4.10 R
1338 1903 2.639839 TGGGCTTGAGAAGAAACTAGCT 59.360 45.455 0.00 0.00 35.81 3.32 R
1508 2075 3.567164 CAGGAACAGAACAAGCTTCATGT 59.433 43.478 0.00 0.00 0.00 3.21 R
1681 2248 5.401550 CAATGCATTCCAACAAACGAGTAT 58.598 37.500 9.53 0.00 0.00 2.12 R
2059 2627 6.688073 AGGTGGAGATCTCAGTTTTCTTAA 57.312 37.500 23.85 0.00 0.00 1.85 R
2514 3082 4.441634 CGGGAATAGACAGGAAAGTACAGG 60.442 50.000 0.00 0.00 0.00 4.00 R
2950 3518 8.617290 TGTATATAGATTGTAAGAGCGACAGA 57.383 34.615 0.00 0.00 0.00 3.41 R
4559 5386 2.669434 GCAACATCATGATGCACCAAAC 59.331 45.455 31.17 13.02 44.27 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.708576 CCCTCTAAGGAATAAACCCTCC 57.291 50.000 0.00 0.00 37.67 4.30
22 23 3.071167 CCCTCTAAGGAATAAACCCTCCG 59.929 52.174 0.00 0.00 37.67 4.63
23 24 3.071167 CCTCTAAGGAATAAACCCTCCGG 59.929 52.174 0.00 0.00 37.67 5.14
24 25 5.428113 CCTCTAAGGAATAAACCCTCCGGT 61.428 50.000 0.00 0.00 40.70 5.28
25 26 6.868544 CCTCTAAGGAATAAACCCTCCGGTT 61.869 48.000 0.00 0.00 46.53 4.44
37 38 3.899980 ACCCTCCGGTTTATATAGACACC 59.100 47.826 0.00 2.59 40.58 4.16
54 55 3.830698 CGGAGGGGGTTAGGGTTT 58.169 61.111 0.00 0.00 0.00 3.27
55 56 3.010627 CGGAGGGGGTTAGGGTTTA 57.989 57.895 0.00 0.00 0.00 2.01
56 57 0.543277 CGGAGGGGGTTAGGGTTTAC 59.457 60.000 0.00 0.00 0.00 2.01
57 58 1.672529 GGAGGGGGTTAGGGTTTACA 58.327 55.000 0.00 0.00 0.00 2.41
58 59 1.283029 GGAGGGGGTTAGGGTTTACAC 59.717 57.143 0.00 0.00 0.00 2.90
59 60 1.987368 GAGGGGGTTAGGGTTTACACA 59.013 52.381 0.00 0.00 0.00 3.72
60 61 1.990327 AGGGGGTTAGGGTTTACACAG 59.010 52.381 0.00 0.00 0.00 3.66
61 62 1.987368 GGGGGTTAGGGTTTACACAGA 59.013 52.381 0.00 0.00 0.00 3.41
62 63 2.026542 GGGGGTTAGGGTTTACACAGAG 60.027 54.545 0.00 0.00 0.00 3.35
63 64 2.641321 GGGGTTAGGGTTTACACAGAGT 59.359 50.000 0.00 0.00 0.00 3.24
64 65 3.307269 GGGGTTAGGGTTTACACAGAGTC 60.307 52.174 0.00 0.00 0.00 3.36
65 66 3.582780 GGTTAGGGTTTACACAGAGTCG 58.417 50.000 0.00 0.00 0.00 4.18
66 67 3.582780 GTTAGGGTTTACACAGAGTCGG 58.417 50.000 0.00 0.00 0.00 4.79
67 68 1.713297 AGGGTTTACACAGAGTCGGT 58.287 50.000 0.00 0.00 0.00 4.69
68 69 2.044758 AGGGTTTACACAGAGTCGGTT 58.955 47.619 0.00 0.00 0.00 4.44
69 70 3.233507 AGGGTTTACACAGAGTCGGTTA 58.766 45.455 0.00 0.00 0.00 2.85
70 71 3.006217 AGGGTTTACACAGAGTCGGTTAC 59.994 47.826 0.00 0.00 0.00 2.50
71 72 3.243839 GGGTTTACACAGAGTCGGTTACA 60.244 47.826 0.00 0.00 0.00 2.41
72 73 4.370917 GGTTTACACAGAGTCGGTTACAA 58.629 43.478 0.00 0.00 0.00 2.41
73 74 4.810491 GGTTTACACAGAGTCGGTTACAAA 59.190 41.667 0.00 0.00 0.00 2.83
74 75 5.050567 GGTTTACACAGAGTCGGTTACAAAG 60.051 44.000 0.00 0.00 0.00 2.77
75 76 5.518848 TTACACAGAGTCGGTTACAAAGA 57.481 39.130 0.00 0.00 0.00 2.52
76 77 4.395959 ACACAGAGTCGGTTACAAAGAA 57.604 40.909 0.00 0.00 0.00 2.52
77 78 4.369182 ACACAGAGTCGGTTACAAAGAAG 58.631 43.478 0.00 0.00 0.00 2.85
78 79 3.741344 CACAGAGTCGGTTACAAAGAAGG 59.259 47.826 0.00 0.00 0.00 3.46
79 80 3.640029 ACAGAGTCGGTTACAAAGAAGGA 59.360 43.478 0.00 0.00 0.00 3.36
80 81 4.100498 ACAGAGTCGGTTACAAAGAAGGAA 59.900 41.667 0.00 0.00 0.00 3.36
81 82 5.054477 CAGAGTCGGTTACAAAGAAGGAAA 58.946 41.667 0.00 0.00 0.00 3.13
82 83 5.701290 CAGAGTCGGTTACAAAGAAGGAAAT 59.299 40.000 0.00 0.00 0.00 2.17
83 84 6.872020 CAGAGTCGGTTACAAAGAAGGAAATA 59.128 38.462 0.00 0.00 0.00 1.40
84 85 7.549488 CAGAGTCGGTTACAAAGAAGGAAATAT 59.451 37.037 0.00 0.00 0.00 1.28
85 86 8.755977 AGAGTCGGTTACAAAGAAGGAAATATA 58.244 33.333 0.00 0.00 0.00 0.86
86 87 9.374838 GAGTCGGTTACAAAGAAGGAAATATAA 57.625 33.333 0.00 0.00 0.00 0.98
87 88 9.901172 AGTCGGTTACAAAGAAGGAAATATAAT 57.099 29.630 0.00 0.00 0.00 1.28
97 98 9.601217 AAAGAAGGAAATATAATATCCGGATCG 57.399 33.333 23.08 0.00 38.31 3.69
98 99 7.210873 AGAAGGAAATATAATATCCGGATCGC 58.789 38.462 23.08 0.67 38.31 4.58
99 100 5.855045 AGGAAATATAATATCCGGATCGCC 58.145 41.667 23.08 9.82 38.31 5.54
109 110 2.496817 GGATCGCCGAGCTTGTCT 59.503 61.111 1.16 0.00 0.00 3.41
110 111 1.153549 GGATCGCCGAGCTTGTCTT 60.154 57.895 1.16 0.00 0.00 3.01
111 112 1.148759 GGATCGCCGAGCTTGTCTTC 61.149 60.000 1.16 0.00 0.00 2.87
112 113 1.148759 GATCGCCGAGCTTGTCTTCC 61.149 60.000 0.00 0.00 0.00 3.46
113 114 1.888436 ATCGCCGAGCTTGTCTTCCA 61.888 55.000 0.00 0.00 0.00 3.53
114 115 2.383527 CGCCGAGCTTGTCTTCCAC 61.384 63.158 0.00 0.00 0.00 4.02
115 116 2.383527 GCCGAGCTTGTCTTCCACG 61.384 63.158 0.00 0.00 0.00 4.94
116 117 2.383527 CCGAGCTTGTCTTCCACGC 61.384 63.158 0.00 0.00 38.55 5.34
117 118 1.664649 CGAGCTTGTCTTCCACGCA 60.665 57.895 0.00 0.00 40.62 5.24
118 119 1.221466 CGAGCTTGTCTTCCACGCAA 61.221 55.000 0.00 0.00 40.62 4.85
119 120 0.944386 GAGCTTGTCTTCCACGCAAA 59.056 50.000 0.00 0.00 40.62 3.68
120 121 0.947244 AGCTTGTCTTCCACGCAAAG 59.053 50.000 0.00 0.00 40.62 2.77
121 122 0.040067 GCTTGTCTTCCACGCAAAGG 60.040 55.000 0.00 0.00 38.18 3.11
122 123 1.593196 CTTGTCTTCCACGCAAAGGA 58.407 50.000 0.00 0.00 0.00 3.36
123 124 1.532868 CTTGTCTTCCACGCAAAGGAG 59.467 52.381 0.00 0.00 36.33 3.69
124 125 0.756294 TGTCTTCCACGCAAAGGAGA 59.244 50.000 0.00 0.00 36.33 3.71
125 126 1.270305 TGTCTTCCACGCAAAGGAGAG 60.270 52.381 0.00 0.00 36.33 3.20
126 127 1.048601 TCTTCCACGCAAAGGAGAGT 58.951 50.000 0.00 0.00 36.33 3.24
127 128 1.000955 TCTTCCACGCAAAGGAGAGTC 59.999 52.381 0.00 0.00 36.33 3.36
128 129 0.034896 TTCCACGCAAAGGAGAGTCC 59.965 55.000 0.00 0.00 36.33 3.85
129 130 1.376037 CCACGCAAAGGAGAGTCCC 60.376 63.158 0.00 0.00 37.19 4.46
130 131 1.371183 CACGCAAAGGAGAGTCCCA 59.629 57.895 1.17 0.00 37.19 4.37
131 132 0.036010 CACGCAAAGGAGAGTCCCAT 60.036 55.000 1.17 0.00 37.19 4.00
132 133 0.250513 ACGCAAAGGAGAGTCCCATC 59.749 55.000 1.17 0.00 37.19 3.51
133 134 0.462759 CGCAAAGGAGAGTCCCATCC 60.463 60.000 1.17 0.00 37.19 3.51
134 135 0.462759 GCAAAGGAGAGTCCCATCCG 60.463 60.000 1.17 0.00 40.73 4.18
135 136 0.179000 CAAAGGAGAGTCCCATCCGG 59.821 60.000 0.00 0.00 40.73 5.14
136 137 0.042731 AAAGGAGAGTCCCATCCGGA 59.957 55.000 6.61 6.61 40.73 5.14
145 146 2.108976 CCATCCGGACATGGGACG 59.891 66.667 15.34 0.00 39.95 4.79
146 147 2.431454 CCATCCGGACATGGGACGA 61.431 63.158 15.34 0.00 39.95 4.20
147 148 1.520192 CATCCGGACATGGGACGAA 59.480 57.895 6.12 0.00 36.14 3.85
148 149 0.530650 CATCCGGACATGGGACGAAG 60.531 60.000 6.12 0.00 36.14 3.79
165 166 5.968528 ACGAAGTCTTGAGTCTTGTATCT 57.031 39.130 0.00 0.00 29.74 1.98
166 167 6.334102 ACGAAGTCTTGAGTCTTGTATCTT 57.666 37.500 0.00 0.00 29.74 2.40
167 168 6.383415 ACGAAGTCTTGAGTCTTGTATCTTC 58.617 40.000 0.00 0.00 29.74 2.87
168 169 6.016192 ACGAAGTCTTGAGTCTTGTATCTTCA 60.016 38.462 0.00 0.00 29.74 3.02
169 170 6.306837 CGAAGTCTTGAGTCTTGTATCTTCAC 59.693 42.308 0.00 0.00 32.10 3.18
170 171 5.704888 AGTCTTGAGTCTTGTATCTTCACG 58.295 41.667 0.00 0.00 0.00 4.35
171 172 4.859798 GTCTTGAGTCTTGTATCTTCACGG 59.140 45.833 0.00 0.00 0.00 4.94
172 173 4.523173 TCTTGAGTCTTGTATCTTCACGGT 59.477 41.667 0.00 0.00 0.00 4.83
173 174 4.436242 TGAGTCTTGTATCTTCACGGTC 57.564 45.455 0.00 0.00 0.00 4.79
174 175 3.192844 TGAGTCTTGTATCTTCACGGTCC 59.807 47.826 0.00 0.00 0.00 4.46
175 176 3.162666 AGTCTTGTATCTTCACGGTCCA 58.837 45.455 0.00 0.00 0.00 4.02
176 177 3.769844 AGTCTTGTATCTTCACGGTCCAT 59.230 43.478 0.00 0.00 0.00 3.41
177 178 4.223032 AGTCTTGTATCTTCACGGTCCATT 59.777 41.667 0.00 0.00 0.00 3.16
178 179 5.421056 AGTCTTGTATCTTCACGGTCCATTA 59.579 40.000 0.00 0.00 0.00 1.90
179 180 5.749109 GTCTTGTATCTTCACGGTCCATTAG 59.251 44.000 0.00 0.00 0.00 1.73
180 181 5.421056 TCTTGTATCTTCACGGTCCATTAGT 59.579 40.000 0.00 0.00 0.00 2.24
181 182 5.258456 TGTATCTTCACGGTCCATTAGTC 57.742 43.478 0.00 0.00 0.00 2.59
182 183 3.821421 ATCTTCACGGTCCATTAGTCC 57.179 47.619 0.00 0.00 0.00 3.85
186 187 2.108362 CGGTCCATTAGTCCGGCC 59.892 66.667 0.00 0.00 40.49 6.13
187 188 2.727392 CGGTCCATTAGTCCGGCCA 61.727 63.158 2.24 0.00 40.49 5.36
188 189 1.605453 GGTCCATTAGTCCGGCCAA 59.395 57.895 2.24 0.00 0.00 4.52
189 190 0.034863 GGTCCATTAGTCCGGCCAAA 60.035 55.000 2.24 0.00 0.00 3.28
190 191 1.379527 GTCCATTAGTCCGGCCAAAG 58.620 55.000 2.24 0.00 0.00 2.77
191 192 0.988832 TCCATTAGTCCGGCCAAAGT 59.011 50.000 2.24 0.00 0.00 2.66
192 193 2.093341 GTCCATTAGTCCGGCCAAAGTA 60.093 50.000 2.24 0.00 0.00 2.24
193 194 2.775384 TCCATTAGTCCGGCCAAAGTAT 59.225 45.455 2.24 0.00 0.00 2.12
194 195 3.968649 TCCATTAGTCCGGCCAAAGTATA 59.031 43.478 2.24 0.00 0.00 1.47
195 196 4.595781 TCCATTAGTCCGGCCAAAGTATAT 59.404 41.667 2.24 0.00 0.00 0.86
196 197 5.781306 TCCATTAGTCCGGCCAAAGTATATA 59.219 40.000 2.24 0.00 0.00 0.86
197 198 6.070995 TCCATTAGTCCGGCCAAAGTATATAG 60.071 42.308 2.24 0.00 0.00 1.31
198 199 6.295688 CCATTAGTCCGGCCAAAGTATATAGT 60.296 42.308 2.24 0.00 0.00 2.12
199 200 4.868314 AGTCCGGCCAAAGTATATAGTC 57.132 45.455 2.24 0.00 0.00 2.59
200 201 3.577415 AGTCCGGCCAAAGTATATAGTCC 59.423 47.826 2.24 0.00 0.00 3.85
201 202 2.559668 TCCGGCCAAAGTATATAGTCCG 59.440 50.000 2.24 7.97 35.80 4.79
202 203 2.955614 CGGCCAAAGTATATAGTCCGG 58.044 52.381 2.24 0.00 32.75 5.14
203 204 2.696506 GGCCAAAGTATATAGTCCGGC 58.303 52.381 16.68 16.68 37.57 6.13
204 205 2.302157 GGCCAAAGTATATAGTCCGGCT 59.698 50.000 21.14 0.00 38.37 5.52
205 206 3.326747 GCCAAAGTATATAGTCCGGCTG 58.673 50.000 17.30 0.00 35.39 4.85
206 207 3.244112 GCCAAAGTATATAGTCCGGCTGT 60.244 47.826 17.30 0.00 35.39 4.40
207 208 4.557205 CCAAAGTATATAGTCCGGCTGTC 58.443 47.826 0.00 0.00 0.00 3.51
208 209 4.557205 CAAAGTATATAGTCCGGCTGTCC 58.443 47.826 0.00 0.00 0.00 4.02
218 219 3.557290 GGCTGTCCGGATACCCCC 61.557 72.222 7.81 0.00 0.00 5.40
219 220 2.766651 GCTGTCCGGATACCCCCA 60.767 66.667 7.81 0.00 0.00 4.96
220 221 2.372074 GCTGTCCGGATACCCCCAA 61.372 63.158 7.81 0.00 0.00 4.12
221 222 1.917336 GCTGTCCGGATACCCCCAAA 61.917 60.000 7.81 0.00 0.00 3.28
222 223 0.843984 CTGTCCGGATACCCCCAAAT 59.156 55.000 7.81 0.00 0.00 2.32
223 224 0.841289 TGTCCGGATACCCCCAAATC 59.159 55.000 7.81 0.00 0.00 2.17
224 225 0.109913 GTCCGGATACCCCCAAATCC 59.890 60.000 7.81 0.00 38.66 3.01
225 226 0.327673 TCCGGATACCCCCAAATCCA 60.328 55.000 0.00 0.00 41.57 3.41
226 227 0.110486 CCGGATACCCCCAAATCCAG 59.890 60.000 0.00 0.00 41.57 3.86
227 228 0.110486 CGGATACCCCCAAATCCAGG 59.890 60.000 2.56 0.00 41.57 4.45
228 229 1.529744 GGATACCCCCAAATCCAGGA 58.470 55.000 0.00 0.00 41.21 3.86
229 230 1.145119 GGATACCCCCAAATCCAGGAC 59.855 57.143 0.00 0.00 41.21 3.85
230 231 2.136026 GATACCCCCAAATCCAGGACT 58.864 52.381 0.00 0.00 0.00 3.85
231 232 1.591768 TACCCCCAAATCCAGGACTC 58.408 55.000 0.00 0.00 0.00 3.36
232 233 1.214992 ACCCCCAAATCCAGGACTCC 61.215 60.000 0.00 0.00 0.00 3.85
233 234 1.615262 CCCCAAATCCAGGACTCCC 59.385 63.158 0.00 0.00 0.00 4.30
234 235 0.921256 CCCCAAATCCAGGACTCCCT 60.921 60.000 0.00 0.00 45.74 4.20
235 236 0.548510 CCCAAATCCAGGACTCCCTC 59.451 60.000 0.00 0.00 42.02 4.30
236 237 1.289160 CCAAATCCAGGACTCCCTCA 58.711 55.000 0.00 0.00 42.02 3.86
237 238 1.211457 CCAAATCCAGGACTCCCTCAG 59.789 57.143 0.00 0.00 42.02 3.35
238 239 1.912043 CAAATCCAGGACTCCCTCAGT 59.088 52.381 0.00 0.00 42.02 3.41
244 245 2.486042 GACTCCCTCAGTCGTCGC 59.514 66.667 0.00 0.00 42.43 5.19
245 246 2.034376 ACTCCCTCAGTCGTCGCT 59.966 61.111 0.00 0.00 0.00 4.93
246 247 0.743701 GACTCCCTCAGTCGTCGCTA 60.744 60.000 0.00 0.00 42.43 4.26
247 248 0.745128 ACTCCCTCAGTCGTCGCTAG 60.745 60.000 0.00 0.00 0.00 3.42
248 249 1.440938 CTCCCTCAGTCGTCGCTAGG 61.441 65.000 0.00 0.00 0.00 3.02
249 250 1.749638 CCCTCAGTCGTCGCTAGGT 60.750 63.158 0.00 0.00 0.00 3.08
250 251 1.313812 CCCTCAGTCGTCGCTAGGTT 61.314 60.000 0.00 0.00 0.00 3.50
251 252 0.179161 CCTCAGTCGTCGCTAGGTTG 60.179 60.000 0.00 0.00 0.00 3.77
252 253 0.522180 CTCAGTCGTCGCTAGGTTGT 59.478 55.000 0.00 0.00 0.00 3.32
253 254 0.520404 TCAGTCGTCGCTAGGTTGTC 59.480 55.000 0.00 0.00 0.00 3.18
254 255 0.522180 CAGTCGTCGCTAGGTTGTCT 59.478 55.000 0.00 0.00 0.00 3.41
255 256 1.736126 CAGTCGTCGCTAGGTTGTCTA 59.264 52.381 0.00 0.00 0.00 2.59
256 257 2.355132 CAGTCGTCGCTAGGTTGTCTAT 59.645 50.000 0.00 0.00 0.00 1.98
257 258 2.355132 AGTCGTCGCTAGGTTGTCTATG 59.645 50.000 0.00 0.00 0.00 2.23
258 259 1.674441 TCGTCGCTAGGTTGTCTATGG 59.326 52.381 0.00 0.00 0.00 2.74
259 260 1.674441 CGTCGCTAGGTTGTCTATGGA 59.326 52.381 0.00 0.00 0.00 3.41
260 261 2.293677 CGTCGCTAGGTTGTCTATGGAT 59.706 50.000 0.00 0.00 0.00 3.41
261 262 3.609644 CGTCGCTAGGTTGTCTATGGATC 60.610 52.174 0.00 0.00 0.00 3.36
262 263 3.570550 GTCGCTAGGTTGTCTATGGATCT 59.429 47.826 0.00 0.00 0.00 2.75
263 264 3.570125 TCGCTAGGTTGTCTATGGATCTG 59.430 47.826 0.00 0.00 0.00 2.90
264 265 3.305676 CGCTAGGTTGTCTATGGATCTGG 60.306 52.174 0.00 0.00 0.00 3.86
265 266 3.898123 GCTAGGTTGTCTATGGATCTGGA 59.102 47.826 0.00 0.00 0.00 3.86
266 267 4.530161 GCTAGGTTGTCTATGGATCTGGAT 59.470 45.833 0.00 0.00 0.00 3.41
267 268 4.970860 AGGTTGTCTATGGATCTGGATG 57.029 45.455 0.00 0.00 0.00 3.51
268 269 4.302067 AGGTTGTCTATGGATCTGGATGT 58.698 43.478 0.00 0.00 0.00 3.06
269 270 5.467738 AGGTTGTCTATGGATCTGGATGTA 58.532 41.667 0.00 0.00 0.00 2.29
270 271 5.541868 AGGTTGTCTATGGATCTGGATGTAG 59.458 44.000 0.00 0.00 0.00 2.74
271 272 5.305644 GGTTGTCTATGGATCTGGATGTAGT 59.694 44.000 0.00 0.00 0.00 2.73
272 273 6.183361 GGTTGTCTATGGATCTGGATGTAGTT 60.183 42.308 0.00 0.00 0.00 2.24
273 274 7.275920 GTTGTCTATGGATCTGGATGTAGTTT 58.724 38.462 0.00 0.00 0.00 2.66
274 275 7.437713 TGTCTATGGATCTGGATGTAGTTTT 57.562 36.000 0.00 0.00 0.00 2.43
275 276 7.861629 TGTCTATGGATCTGGATGTAGTTTTT 58.138 34.615 0.00 0.00 0.00 1.94
276 277 8.988060 TGTCTATGGATCTGGATGTAGTTTTTA 58.012 33.333 0.00 0.00 0.00 1.52
305 306 7.933728 TTGTGAATTTCATTGTTCTGACATG 57.066 32.000 1.78 0.00 35.29 3.21
306 307 7.274603 TGTGAATTTCATTGTTCTGACATGA 57.725 32.000 0.00 0.00 35.29 3.07
307 308 7.888424 TGTGAATTTCATTGTTCTGACATGAT 58.112 30.769 0.00 0.00 35.29 2.45
308 309 8.361889 TGTGAATTTCATTGTTCTGACATGATT 58.638 29.630 0.00 0.00 35.29 2.57
309 310 9.199982 GTGAATTTCATTGTTCTGACATGATTT 57.800 29.630 0.00 0.00 35.29 2.17
310 311 9.767228 TGAATTTCATTGTTCTGACATGATTTT 57.233 25.926 0.00 0.00 35.29 1.82
339 340 5.060506 ACCGTTGTACTGTCATGATTGAAA 58.939 37.500 0.00 0.00 32.48 2.69
352 353 9.328845 TGTCATGATTGAAAATGAATAGATCGA 57.671 29.630 0.00 0.00 34.70 3.59
1058 1620 3.491356 CATCATGTTCGTTTTCATGCGT 58.509 40.909 0.00 0.00 40.54 5.24
1059 1621 3.181826 TCATGTTCGTTTTCATGCGTC 57.818 42.857 0.00 0.00 40.54 5.19
1131 1693 2.671619 GCAACGGCAAGGGCTACA 60.672 61.111 0.00 0.00 40.87 2.74
1166 1728 2.638154 CTCCTCCGCCGTATCGAC 59.362 66.667 0.00 0.00 0.00 4.20
1275 1840 4.084693 CCTTAGACGAAACGAGACCAAAAC 60.085 45.833 0.00 0.00 0.00 2.43
1338 1903 3.329386 GAAGTACTGCTCATGCTTGTCA 58.671 45.455 0.00 0.00 40.48 3.58
1502 2069 7.235812 AGTTCTATCAGGGTTTGTTCTTCTAGT 59.764 37.037 0.00 0.00 0.00 2.57
1508 2075 6.887545 TCAGGGTTTGTTCTTCTAGTTTTTCA 59.112 34.615 0.00 0.00 0.00 2.69
1681 2248 1.741401 CAGATTCGCCGAACCTGCA 60.741 57.895 8.52 0.00 0.00 4.41
2059 2627 7.569240 TCAACAAATTATTTGGTTTCAAGGGT 58.431 30.769 20.00 0.00 44.81 4.34
2456 3024 6.049955 AGCTAAAATGGTAGTGCAAGACTA 57.950 37.500 0.00 0.00 35.96 2.59
2774 3342 7.847711 TTTTTCCTATTCCTTTCACCAATGA 57.152 32.000 0.00 0.00 0.00 2.57
2782 3350 5.549742 TCCTTTCACCAATGATTTTTGCT 57.450 34.783 0.00 0.00 33.85 3.91
2950 3518 5.185828 GGGAAATCAATGTAAACTTCCTGCT 59.814 40.000 0.00 0.00 34.13 4.24
3034 3602 6.655003 GGTCCTCTGATCAATTTTCTGTTGTA 59.345 38.462 0.00 0.00 0.00 2.41
4559 5386 1.627864 ACCCTGGGTTTTCAAATCCG 58.372 50.000 14.05 0.00 42.25 4.18
4749 5581 7.175293 ACAAATTGGCACGTTTAGTAGGATAAA 59.825 33.333 0.00 0.00 0.00 1.40
4750 5582 6.920569 ATTGGCACGTTTAGTAGGATAAAG 57.079 37.500 0.00 0.00 0.00 1.85
4751 5583 5.410355 TGGCACGTTTAGTAGGATAAAGT 57.590 39.130 0.00 0.00 0.00 2.66
4752 5584 5.797051 TGGCACGTTTAGTAGGATAAAGTT 58.203 37.500 0.00 0.00 0.00 2.66
4753 5585 6.934056 TGGCACGTTTAGTAGGATAAAGTTA 58.066 36.000 0.00 0.00 0.00 2.24
4754 5586 6.813152 TGGCACGTTTAGTAGGATAAAGTTAC 59.187 38.462 0.00 0.00 0.00 2.50
4755 5587 6.020360 GGCACGTTTAGTAGGATAAAGTTACG 60.020 42.308 0.00 0.00 0.00 3.18
4756 5588 6.528072 GCACGTTTAGTAGGATAAAGTTACGT 59.472 38.462 0.00 0.00 29.23 3.57
4757 5589 7.696453 GCACGTTTAGTAGGATAAAGTTACGTA 59.304 37.037 0.00 0.00 28.64 3.57
4758 5590 9.000018 CACGTTTAGTAGGATAAAGTTACGTAC 58.000 37.037 0.00 0.00 28.64 3.67
4759 5591 8.947115 ACGTTTAGTAGGATAAAGTTACGTACT 58.053 33.333 0.00 0.00 39.32 2.73
4760 5592 9.427127 CGTTTAGTAGGATAAAGTTACGTACTC 57.573 37.037 0.00 0.00 35.54 2.59
4761 5593 9.723447 GTTTAGTAGGATAAAGTTACGTACTCC 57.277 37.037 0.00 0.00 35.54 3.85
4762 5594 6.951062 AGTAGGATAAAGTTACGTACTCCC 57.049 41.667 0.00 0.00 35.54 4.30
4763 5595 6.667661 AGTAGGATAAAGTTACGTACTCCCT 58.332 40.000 0.00 4.74 35.54 4.20
4764 5596 6.770303 AGTAGGATAAAGTTACGTACTCCCTC 59.230 42.308 0.00 0.00 35.54 4.30
4765 5597 4.892345 AGGATAAAGTTACGTACTCCCTCC 59.108 45.833 0.00 0.00 35.54 4.30
4766 5598 4.261363 GGATAAAGTTACGTACTCCCTCCG 60.261 50.000 0.00 0.00 35.54 4.63
4767 5599 2.206576 AAGTTACGTACTCCCTCCGT 57.793 50.000 0.00 0.00 35.54 4.69
4768 5600 2.206576 AGTTACGTACTCCCTCCGTT 57.793 50.000 0.00 0.00 36.12 4.44
4769 5601 2.087646 AGTTACGTACTCCCTCCGTTC 58.912 52.381 0.00 0.00 36.12 3.95
4770 5602 1.133216 GTTACGTACTCCCTCCGTTCC 59.867 57.143 0.00 0.00 36.12 3.62
4771 5603 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
4772 5604 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
4773 5605 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
4774 5606 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
4775 5607 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
4776 5608 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
4777 5609 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4778 5610 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4779 5611 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4780 5612 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4781 5613 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4782 5614 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4783 5615 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4784 5616 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
4785 5617 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
4786 5618 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
4787 5619 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
4788 5620 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
4789 5621 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
4790 5622 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
4791 5623 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
4792 5624 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
4793 5625 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
4794 5626 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
4874 5706 2.042831 GCGTGATGGAGCAGGCTTT 61.043 57.895 2.48 0.00 43.98 3.51
5206 6377 1.133790 CCTTTATGGCACTGAAGCTGC 59.866 52.381 0.00 0.00 34.17 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.071167 CGGAGGGTTTATTCCTTAGAGGG 59.929 52.174 0.00 0.00 35.59 4.30
1 2 4.338379 CGGAGGGTTTATTCCTTAGAGG 57.662 50.000 0.00 0.00 34.21 3.69
22 23 3.260128 CCCCTCCGGTGTCTATATAAACC 59.740 52.174 0.00 0.68 0.00 3.27
23 24 3.260128 CCCCCTCCGGTGTCTATATAAAC 59.740 52.174 0.00 0.00 0.00 2.01
24 25 3.116629 ACCCCCTCCGGTGTCTATATAAA 60.117 47.826 0.00 0.00 33.77 1.40
25 26 2.452047 ACCCCCTCCGGTGTCTATATAA 59.548 50.000 0.00 0.00 33.77 0.98
26 27 2.076189 ACCCCCTCCGGTGTCTATATA 58.924 52.381 0.00 0.00 33.77 0.86
27 28 0.865362 ACCCCCTCCGGTGTCTATAT 59.135 55.000 0.00 0.00 33.77 0.86
28 29 0.638292 AACCCCCTCCGGTGTCTATA 59.362 55.000 0.00 0.00 35.83 1.31
29 30 0.638292 TAACCCCCTCCGGTGTCTAT 59.362 55.000 0.00 0.00 35.83 1.98
30 31 0.032813 CTAACCCCCTCCGGTGTCTA 60.033 60.000 0.00 0.00 35.83 2.59
31 32 1.305887 CTAACCCCCTCCGGTGTCT 60.306 63.158 0.00 0.00 35.83 3.41
32 33 2.364780 CCTAACCCCCTCCGGTGTC 61.365 68.421 0.00 0.00 35.83 3.67
33 34 2.285144 CCTAACCCCCTCCGGTGT 60.285 66.667 0.00 0.00 35.83 4.16
34 35 3.087906 CCCTAACCCCCTCCGGTG 61.088 72.222 0.00 0.00 35.83 4.94
35 36 2.718212 AAACCCTAACCCCCTCCGGT 62.718 60.000 0.00 0.00 37.93 5.28
36 37 0.621280 TAAACCCTAACCCCCTCCGG 60.621 60.000 0.00 0.00 0.00 5.14
37 38 0.543277 GTAAACCCTAACCCCCTCCG 59.457 60.000 0.00 0.00 0.00 4.63
38 39 1.283029 GTGTAAACCCTAACCCCCTCC 59.717 57.143 0.00 0.00 0.00 4.30
39 40 1.987368 TGTGTAAACCCTAACCCCCTC 59.013 52.381 0.00 0.00 0.00 4.30
40 41 1.990327 CTGTGTAAACCCTAACCCCCT 59.010 52.381 0.00 0.00 0.00 4.79
41 42 1.987368 TCTGTGTAAACCCTAACCCCC 59.013 52.381 0.00 0.00 0.00 5.40
42 43 2.641321 ACTCTGTGTAAACCCTAACCCC 59.359 50.000 0.00 0.00 0.00 4.95
43 44 3.615834 CGACTCTGTGTAAACCCTAACCC 60.616 52.174 0.00 0.00 0.00 4.11
44 45 3.582780 CGACTCTGTGTAAACCCTAACC 58.417 50.000 0.00 0.00 0.00 2.85
45 46 3.006217 ACCGACTCTGTGTAAACCCTAAC 59.994 47.826 0.00 0.00 0.00 2.34
46 47 3.233507 ACCGACTCTGTGTAAACCCTAA 58.766 45.455 0.00 0.00 0.00 2.69
47 48 2.880443 ACCGACTCTGTGTAAACCCTA 58.120 47.619 0.00 0.00 0.00 3.53
48 49 1.713297 ACCGACTCTGTGTAAACCCT 58.287 50.000 0.00 0.00 0.00 4.34
49 50 2.538512 AACCGACTCTGTGTAAACCC 57.461 50.000 0.00 0.00 0.00 4.11
50 51 3.981211 TGTAACCGACTCTGTGTAAACC 58.019 45.455 0.00 0.00 0.00 3.27
51 52 5.750067 TCTTTGTAACCGACTCTGTGTAAAC 59.250 40.000 0.00 0.00 0.00 2.01
52 53 5.904941 TCTTTGTAACCGACTCTGTGTAAA 58.095 37.500 0.00 0.00 0.00 2.01
53 54 5.518848 TCTTTGTAACCGACTCTGTGTAA 57.481 39.130 0.00 0.00 0.00 2.41
54 55 5.508489 CCTTCTTTGTAACCGACTCTGTGTA 60.508 44.000 0.00 0.00 0.00 2.90
55 56 4.369182 CTTCTTTGTAACCGACTCTGTGT 58.631 43.478 0.00 0.00 0.00 3.72
56 57 3.741344 CCTTCTTTGTAACCGACTCTGTG 59.259 47.826 0.00 0.00 0.00 3.66
57 58 3.640029 TCCTTCTTTGTAACCGACTCTGT 59.360 43.478 0.00 0.00 0.00 3.41
58 59 4.252971 TCCTTCTTTGTAACCGACTCTG 57.747 45.455 0.00 0.00 0.00 3.35
59 60 4.950205 TTCCTTCTTTGTAACCGACTCT 57.050 40.909 0.00 0.00 0.00 3.24
60 61 7.845066 ATATTTCCTTCTTTGTAACCGACTC 57.155 36.000 0.00 0.00 0.00 3.36
61 62 9.901172 ATTATATTTCCTTCTTTGTAACCGACT 57.099 29.630 0.00 0.00 0.00 4.18
71 72 9.601217 CGATCCGGATATTATATTTCCTTCTTT 57.399 33.333 19.15 0.00 0.00 2.52
72 73 7.711339 GCGATCCGGATATTATATTTCCTTCTT 59.289 37.037 19.15 0.00 0.00 2.52
73 74 7.210873 GCGATCCGGATATTATATTTCCTTCT 58.789 38.462 19.15 0.00 0.00 2.85
74 75 6.424207 GGCGATCCGGATATTATATTTCCTTC 59.576 42.308 19.15 0.00 0.00 3.46
75 76 6.289064 GGCGATCCGGATATTATATTTCCTT 58.711 40.000 19.15 0.00 0.00 3.36
76 77 5.855045 GGCGATCCGGATATTATATTTCCT 58.145 41.667 19.15 0.00 0.00 3.36
92 93 1.148759 GAAGACAAGCTCGGCGATCC 61.149 60.000 11.27 4.64 0.00 3.36
93 94 1.148759 GGAAGACAAGCTCGGCGATC 61.149 60.000 11.27 6.27 0.00 3.69
94 95 1.153549 GGAAGACAAGCTCGGCGAT 60.154 57.895 11.27 0.00 0.00 4.58
95 96 2.261671 GGAAGACAAGCTCGGCGA 59.738 61.111 10.14 10.14 0.00 5.54
96 97 2.048222 TGGAAGACAAGCTCGGCG 60.048 61.111 0.00 0.00 0.00 6.46
97 98 2.383527 CGTGGAAGACAAGCTCGGC 61.384 63.158 0.00 0.00 0.00 5.54
98 99 3.862124 CGTGGAAGACAAGCTCGG 58.138 61.111 0.00 0.00 0.00 4.63
103 104 1.532868 CTCCTTTGCGTGGAAGACAAG 59.467 52.381 0.00 0.00 32.61 3.16
104 105 1.140052 TCTCCTTTGCGTGGAAGACAA 59.860 47.619 0.00 0.00 32.61 3.18
105 106 0.756294 TCTCCTTTGCGTGGAAGACA 59.244 50.000 0.00 0.00 32.61 3.41
106 107 1.270358 ACTCTCCTTTGCGTGGAAGAC 60.270 52.381 0.00 0.00 32.61 3.01
107 108 1.000955 GACTCTCCTTTGCGTGGAAGA 59.999 52.381 0.00 0.00 32.61 2.87
108 109 1.433534 GACTCTCCTTTGCGTGGAAG 58.566 55.000 0.00 0.00 32.61 3.46
109 110 0.034896 GGACTCTCCTTTGCGTGGAA 59.965 55.000 0.00 0.00 32.53 3.53
110 111 1.671742 GGACTCTCCTTTGCGTGGA 59.328 57.895 0.00 0.00 32.53 4.02
111 112 1.376037 GGGACTCTCCTTTGCGTGG 60.376 63.158 0.00 0.00 36.57 4.94
112 113 0.036010 ATGGGACTCTCCTTTGCGTG 60.036 55.000 0.00 0.00 36.57 5.34
113 114 0.250513 GATGGGACTCTCCTTTGCGT 59.749 55.000 0.00 0.00 36.57 5.24
114 115 0.462759 GGATGGGACTCTCCTTTGCG 60.463 60.000 0.00 0.00 36.57 4.85
115 116 0.462759 CGGATGGGACTCTCCTTTGC 60.463 60.000 0.00 0.00 36.57 3.68
116 117 0.179000 CCGGATGGGACTCTCCTTTG 59.821 60.000 0.00 0.00 38.47 2.77
117 118 0.042731 TCCGGATGGGACTCTCCTTT 59.957 55.000 0.00 0.00 40.94 3.11
118 119 1.704082 TCCGGATGGGACTCTCCTT 59.296 57.895 0.00 0.00 40.94 3.36
119 120 3.440023 TCCGGATGGGACTCTCCT 58.560 61.111 0.00 0.00 40.94 3.69
128 129 1.966901 TTCGTCCCATGTCCGGATGG 61.967 60.000 16.07 16.07 42.45 3.51
129 130 0.530650 CTTCGTCCCATGTCCGGATG 60.531 60.000 7.81 1.85 37.70 3.51
130 131 0.976073 ACTTCGTCCCATGTCCGGAT 60.976 55.000 7.81 0.00 0.00 4.18
131 132 1.601419 GACTTCGTCCCATGTCCGGA 61.601 60.000 0.00 0.00 0.00 5.14
132 133 1.153628 GACTTCGTCCCATGTCCGG 60.154 63.158 0.00 0.00 0.00 5.14
133 134 0.246635 AAGACTTCGTCCCATGTCCG 59.753 55.000 0.00 0.00 32.18 4.79
134 135 1.275291 TCAAGACTTCGTCCCATGTCC 59.725 52.381 0.00 0.00 32.18 4.02
135 136 2.028930 ACTCAAGACTTCGTCCCATGTC 60.029 50.000 0.00 0.00 32.18 3.06
136 137 1.971357 ACTCAAGACTTCGTCCCATGT 59.029 47.619 0.00 0.00 32.18 3.21
137 138 2.232452 AGACTCAAGACTTCGTCCCATG 59.768 50.000 9.46 0.00 32.18 3.66
138 139 2.530701 AGACTCAAGACTTCGTCCCAT 58.469 47.619 9.46 0.00 32.18 4.00
139 140 1.996798 AGACTCAAGACTTCGTCCCA 58.003 50.000 9.46 0.00 32.18 4.37
140 141 2.036089 ACAAGACTCAAGACTTCGTCCC 59.964 50.000 9.46 0.00 32.18 4.46
141 142 3.372660 ACAAGACTCAAGACTTCGTCC 57.627 47.619 9.46 0.00 32.18 4.79
142 143 5.945155 AGATACAAGACTCAAGACTTCGTC 58.055 41.667 6.18 6.18 0.00 4.20
143 144 5.968528 AGATACAAGACTCAAGACTTCGT 57.031 39.130 0.00 0.00 0.00 3.85
144 145 6.306837 GTGAAGATACAAGACTCAAGACTTCG 59.693 42.308 0.00 0.00 35.49 3.79
145 146 6.306837 CGTGAAGATACAAGACTCAAGACTTC 59.693 42.308 0.00 0.00 34.03 3.01
146 147 6.153067 CGTGAAGATACAAGACTCAAGACTT 58.847 40.000 0.00 0.00 0.00 3.01
147 148 5.336055 CCGTGAAGATACAAGACTCAAGACT 60.336 44.000 0.00 0.00 0.00 3.24
148 149 4.859798 CCGTGAAGATACAAGACTCAAGAC 59.140 45.833 0.00 0.00 0.00 3.01
149 150 4.523173 ACCGTGAAGATACAAGACTCAAGA 59.477 41.667 0.00 0.00 0.00 3.02
150 151 4.810790 ACCGTGAAGATACAAGACTCAAG 58.189 43.478 0.00 0.00 0.00 3.02
151 152 4.321750 GGACCGTGAAGATACAAGACTCAA 60.322 45.833 0.00 0.00 0.00 3.02
152 153 3.192844 GGACCGTGAAGATACAAGACTCA 59.807 47.826 0.00 0.00 0.00 3.41
153 154 3.192844 TGGACCGTGAAGATACAAGACTC 59.807 47.826 0.00 0.00 0.00 3.36
154 155 3.162666 TGGACCGTGAAGATACAAGACT 58.837 45.455 0.00 0.00 0.00 3.24
155 156 3.587797 TGGACCGTGAAGATACAAGAC 57.412 47.619 0.00 0.00 0.00 3.01
156 157 4.819105 AATGGACCGTGAAGATACAAGA 57.181 40.909 0.00 0.00 0.00 3.02
157 158 5.661458 ACTAATGGACCGTGAAGATACAAG 58.339 41.667 3.82 0.00 0.00 3.16
158 159 5.394883 GGACTAATGGACCGTGAAGATACAA 60.395 44.000 3.82 0.00 0.00 2.41
159 160 4.098960 GGACTAATGGACCGTGAAGATACA 59.901 45.833 3.82 0.00 0.00 2.29
160 161 4.618965 GGACTAATGGACCGTGAAGATAC 58.381 47.826 3.82 0.00 0.00 2.24
161 162 3.317149 CGGACTAATGGACCGTGAAGATA 59.683 47.826 0.00 0.00 41.47 1.98
162 163 2.100916 CGGACTAATGGACCGTGAAGAT 59.899 50.000 0.00 0.00 41.47 2.40
163 164 1.475280 CGGACTAATGGACCGTGAAGA 59.525 52.381 0.00 0.00 41.47 2.87
164 165 1.470979 CCGGACTAATGGACCGTGAAG 60.471 57.143 0.00 0.00 44.34 3.02
165 166 0.533491 CCGGACTAATGGACCGTGAA 59.467 55.000 0.00 0.00 44.34 3.18
166 167 1.952102 GCCGGACTAATGGACCGTGA 61.952 60.000 5.05 0.00 44.34 4.35
167 168 1.520787 GCCGGACTAATGGACCGTG 60.521 63.158 5.05 0.14 44.34 4.94
168 169 2.728435 GGCCGGACTAATGGACCGT 61.728 63.158 5.05 0.00 44.34 4.83
169 170 2.108362 GGCCGGACTAATGGACCG 59.892 66.667 5.05 0.17 45.24 4.79
170 171 0.034863 TTTGGCCGGACTAATGGACC 60.035 55.000 9.82 0.00 29.51 4.46
171 172 1.339727 ACTTTGGCCGGACTAATGGAC 60.340 52.381 9.82 0.00 0.00 4.02
172 173 0.988832 ACTTTGGCCGGACTAATGGA 59.011 50.000 9.82 0.00 0.00 3.41
173 174 2.702592 TACTTTGGCCGGACTAATGG 57.297 50.000 9.82 0.00 0.00 3.16
174 175 6.698380 ACTATATACTTTGGCCGGACTAATG 58.302 40.000 9.82 6.34 0.00 1.90
175 176 6.070938 GGACTATATACTTTGGCCGGACTAAT 60.071 42.308 9.82 0.00 0.00 1.73
176 177 5.244626 GGACTATATACTTTGGCCGGACTAA 59.755 44.000 9.82 6.38 0.00 2.24
177 178 4.768968 GGACTATATACTTTGGCCGGACTA 59.231 45.833 9.82 0.00 0.00 2.59
178 179 3.577415 GGACTATATACTTTGGCCGGACT 59.423 47.826 9.82 0.00 0.00 3.85
179 180 3.613432 CGGACTATATACTTTGGCCGGAC 60.613 52.174 5.05 0.56 34.29 4.79
180 181 2.559668 CGGACTATATACTTTGGCCGGA 59.440 50.000 5.05 0.00 34.29 5.14
181 182 2.955614 CGGACTATATACTTTGGCCGG 58.044 52.381 6.17 0.00 34.29 6.13
182 183 2.929592 GCCGGACTATATACTTTGGCCG 60.930 54.545 5.05 6.96 35.24 6.13
183 184 2.302157 AGCCGGACTATATACTTTGGCC 59.698 50.000 5.05 0.00 42.14 5.36
184 185 3.244112 ACAGCCGGACTATATACTTTGGC 60.244 47.826 5.05 0.00 41.50 4.52
185 186 4.557205 GACAGCCGGACTATATACTTTGG 58.443 47.826 5.05 0.00 0.00 3.28
186 187 4.557205 GGACAGCCGGACTATATACTTTG 58.443 47.826 5.05 0.00 0.00 2.77
187 188 4.868314 GGACAGCCGGACTATATACTTT 57.132 45.455 5.05 0.00 0.00 2.66
201 202 3.557290 GGGGGTATCCGGACAGCC 61.557 72.222 23.00 23.00 36.01 4.85
202 203 1.917336 TTTGGGGGTATCCGGACAGC 61.917 60.000 6.12 4.13 36.01 4.40
203 204 0.843984 ATTTGGGGGTATCCGGACAG 59.156 55.000 6.12 0.00 36.01 3.51
204 205 0.841289 GATTTGGGGGTATCCGGACA 59.159 55.000 6.12 0.00 36.01 4.02
205 206 0.109913 GGATTTGGGGGTATCCGGAC 59.890 60.000 6.12 0.00 36.01 4.79
206 207 0.327673 TGGATTTGGGGGTATCCGGA 60.328 55.000 6.61 6.61 42.67 5.14
207 208 0.110486 CTGGATTTGGGGGTATCCGG 59.890 60.000 0.00 0.00 42.67 5.14
208 209 0.110486 CCTGGATTTGGGGGTATCCG 59.890 60.000 0.00 0.00 42.67 4.18
209 210 1.145119 GTCCTGGATTTGGGGGTATCC 59.855 57.143 0.00 0.00 40.62 2.59
210 211 2.106684 GAGTCCTGGATTTGGGGGTATC 59.893 54.545 0.00 0.00 0.00 2.24
211 212 2.136026 GAGTCCTGGATTTGGGGGTAT 58.864 52.381 0.00 0.00 0.00 2.73
212 213 1.591768 GAGTCCTGGATTTGGGGGTA 58.408 55.000 0.00 0.00 0.00 3.69
213 214 1.214992 GGAGTCCTGGATTTGGGGGT 61.215 60.000 0.41 0.00 0.00 4.95
214 215 1.615262 GGAGTCCTGGATTTGGGGG 59.385 63.158 0.41 0.00 0.00 5.40
215 216 0.921256 AGGGAGTCCTGGATTTGGGG 60.921 60.000 9.58 0.00 42.98 4.96
216 217 0.548510 GAGGGAGTCCTGGATTTGGG 59.451 60.000 9.58 0.00 45.05 4.12
217 218 1.211457 CTGAGGGAGTCCTGGATTTGG 59.789 57.143 9.58 0.00 45.05 3.28
218 219 1.912043 ACTGAGGGAGTCCTGGATTTG 59.088 52.381 9.58 0.00 45.05 2.32
219 220 2.192263 GACTGAGGGAGTCCTGGATTT 58.808 52.381 9.58 0.00 44.95 2.17
220 221 1.872773 GACTGAGGGAGTCCTGGATT 58.127 55.000 9.58 0.00 44.95 3.01
221 222 3.625314 GACTGAGGGAGTCCTGGAT 57.375 57.895 9.58 0.00 44.95 3.41
227 228 0.743701 TAGCGACGACTGAGGGAGTC 60.744 60.000 0.00 0.00 46.91 3.36
228 229 0.745128 CTAGCGACGACTGAGGGAGT 60.745 60.000 0.00 0.00 37.76 3.85
229 230 1.440938 CCTAGCGACGACTGAGGGAG 61.441 65.000 0.00 0.00 0.00 4.30
230 231 1.451567 CCTAGCGACGACTGAGGGA 60.452 63.158 0.00 0.00 0.00 4.20
231 232 1.313812 AACCTAGCGACGACTGAGGG 61.314 60.000 0.00 3.21 0.00 4.30
232 233 0.179161 CAACCTAGCGACGACTGAGG 60.179 60.000 0.00 0.93 0.00 3.86
233 234 0.522180 ACAACCTAGCGACGACTGAG 59.478 55.000 0.00 0.00 0.00 3.35
234 235 0.520404 GACAACCTAGCGACGACTGA 59.480 55.000 0.00 0.00 0.00 3.41
235 236 0.522180 AGACAACCTAGCGACGACTG 59.478 55.000 0.00 0.00 0.00 3.51
236 237 2.105006 TAGACAACCTAGCGACGACT 57.895 50.000 0.00 0.00 0.00 4.18
237 238 2.541178 CCATAGACAACCTAGCGACGAC 60.541 54.545 0.00 0.00 0.00 4.34
238 239 1.674441 CCATAGACAACCTAGCGACGA 59.326 52.381 0.00 0.00 0.00 4.20
239 240 1.674441 TCCATAGACAACCTAGCGACG 59.326 52.381 0.00 0.00 0.00 5.12
240 241 3.570550 AGATCCATAGACAACCTAGCGAC 59.429 47.826 0.00 0.00 0.00 5.19
241 242 3.570125 CAGATCCATAGACAACCTAGCGA 59.430 47.826 0.00 0.00 0.00 4.93
242 243 3.305676 CCAGATCCATAGACAACCTAGCG 60.306 52.174 0.00 0.00 0.00 4.26
243 244 3.898123 TCCAGATCCATAGACAACCTAGC 59.102 47.826 0.00 0.00 0.00 3.42
244 245 5.541868 ACATCCAGATCCATAGACAACCTAG 59.458 44.000 0.00 0.00 0.00 3.02
245 246 5.467738 ACATCCAGATCCATAGACAACCTA 58.532 41.667 0.00 0.00 0.00 3.08
246 247 4.302067 ACATCCAGATCCATAGACAACCT 58.698 43.478 0.00 0.00 0.00 3.50
247 248 4.696479 ACATCCAGATCCATAGACAACC 57.304 45.455 0.00 0.00 0.00 3.77
248 249 6.412362 ACTACATCCAGATCCATAGACAAC 57.588 41.667 0.00 0.00 0.00 3.32
249 250 7.437713 AAACTACATCCAGATCCATAGACAA 57.562 36.000 0.00 0.00 0.00 3.18
250 251 7.437713 AAAACTACATCCAGATCCATAGACA 57.562 36.000 0.00 0.00 0.00 3.41
279 280 8.984764 CATGTCAGAACAATGAAATTCACAAAT 58.015 29.630 0.00 0.00 39.30 2.32
280 281 8.196103 TCATGTCAGAACAATGAAATTCACAAA 58.804 29.630 0.00 0.00 39.30 2.83
281 282 7.714703 TCATGTCAGAACAATGAAATTCACAA 58.285 30.769 0.00 0.00 39.30 3.33
282 283 7.274603 TCATGTCAGAACAATGAAATTCACA 57.725 32.000 0.00 0.00 39.30 3.58
283 284 8.752766 AATCATGTCAGAACAATGAAATTCAC 57.247 30.769 0.00 0.00 39.30 3.18
284 285 9.767228 AAAATCATGTCAGAACAATGAAATTCA 57.233 25.926 0.00 0.00 39.30 2.57
309 310 5.354513 TCATGACAGTACAACGGTTCAAAAA 59.645 36.000 0.00 0.00 0.00 1.94
310 311 4.876679 TCATGACAGTACAACGGTTCAAAA 59.123 37.500 0.00 0.00 0.00 2.44
311 312 4.443621 TCATGACAGTACAACGGTTCAAA 58.556 39.130 0.00 0.00 0.00 2.69
312 313 4.061357 TCATGACAGTACAACGGTTCAA 57.939 40.909 0.00 0.00 0.00 2.69
313 314 3.737032 TCATGACAGTACAACGGTTCA 57.263 42.857 0.00 0.00 0.00 3.18
314 315 4.688879 TCAATCATGACAGTACAACGGTTC 59.311 41.667 0.00 0.00 0.00 3.62
315 316 4.637276 TCAATCATGACAGTACAACGGTT 58.363 39.130 0.00 0.00 0.00 4.44
316 317 4.265904 TCAATCATGACAGTACAACGGT 57.734 40.909 0.00 0.00 0.00 4.83
317 318 5.605564 TTTCAATCATGACAGTACAACGG 57.394 39.130 0.00 0.00 34.61 4.44
318 319 7.297391 TCATTTTCAATCATGACAGTACAACG 58.703 34.615 0.00 0.00 34.61 4.10
319 320 9.630098 ATTCATTTTCAATCATGACAGTACAAC 57.370 29.630 0.00 0.00 34.61 3.32
325 326 9.595357 CGATCTATTCATTTTCAATCATGACAG 57.405 33.333 0.00 0.00 34.61 3.51
326 327 9.328845 TCGATCTATTCATTTTCAATCATGACA 57.671 29.630 0.00 0.00 34.61 3.58
420 424 5.041951 TGGTCTTCAACATTAACATTCGC 57.958 39.130 0.00 0.00 0.00 4.70
640 645 1.079405 GAGTCGTCCGCCATTTCCA 60.079 57.895 0.00 0.00 0.00 3.53
1058 1620 2.774809 TCCAATCATACATTGTCCCCGA 59.225 45.455 0.00 0.00 0.00 5.14
1059 1621 3.207265 TCCAATCATACATTGTCCCCG 57.793 47.619 0.00 0.00 0.00 5.73
1131 1693 0.686769 AGGAAGTTCCGGTAGGCGAT 60.687 55.000 16.31 0.00 42.75 4.58
1275 1840 2.540931 ACCGTACACAAACTTAGCAACG 59.459 45.455 0.00 0.00 0.00 4.10
1338 1903 2.639839 TGGGCTTGAGAAGAAACTAGCT 59.360 45.455 0.00 0.00 35.81 3.32
1502 2069 5.964758 ACAGAACAAGCTTCATGTGAAAAA 58.035 33.333 10.96 0.00 33.07 1.94
1508 2075 3.567164 CAGGAACAGAACAAGCTTCATGT 59.433 43.478 0.00 0.00 0.00 3.21
1681 2248 5.401550 CAATGCATTCCAACAAACGAGTAT 58.598 37.500 9.53 0.00 0.00 2.12
2059 2627 6.688073 AGGTGGAGATCTCAGTTTTCTTAA 57.312 37.500 23.85 0.00 0.00 1.85
2514 3082 4.441634 CGGGAATAGACAGGAAAGTACAGG 60.442 50.000 0.00 0.00 0.00 4.00
2950 3518 8.617290 TGTATATAGATTGTAAGAGCGACAGA 57.383 34.615 0.00 0.00 0.00 3.41
4559 5386 2.669434 GCAACATCATGATGCACCAAAC 59.331 45.455 31.17 13.02 44.27 2.93
4749 5581 2.087646 GAACGGAGGGAGTACGTAACT 58.912 52.381 0.00 0.00 42.80 2.24
4750 5582 1.133216 GGAACGGAGGGAGTACGTAAC 59.867 57.143 0.00 0.00 40.31 2.50
4751 5583 1.271871 TGGAACGGAGGGAGTACGTAA 60.272 52.381 0.00 0.00 40.31 3.18
4752 5584 0.327924 TGGAACGGAGGGAGTACGTA 59.672 55.000 0.00 0.00 40.31 3.57
4753 5585 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
4754 5586 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
4755 5587 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
4756 5588 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4757 5589 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4758 5590 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4759 5591 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4760 5592 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4761 5593 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4762 5594 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4763 5595 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
4764 5596 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
4765 5597 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
4766 5598 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
4767 5599 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
4768 5600 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
4769 5601 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
4770 5602 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
4771 5603 6.849588 AACTAAAACCACGACGAGTAATTT 57.150 33.333 0.00 0.34 0.00 1.82
4772 5604 6.849588 AAACTAAAACCACGACGAGTAATT 57.150 33.333 0.00 1.08 0.00 1.40
4773 5605 7.147976 AGTAAACTAAAACCACGACGAGTAAT 58.852 34.615 0.00 0.00 0.00 1.89
4774 5606 6.503524 AGTAAACTAAAACCACGACGAGTAA 58.496 36.000 0.00 0.00 0.00 2.24
4775 5607 6.072112 AGTAAACTAAAACCACGACGAGTA 57.928 37.500 0.00 0.00 0.00 2.59
4776 5608 4.936891 AGTAAACTAAAACCACGACGAGT 58.063 39.130 0.00 0.00 0.00 4.18
4777 5609 5.107722 GGAAGTAAACTAAAACCACGACGAG 60.108 44.000 0.00 0.00 0.00 4.18
4778 5610 4.744631 GGAAGTAAACTAAAACCACGACGA 59.255 41.667 0.00 0.00 0.00 4.20
4779 5611 4.746611 AGGAAGTAAACTAAAACCACGACG 59.253 41.667 0.00 0.00 0.00 5.12
4780 5612 6.562825 CGAAGGAAGTAAACTAAAACCACGAC 60.563 42.308 0.00 0.00 0.00 4.34
4781 5613 5.463061 CGAAGGAAGTAAACTAAAACCACGA 59.537 40.000 0.00 0.00 0.00 4.35
4782 5614 5.673029 CGAAGGAAGTAAACTAAAACCACG 58.327 41.667 0.00 0.00 0.00 4.94
4874 5706 8.898761 TGAGACTTAGCAAAACTGTTTATGAAA 58.101 29.630 6.16 5.35 0.00 2.69
4996 5830 4.320129 CGGTCAAGTGACATAACATGCAAA 60.320 41.667 13.21 0.00 46.47 3.68
5091 5927 1.523154 TTAAGGCACCAAAGCGCAGG 61.523 55.000 11.47 11.43 34.64 4.85
5162 6313 1.603739 GCCTTTGGGTCCCTGACAC 60.604 63.158 10.00 0.00 36.36 3.67
5187 6358 1.202110 CGCAGCTTCAGTGCCATAAAG 60.202 52.381 0.00 0.00 37.67 1.85
5188 6359 0.804364 CGCAGCTTCAGTGCCATAAA 59.196 50.000 0.00 0.00 37.67 1.40
5189 6360 0.321564 ACGCAGCTTCAGTGCCATAA 60.322 50.000 0.00 0.00 37.67 1.90
5190 6361 0.740868 GACGCAGCTTCAGTGCCATA 60.741 55.000 0.00 0.00 37.67 2.74
5191 6362 2.033141 ACGCAGCTTCAGTGCCAT 59.967 55.556 0.00 0.00 37.67 4.40
5192 6363 2.666190 GACGCAGCTTCAGTGCCA 60.666 61.111 0.00 0.00 37.67 4.92
5193 6364 3.782244 CGACGCAGCTTCAGTGCC 61.782 66.667 0.00 0.00 37.67 5.01
5194 6365 4.436448 GCGACGCAGCTTCAGTGC 62.436 66.667 16.42 0.00 37.58 4.40
5195 6366 3.037833 TGCGACGCAGCTTCAGTG 61.038 61.111 20.50 0.00 38.13 3.66
5196 6367 3.038417 GTGCGACGCAGCTTCAGT 61.038 61.111 25.21 0.00 40.08 3.41
5203 6374 4.156622 CATGCAGGTGCGACGCAG 62.157 66.667 25.21 13.22 45.83 5.18
5206 6377 2.923426 ATACCCATGCAGGTGCGACG 62.923 60.000 7.87 0.00 45.83 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.