Multiple sequence alignment - TraesCS3B01G345100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G345100 chr3B 100.000 7829 0 0 1 7829 554985601 554993429 0.000000e+00 14458.0
1 TraesCS3B01G345100 chr3B 82.857 700 87 22 7082 7761 780261564 780262250 1.450000e-166 597.0
2 TraesCS3B01G345100 chr3D 96.045 3489 81 20 3593 7076 424890321 424893757 0.000000e+00 5626.0
3 TraesCS3B01G345100 chr3D 93.939 3267 138 31 1 3222 424886521 424889772 0.000000e+00 4881.0
4 TraesCS3B01G345100 chr3D 98.131 214 4 0 3381 3594 424889769 424889982 2.670000e-99 374.0
5 TraesCS3B01G345100 chr3A 91.952 3355 189 45 803 4104 563835973 563832647 0.000000e+00 4625.0
6 TraesCS3B01G345100 chr3A 93.095 2737 91 23 4142 6840 563832654 563829978 0.000000e+00 3917.0
7 TraesCS3B01G345100 chr3A 94.958 238 10 2 6839 7076 563829895 563829660 9.590000e-99 372.0
8 TraesCS3B01G345100 chr7B 84.783 736 82 25 7077 7798 52507390 52508109 0.000000e+00 712.0
9 TraesCS3B01G345100 chr7B 82.695 705 87 28 7070 7761 189712369 189711687 1.880000e-165 593.0
10 TraesCS3B01G345100 chr7B 90.802 424 32 6 2634 3053 10282350 10282770 1.910000e-155 560.0
11 TraesCS3B01G345100 chr7B 78.680 591 71 23 7252 7829 549457939 549457391 7.520000e-90 342.0
12 TraesCS3B01G345100 chr7B 91.429 105 8 1 2054 2157 10282244 10282348 8.190000e-30 143.0
13 TraesCS3B01G345100 chr2B 83.880 732 87 26 7077 7799 205531669 205532378 0.000000e+00 669.0
14 TraesCS3B01G345100 chr2B 78.880 393 51 19 7455 7829 165113764 165114142 3.650000e-58 237.0
15 TraesCS3B01G345100 chr2B 84.058 207 20 7 1012 1207 478101604 478101808 3.730000e-43 187.0
16 TraesCS3B01G345100 chr2B 89.815 108 8 2 7722 7829 104825191 104825087 1.370000e-27 135.0
17 TraesCS3B01G345100 chr2B 90.526 95 9 0 5150 5244 466212987 466213081 8.250000e-25 126.0
18 TraesCS3B01G345100 chr5B 84.483 696 77 25 7110 7798 148883659 148882988 0.000000e+00 658.0
19 TraesCS3B01G345100 chr5B 82.690 699 102 17 7073 7761 324567056 324567745 3.130000e-168 603.0
20 TraesCS3B01G345100 chr4B 82.900 731 92 28 7077 7798 527964746 527964040 1.850000e-175 627.0
21 TraesCS3B01G345100 chr4B 90.526 95 9 0 5150 5244 16044753 16044847 8.250000e-25 126.0
22 TraesCS3B01G345100 chr6B 83.333 696 82 23 7077 7758 500195870 500195195 5.190000e-171 612.0
23 TraesCS3B01G345100 chr4A 91.686 421 27 6 2635 3053 714405224 714404810 1.890000e-160 577.0
24 TraesCS3B01G345100 chr4A 91.935 62 5 0 2053 2114 714405358 714405297 3.890000e-13 87.9
25 TraesCS3B01G345100 chrUn 81.662 698 103 18 7077 7760 75668024 75667338 2.470000e-154 556.0
26 TraesCS3B01G345100 chr1A 92.096 291 14 8 2633 2918 27397477 27397191 1.220000e-107 401.0
27 TraesCS3B01G345100 chr1A 93.043 115 6 2 2053 2165 27397582 27397468 4.860000e-37 167.0
28 TraesCS3B01G345100 chr7D 83.138 427 28 14 2633 3053 568199652 568200040 4.500000e-92 350.0
29 TraesCS3B01G345100 chr7D 96.330 109 4 0 2052 2160 568199546 568199654 6.240000e-41 180.0
30 TraesCS3B01G345100 chr2D 93.878 98 6 0 5149 5246 642818488 642818585 1.760000e-31 148.0
31 TraesCS3B01G345100 chr5D 93.939 99 3 2 5149 5246 558147159 558147063 6.330000e-31 147.0
32 TraesCS3B01G345100 chr7A 91.919 99 5 1 5149 5244 696847287 696847189 1.370000e-27 135.0
33 TraesCS3B01G345100 chr2A 89.899 99 7 1 5149 5244 705937657 705937755 2.970000e-24 124.0
34 TraesCS3B01G345100 chr6D 88.889 63 4 3 1033 1092 277023446 277023384 3.030000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G345100 chr3B 554985601 554993429 7828 False 14458.000000 14458 100.000000 1 7829 1 chr3B.!!$F1 7828
1 TraesCS3B01G345100 chr3B 780261564 780262250 686 False 597.000000 597 82.857000 7082 7761 1 chr3B.!!$F2 679
2 TraesCS3B01G345100 chr3D 424886521 424893757 7236 False 3627.000000 5626 96.038333 1 7076 3 chr3D.!!$F1 7075
3 TraesCS3B01G345100 chr3A 563829660 563835973 6313 True 2971.333333 4625 93.335000 803 7076 3 chr3A.!!$R1 6273
4 TraesCS3B01G345100 chr7B 52507390 52508109 719 False 712.000000 712 84.783000 7077 7798 1 chr7B.!!$F1 721
5 TraesCS3B01G345100 chr7B 189711687 189712369 682 True 593.000000 593 82.695000 7070 7761 1 chr7B.!!$R1 691
6 TraesCS3B01G345100 chr7B 10282244 10282770 526 False 351.500000 560 91.115500 2054 3053 2 chr7B.!!$F2 999
7 TraesCS3B01G345100 chr7B 549457391 549457939 548 True 342.000000 342 78.680000 7252 7829 1 chr7B.!!$R2 577
8 TraesCS3B01G345100 chr2B 205531669 205532378 709 False 669.000000 669 83.880000 7077 7799 1 chr2B.!!$F2 722
9 TraesCS3B01G345100 chr5B 148882988 148883659 671 True 658.000000 658 84.483000 7110 7798 1 chr5B.!!$R1 688
10 TraesCS3B01G345100 chr5B 324567056 324567745 689 False 603.000000 603 82.690000 7073 7761 1 chr5B.!!$F1 688
11 TraesCS3B01G345100 chr4B 527964040 527964746 706 True 627.000000 627 82.900000 7077 7798 1 chr4B.!!$R1 721
12 TraesCS3B01G345100 chr6B 500195195 500195870 675 True 612.000000 612 83.333000 7077 7758 1 chr6B.!!$R1 681
13 TraesCS3B01G345100 chr4A 714404810 714405358 548 True 332.450000 577 91.810500 2053 3053 2 chr4A.!!$R1 1000
14 TraesCS3B01G345100 chrUn 75667338 75668024 686 True 556.000000 556 81.662000 7077 7760 1 chrUn.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.397675 TGGATTTGCACCCACAACCA 60.398 50.000 0.00 0.00 0.00 3.67 F
667 675 0.882927 CCAGACAAGGTTTTCGCCGA 60.883 55.000 0.00 0.00 0.00 5.54 F
1547 1600 0.257039 CTAGTGGAGCTGGGCCAAAT 59.743 55.000 8.04 0.00 37.12 2.32 F
1549 1602 0.901580 AGTGGAGCTGGGCCAAATTG 60.902 55.000 8.04 0.00 37.12 2.32 F
1554 1607 2.102578 GAGCTGGGCCAAATTGTGTAT 58.897 47.619 8.04 0.00 0.00 2.29 F
2734 2836 2.168521 TCAGAACAAGCCTCTTATCCCG 59.831 50.000 0.00 0.00 0.00 5.14 F
3143 3251 2.974041 TACCTTTTCGGCCCCGCAT 61.974 57.895 0.00 0.00 39.59 4.73 F
4188 4808 1.467734 GTGACAGCAGCTGGATTTGAG 59.532 52.381 26.38 0.00 35.51 3.02 F
4836 5492 2.191400 CCTCCAGGAGATTCAGGTCAA 58.809 52.381 19.21 0.00 37.39 3.18 F
6404 7062 0.107993 ATGGAGTCGTGCATGGACTG 60.108 55.000 23.13 9.07 44.41 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1158 2.159142 ACTTAACTAATCGCTGGACGGG 60.159 50.000 0.00 0.00 43.89 5.28 R
2208 2303 0.639943 TAGCCCCTGGACATCCTGTA 59.360 55.000 0.00 0.00 36.82 2.74 R
3015 3123 0.036671 CTCTGCATGTCAGGAGTGCA 60.037 55.000 14.50 8.44 45.69 4.57 R
3255 3531 3.433306 ACGTCATCAAAAAGGATGGGA 57.567 42.857 3.59 0.00 43.82 4.37 R
3354 3630 3.500448 TGGGAAATGCACAAGTAGACA 57.500 42.857 0.00 0.00 0.00 3.41 R
4188 4808 5.399858 TCGACTAATGTCACTCTTGTAAGC 58.600 41.667 0.00 0.00 43.06 3.09 R
4577 5204 7.174107 ACCAAGTTCTAACCTAAATACGCTA 57.826 36.000 0.00 0.00 0.00 4.26 R
5324 5982 0.813821 GAGCCAAAATCAGGACCTGC 59.186 55.000 17.33 2.93 0.00 4.85 R
6409 7067 1.136500 GTCAGTCGGTTAGGATCCACC 59.864 57.143 15.82 12.88 39.35 4.61 R
7685 8471 0.807496 GCCTCTCGCAGAAGCAAAAT 59.193 50.000 2.95 0.00 42.27 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.193248 GTAGCCATCCCCACTGCC 59.807 66.667 0.00 0.00 0.00 4.85
33 34 1.152963 GCCCGCATCTTACCCACAT 60.153 57.895 0.00 0.00 0.00 3.21
45 46 5.801380 TCTTACCCACATGAGAAGGTAAAC 58.199 41.667 15.96 0.00 42.66 2.01
79 80 3.321396 TGTTCAACACGGTATAGTGGACA 59.679 43.478 2.14 0.00 45.80 4.02
106 107 0.397675 TGGATTTGCACCCACAACCA 60.398 50.000 0.00 0.00 0.00 3.67
112 113 0.894141 TGCACCCACAACCAATATGC 59.106 50.000 0.00 0.00 0.00 3.14
148 149 0.994247 AGGTGACTGCATGGATCCAA 59.006 50.000 20.67 0.60 41.13 3.53
175 176 5.387113 AGGGTGCATTTATAACTCCATCA 57.613 39.130 0.00 0.00 0.00 3.07
176 177 5.380043 AGGGTGCATTTATAACTCCATCAG 58.620 41.667 0.00 0.00 0.00 2.90
222 223 1.127951 GTAGAACAAACATGTCGCCCG 59.872 52.381 0.00 0.00 0.00 6.13
227 228 1.743995 AAACATGTCGCCCGCTACC 60.744 57.895 0.00 0.00 0.00 3.18
235 236 2.125106 GCCCGCTACCACCTTGAG 60.125 66.667 0.00 0.00 0.00 3.02
242 243 1.337823 GCTACCACCTTGAGCGAGAAA 60.338 52.381 0.00 0.00 0.00 2.52
295 296 7.410800 TCGTGTTACATAACGAATTCAAGTT 57.589 32.000 6.22 5.20 45.14 2.66
301 302 9.440784 GTTACATAACGAATTCAAGTTGAACAA 57.559 29.630 20.26 0.00 39.45 2.83
321 322 8.462811 TGAACAACTTCACTTTATGCACTTTTA 58.537 29.630 0.00 0.00 31.00 1.52
322 323 8.628882 AACAACTTCACTTTATGCACTTTTAC 57.371 30.769 0.00 0.00 0.00 2.01
333 334 1.402325 GCACTTTTACAACCGCCATCC 60.402 52.381 0.00 0.00 0.00 3.51
337 338 1.374560 TTTACAACCGCCATCCATCG 58.625 50.000 0.00 0.00 0.00 3.84
399 400 3.247173 GGAAACATCATCGATCTCACTGC 59.753 47.826 0.00 0.00 0.00 4.40
400 401 2.522836 ACATCATCGATCTCACTGCC 57.477 50.000 0.00 0.00 0.00 4.85
416 417 4.019411 TCACTGCCCTTCATGTTGAGATTA 60.019 41.667 0.00 0.00 0.00 1.75
421 422 5.357878 TGCCCTTCATGTTGAGATTATTCAC 59.642 40.000 0.00 0.00 0.00 3.18
422 423 5.221126 GCCCTTCATGTTGAGATTATTCACC 60.221 44.000 0.00 0.00 0.00 4.02
473 475 3.181445 ACCCTTTATCCATATTGCTCGCA 60.181 43.478 0.00 0.00 0.00 5.10
474 476 3.189287 CCCTTTATCCATATTGCTCGCAC 59.811 47.826 0.00 0.00 0.00 5.34
487 489 1.904144 CTCGCACCGAAGACGAATTA 58.096 50.000 0.00 0.00 42.66 1.40
501 503 3.214328 ACGAATTATCCATGGTGCCTTC 58.786 45.455 12.58 10.12 0.00 3.46
519 521 4.807643 GCCTTCAGACCAACCAGTCTAATT 60.808 45.833 0.00 0.00 45.38 1.40
543 545 3.832527 CCCCAAACCCTATATCACCTTG 58.167 50.000 0.00 0.00 0.00 3.61
544 546 3.436470 CCCCAAACCCTATATCACCTTGG 60.436 52.174 0.00 0.00 33.20 3.61
584 586 2.544844 TGGATAGAGTCGTCCCCTTT 57.455 50.000 13.11 0.00 33.45 3.11
585 587 2.385803 TGGATAGAGTCGTCCCCTTTC 58.614 52.381 13.11 0.00 33.45 2.62
586 588 1.337387 GGATAGAGTCGTCCCCTTTCG 59.663 57.143 6.39 0.00 0.00 3.46
620 624 3.075005 GGTAGAGGAGGGCGTGCA 61.075 66.667 0.66 0.00 0.00 4.57
622 626 1.068250 GTAGAGGAGGGCGTGCATC 59.932 63.158 0.66 0.00 0.00 3.91
630 634 2.263077 GAGGGCGTGCATCGATATAAG 58.737 52.381 11.94 0.00 42.86 1.73
650 658 4.487714 AGACCAATAAGAAATCTCGCCA 57.512 40.909 0.00 0.00 0.00 5.69
653 661 4.192317 ACCAATAAGAAATCTCGCCAGAC 58.808 43.478 0.00 0.00 0.00 3.51
657 665 2.393271 AGAAATCTCGCCAGACAAGG 57.607 50.000 0.00 0.00 0.00 3.61
664 672 1.082104 CGCCAGACAAGGTTTTCGC 60.082 57.895 0.00 0.00 0.00 4.70
667 675 0.882927 CCAGACAAGGTTTTCGCCGA 60.883 55.000 0.00 0.00 0.00 5.54
681 689 3.795623 TCGCCGATAGAGCTTTAAACT 57.204 42.857 0.00 0.00 39.76 2.66
786 816 4.938226 ACAAGGCTTGAGCATAGTTTCTAC 59.062 41.667 32.50 0.00 44.36 2.59
787 817 4.826274 AGGCTTGAGCATAGTTTCTACA 57.174 40.909 5.24 0.00 44.36 2.74
788 818 4.764172 AGGCTTGAGCATAGTTTCTACAG 58.236 43.478 5.24 0.00 44.36 2.74
790 820 5.422331 AGGCTTGAGCATAGTTTCTACAGTA 59.578 40.000 5.24 0.00 44.36 2.74
791 821 5.751028 GGCTTGAGCATAGTTTCTACAGTAG 59.249 44.000 5.24 0.47 44.36 2.57
795 825 9.209175 CTTGAGCATAGTTTCTACAGTAGTTTT 57.791 33.333 7.50 0.00 0.00 2.43
796 826 9.555727 TTGAGCATAGTTTCTACAGTAGTTTTT 57.444 29.630 7.50 0.00 0.00 1.94
841 878 3.129988 ACTCTCTACCGTTCCAAATACCG 59.870 47.826 0.00 0.00 0.00 4.02
872 909 2.016961 CCCACGATCAATCTTGCCG 58.983 57.895 0.00 0.00 0.00 5.69
983 1021 2.455565 CGCCTCAATCCCATCCCCT 61.456 63.158 0.00 0.00 0.00 4.79
1137 1176 0.899720 TTCCCGTCCAGCGATTAGTT 59.100 50.000 0.00 0.00 44.77 2.24
1157 1196 1.507140 AAGTCCCACTGACCTTCACA 58.493 50.000 0.00 0.00 45.68 3.58
1159 1198 1.141053 AGTCCCACTGACCTTCACAAC 59.859 52.381 0.00 0.00 45.68 3.32
1167 1206 1.239347 GACCTTCACAACTTCTGGCC 58.761 55.000 0.00 0.00 0.00 5.36
1286 1325 1.335810 CCGCTGCCTCTACGTATTACA 59.664 52.381 0.00 0.00 0.00 2.41
1309 1348 2.049248 TTTGGTCCCGACGTACGC 60.049 61.111 16.72 7.41 41.07 4.42
1326 1365 1.146358 CGCGATTTCTTCCCGTCCTC 61.146 60.000 0.00 0.00 0.00 3.71
1339 1378 2.763448 CCCGTCCTCTTCTCTTCTTCAT 59.237 50.000 0.00 0.00 0.00 2.57
1340 1379 3.196685 CCCGTCCTCTTCTCTTCTTCATT 59.803 47.826 0.00 0.00 0.00 2.57
1341 1380 4.429108 CCGTCCTCTTCTCTTCTTCATTC 58.571 47.826 0.00 0.00 0.00 2.67
1342 1381 4.081972 CCGTCCTCTTCTCTTCTTCATTCA 60.082 45.833 0.00 0.00 0.00 2.57
1393 1439 2.037772 CACCTGGAGCTGTGTTAGTCTT 59.962 50.000 0.00 0.00 0.00 3.01
1547 1600 0.257039 CTAGTGGAGCTGGGCCAAAT 59.743 55.000 8.04 0.00 37.12 2.32
1549 1602 0.901580 AGTGGAGCTGGGCCAAATTG 60.902 55.000 8.04 0.00 37.12 2.32
1554 1607 2.102578 GAGCTGGGCCAAATTGTGTAT 58.897 47.619 8.04 0.00 0.00 2.29
1733 1798 8.746052 TTCTTCTGTCAAATAAAAGGAAGTCA 57.254 30.769 0.00 0.00 33.00 3.41
1736 1801 6.601332 TCTGTCAAATAAAAGGAAGTCACCT 58.399 36.000 0.00 0.00 42.69 4.00
1754 1819 2.169352 ACCTCACCTGGAATTCGATGAG 59.831 50.000 11.92 11.92 34.62 2.90
1758 1823 4.023980 TCACCTGGAATTCGATGAGTACT 58.976 43.478 0.00 0.00 0.00 2.73
1760 1825 5.833667 TCACCTGGAATTCGATGAGTACTAT 59.166 40.000 0.00 0.00 0.00 2.12
1995 2062 7.751732 TGTGCTGCTTACTTTACTGATTAATG 58.248 34.615 0.00 0.00 0.00 1.90
2049 2116 8.367660 TCTTACAGAACTAATCCTTGTCTCAT 57.632 34.615 0.00 0.00 0.00 2.90
2050 2117 9.475620 TCTTACAGAACTAATCCTTGTCTCATA 57.524 33.333 0.00 0.00 0.00 2.15
2101 2169 8.721133 AAACCTGATGTTATTTTTAAGGAGGT 57.279 30.769 0.00 0.00 35.67 3.85
2150 2245 5.567423 GCAGGTCCTTTCATAGCAAAAACAT 60.567 40.000 0.00 0.00 0.00 2.71
2164 2259 5.761234 AGCAAAAACATGATGCAAATTGACT 59.239 32.000 0.00 0.00 42.45 3.41
2169 2264 5.571784 ACATGATGCAAATTGACTACTGG 57.428 39.130 0.00 0.00 0.00 4.00
2208 2303 7.363880 TGTTGTAACACACCATTTGGTTGTAAT 60.364 33.333 13.98 6.37 39.28 1.89
2326 2421 8.099364 TCTTACTTTGTGGAGAACATGATTTC 57.901 34.615 0.00 0.00 38.99 2.17
2359 2455 7.388776 TCTTTCCACTGTTTCAGTCATTATCAG 59.611 37.037 0.00 0.00 43.43 2.90
2587 2688 3.485877 GGCAACTCGTCATGACAATAAGC 60.486 47.826 24.93 20.22 0.00 3.09
2608 2709 4.091424 GCGAATTATAGATGCCGATTTGC 58.909 43.478 0.00 0.00 32.02 3.68
2653 2754 3.802948 ATGTGGACTTCCGTGAGTATC 57.197 47.619 0.00 0.00 39.43 2.24
2734 2836 2.168521 TCAGAACAAGCCTCTTATCCCG 59.831 50.000 0.00 0.00 0.00 5.14
3015 3123 4.831155 CCAGATGAAAGGCATACCATTGAT 59.169 41.667 0.00 0.00 37.34 2.57
3081 3189 9.037737 CAAACATCAAACCAATCATATGAATCC 57.962 33.333 9.99 0.00 0.00 3.01
3143 3251 2.974041 TACCTTTTCGGCCCCGCAT 61.974 57.895 0.00 0.00 39.59 4.73
3203 3318 4.458295 AGGCACTGAAAAGATCTGATGTTG 59.542 41.667 0.00 0.00 37.18 3.33
3222 3498 9.699410 TGATGTTGGATTTATGGTTAAGATTCT 57.301 29.630 0.00 0.00 0.00 2.40
3235 3511 9.620259 ATGGTTAAGATTCTAGTTTGGAAGATC 57.380 33.333 0.00 0.00 0.00 2.75
3236 3512 8.602424 TGGTTAAGATTCTAGTTTGGAAGATCA 58.398 33.333 0.00 0.00 0.00 2.92
3237 3513 8.884726 GGTTAAGATTCTAGTTTGGAAGATCAC 58.115 37.037 0.00 0.00 0.00 3.06
3238 3514 9.436957 GTTAAGATTCTAGTTTGGAAGATCACA 57.563 33.333 0.00 0.00 0.00 3.58
3240 3516 8.503458 AAGATTCTAGTTTGGAAGATCACATG 57.497 34.615 0.00 0.00 0.00 3.21
3241 3517 7.052873 AGATTCTAGTTTGGAAGATCACATGG 58.947 38.462 0.00 0.00 0.00 3.66
3242 3518 5.762179 TCTAGTTTGGAAGATCACATGGT 57.238 39.130 0.00 0.00 0.00 3.55
3243 3519 6.126863 TCTAGTTTGGAAGATCACATGGTT 57.873 37.500 0.00 0.00 0.00 3.67
3244 3520 6.173339 TCTAGTTTGGAAGATCACATGGTTC 58.827 40.000 0.00 0.00 0.00 3.62
3245 3521 4.728772 AGTTTGGAAGATCACATGGTTCA 58.271 39.130 0.00 0.00 0.00 3.18
3246 3522 5.327732 AGTTTGGAAGATCACATGGTTCAT 58.672 37.500 0.00 0.00 0.00 2.57
3247 3523 5.776716 AGTTTGGAAGATCACATGGTTCATT 59.223 36.000 0.00 0.00 0.00 2.57
3248 3524 6.268387 AGTTTGGAAGATCACATGGTTCATTT 59.732 34.615 0.00 0.00 0.00 2.32
3249 3525 5.648178 TGGAAGATCACATGGTTCATTTG 57.352 39.130 0.00 0.00 0.00 2.32
3250 3526 5.323581 TGGAAGATCACATGGTTCATTTGA 58.676 37.500 0.00 0.15 35.47 2.69
3251 3527 5.183713 TGGAAGATCACATGGTTCATTTGAC 59.816 40.000 0.00 0.00 34.13 3.18
3252 3528 5.416952 GGAAGATCACATGGTTCATTTGACT 59.583 40.000 0.00 0.00 34.13 3.41
3253 3529 6.599244 GGAAGATCACATGGTTCATTTGACTA 59.401 38.462 0.00 0.00 34.13 2.59
3254 3530 7.284034 GGAAGATCACATGGTTCATTTGACTAT 59.716 37.037 0.00 0.00 34.13 2.12
3255 3531 8.585471 AAGATCACATGGTTCATTTGACTATT 57.415 30.769 0.00 0.00 34.13 1.73
3256 3532 8.218338 AGATCACATGGTTCATTTGACTATTC 57.782 34.615 0.00 0.00 34.13 1.75
3257 3533 6.757897 TCACATGGTTCATTTGACTATTCC 57.242 37.500 0.00 0.00 27.46 3.01
3258 3534 5.652014 TCACATGGTTCATTTGACTATTCCC 59.348 40.000 0.00 0.00 27.46 3.97
3259 3535 5.418524 CACATGGTTCATTTGACTATTCCCA 59.581 40.000 0.00 0.00 0.00 4.37
3260 3536 6.097270 CACATGGTTCATTTGACTATTCCCAT 59.903 38.462 0.00 0.00 0.00 4.00
3261 3537 6.322201 ACATGGTTCATTTGACTATTCCCATC 59.678 38.462 0.00 0.00 0.00 3.51
3262 3538 5.200483 TGGTTCATTTGACTATTCCCATCC 58.800 41.667 0.00 0.00 0.00 3.51
3263 3539 5.044179 TGGTTCATTTGACTATTCCCATCCT 60.044 40.000 0.00 0.00 0.00 3.24
3264 3540 5.893824 GGTTCATTTGACTATTCCCATCCTT 59.106 40.000 0.00 0.00 0.00 3.36
3265 3541 6.381133 GGTTCATTTGACTATTCCCATCCTTT 59.619 38.462 0.00 0.00 0.00 3.11
3266 3542 7.093333 GGTTCATTTGACTATTCCCATCCTTTT 60.093 37.037 0.00 0.00 0.00 2.27
3267 3543 8.314021 GTTCATTTGACTATTCCCATCCTTTTT 58.686 33.333 0.00 0.00 0.00 1.94
3268 3544 7.839907 TCATTTGACTATTCCCATCCTTTTTG 58.160 34.615 0.00 0.00 0.00 2.44
3269 3545 7.673504 TCATTTGACTATTCCCATCCTTTTTGA 59.326 33.333 0.00 0.00 0.00 2.69
3270 3546 8.480501 CATTTGACTATTCCCATCCTTTTTGAT 58.519 33.333 0.00 0.00 0.00 2.57
3271 3547 7.408756 TTGACTATTCCCATCCTTTTTGATG 57.591 36.000 0.00 0.00 41.47 3.07
3272 3548 6.730447 TGACTATTCCCATCCTTTTTGATGA 58.270 36.000 2.70 0.00 43.94 2.92
3273 3549 6.603201 TGACTATTCCCATCCTTTTTGATGAC 59.397 38.462 2.70 0.00 43.94 3.06
3274 3550 4.989279 ATTCCCATCCTTTTTGATGACG 57.011 40.909 2.70 0.00 43.94 4.35
3275 3551 3.433306 TCCCATCCTTTTTGATGACGT 57.567 42.857 2.70 0.00 43.94 4.34
3276 3552 3.761897 TCCCATCCTTTTTGATGACGTT 58.238 40.909 2.70 0.00 43.94 3.99
3277 3553 4.148838 TCCCATCCTTTTTGATGACGTTT 58.851 39.130 2.70 0.00 43.94 3.60
3278 3554 5.317808 TCCCATCCTTTTTGATGACGTTTA 58.682 37.500 2.70 0.00 43.94 2.01
3279 3555 5.949354 TCCCATCCTTTTTGATGACGTTTAT 59.051 36.000 2.70 0.00 43.94 1.40
3280 3556 6.435904 TCCCATCCTTTTTGATGACGTTTATT 59.564 34.615 2.70 0.00 43.94 1.40
3281 3557 7.039363 TCCCATCCTTTTTGATGACGTTTATTT 60.039 33.333 2.70 0.00 43.94 1.40
3282 3558 7.275560 CCCATCCTTTTTGATGACGTTTATTTC 59.724 37.037 2.70 0.00 43.94 2.17
3283 3559 7.275560 CCATCCTTTTTGATGACGTTTATTTCC 59.724 37.037 2.70 0.00 43.94 3.13
3284 3560 7.519032 TCCTTTTTGATGACGTTTATTTCCT 57.481 32.000 0.00 0.00 0.00 3.36
3285 3561 8.624367 TCCTTTTTGATGACGTTTATTTCCTA 57.376 30.769 0.00 0.00 0.00 2.94
3286 3562 8.508875 TCCTTTTTGATGACGTTTATTTCCTAC 58.491 33.333 0.00 0.00 0.00 3.18
3287 3563 8.293867 CCTTTTTGATGACGTTTATTTCCTACA 58.706 33.333 0.00 0.00 0.00 2.74
3288 3564 9.672086 CTTTTTGATGACGTTTATTTCCTACAA 57.328 29.630 0.00 0.00 0.00 2.41
3293 3569 9.619316 TGATGACGTTTATTTCCTACAAAAATG 57.381 29.630 0.00 0.00 0.00 2.32
3294 3570 7.861176 TGACGTTTATTTCCTACAAAAATGC 57.139 32.000 0.00 0.00 0.00 3.56
3295 3571 6.864165 TGACGTTTATTTCCTACAAAAATGCC 59.136 34.615 0.00 0.00 0.00 4.40
3296 3572 6.750148 ACGTTTATTTCCTACAAAAATGCCA 58.250 32.000 0.00 0.00 0.00 4.92
3297 3573 7.382898 ACGTTTATTTCCTACAAAAATGCCAT 58.617 30.769 0.00 0.00 0.00 4.40
3298 3574 7.875554 ACGTTTATTTCCTACAAAAATGCCATT 59.124 29.630 0.00 0.00 0.00 3.16
3299 3575 8.716909 CGTTTATTTCCTACAAAAATGCCATTT 58.283 29.630 0.00 0.00 0.00 2.32
3304 3580 9.791801 ATTTCCTACAAAAATGCCATTTTAACT 57.208 25.926 15.33 4.43 41.30 2.24
3305 3581 9.620259 TTTCCTACAAAAATGCCATTTTAACTT 57.380 25.926 15.33 0.00 41.30 2.66
3306 3582 8.600449 TCCTACAAAAATGCCATTTTAACTTG 57.400 30.769 15.33 12.09 41.30 3.16
3307 3583 7.172361 TCCTACAAAAATGCCATTTTAACTTGC 59.828 33.333 15.33 0.00 41.30 4.01
3308 3584 6.690194 ACAAAAATGCCATTTTAACTTGCA 57.310 29.167 15.33 0.00 41.30 4.08
3309 3585 7.093322 ACAAAAATGCCATTTTAACTTGCAA 57.907 28.000 15.33 0.00 41.30 4.08
3310 3586 7.714703 ACAAAAATGCCATTTTAACTTGCAAT 58.285 26.923 15.33 0.00 41.30 3.56
3311 3587 8.844244 ACAAAAATGCCATTTTAACTTGCAATA 58.156 25.926 15.33 0.00 41.30 1.90
3312 3588 9.843334 CAAAAATGCCATTTTAACTTGCAATAT 57.157 25.926 15.33 0.00 41.30 1.28
3313 3589 9.843334 AAAAATGCCATTTTAACTTGCAATATG 57.157 25.926 15.33 0.00 41.30 1.78
3314 3590 8.789825 AAATGCCATTTTAACTTGCAATATGA 57.210 26.923 0.00 0.00 35.30 2.15
3315 3591 8.789825 AATGCCATTTTAACTTGCAATATGAA 57.210 26.923 0.00 0.00 35.30 2.57
3316 3592 7.593875 TGCCATTTTAACTTGCAATATGAAC 57.406 32.000 0.00 0.00 0.00 3.18
3317 3593 7.157347 TGCCATTTTAACTTGCAATATGAACA 58.843 30.769 0.00 0.00 0.00 3.18
3318 3594 7.331440 TGCCATTTTAACTTGCAATATGAACAG 59.669 33.333 0.00 0.00 0.00 3.16
3319 3595 7.331687 GCCATTTTAACTTGCAATATGAACAGT 59.668 33.333 0.00 0.00 0.00 3.55
3320 3596 9.206870 CCATTTTAACTTGCAATATGAACAGTT 57.793 29.630 0.00 0.00 0.00 3.16
3322 3598 9.762933 ATTTTAACTTGCAATATGAACAGTTGT 57.237 25.926 0.00 0.00 0.00 3.32
3323 3599 9.593134 TTTTAACTTGCAATATGAACAGTTGTT 57.407 25.926 0.00 0.00 41.64 2.83
3325 3601 9.672086 TTAACTTGCAATATGAACAGTTGTTAC 57.328 29.630 0.00 0.00 38.56 2.50
3326 3602 7.270757 ACTTGCAATATGAACAGTTGTTACA 57.729 32.000 0.00 0.00 38.56 2.41
3327 3603 7.885297 ACTTGCAATATGAACAGTTGTTACAT 58.115 30.769 0.00 6.39 38.56 2.29
3328 3604 8.359642 ACTTGCAATATGAACAGTTGTTACATT 58.640 29.630 0.00 4.75 38.56 2.71
3329 3605 9.195411 CTTGCAATATGAACAGTTGTTACATTT 57.805 29.630 0.00 5.55 38.56 2.32
3330 3606 9.539825 TTGCAATATGAACAGTTGTTACATTTT 57.460 25.926 0.00 9.35 38.56 1.82
3331 3607 9.190858 TGCAATATGAACAGTTGTTACATTTTC 57.809 29.630 12.04 0.00 38.56 2.29
3332 3608 9.190858 GCAATATGAACAGTTGTTACATTTTCA 57.809 29.630 12.04 0.00 38.56 2.69
3337 3613 9.985730 ATGAACAGTTGTTACATTTTCATGAAT 57.014 25.926 9.40 0.00 38.56 2.57
3341 3617 9.677567 ACAGTTGTTACATTTTCATGAATACAC 57.322 29.630 9.40 1.94 34.11 2.90
3342 3618 9.897744 CAGTTGTTACATTTTCATGAATACACT 57.102 29.630 9.40 0.00 34.11 3.55
3343 3619 9.897744 AGTTGTTACATTTTCATGAATACACTG 57.102 29.630 9.40 2.94 34.11 3.66
3344 3620 9.677567 GTTGTTACATTTTCATGAATACACTGT 57.322 29.630 9.40 8.62 34.11 3.55
3355 3631 9.729023 TTCATGAATACACTGTTTTTACTGTTG 57.271 29.630 3.38 0.00 0.00 3.33
3356 3632 8.898761 TCATGAATACACTGTTTTTACTGTTGT 58.101 29.630 0.00 0.00 0.00 3.32
3357 3633 9.169468 CATGAATACACTGTTTTTACTGTTGTC 57.831 33.333 0.00 0.00 0.00 3.18
3358 3634 8.500753 TGAATACACTGTTTTTACTGTTGTCT 57.499 30.769 0.00 0.00 0.00 3.41
3359 3635 9.602568 TGAATACACTGTTTTTACTGTTGTCTA 57.397 29.630 0.00 0.00 0.00 2.59
3360 3636 9.859692 GAATACACTGTTTTTACTGTTGTCTAC 57.140 33.333 0.00 0.00 0.00 2.59
3361 3637 9.609346 AATACACTGTTTTTACTGTTGTCTACT 57.391 29.630 0.00 0.00 0.00 2.57
3362 3638 7.916914 ACACTGTTTTTACTGTTGTCTACTT 57.083 32.000 0.00 0.00 0.00 2.24
3363 3639 7.748847 ACACTGTTTTTACTGTTGTCTACTTG 58.251 34.615 0.00 0.00 0.00 3.16
3364 3640 7.389607 ACACTGTTTTTACTGTTGTCTACTTGT 59.610 33.333 0.00 0.00 0.00 3.16
3365 3641 7.692291 CACTGTTTTTACTGTTGTCTACTTGTG 59.308 37.037 0.00 0.00 0.00 3.33
3366 3642 6.548171 TGTTTTTACTGTTGTCTACTTGTGC 58.452 36.000 0.00 0.00 0.00 4.57
3367 3643 6.149640 TGTTTTTACTGTTGTCTACTTGTGCA 59.850 34.615 0.00 0.00 0.00 4.57
3368 3644 6.935741 TTTTACTGTTGTCTACTTGTGCAT 57.064 33.333 0.00 0.00 0.00 3.96
3369 3645 6.935741 TTTACTGTTGTCTACTTGTGCATT 57.064 33.333 0.00 0.00 0.00 3.56
3370 3646 6.935741 TTACTGTTGTCTACTTGTGCATTT 57.064 33.333 0.00 0.00 0.00 2.32
3371 3647 5.424121 ACTGTTGTCTACTTGTGCATTTC 57.576 39.130 0.00 0.00 0.00 2.17
3372 3648 4.275936 ACTGTTGTCTACTTGTGCATTTCC 59.724 41.667 0.00 0.00 0.00 3.13
3373 3649 3.568007 TGTTGTCTACTTGTGCATTTCCC 59.432 43.478 0.00 0.00 0.00 3.97
3374 3650 3.500448 TGTCTACTTGTGCATTTCCCA 57.500 42.857 0.00 0.00 0.00 4.37
3375 3651 3.826524 TGTCTACTTGTGCATTTCCCAA 58.173 40.909 0.00 0.00 0.00 4.12
3376 3652 4.211125 TGTCTACTTGTGCATTTCCCAAA 58.789 39.130 0.00 0.00 0.00 3.28
3377 3653 4.037446 TGTCTACTTGTGCATTTCCCAAAC 59.963 41.667 0.00 0.00 0.00 2.93
3378 3654 4.037446 GTCTACTTGTGCATTTCCCAAACA 59.963 41.667 0.00 0.00 0.00 2.83
3379 3655 4.832266 TCTACTTGTGCATTTCCCAAACAT 59.168 37.500 0.00 0.00 0.00 2.71
3380 3656 6.007076 TCTACTTGTGCATTTCCCAAACATA 58.993 36.000 0.00 0.00 0.00 2.29
3381 3657 5.743636 ACTTGTGCATTTCCCAAACATAT 57.256 34.783 0.00 0.00 0.00 1.78
3382 3658 6.112927 ACTTGTGCATTTCCCAAACATATT 57.887 33.333 0.00 0.00 0.00 1.28
3383 3659 6.165577 ACTTGTGCATTTCCCAAACATATTC 58.834 36.000 0.00 0.00 0.00 1.75
3502 3778 9.692749 CGAACTAACTGGATATATTTCTTGCTA 57.307 33.333 0.00 0.00 0.00 3.49
3672 4288 4.882842 ATTTTGGGCGATTTGTTAACCT 57.117 36.364 2.48 0.00 0.00 3.50
3786 4402 4.051922 GGAAGATAATGGCTACACACTCG 58.948 47.826 0.00 0.00 0.00 4.18
3804 4420 5.699458 ACACTCGATTTACCAGGTTAGTTTG 59.301 40.000 0.00 0.00 0.00 2.93
3847 4463 3.389002 GCCTTCCAATTTTATGCCCTGAT 59.611 43.478 0.00 0.00 0.00 2.90
4040 4656 6.985645 CCTTGTTTGATTTGTTCATCCAAGAA 59.014 34.615 12.56 0.00 40.95 2.52
4041 4657 7.495279 CCTTGTTTGATTTGTTCATCCAAGAAA 59.505 33.333 12.56 0.00 40.95 2.52
4042 4658 8.783833 TTGTTTGATTTGTTCATCCAAGAAAA 57.216 26.923 0.00 0.00 31.39 2.29
4043 4659 8.783833 TGTTTGATTTGTTCATCCAAGAAAAA 57.216 26.923 0.00 0.00 31.39 1.94
4101 4721 5.531287 CCTAGGTACATTTATGCCACCTTTC 59.469 44.000 17.04 0.00 41.24 2.62
4109 4729 7.775120 ACATTTATGCCACCTTTCTATTCTTG 58.225 34.615 0.00 0.00 0.00 3.02
4188 4808 1.467734 GTGACAGCAGCTGGATTTGAG 59.532 52.381 26.38 0.00 35.51 3.02
4521 5148 3.192212 GGATGCCTTCACTTTCCTTTCTG 59.808 47.826 0.00 0.00 0.00 3.02
4577 5204 6.127338 GCTATATTTTCCAGCCAGTTTTCCTT 60.127 38.462 0.00 0.00 0.00 3.36
4836 5492 2.191400 CCTCCAGGAGATTCAGGTCAA 58.809 52.381 19.21 0.00 37.39 3.18
4896 5554 8.704668 TGTCATCATTTCATCCTACTTTAGCTA 58.295 33.333 0.00 0.00 0.00 3.32
4941 5599 5.531287 GGAAGAGTTTGTTGGACTTGTGTAT 59.469 40.000 0.00 0.00 0.00 2.29
5261 5919 3.753272 GACAGGTCATTACAAGCACATGT 59.247 43.478 0.00 0.00 36.53 3.21
5563 6221 4.672801 GCTGGTAGCATTGCTTTCAGTAAC 60.673 45.833 26.82 15.64 41.89 2.50
5870 6528 9.878599 GCAATGTTTATTATATGTACTGGTCAC 57.121 33.333 0.00 0.00 0.00 3.67
6051 6709 6.747125 TGCAGATTAAAGAAAATGCTCAACA 58.253 32.000 0.00 0.00 35.77 3.33
6212 6870 1.134580 AGATGGAACTCGATGCACCAG 60.135 52.381 0.00 0.00 34.08 4.00
6214 6872 1.262417 TGGAACTCGATGCACCAGTA 58.738 50.000 0.00 0.00 0.00 2.74
6403 7061 0.176680 GATGGAGTCGTGCATGGACT 59.823 55.000 19.58 19.58 46.91 3.85
6404 7062 0.107993 ATGGAGTCGTGCATGGACTG 60.108 55.000 23.13 9.07 44.41 3.51
6405 7063 1.448540 GGAGTCGTGCATGGACTGG 60.449 63.158 23.13 0.68 44.41 4.00
6406 7064 1.591703 GAGTCGTGCATGGACTGGA 59.408 57.895 23.13 3.30 44.41 3.86
6407 7065 0.176680 GAGTCGTGCATGGACTGGAT 59.823 55.000 23.13 4.52 44.41 3.41
6408 7066 0.176680 AGTCGTGCATGGACTGGATC 59.823 55.000 19.01 1.59 42.87 3.36
6409 7067 1.141665 TCGTGCATGGACTGGATCG 59.858 57.895 15.82 0.89 0.00 3.69
6410 7068 1.884464 CGTGCATGGACTGGATCGG 60.884 63.158 15.82 0.00 0.00 4.18
6566 7224 3.440173 GCATCACTTTTCGGATTTCAGGA 59.560 43.478 0.00 0.00 0.00 3.86
6567 7225 4.096984 GCATCACTTTTCGGATTTCAGGAT 59.903 41.667 0.00 0.00 0.00 3.24
6580 7238 8.487848 TCGGATTTCAGGATTACTAATTTGGTA 58.512 33.333 0.00 0.00 0.00 3.25
6625 7283 7.651304 CAGTAATTGTTTGTATTTTGCACCTGA 59.349 33.333 0.00 0.00 0.00 3.86
6731 7389 0.596577 TCCCGAGCATCATAGCGTAC 59.403 55.000 0.00 0.00 40.15 3.67
6732 7390 0.388649 CCCGAGCATCATAGCGTACC 60.389 60.000 0.00 0.00 40.15 3.34
6733 7391 0.313987 CCGAGCATCATAGCGTACCA 59.686 55.000 0.00 0.00 40.15 3.25
6872 7614 1.255882 CTTGGGTTGGTGCTGCAATA 58.744 50.000 2.77 0.00 0.00 1.90
6957 7699 4.402056 ACACCGGAATGTATTCTGTAGG 57.598 45.455 9.46 8.97 40.69 3.18
7004 7746 0.747644 CTGGCATGGTATGTGGCGAA 60.748 55.000 0.00 0.00 44.31 4.70
7028 7770 2.726373 CGCGCGTATTTGGACAATTTGA 60.726 45.455 24.19 0.00 0.00 2.69
7080 7822 2.102588 CCTCGTATCGAAACAAGGGGAT 59.897 50.000 0.00 0.00 34.74 3.85
7093 7835 7.476540 AAACAAGGGGATCAACTAATTAACC 57.523 36.000 0.00 0.00 0.00 2.85
7096 7838 7.013834 ACAAGGGGATCAACTAATTAACCAAA 58.986 34.615 0.00 0.00 0.00 3.28
7160 7903 0.604243 TTAGCCATTCGCCACGTGTT 60.604 50.000 15.65 0.00 38.78 3.32
7188 7936 1.408266 GGGCGCTTCCTCCAGATTTTA 60.408 52.381 7.64 0.00 34.39 1.52
7290 8045 3.818773 TCCCTAGCTTTTCGACCAAAAAG 59.181 43.478 0.00 3.44 45.10 2.27
7298 8053 6.816140 AGCTTTTCGACCAAAAAGAAATTTCA 59.184 30.769 19.99 0.00 45.12 2.69
7304 8059 9.980780 TTCGACCAAAAAGAAATTTCAAAATTC 57.019 25.926 19.99 6.57 37.62 2.17
7305 8060 9.377312 TCGACCAAAAAGAAATTTCAAAATTCT 57.623 25.926 19.99 0.00 37.62 2.40
7450 8220 4.970611 GCGTTTTCTGTCTTCTTTTCCTTC 59.029 41.667 0.00 0.00 0.00 3.46
7458 8228 4.141801 TGTCTTCTTTTCCTTCCGTGAGAA 60.142 41.667 0.00 0.00 0.00 2.87
7482 8252 0.949105 GGTTTTGCTTCCGCGAGAGA 60.949 55.000 8.23 0.00 39.65 3.10
7527 8301 3.050275 GCCGTGCCTCTTGGACAC 61.050 66.667 0.00 0.00 37.17 3.67
7533 8307 2.034558 CGTGCCTCTTGGACACAAAAAT 59.965 45.455 0.00 0.00 39.01 1.82
7585 8362 3.194116 TGAGAGGCATGATTTTGCTTTCC 59.806 43.478 0.00 0.00 42.38 3.13
7621 8398 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
7638 8420 0.511653 GGTCGTGCCTCTTCGAAAAC 59.488 55.000 0.00 0.00 37.81 2.43
7685 8471 2.202610 CATTCGCGAGAGGCACGA 60.203 61.111 9.59 0.00 43.84 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.819632 GTAAGATGCGGGCAGTGGG 60.820 63.158 0.00 0.00 0.00 4.61
17 18 1.138859 TCTCATGTGGGTAAGATGCGG 59.861 52.381 0.00 0.00 29.55 5.69
45 46 1.318576 GTTGAACAAGTGGTGGAGGG 58.681 55.000 0.00 0.00 0.00 4.30
79 80 1.895131 GGGTGCAAATCCACAACATCT 59.105 47.619 0.00 0.00 37.46 2.90
102 103 4.154195 GTCAAGTTGACTCGCATATTGGTT 59.846 41.667 25.56 0.00 43.73 3.67
103 104 3.684788 GTCAAGTTGACTCGCATATTGGT 59.315 43.478 25.56 0.00 43.73 3.67
134 135 2.564062 CCTTTTGTTGGATCCATGCAGT 59.436 45.455 17.06 0.00 0.00 4.40
135 136 2.093869 CCCTTTTGTTGGATCCATGCAG 60.094 50.000 17.06 7.54 0.00 4.41
148 149 5.777732 TGGAGTTATAAATGCACCCTTTTGT 59.222 36.000 2.79 0.00 0.00 2.83
175 176 1.137086 CGACCATGGATCTTTCGTCCT 59.863 52.381 21.47 0.00 36.68 3.85
176 177 1.136305 TCGACCATGGATCTTTCGTCC 59.864 52.381 21.47 0.00 36.26 4.79
215 216 4.078516 AAGGTGGTAGCGGGCGAC 62.079 66.667 0.00 0.00 0.00 5.19
219 220 2.125106 GCTCAAGGTGGTAGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
222 223 0.246635 TTCTCGCTCAAGGTGGTAGC 59.753 55.000 0.00 0.00 0.00 3.58
227 228 2.416747 TGTGATTTCTCGCTCAAGGTG 58.583 47.619 0.00 0.00 32.91 4.00
231 232 2.703416 AGCATGTGATTTCTCGCTCAA 58.297 42.857 0.00 0.00 32.91 3.02
235 236 3.058639 GGGATTAGCATGTGATTTCTCGC 60.059 47.826 0.00 0.00 0.00 5.03
242 243 2.241941 TGTGTGGGGATTAGCATGTGAT 59.758 45.455 0.00 0.00 0.00 3.06
294 295 6.449635 AGTGCATAAAGTGAAGTTGTTCAA 57.550 33.333 0.00 0.00 44.44 2.69
295 296 6.449635 AAGTGCATAAAGTGAAGTTGTTCA 57.550 33.333 0.00 0.00 40.55 3.18
301 302 7.200455 GGTTGTAAAAGTGCATAAAGTGAAGT 58.800 34.615 0.00 0.00 0.00 3.01
308 309 3.318275 TGGCGGTTGTAAAAGTGCATAAA 59.682 39.130 0.00 0.00 0.00 1.40
321 322 2.824041 GCGATGGATGGCGGTTGT 60.824 61.111 0.00 0.00 0.00 3.32
322 323 1.932011 TTTGCGATGGATGGCGGTTG 61.932 55.000 0.00 0.00 33.95 3.77
378 379 3.247173 GGCAGTGAGATCGATGATGTTTC 59.753 47.826 0.54 0.00 0.00 2.78
399 400 5.887598 TGGTGAATAATCTCAACATGAAGGG 59.112 40.000 0.00 0.00 38.12 3.95
400 401 6.600822 ACTGGTGAATAATCTCAACATGAAGG 59.399 38.462 0.00 0.00 42.08 3.46
458 459 0.392706 TCGGTGCGAGCAATATGGAT 59.607 50.000 0.00 0.00 0.00 3.41
473 475 3.134081 ACCATGGATAATTCGTCTTCGGT 59.866 43.478 21.47 0.00 37.69 4.69
474 476 3.494626 CACCATGGATAATTCGTCTTCGG 59.505 47.826 21.47 0.00 37.69 4.30
487 489 0.257039 GGTCTGAAGGCACCATGGAT 59.743 55.000 21.47 0.00 32.33 3.41
501 503 3.191371 GGCAAATTAGACTGGTTGGTCTG 59.809 47.826 7.31 0.00 44.98 3.51
519 521 2.091555 GGTGATATAGGGTTTGGGGCAA 60.092 50.000 0.00 0.00 0.00 4.52
544 546 0.611896 ATACCCTGTTGTGGCAAGGC 60.612 55.000 0.00 0.00 0.00 4.35
557 559 4.325187 GGGACGACTCTATCCATATACCCT 60.325 50.000 0.00 0.00 36.65 4.34
622 626 8.587950 GCGAGATTTCTTATTGGTCTTATATCG 58.412 37.037 0.00 0.00 0.00 2.92
630 634 4.271291 GTCTGGCGAGATTTCTTATTGGTC 59.729 45.833 0.38 0.00 0.00 4.02
644 652 0.512952 CGAAAACCTTGTCTGGCGAG 59.487 55.000 0.00 0.00 0.00 5.03
650 658 2.232941 TCTATCGGCGAAAACCTTGTCT 59.767 45.455 15.93 0.00 0.00 3.41
653 661 1.327764 GCTCTATCGGCGAAAACCTTG 59.672 52.381 15.93 0.00 0.00 3.61
657 665 4.852609 TTAAAGCTCTATCGGCGAAAAC 57.147 40.909 15.93 1.85 34.52 2.43
664 672 5.341617 AGAACGAGTTTAAAGCTCTATCGG 58.658 41.667 12.75 3.78 33.25 4.18
667 675 7.838884 ACCTAAGAACGAGTTTAAAGCTCTAT 58.161 34.615 12.75 4.98 0.00 1.98
760 790 2.716217 ACTATGCTCAAGCCTTGTTCC 58.284 47.619 4.04 0.00 41.18 3.62
761 791 4.457257 AGAAACTATGCTCAAGCCTTGTTC 59.543 41.667 4.04 0.00 41.18 3.18
807 839 7.665145 GGAACGGTAGAGAGTATACCTAGAAAT 59.335 40.741 0.00 0.00 40.54 2.17
824 856 2.199236 GCTCGGTATTTGGAACGGTAG 58.801 52.381 0.00 0.00 0.00 3.18
1120 1158 2.159142 ACTTAACTAATCGCTGGACGGG 60.159 50.000 0.00 0.00 43.89 5.28
1123 1162 3.118884 TGGGACTTAACTAATCGCTGGAC 60.119 47.826 0.00 0.00 0.00 4.02
1137 1176 2.684943 TGTGAAGGTCAGTGGGACTTA 58.315 47.619 0.00 0.00 46.16 2.24
1157 1196 2.281761 CCTGCACGGCCAGAAGTT 60.282 61.111 2.24 0.00 34.77 2.66
1286 1325 4.764896 GTCGGGACCAAAGACGTT 57.235 55.556 0.00 0.00 0.00 3.99
1309 1348 2.166664 AGAAGAGGACGGGAAGAAATCG 59.833 50.000 0.00 0.00 0.00 3.34
1311 1350 3.445987 AGAGAAGAGGACGGGAAGAAAT 58.554 45.455 0.00 0.00 0.00 2.17
1326 1365 9.265901 TCTAAAACAGTGAATGAAGAAGAGAAG 57.734 33.333 0.00 0.00 0.00 2.85
1339 1378 6.553852 ACTTCCTACCTCTCTAAAACAGTGAA 59.446 38.462 0.00 0.00 0.00 3.18
1340 1379 6.075984 ACTTCCTACCTCTCTAAAACAGTGA 58.924 40.000 0.00 0.00 0.00 3.41
1341 1380 6.347859 ACTTCCTACCTCTCTAAAACAGTG 57.652 41.667 0.00 0.00 0.00 3.66
1342 1381 6.997942 AACTTCCTACCTCTCTAAAACAGT 57.002 37.500 0.00 0.00 0.00 3.55
1393 1439 8.488308 AACTTACTTTGGAGTTTCCTAGTAGA 57.512 34.615 0.00 0.00 36.49 2.59
1547 1600 3.072330 TGGAGTGAAGCCTCAATACACAA 59.928 43.478 0.00 0.00 35.57 3.33
1549 1602 3.334583 TGGAGTGAAGCCTCAATACAC 57.665 47.619 0.00 0.00 35.57 2.90
1554 1607 4.774124 CAGAATATGGAGTGAAGCCTCAA 58.226 43.478 0.00 0.00 31.88 3.02
1623 1676 9.343103 CATCTCTATGTCGTATTTGTACCATAC 57.657 37.037 0.00 0.00 0.00 2.39
1665 1728 4.616835 GCAATCAGTCTAGGTTTTTGCCTG 60.617 45.833 0.00 0.00 39.60 4.85
1733 1798 2.169352 CTCATCGAATTCCAGGTGAGGT 59.831 50.000 13.13 0.00 31.77 3.85
1736 1801 4.023980 AGTACTCATCGAATTCCAGGTGA 58.976 43.478 0.00 0.00 0.00 4.02
1760 1825 9.944663 GAACAAACTCTGATAACAAAATACACA 57.055 29.630 0.00 0.00 0.00 3.72
1995 2062 4.040376 GCATAGCTTCAAGTAGCAAATGC 58.960 43.478 16.77 16.77 46.16 3.56
2101 2169 7.372714 CAAATTCAATGTGGAATCTGAAGTGA 58.627 34.615 0.00 0.00 36.51 3.41
2150 2245 3.689347 AGCCAGTAGTCAATTTGCATCA 58.311 40.909 0.00 0.00 0.00 3.07
2164 2259 6.524101 ACAACAAAGAAAGAAAAGCCAGTA 57.476 33.333 0.00 0.00 0.00 2.74
2169 2264 7.411480 GGTGTGTTACAACAAAGAAAGAAAAGC 60.411 37.037 0.00 0.00 41.21 3.51
2208 2303 0.639943 TAGCCCCTGGACATCCTGTA 59.360 55.000 0.00 0.00 36.82 2.74
2384 2481 8.801299 TCCAAAGTGCAGTTATGAAAATTATGA 58.199 29.630 7.33 0.00 0.00 2.15
2447 2544 8.812972 TCACTAGTGACCTAAAACATCTTACAT 58.187 33.333 21.74 0.00 34.14 2.29
2518 2617 5.476599 TCACTAGGTTAAAAATGCTGCATGT 59.523 36.000 17.00 7.88 0.00 3.21
2519 2618 5.953183 TCACTAGGTTAAAAATGCTGCATG 58.047 37.500 17.00 1.83 0.00 4.06
2520 2619 6.588719 TTCACTAGGTTAAAAATGCTGCAT 57.411 33.333 9.81 9.81 0.00 3.96
2522 2621 6.145534 GGTTTTCACTAGGTTAAAAATGCTGC 59.854 38.462 0.00 0.00 0.00 5.25
2523 2622 7.206687 TGGTTTTCACTAGGTTAAAAATGCTG 58.793 34.615 0.00 0.00 0.00 4.41
2524 2623 7.354751 TGGTTTTCACTAGGTTAAAAATGCT 57.645 32.000 0.00 0.00 0.00 3.79
2525 2624 9.699703 TTATGGTTTTCACTAGGTTAAAAATGC 57.300 29.630 0.00 0.00 0.00 3.56
2575 2676 7.907045 GGCATCTATAATTCGCTTATTGTCATG 59.093 37.037 0.00 0.00 32.26 3.07
2587 2688 5.106948 ACTGCAAATCGGCATCTATAATTCG 60.107 40.000 0.00 0.00 43.97 3.34
2653 2754 4.525912 AGGGTTTCTAAAGCAGCAAATG 57.474 40.909 6.93 0.00 38.11 2.32
2734 2836 7.713073 CCAGGAACATAGAGAAGGATAACTTTC 59.287 40.741 0.00 0.00 40.21 2.62
3015 3123 0.036671 CTCTGCATGTCAGGAGTGCA 60.037 55.000 14.50 8.44 45.69 4.57
3081 3189 4.462132 AGTCATGATCTCATACCTCCATCG 59.538 45.833 0.00 0.00 34.26 3.84
3143 3251 7.448161 CCCATAATAGCAGACCAAATCACATAA 59.552 37.037 0.00 0.00 0.00 1.90
3222 3498 5.875224 TGAACCATGTGATCTTCCAAACTA 58.125 37.500 0.00 0.00 0.00 2.24
3223 3499 4.728772 TGAACCATGTGATCTTCCAAACT 58.271 39.130 0.00 0.00 0.00 2.66
3224 3500 5.649782 ATGAACCATGTGATCTTCCAAAC 57.350 39.130 0.00 0.00 0.00 2.93
3225 3501 6.267242 TCAAATGAACCATGTGATCTTCCAAA 59.733 34.615 0.00 0.00 33.67 3.28
3226 3502 5.774184 TCAAATGAACCATGTGATCTTCCAA 59.226 36.000 0.00 0.00 33.67 3.53
3227 3503 5.183713 GTCAAATGAACCATGTGATCTTCCA 59.816 40.000 3.43 0.00 39.82 3.53
3228 3504 5.416952 AGTCAAATGAACCATGTGATCTTCC 59.583 40.000 3.43 0.00 39.82 3.46
3229 3505 6.506500 AGTCAAATGAACCATGTGATCTTC 57.493 37.500 3.43 0.00 39.82 2.87
3230 3506 8.585471 AATAGTCAAATGAACCATGTGATCTT 57.415 30.769 3.43 0.00 39.82 2.40
3231 3507 7.284034 GGAATAGTCAAATGAACCATGTGATCT 59.716 37.037 3.43 5.65 39.82 2.75
3232 3508 7.420800 GGAATAGTCAAATGAACCATGTGATC 58.579 38.462 3.43 0.00 39.82 2.92
3233 3509 6.322201 GGGAATAGTCAAATGAACCATGTGAT 59.678 38.462 3.43 0.00 39.82 3.06
3234 3510 5.652014 GGGAATAGTCAAATGAACCATGTGA 59.348 40.000 0.00 0.00 35.94 3.58
3235 3511 5.418524 TGGGAATAGTCAAATGAACCATGTG 59.581 40.000 0.00 0.00 30.82 3.21
3236 3512 5.579047 TGGGAATAGTCAAATGAACCATGT 58.421 37.500 0.00 0.00 0.00 3.21
3237 3513 6.239120 GGATGGGAATAGTCAAATGAACCATG 60.239 42.308 0.00 0.00 36.41 3.66
3238 3514 5.835280 GGATGGGAATAGTCAAATGAACCAT 59.165 40.000 0.00 0.00 38.77 3.55
3239 3515 5.044179 AGGATGGGAATAGTCAAATGAACCA 60.044 40.000 0.00 0.00 0.00 3.67
3240 3516 5.449553 AGGATGGGAATAGTCAAATGAACC 58.550 41.667 0.00 0.00 0.00 3.62
3241 3517 7.410120 AAAGGATGGGAATAGTCAAATGAAC 57.590 36.000 0.00 0.00 0.00 3.18
3242 3518 8.313292 CAAAAAGGATGGGAATAGTCAAATGAA 58.687 33.333 0.00 0.00 0.00 2.57
3243 3519 7.673504 TCAAAAAGGATGGGAATAGTCAAATGA 59.326 33.333 0.00 0.00 0.00 2.57
3244 3520 7.839907 TCAAAAAGGATGGGAATAGTCAAATG 58.160 34.615 0.00 0.00 0.00 2.32
3245 3521 8.480501 CATCAAAAAGGATGGGAATAGTCAAAT 58.519 33.333 0.00 0.00 40.75 2.32
3246 3522 7.673504 TCATCAAAAAGGATGGGAATAGTCAAA 59.326 33.333 3.59 0.00 43.82 2.69
3247 3523 7.122650 GTCATCAAAAAGGATGGGAATAGTCAA 59.877 37.037 3.59 0.00 43.82 3.18
3248 3524 6.603201 GTCATCAAAAAGGATGGGAATAGTCA 59.397 38.462 3.59 0.00 43.82 3.41
3249 3525 6.238484 CGTCATCAAAAAGGATGGGAATAGTC 60.238 42.308 3.59 0.00 43.82 2.59
3250 3526 5.590259 CGTCATCAAAAAGGATGGGAATAGT 59.410 40.000 3.59 0.00 43.82 2.12
3251 3527 5.590259 ACGTCATCAAAAAGGATGGGAATAG 59.410 40.000 3.59 0.00 43.82 1.73
3252 3528 5.505780 ACGTCATCAAAAAGGATGGGAATA 58.494 37.500 3.59 0.00 43.82 1.75
3253 3529 4.344104 ACGTCATCAAAAAGGATGGGAAT 58.656 39.130 3.59 0.00 43.82 3.01
3254 3530 3.761897 ACGTCATCAAAAAGGATGGGAA 58.238 40.909 3.59 0.00 43.82 3.97
3255 3531 3.433306 ACGTCATCAAAAAGGATGGGA 57.567 42.857 3.59 0.00 43.82 4.37
3256 3532 4.519540 AAACGTCATCAAAAAGGATGGG 57.480 40.909 3.59 0.00 43.82 4.00
3257 3533 7.275560 GGAAATAAACGTCATCAAAAAGGATGG 59.724 37.037 3.59 0.00 43.82 3.51
3258 3534 8.028938 AGGAAATAAACGTCATCAAAAAGGATG 58.971 33.333 0.00 0.00 44.78 3.51
3259 3535 8.122472 AGGAAATAAACGTCATCAAAAAGGAT 57.878 30.769 0.00 0.00 0.00 3.24
3260 3536 7.519032 AGGAAATAAACGTCATCAAAAAGGA 57.481 32.000 0.00 0.00 0.00 3.36
3261 3537 8.293867 TGTAGGAAATAAACGTCATCAAAAAGG 58.706 33.333 0.00 0.00 0.00 3.11
3262 3538 9.672086 TTGTAGGAAATAAACGTCATCAAAAAG 57.328 29.630 0.00 0.00 0.00 2.27
3267 3543 9.619316 CATTTTTGTAGGAAATAAACGTCATCA 57.381 29.630 0.00 0.00 0.00 3.07
3268 3544 8.583765 GCATTTTTGTAGGAAATAAACGTCATC 58.416 33.333 0.00 0.00 0.00 2.92
3269 3545 7.544217 GGCATTTTTGTAGGAAATAAACGTCAT 59.456 33.333 0.00 0.00 0.00 3.06
3270 3546 6.864165 GGCATTTTTGTAGGAAATAAACGTCA 59.136 34.615 0.00 0.00 0.00 4.35
3271 3547 6.864165 TGGCATTTTTGTAGGAAATAAACGTC 59.136 34.615 0.00 0.00 0.00 4.34
3272 3548 6.750148 TGGCATTTTTGTAGGAAATAAACGT 58.250 32.000 0.00 0.00 0.00 3.99
3273 3549 7.826260 ATGGCATTTTTGTAGGAAATAAACG 57.174 32.000 0.00 0.00 0.00 3.60
3278 3554 9.791801 AGTTAAAATGGCATTTTTGTAGGAAAT 57.208 25.926 35.11 21.64 42.13 2.17
3279 3555 9.620259 AAGTTAAAATGGCATTTTTGTAGGAAA 57.380 25.926 35.11 21.84 42.13 3.13
3280 3556 9.050601 CAAGTTAAAATGGCATTTTTGTAGGAA 57.949 29.630 35.11 22.44 42.13 3.36
3281 3557 7.172361 GCAAGTTAAAATGGCATTTTTGTAGGA 59.828 33.333 35.11 18.56 42.13 2.94
3282 3558 7.041508 TGCAAGTTAAAATGGCATTTTTGTAGG 60.042 33.333 35.11 24.14 42.13 3.18
3283 3559 7.859598 TGCAAGTTAAAATGGCATTTTTGTAG 58.140 30.769 35.11 23.54 42.13 2.74
3284 3560 7.792374 TGCAAGTTAAAATGGCATTTTTGTA 57.208 28.000 35.11 25.17 42.13 2.41
3285 3561 6.690194 TGCAAGTTAAAATGGCATTTTTGT 57.310 29.167 35.11 20.78 42.13 2.83
3286 3562 9.843334 ATATTGCAAGTTAAAATGGCATTTTTG 57.157 25.926 35.11 27.95 42.13 2.44
3287 3563 9.843334 CATATTGCAAGTTAAAATGGCATTTTT 57.157 25.926 35.11 19.84 42.13 1.94
3288 3564 9.228949 TCATATTGCAAGTTAAAATGGCATTTT 57.771 25.926 33.24 33.24 44.13 1.82
3289 3565 8.789825 TCATATTGCAAGTTAAAATGGCATTT 57.210 26.923 19.39 19.39 34.03 2.32
3290 3566 8.667463 GTTCATATTGCAAGTTAAAATGGCATT 58.333 29.630 6.96 6.96 34.03 3.56
3291 3567 7.823310 TGTTCATATTGCAAGTTAAAATGGCAT 59.177 29.630 4.94 0.00 34.03 4.40
3292 3568 7.157347 TGTTCATATTGCAAGTTAAAATGGCA 58.843 30.769 4.94 0.00 0.00 4.92
3293 3569 7.331687 ACTGTTCATATTGCAAGTTAAAATGGC 59.668 33.333 4.94 0.00 0.00 4.40
3294 3570 8.761575 ACTGTTCATATTGCAAGTTAAAATGG 57.238 30.769 4.94 0.00 0.00 3.16
3296 3572 9.762933 ACAACTGTTCATATTGCAAGTTAAAAT 57.237 25.926 4.94 0.00 0.00 1.82
3297 3573 9.593134 AACAACTGTTCATATTGCAAGTTAAAA 57.407 25.926 4.94 0.00 31.64 1.52
3299 3575 9.672086 GTAACAACTGTTCATATTGCAAGTTAA 57.328 29.630 4.94 0.00 39.31 2.01
3300 3576 8.841300 TGTAACAACTGTTCATATTGCAAGTTA 58.159 29.630 4.94 0.51 39.31 2.24
3301 3577 7.711846 TGTAACAACTGTTCATATTGCAAGTT 58.288 30.769 4.94 0.00 39.31 2.66
3302 3578 7.270757 TGTAACAACTGTTCATATTGCAAGT 57.729 32.000 4.94 0.00 39.31 3.16
3303 3579 8.746922 AATGTAACAACTGTTCATATTGCAAG 57.253 30.769 4.94 0.00 39.31 4.01
3304 3580 9.539825 AAAATGTAACAACTGTTCATATTGCAA 57.460 25.926 0.00 0.00 39.31 4.08
3305 3581 9.190858 GAAAATGTAACAACTGTTCATATTGCA 57.809 29.630 0.00 0.00 39.31 4.08
3306 3582 9.190858 TGAAAATGTAACAACTGTTCATATTGC 57.809 29.630 0.00 1.87 39.31 3.56
3311 3587 9.985730 ATTCATGAAAATGTAACAACTGTTCAT 57.014 25.926 13.09 0.90 39.31 2.57
3315 3591 9.677567 GTGTATTCATGAAAATGTAACAACTGT 57.322 29.630 13.09 0.00 0.00 3.55
3316 3592 9.897744 AGTGTATTCATGAAAATGTAACAACTG 57.102 29.630 13.09 0.00 0.00 3.16
3317 3593 9.897744 CAGTGTATTCATGAAAATGTAACAACT 57.102 29.630 13.09 3.88 0.00 3.16
3318 3594 9.677567 ACAGTGTATTCATGAAAATGTAACAAC 57.322 29.630 13.09 1.76 0.00 3.32
3329 3605 9.729023 CAACAGTAAAAACAGTGTATTCATGAA 57.271 29.630 11.26 11.26 31.76 2.57
3330 3606 8.898761 ACAACAGTAAAAACAGTGTATTCATGA 58.101 29.630 0.00 0.00 31.76 3.07
3331 3607 9.169468 GACAACAGTAAAAACAGTGTATTCATG 57.831 33.333 0.00 1.11 31.76 3.07
3332 3608 9.120538 AGACAACAGTAAAAACAGTGTATTCAT 57.879 29.630 0.00 0.00 31.76 2.57
3333 3609 8.500753 AGACAACAGTAAAAACAGTGTATTCA 57.499 30.769 0.00 0.00 31.76 2.57
3334 3610 9.859692 GTAGACAACAGTAAAAACAGTGTATTC 57.140 33.333 0.00 0.00 31.76 1.75
3335 3611 9.609346 AGTAGACAACAGTAAAAACAGTGTATT 57.391 29.630 0.00 0.00 31.76 1.89
3336 3612 9.609346 AAGTAGACAACAGTAAAAACAGTGTAT 57.391 29.630 0.00 0.00 31.76 2.29
3337 3613 8.875803 CAAGTAGACAACAGTAAAAACAGTGTA 58.124 33.333 0.00 0.00 31.76 2.90
3338 3614 7.389607 ACAAGTAGACAACAGTAAAAACAGTGT 59.610 33.333 0.00 0.00 33.43 3.55
3339 3615 7.692291 CACAAGTAGACAACAGTAAAAACAGTG 59.308 37.037 0.00 0.00 0.00 3.66
3340 3616 7.625606 GCACAAGTAGACAACAGTAAAAACAGT 60.626 37.037 0.00 0.00 0.00 3.55
3341 3617 6.687105 GCACAAGTAGACAACAGTAAAAACAG 59.313 38.462 0.00 0.00 0.00 3.16
3342 3618 6.149640 TGCACAAGTAGACAACAGTAAAAACA 59.850 34.615 0.00 0.00 0.00 2.83
3343 3619 6.548171 TGCACAAGTAGACAACAGTAAAAAC 58.452 36.000 0.00 0.00 0.00 2.43
3344 3620 6.745159 TGCACAAGTAGACAACAGTAAAAA 57.255 33.333 0.00 0.00 0.00 1.94
3345 3621 6.935741 ATGCACAAGTAGACAACAGTAAAA 57.064 33.333 0.00 0.00 0.00 1.52
3346 3622 6.935741 AATGCACAAGTAGACAACAGTAAA 57.064 33.333 0.00 0.00 0.00 2.01
3347 3623 6.017440 GGAAATGCACAAGTAGACAACAGTAA 60.017 38.462 0.00 0.00 0.00 2.24
3348 3624 5.468746 GGAAATGCACAAGTAGACAACAGTA 59.531 40.000 0.00 0.00 0.00 2.74
3349 3625 4.275936 GGAAATGCACAAGTAGACAACAGT 59.724 41.667 0.00 0.00 0.00 3.55
3350 3626 4.320494 GGGAAATGCACAAGTAGACAACAG 60.320 45.833 0.00 0.00 0.00 3.16
3351 3627 3.568007 GGGAAATGCACAAGTAGACAACA 59.432 43.478 0.00 0.00 0.00 3.33
3352 3628 3.568007 TGGGAAATGCACAAGTAGACAAC 59.432 43.478 0.00 0.00 0.00 3.32
3353 3629 3.826524 TGGGAAATGCACAAGTAGACAA 58.173 40.909 0.00 0.00 0.00 3.18
3354 3630 3.500448 TGGGAAATGCACAAGTAGACA 57.500 42.857 0.00 0.00 0.00 3.41
3355 3631 4.037446 TGTTTGGGAAATGCACAAGTAGAC 59.963 41.667 0.00 0.00 41.79 2.59
3356 3632 4.211125 TGTTTGGGAAATGCACAAGTAGA 58.789 39.130 0.00 0.00 41.79 2.59
3357 3633 4.582701 TGTTTGGGAAATGCACAAGTAG 57.417 40.909 0.00 0.00 41.79 2.57
3358 3634 6.849085 ATATGTTTGGGAAATGCACAAGTA 57.151 33.333 0.00 0.00 41.79 2.24
3359 3635 5.743636 ATATGTTTGGGAAATGCACAAGT 57.256 34.783 0.00 0.00 41.79 3.16
3360 3636 5.581874 GGAATATGTTTGGGAAATGCACAAG 59.418 40.000 0.00 0.00 41.79 3.16
3361 3637 5.248020 AGGAATATGTTTGGGAAATGCACAA 59.752 36.000 0.00 0.00 38.36 3.33
3362 3638 4.776837 AGGAATATGTTTGGGAAATGCACA 59.223 37.500 0.00 0.00 0.00 4.57
3363 3639 5.343307 AGGAATATGTTTGGGAAATGCAC 57.657 39.130 0.00 0.00 0.00 4.57
3364 3640 6.371595 AAAGGAATATGTTTGGGAAATGCA 57.628 33.333 0.00 0.00 0.00 3.96
3365 3641 7.686438 AAAAAGGAATATGTTTGGGAAATGC 57.314 32.000 0.00 0.00 0.00 3.56
3502 3778 9.018582 GCTTAGGGAAATAAATGATAGATGCTT 57.981 33.333 0.00 0.00 0.00 3.91
3847 4463 9.454859 AAAAAGGAACAAACATCCATTTTAACA 57.545 25.926 6.70 0.00 42.72 2.41
4078 4698 6.357367 AGAAAGGTGGCATAAATGTACCTAG 58.643 40.000 16.30 0.00 42.49 3.02
4188 4808 5.399858 TCGACTAATGTCACTCTTGTAAGC 58.600 41.667 0.00 0.00 43.06 3.09
4577 5204 7.174107 ACCAAGTTCTAACCTAAATACGCTA 57.826 36.000 0.00 0.00 0.00 4.26
5324 5982 0.813821 GAGCCAAAATCAGGACCTGC 59.186 55.000 17.33 2.93 0.00 4.85
5540 6198 1.815003 ACTGAAAGCAATGCTACCAGC 59.185 47.619 25.89 9.99 39.81 4.85
5541 6199 4.697352 AGTTACTGAAAGCAATGCTACCAG 59.303 41.667 24.96 24.96 38.25 4.00
5543 6201 5.629079 AAGTTACTGAAAGCAATGCTACC 57.371 39.130 8.68 3.88 38.25 3.18
5544 6202 7.930513 AAAAAGTTACTGAAAGCAATGCTAC 57.069 32.000 8.68 6.79 38.25 3.58
5935 6593 4.238514 CTCGAGGACAAACTCAAACTAGG 58.761 47.826 3.91 0.00 37.34 3.02
6051 6709 3.662247 ATCGACTGTTTCTTCTCCGTT 57.338 42.857 0.00 0.00 0.00 4.44
6212 6870 5.147162 GTTGTTAACAGTGCAAGCTCATAC 58.853 41.667 8.56 0.00 0.00 2.39
6214 6872 3.004734 GGTTGTTAACAGTGCAAGCTCAT 59.995 43.478 8.56 0.00 37.55 2.90
6322 6980 8.724229 CATCAATCTTCAAAAGTGATAGTGACA 58.276 33.333 0.00 0.00 31.18 3.58
6409 7067 1.136500 GTCAGTCGGTTAGGATCCACC 59.864 57.143 15.82 12.88 39.35 4.61
6410 7068 1.822990 TGTCAGTCGGTTAGGATCCAC 59.177 52.381 15.82 3.83 0.00 4.02
6507 7165 2.808206 CCTATCGTCCCAGCCCACC 61.808 68.421 0.00 0.00 0.00 4.61
6566 7224 5.987019 TCCCAGCCTACCAAATTAGTAAT 57.013 39.130 0.00 0.00 0.00 1.89
6567 7225 5.398581 CCATCCCAGCCTACCAAATTAGTAA 60.399 44.000 0.00 0.00 0.00 2.24
6580 7238 1.929494 TGGAAATTACCATCCCAGCCT 59.071 47.619 0.00 0.00 34.77 4.58
6625 7283 8.704668 AGTTTTTGGGTGATTTCAGAATTTACT 58.295 29.630 1.35 0.00 0.00 2.24
6795 7453 6.149807 TCTCACTTTGTTTCAAACGGTTAGTT 59.850 34.615 0.00 0.00 46.76 2.24
6872 7614 5.828328 ACTTACAGGCTTAGCTTTTCTGTTT 59.172 36.000 16.40 2.87 39.16 2.83
6957 7699 4.156556 TGTTGGTAATGCTTTCAGATCAGC 59.843 41.667 0.00 0.00 36.49 4.26
7004 7746 3.192922 GTCCAAATACGCGCGCCT 61.193 61.111 32.58 17.53 0.00 5.52
7017 7759 2.102252 GCAAACTGGGTCAAATTGTCCA 59.898 45.455 11.09 10.20 0.00 4.02
7028 7770 2.123897 AGCAACCGCAAACTGGGT 60.124 55.556 0.00 0.00 42.27 4.51
7059 7801 1.479323 TCCCCTTGTTTCGATACGAGG 59.521 52.381 26.99 26.99 45.65 4.63
7067 7809 5.897377 AATTAGTTGATCCCCTTGTTTCG 57.103 39.130 0.00 0.00 0.00 3.46
7080 7822 5.642063 CGAGGAGCTTTGGTTAATTAGTTGA 59.358 40.000 0.00 0.00 0.00 3.18
7112 7855 3.422303 GTGGCGCTGATCGTTGCA 61.422 61.111 7.64 0.00 41.07 4.08
7166 7909 1.852157 AATCTGGAGGAAGCGCCCAA 61.852 55.000 2.29 0.00 37.37 4.12
7441 8209 2.494059 TGCTTCTCACGGAAGGAAAAG 58.506 47.619 7.37 0.00 46.69 2.27
7685 8471 0.807496 GCCTCTCGCAGAAGCAAAAT 59.193 50.000 2.95 0.00 42.27 1.82
7707 8493 3.189287 GTGCCTCTGACGAAATCACAATT 59.811 43.478 0.00 0.00 32.37 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.